Citrus Sinensis ID: 016681

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTSYLCSASTCRG
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEHEEEEccc
Coil and Loop (DISEMBL)
MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLenirypneATIRTLISALCKGGQLQTYVDMLDrihgkrcspmvIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMenaglkpydeTFNLLIEGCAKAKRIEESLSYCEQMmsrkllpscSAFNEMIRRLCECGNAKQANGMLTLAldkgfspneitySHLIGGYAKEGEIQEVLKLYYEMEyksisptlpayTSLISSLCQCGKLEEADKYFKIMKshslvpgvdiYESLVGIHLEKGNKAKALHLCEEMVseglkpstsylcsastcrg
Flexible Loop (DISEMBL)
MRLFEVAFDVCRYLEQRGFSLSLISFNTLIhvvtksdrnDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMvseglkpstsylcsastcrg
Low Complexity Region (SEG)
MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSlilriiqeerieeGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTSYLCSASTCRG
Disordered region (IsUnstruct)
**LFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV*******************
Disordered Region (DISOPRED)
MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTSYLCSASTCRG
Disordered Region (DISEMBL)
MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTS**********
Disordered Region (DISPRO)
MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTSYLCSASTCRG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTSYLCSASTCRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
Q3ECH5	544	Pentatricopeptide repeat-	yes	no	0.937	0.661	0.527	1e-109
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.968	0.497	0.265	4e-41
Q9LPX2	644	Pentatricopeptide repeat-	no	no	0.843	0.503	0.272	4e-39
Q0WKV3	637	Pentatricopeptide repeat-	no	no	0.929	0.560	0.261	7e-38
Q3EDF8	598	Pentatricopeptide repeat-	no	no	0.942	0.605	0.267	8e-38
Q9FJE6	907	Putative pentatricopeptid	no	no	0.804	0.340	0.292	1e-37
Q6NQ83	619	Pentatricopeptide repeat-	no	no	0.924	0.573	0.265	2e-36
Q9LQ14	629	Pentatricopeptide repeat-	no	no	0.914	0.558	0.260	7e-36
Q940A6	838	Pentatricopeptide repeat-	no	no	0.916	0.420	0.258	9e-36
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.929	0.473	0.263	1e-35

>sp|Q3ECH5|PP107_ARATH Pentatricopeptide repeat-containing protein At1g66345, mitochondrial OS=Arabidopsis thaliana GN=At1g66345 PE=1 SV=1

 Score =  394 bits (1011), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/366 (52%), Positives = 258/366 (70%)

Query: 1   MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEAT 60
           +R  E+ FDV + L   GF+LS+I+ NTLIH  +KS  +DLVWRIY+  ++   YPNE T
Sbjct: 177 IRYLELGFDVFKRLCDCGFTLSVITLNTLIHYSSKSKIDDLVWRIYECAIDKRIYPNEIT 236

Query: 61  IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRML 120
           IR +I  LCK G+L+  VD+LDRI GKRC P VIVNTSL+ R+++E RIEE M LLKR+L
Sbjct: 237 IRIMIQVLCKEGRLKEVVDLLDRICGKRCLPSVIVNTSLVFRVLEEMRIEESMSLLKRLL 296

Query: 121 RKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE 180
            KNM+ DTI YS++VYAK K  +L SA  V++EML+RGFSANSFVYT F+   CE G ++
Sbjct: 297 MKNMVVDTIGYSIVVYAKAKEGDLVSARKVFDEMLQRGFSANSFVYTVFVRVCCEKGDVK 356

Query: 181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI 240
           EA  L+ EME +G+ PYDETFN LI G A+    E+ L YCE M++R L+PSCSAFNEM+
Sbjct: 357 EAERLLSEMEESGVSPYDETFNCLIGGFARFGWEEKGLEYCEVMVTRGLMPSCSAFNEMV 416

Query: 241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS 300
           + + +  N  +AN +LT ++DKGF P+E TYSHLI G+ +  +I + LKL+YEMEY+ +S
Sbjct: 417 KSVSKIENVNRANEILTKSIDKGFVPDEHTYSHLIRGFIEGNDIDQALKLFYEMEYRKMS 476

Query: 301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHL 360
           P    + SLI  LC CGK+E  +KY KIMK   + P  DIY++L+    + G+K  A  +
Sbjct: 477 PGFEVFRSLIVGLCTCGKVEAGEKYLKIMKKRLIEPNADIYDALIKAFQKIGDKTNADRV 536

Query: 361 CEEMVS 366
             EM+S
Sbjct: 537 YNEMIS 542

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score =  169 bits (427), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 183/373 (49%), Gaps = 1/373 (0%)

Query: 1   MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRN-DLVWRIYQHMLENIRYPNEA 59
           + L + A  +    +  GF   ++S+N ++    +S RN      +++ MLE+   PN  
Sbjct: 147 LSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVF 206

Query: 60  TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRM 119
           T   LI   C  G +   + + D++  K C P V+   +LI    +  +I++G  LL+ M
Sbjct: 207 TYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM 266

Query: 120 LRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKI 179
             K +  + I+Y++++    +   ++    V  EM +RG+S +   Y T I  YC+ G  
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNF 326

Query: 180 EEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM 239
            +A  +  EM   GL P   T+  LI    KA  +  ++ + +QM  R L P+   +  +
Sbjct: 327 HQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTL 386

Query: 240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSI 299
           +    + G   +A  +L    D GFSP+ +TY+ LI G+   G++++ + +  +M+ K +
Sbjct: 387 VDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGL 446

Query: 300 SPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALH 359
           SP + +Y++++S  C+   ++EA +  + M    + P    Y SL+    E+    +A  
Sbjct: 447 SPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACD 506

Query: 360 LCEEMVSEGLKPS 372
           L EEM+  GL P 
Sbjct: 507 LYEEMLRVGLPPD 519

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1

 Score =  162 bits (410), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 178/359 (49%)

Query: 2   RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATI 61
           R    AF     + + G+    + FNTL++ +    R      +   M+E    P   T+
Sbjct: 137 RKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITL 196

Query: 62  RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLR 121
            TL++ LC  G++   V ++DR+      P  +    ++  + +  +    M LL++M  
Sbjct: 197 NTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEE 256

Query: 122 KNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE 181
           +N+  D + YS+I+    K  +L++A  ++ EM  +GF A+   Y T IG +C  G+ ++
Sbjct: 257 RNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDD 316

Query: 182 ANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241
              L+++M    + P   TF++LI+   K  ++ E+    ++MM R + P+   +N +I 
Sbjct: 317 GAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLID 376

Query: 242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP 301
             C+    ++A  M+ L + KG  P+ +T++ LI GY K   I + L+L+ EM  + +  
Sbjct: 377 GFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIA 436

Query: 302 TLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHL 360
               Y +L+   CQ GKLE A K F+ M S  + P +  Y+ L+    + G   KAL +
Sbjct: 437 NTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEI 495

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1

 Score =  158 bits (399), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 179/359 (49%)

Query: 6   VAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLI 65
           +AF     + + G+  + I+F+TLI+ +    R      +   M+E    P+  TI TL+
Sbjct: 141 LAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLV 200

Query: 66  SALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI 125
           + LC  G+    + ++D++    C P  +    ++  + +  +    M LL++M  +N+ 
Sbjct: 201 NGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIK 260

Query: 126 HDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCL 185
            D + YS+I+    K  +L++A  ++ EM  +G + N   Y   IG +C  G+ ++   L
Sbjct: 261 LDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKL 320

Query: 186 MQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE 245
           +++M    + P   TF++LI+   K  ++ E+    ++M+ R + P    +  +I   C+
Sbjct: 321 LRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCK 380

Query: 246 CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPA 305
             +  +AN M+ L + KG  PN  T++ LI GY K   I + L+L+ +M  + +      
Sbjct: 381 ENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVT 440

Query: 306 YTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEM 364
           Y +LI   C+ GKL  A + F+ M S  + P +  Y+ L+    + G   KAL + E++
Sbjct: 441 YNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 499

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score =  158 bits (399), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 179/363 (49%), Gaps = 1/363 (0%)

Query: 14  LEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ 73
           L++   S  ++++NT++  +  S +      +   ML+   YP+  T   LI A C+   
Sbjct: 195 LDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG 254

Query: 74  LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSL 133
           +   + +LD +  + C+P V+    L+  I +E R++E +  L  M       + I +++
Sbjct: 255 VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314

Query: 134 IVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG 193
           I+ +         A  +  +ML++GFS +   +   I   C  G +  A  ++++M   G
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374

Query: 194 LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQAN 253
            +P   ++N L+ G  K K+++ ++ Y E+M+SR   P    +N M+  LC+ G  + A 
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434

Query: 254 GMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSL 313
            +L     KG SP  ITY+ +I G AK G+  + +KL  EM  K + P    Y+SL+  L
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGL 494

Query: 314 CQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPS- 372
            + GK++EA K+F   +   + P    + S++    +     +A+     M++ G KP+ 
Sbjct: 495 SREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNE 554

Query: 373 TSY 375
           TSY
Sbjct: 555 TSY 557

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1

 Score =  157 bits (398), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 160/311 (51%)

Query: 63  TLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK 122
            LI  LCK  ++   V +   + GK   P V+   +L+  + + +  E G+ ++  ML  
Sbjct: 267 VLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCL 326

Query: 123 NMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEA 182
                  A S +V    K   +E AL + + ++  G S N FVY   I + C+  K  EA
Sbjct: 327 RFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEA 386

Query: 183 NCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRR 242
             L   M   GL+P D T+++LI+   +  +++ +LS+  +M+   L  S   +N +I  
Sbjct: 387 ELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLING 446

Query: 243 LCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT 302
            C+ G+   A G +   ++K   P  +TY+ L+GGY  +G+I + L+LY+EM  K I+P+
Sbjct: 447 HCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPS 506

Query: 303 LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCE 362
           +  +T+L+S L + G + +A K F  M   ++ P    Y  ++  + E+G+ +KA    +
Sbjct: 507 IYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLK 566

Query: 363 EMVSEGLKPST 373
           EM  +G+ P T
Sbjct: 567 EMTEKGIVPDT 577

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1

 Score =  153 bits (387), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 174/358 (48%)

Query: 7   AFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLIS 66
           AF V     + G+    I+F+TL++      R      +   M+E  + P+  T+ TLI+
Sbjct: 124 AFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLIN 183

Query: 67  ALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIH 126
            LC  G++   + ++DR+      P  +    ++ R+ +       + L ++M  +N+  
Sbjct: 184 GLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKA 243

Query: 127 DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLM 186
             + YS+++ +  K  + + AL ++ EM  +G  A+   Y++ IG  C  GK ++   ++
Sbjct: 244 SVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKML 303

Query: 187 QEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC 246
           +EM    + P   TF+ LI+   K  ++ E+     +M++R + P    +N +I   C+ 
Sbjct: 304 REMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKE 363

Query: 247 GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAY 306
               +AN M  L + KG  P+ +TYS LI  Y K   + + ++L+ E+  K + P    Y
Sbjct: 364 NCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITY 423

Query: 307 TSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEM 364
            +L+   CQ GKL  A + F+ M S  + P V  Y  L+    + G   KAL + E+M
Sbjct: 424 NTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 481

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2

 Score =  151 bits (382), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 22  SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEA-TIRTLISALCKGGQLQTYVDM 80
           S++ FN L+  + K ++ DLV  + + M +N+R   +  +   LI+  C+  QL   + +
Sbjct: 79  SIVEFNKLLSAIAKMNKFDLVISLGERM-QNLRISYDLYSYNILINCFCRRSQLPLALAV 137

Query: 81  LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK 140
           L ++      P ++  +SL+      +RI E + L+ +M       +T+ ++ +++    
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFL 197

Query: 141 MRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDET 200
                 A+ + + M+ RG   + F Y T +   C+ G I+ A  L+++ME   ++     
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257

Query: 201 FNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLAL 260
           +  +I+     K + ++L+   +M ++ + P+   +N +IR LC  G    A+ +L+  +
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317

Query: 261 DKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLE 320
           ++  +PN +T+S LI  + KEG++ E  KLY EM  +SI P +  Y+SLI+  C   +L+
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 321 EADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPST 373
           EA   F++M S    P V  Y +L+    +     + + L  EM   GL  +T
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 430

Arabidopsis thaliana (taxid: 3702)

>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2

 Score =  151 bits (381), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 174/356 (48%)

Query: 18  GFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTY 77
           GF+++  SF ++I ++      D   R    ML     P    + TLIS LCK G+    
Sbjct: 443 GFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKA 502

Query: 78  VDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA 137
           +++  +   K        + +L+  + +  +++E   + K +L +  + D ++Y+ ++  
Sbjct: 503 LELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISG 562

Query: 138 KVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPY 197
               + L+ A +  +EM+KRG   +++ Y+  I       K+EEA     + +  G+ P 
Sbjct: 563 CCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPD 622

Query: 198 DETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLT 257
             T++++I+GC KA+R EE   + ++MMS+ + P+   +N +IR  C  G    A  +  
Sbjct: 623 VYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRE 682

Query: 258 LALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCG 317
               KG SPN  TY+ LI G +    ++E   L+ EM  + + P +  YT+LI    + G
Sbjct: 683 DMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLG 742

Query: 318 KLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPST 373
           ++ + +   + M S ++ P    Y  ++G +   GN  +A  L  EM  +G+ P +
Sbjct: 743 QMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDS 798

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 180/361 (49%), Gaps = 4/361 (1%)

Query: 16  QRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQ 75
           Q GF     +FNTL++ + K+        I   ML+    P+  T  ++IS LCK G+++
Sbjct: 288 QDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVK 347

Query: 76  TYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIV 135
             V++LD++  + CSP  +   +LI  + +E ++EE   L + +  K ++ D   ++ ++
Sbjct: 348 EAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407

Query: 136 YAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLK 195
                 RN   A+ ++EEM  +G   + F Y   I + C  GK++EA  ++++ME +G  
Sbjct: 408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA 467

Query: 196 PYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGM 255
               T+N LI+G  KA +  E+    ++M    +  +   +N +I  LC+    + A  +
Sbjct: 468 RSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQL 527

Query: 256 LTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQ 315
           +   + +G  P++ TY+ L+  + + G+I++   +   M      P +  Y +LIS LC+
Sbjct: 528 MDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587

Query: 316 CGKLEEADKYFKI--MKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPST 373
            G++E A K  +   MK  +L P    Y  ++     K    +A++L  EM+ +   P  
Sbjct: 588 AGRVEVASKLLRSIQMKGINLTPHA--YNPVIQGLFRKRKTTEAINLFREMLEQNEAPPD 645

Query: 374 S 374
           +
Sbjct: 646 A 646

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
224077264	556	predicted protein [Populus trichocarpa]	0.979	0.676	0.65	1e-141
359488297	547	PREDICTED: pentatricopeptide repeat-cont	0.843	0.592	0.643	1e-139
255580733	619	pentatricopeptide repeat-containing prot	0.835	0.518	0.626	1e-137
147856554	642	hypothetical protein VITISV_012747 [Viti	0.932	0.557	0.628	1e-133
449530002	539	PREDICTED: pentatricopeptide repeat-cont	0.825	0.588	0.600	1e-126
449445200	517	PREDICTED: pentatricopeptide repeat-cont	0.825	0.613	0.600	1e-125
297838283	539	pentatricopeptide repeat-containing prot	0.940	0.669	0.534	1e-112
30697337	544	pentatricopeptide repeat-containing prot	0.937	0.661	0.527	1e-107
356530235	541	PREDICTED: pentatricopeptide repeat-cont	0.950	0.674	0.450	4e-96
125524596	1121	hypothetical protein OsI_00576 [Oryza sa	0.981	0.336	0.386	3e-79

>gi|224077264|ref|XP_002305195.1| predicted protein [Populus trichocarpa] gi|222848159|gb|EEE85706.1| predicted protein [Populus trichocarpa]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/380 (65%), Positives = 305/380 (80%)

Query: 2   RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATI 61
           R+FE+ FDVC  LE+  F+LSLISFNTLIHVV KSD++ L W+IY+HML    YPNEATI
Sbjct: 177 RMFEIGFDVCCRLEEHRFTLSLISFNTLIHVVQKSDKSPLAWKIYEHMLHRRTYPNEATI 236

Query: 62  RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLR 121
            ++ISALCK G+LQT V+MLD+IHGKRCSP+VIVNT L+ RI++E R+E G+ LLK MLR
Sbjct: 237 ESMISALCKEGKLQTIVNMLDKIHGKRCSPVVIVNTCLVFRILEEGRVEPGLALLKMMLR 296

Query: 122 KNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE 181
           KNMI DT+AYSLIVYAKVK+ NL SA+ VYEEMLKRGF+ANSFVYT+FIGAYC+  +IEE
Sbjct: 297 KNMILDTVAYSLIVYAKVKLGNLNSAMQVYEEMLKRGFNANSFVYTSFIGAYCKEERIEE 356

Query: 182 ANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241
           AN L+QEMEN GLKPY +TFN L+EGCAKA R+EE+LSYC++MM    +PS SAFNEM+ 
Sbjct: 357 ANQLLQEMENMGLKPYGDTFNFLLEGCAKAGRVEETLSYCKKMMEMGHVPSLSAFNEMVG 416

Query: 242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP 301
           +LC   +  +AN MLT  LD+GF  +EITYS+LI GYAK  +IQE+LKLYYEMEY+S+SP
Sbjct: 417 KLCRIEDVTRANEMLTNLLDEGFLADEITYSNLISGYAKNNQIQEMLKLYYEMEYRSLSP 476

Query: 302 TLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLC 361
            L  +TSLI  LC CGKLEEA+KY +IM   SL P  D+YE+L+ ++ EKG+K +AL+L 
Sbjct: 477 GLMGFTSLIKGLCNCGKLEEAEKYLRIMIGRSLNPREDVYEALIKVYFEKGDKRRALNLY 536

Query: 362 EEMVSEGLKPSTSYLCSAST 381
            EMVS+GLK   S+   AST
Sbjct: 537 NEMVSKGLKLCCSHYLGAST 556

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488297|ref|XP_003633738.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial-like [Vitis vinifera]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 242/376 (64%), Positives = 298/376 (79%)

Query: 1   MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEAT 60
           +R+FE+ FDVC YLE+ GFSLSLISFNTL+HVV KSD   LVW+IY+HM+   +YPNE +
Sbjct: 169 LRMFEICFDVCCYLEEHGFSLSLISFNTLLHVVQKSDNYPLVWKIYEHMIRVRKYPNEVS 228

Query: 61  IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRML 120
           +  +ISALCK G LQ +VDMLDRIHGKRCSP+VIVNT +I R+++E R+E+GM++LKR+L
Sbjct: 229 VSVMISALCKEGALQKFVDMLDRIHGKRCSPIVIVNTCMIFRMLEEGRVEQGMLILKRLL 288

Query: 121 RKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE 180
           +KNMI DTI+YSLI YAKVK   L+SA  VYEEML RGF  N+FVYT FIG++C  G+IE
Sbjct: 289 QKNMILDTISYSLIAYAKVKYGTLDSAWEVYEEMLNRGFHPNAFVYTLFIGSHCVEGRIE 348

Query: 181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI 240
           EAN LMQ+MENAGL PYDETFNLLI GC+KA R+EE L  CE+MM R L+PSC AFN M 
Sbjct: 349 EANELMQDMENAGLMPYDETFNLLIAGCSKAGRLEEGLRLCERMMQRGLVPSCWAFNLMA 408

Query: 241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS 300
            +LCE G  K+A+ MLTL LDKGF P+EITYS+LI  Y K GEIQ+VLKLYYEMEY+S+S
Sbjct: 409 GKLCESGVVKRADEMLTLLLDKGFVPDEITYSNLIASYGKLGEIQQVLKLYYEMEYRSLS 468

Query: 301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHL 360
           P L A+ SLI SLCQC KLE+A+KY +IMK  S+     +YE+L+  + EKG++ +A  L
Sbjct: 469 PGLLAFESLIRSLCQCRKLEKAEKYLRIMKDRSIAISTCVYETLISSYFEKGDELRASQL 528

Query: 361 CEEMVSEGLKPSTSYL 376
             EMVS GLKPS SY+
Sbjct: 529 HNEMVSRGLKPSCSYM 544

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580733|ref|XP_002531188.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223529229|gb|EEF31203.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/375 (62%), Positives = 293/375 (78%)

Query: 1   MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEAT 60
           +RLFE+ F +C YLE+ GF LSL+SFNTLIHVV KSD+  LVW+IY+HM+    YPNEAT
Sbjct: 177 LRLFEIGFKICFYLEEHGFFLSLLSFNTLIHVVQKSDQYPLVWKIYEHMIHKRIYPNEAT 236

Query: 61  IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRML 120
           IRT+I+ALCK G+LQ +VD+LDRIHGKRC P+VI+N  ++ RI+QE R++ G+ +LK ML
Sbjct: 237 IRTMINALCKEGKLQMFVDILDRIHGKRCRPLVIINACMVFRILQEGRVDVGIGILKGML 296

Query: 121 RKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE 180
           +KNMI DT+AYSLIV+AKV++ NL+SAL VYE MLKRGF+ANSFV+T  IGAYC  GKIE
Sbjct: 297 QKNMILDTVAYSLIVFAKVRLGNLDSALEVYEAMLKRGFNANSFVHTVLIGAYCNGGKIE 356

Query: 181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI 240
           +AN L  EM   GL+PYDETFN LIEGCAKA R+EE LSY E+M+ R L+PS  AFN+MI
Sbjct: 357 KANQLFGEMGTMGLEPYDETFNFLIEGCAKAGRVEECLSYFEKMIERGLVPSLLAFNKMI 416

Query: 241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS 300
            +LCE G   QAN  LT  LDKGFSP+E TYS+L+ GY ++ +IQEVLKLYYEMEY+ +S
Sbjct: 417 AKLCETGEVNQANTFLTRLLDKGFSPDETTYSYLMTGYERDNQIQEVLKLYYEMEYRPLS 476

Query: 301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHL 360
           P L  +T LI SLC CGKLE+A+KY +IMK  SL P   +YE+L+  HLEK + A+AL L
Sbjct: 477 PGLLVFTPLIRSLCHCGKLEQAEKYLRIMKGRSLNPSQQVYEALIAGHLEKSDTARALQL 536

Query: 361 CEEMVSEGLKPSTSY 375
             EM+S+G  P  SY
Sbjct: 537 YNEMISKGFTPCCSY 551

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856554|emb|CAN82481.1| hypothetical protein VITISV_012747 [Vitis vinifera]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/366 (62%), Positives = 288/366 (78%)

Query: 1   MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEAT 60
           +R+FE+ FDVC YLE+ GFSLSLISFN L+HVV KSD   LVW+IY+HM+   +YPNE +
Sbjct: 169 LRMFEICFDVCCYLEEHGFSLSLISFNXLLHVVQKSDNYPLVWKIYEHMIRVRKYPNEVS 228

Query: 61  IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRML 120
           +  +ISALCK G LQ +VDMLDRIHGKRCSP+VIVNT +I R+++E R+E+GM++LKR+L
Sbjct: 229 VSVMISALCKEGALQKFVDMLDRIHGKRCSPIVIVNTCMIFRMLEEGRVEQGMLILKRLL 288

Query: 121 RKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE 180
           +KNMI DTI+YSLI YAKVK   L+SA  VYEEML RGF  N+FVYT FIG++C  G+IE
Sbjct: 289 QKNMILDTISYSLIAYAKVKYGTLDSAWEVYEEMLNRGFHPNAFVYTLFIGSHCVEGRIE 348

Query: 181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI 240
           EAN LMQ+MENAGL PYDETFNLLI GC+KA R+EE L  CE+MM R L+PSC AFN M 
Sbjct: 349 EANELMQDMENAGLMPYDETFNLLIAGCSKAGRLEEGLRLCERMMQRGLVPSCWAFNLMA 408

Query: 241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS 300
            +LCE G  K+A+ MLTL LDKGF P+EITYS+LI  Y K GEIQ+VLKLYYEMEY+S+S
Sbjct: 409 GKLCESGVVKRADEMLTLLLDKGFVPDEITYSNLIASYGKLGEIQQVLKLYYEMEYRSLS 468

Query: 301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHL 360
           P L  + S+I SLCQC KLE+A+KY +IMK  S+     +YE+L+  + EKG++ +A  L
Sbjct: 469 PGLLVFESIIRSLCQCRKLEKAEKYLRIMKDRSIAISTCVYETLISGYFEKGDELRASQL 528

Query: 361 CEEMVS 366
             EM++
Sbjct: 529 HNEMLT 534

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530002|ref|XP_004171986.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial-like [Cucumis sativus]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/368 (60%), Positives = 281/368 (76%)

Query: 1   MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEAT 60
           +RL + A  VC +LE+RGFSLSLISFNTLIHVV KSD+N  VW+IY+ M+    YPN  T
Sbjct: 172 LRLIDFALCVCSHLEERGFSLSLISFNTLIHVVEKSDQNLKVWKIYEQMIRKRVYPNAIT 231

Query: 61  IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRML 120
           +R +I++LCK G+LQ   DML+RIHG RCS  +IVN  LI RI++E R+E+G+ LLKRML
Sbjct: 232 VRIMINSLCKEGKLQETSDMLNRIHGSRCSASLIVNACLIYRILEEGRVEDGITLLKRML 291

Query: 121 RKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE 180
           +KNM+ D IAYSLIVYAKVK  ++ S   V+EEM +RGF ANSF+YT FIG +C  GK+E
Sbjct: 292 QKNMVLDDIAYSLIVYAKVKTGSITSTWEVFEEMSERGFQANSFIYTLFIGVHCRGGKVE 351

Query: 181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI 240
           EA+CLMQEMEN GLKPY ETFNLLIEGCA +   EE LS CE+M+ R  LPSCS FN  I
Sbjct: 352 EAHCLMQEMENMGLKPYPETFNLLIEGCAISGHSEEILSMCEKMLERGFLPSCSVFNVAI 411

Query: 241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS 300
            ++CE G+ K+AN +LT+ LDKGF P+E TY++LI GY K GEIQE+LKLYYEM  + +S
Sbjct: 412 AKICEKGDVKKANALLTILLDKGFLPDETTYTNLIIGYRKSGEIQEILKLYYEMGARLLS 471

Query: 301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHL 360
           P +  + +LI SLCQ G+LEEA+KY KI+K  SL P + IY++L+  +L+KGN+AKAL L
Sbjct: 472 PGVSVFFALIGSLCQSGRLEEAEKYLKIVKDSSLTPCLSIYQALILFYLKKGNRAKALEL 531

Query: 361 CEEMVSEG 368
             EM+ +G
Sbjct: 532 YNEMMFDG 539

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445200|ref|XP_004140361.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial-like [Cucumis sativus]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/368 (60%), Positives = 281/368 (76%)

Query: 1   MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEAT 60
           +RL + A  VC +LE+RGFSLSLISFNTLIHVV KSD N  VW+IY+ M+    YPN  T
Sbjct: 150 LRLIDFALCVCSHLEERGFSLSLISFNTLIHVVEKSDENLKVWKIYEQMIRKRVYPNAIT 209

Query: 61  IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRML 120
           +R +I++LCK G+LQ   DML+RIHG RCS  +IVN  LI RI++E R+E+G+ LLKRML
Sbjct: 210 VRIMINSLCKEGKLQETSDMLNRIHGSRCSASLIVNACLIYRILEEGRVEDGITLLKRML 269

Query: 121 RKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE 180
           +KNM+ D IAYSLIVYAKVK  ++ S   V+EEM +RGF ANSF+YT FIG +C  GK+E
Sbjct: 270 QKNMVLDDIAYSLIVYAKVKTGSITSTWEVFEEMSERGFQANSFIYTLFIGVHCRGGKVE 329

Query: 181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI 240
           EA+CLMQEMEN GLKPY ETFNLLIEGCA +   EE LS CE+M+ R  LPSCS FN  I
Sbjct: 330 EAHCLMQEMENMGLKPYPETFNLLIEGCAISGHSEEILSMCEKMLERGFLPSCSVFNVAI 389

Query: 241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS 300
            ++CE G+ K+AN +LT+ LDKGF P+E TY++LI GY K GEIQE+LKLYYEM  + +S
Sbjct: 390 DKICEKGDVKKANALLTILLDKGFLPDETTYTNLIIGYRKSGEIQEILKLYYEMGARLLS 449

Query: 301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHL 360
           P +  + +LI SLCQ G+LEEA+KY KI+K  SL P + IY++L+ ++L+KGN+AKAL L
Sbjct: 450 PGVSVFFALIGSLCQSGRLEEAEKYLKIVKDSSLTPCLSIYQALILLYLKKGNRAKALEL 509

Query: 361 CEEMVSEG 368
             EM+ +G
Sbjct: 510 YNEMMFDG 517

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838283|ref|XP_002887023.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297332864|gb|EFH63282.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/365 (53%), Positives = 261/365 (71%)

Query: 1   MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEAT 60
           +R  E+ F+V + L   GFSLS+I+ NTLIH   KS+R DLVWRIY+  ++   YPNE T
Sbjct: 171 IRYLELGFEVFKRLCDCGFSLSVITLNTLIHFAAKSNRVDLVWRIYEFAIDKRIYPNETT 230

Query: 61  IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRML 120
           IR +IS LCK G+L+  VD+LDRI+GKRC P VIVNTSL+ R+++E+R+EE M LLKR+L
Sbjct: 231 IRIMISVLCKEGRLKEVVDLLDRIYGKRCLPSVIVNTSLVFRVLEEKRVEESMSLLKRLL 290

Query: 121 RKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE 180
            KNM+ D I YS++VYAK K  +LE A  V++EM++RGFSAN+FVYT F+   CE G +E
Sbjct: 291 MKNMVVDVIGYSIVVYAKTKKGDLECARNVFDEMIRRGFSANAFVYTAFVRVCCERGDVE 350

Query: 181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI 240
           EA  LM EME++G+ PY+ETFN LI GCA+  R E+ L YCE M++R L+PSCSAFN M+
Sbjct: 351 EAERLMSEMEDSGVNPYEETFNFLIVGCARFGREEKGLEYCEIMVARGLMPSCSAFNGMV 410

Query: 241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS 300
           +RL E  N  +AN +LT ++DKGF P+E TYSHLI G+ +   I + LKL+YEMEY+ IS
Sbjct: 411 KRLSEIDNVNRANEILTKSIDKGFVPDEHTYSHLIRGFVEGNSIDQALKLFYEMEYRKIS 470

Query: 301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHL 360
           P    + SLI  LC CGK+E  +KY +IMK   + P  DIYE+++    + G+K  A  +
Sbjct: 471 PGFEVFRSLIVGLCACGKVEAGEKYLRIMKRRLIEPNADIYEAMINAFQKIGDKTNADKV 530

Query: 361 CEEMV 365
             EM+
Sbjct: 531 YNEMI 535

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697337|ref|NP_849849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|122215314|sp|Q3ECH5.1|PP107_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g66345, mitochondrial; Flags: Precursor gi|332196377|gb|AEE34498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/366 (52%), Positives = 258/366 (70%)

Query: 1   MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEAT 60
           +R  E+ FDV + L   GF+LS+I+ NTLIH  +KS  +DLVWRIY+  ++   YPNE T
Sbjct: 177 IRYLELGFDVFKRLCDCGFTLSVITLNTLIHYSSKSKIDDLVWRIYECAIDKRIYPNEIT 236

Query: 61  IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRML 120
           IR +I  LCK G+L+  VD+LDRI GKRC P VIVNTSL+ R+++E RIEE M LLKR+L
Sbjct: 237 IRIMIQVLCKEGRLKEVVDLLDRICGKRCLPSVIVNTSLVFRVLEEMRIEESMSLLKRLL 296

Query: 121 RKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE 180
            KNM+ DTI YS++VYAK K  +L SA  V++EML+RGFSANSFVYT F+   CE G ++
Sbjct: 297 MKNMVVDTIGYSIVVYAKAKEGDLVSARKVFDEMLQRGFSANSFVYTVFVRVCCEKGDVK 356

Query: 181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI 240
           EA  L+ EME +G+ PYDETFN LI G A+    E+ L YCE M++R L+PSCSAFNEM+
Sbjct: 357 EAERLLSEMEESGVSPYDETFNCLIGGFARFGWEEKGLEYCEVMVTRGLMPSCSAFNEMV 416

Query: 241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS 300
           + + +  N  +AN +LT ++DKGF P+E TYSHLI G+ +  +I + LKL+YEMEY+ +S
Sbjct: 417 KSVSKIENVNRANEILTKSIDKGFVPDEHTYSHLIRGFIEGNDIDQALKLFYEMEYRKMS 476

Query: 301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHL 360
           P    + SLI  LC CGK+E  +KY KIMK   + P  DIY++L+    + G+K  A  +
Sbjct: 477 PGFEVFRSLIVGLCTCGKVEAGEKYLKIMKKRLIEPNADIYDALIKAFQKIGDKTNADRV 536

Query: 361 CEEMVS 366
             EM+S
Sbjct: 537 YNEMIS 542

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530235|ref|XP_003533688.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial-like, partial [Glycine max]

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 172/382 (45%), Positives = 267/382 (69%), Gaps = 17/382 (4%)

Query: 2   RLFEVAFDVCRYLEQ-RGFSLSLIS--FNTLIHVVTKSDR-NDLVWRIYQHMLENIRYPN 57
           +L +VAFD+CRY+E+ RGFS S+    FN L+H + +S++    VW +Y+ M+    YPN
Sbjct: 160 KLTDVAFDLCRYVEEERGFSSSVSVVSFNVLLHALQRSEKCGGSVWEVYEFMIRRRAYPN 219

Query: 58  EATIRTLISALCKGGQLQTYVDMLDRI--------HGKRCSPMVIVNTSLILRIIQEERI 109
             ++R +I A+CK G+LQ  VD +DRI          +  SP +IVN  L+LRI+ + R+
Sbjct: 220 ATSLRIMIDAICKEGELQKIVDTVDRIIVGNNDCSRSRFRSPAMIVNCGLMLRILGKGRV 279

Query: 110 -----EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSF 164
                ++ +VLLKR+L+KN++H+ + YSL+V+AKV   +L+ A   Y EM++RGF  N+F
Sbjct: 280 AKSESDDVVVLLKRLLQKNLLHEKVVYSLVVHAKVVFGDLDYAWGFYLEMVQRGFEGNAF 339

Query: 165 VYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQM 224
           VYT FIGA+C  G++ +A  L++EM+  GL+PY ETF  ++ GCA A+  E+ +S+ E+M
Sbjct: 340 VYTLFIGAFCREGRVGKAIGLLREMQGKGLRPYGETFEHIVVGCAAAEDSEQCVSFFEEM 399

Query: 225 MSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEI 284
           +    +P+C  FN+++ RLCE G  ++ANGMLT+ L+KGF PN++TY+HL+ GYA++ E+
Sbjct: 400 VRVGFVPACMVFNKVVERLCEKGKVEKANGMLTVLLEKGFLPNDVTYAHLMQGYARKEEV 459

Query: 285 QEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESL 344
           QEVLKLYYEMEY+ +SP L  + +++   C+CGK+E+A+KY +IMK   + P V +Y++L
Sbjct: 460 QEVLKLYYEMEYRCVSPGLSVFGTIVQCFCRCGKVEDAEKYLRIMKGRLVRPDVSVYQAL 519

Query: 345 VGIHLEKGNKAKALHLCEEMVS 366
           +  +++KG  A+ALHL +EM S
Sbjct: 520 IDGYMKKGESARALHLRDEMAS 541

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125524596|gb|EAY72710.1| hypothetical protein OsI_00576 [Oryza sativa Indica Group]

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 148/383 (38%), Positives = 240/383 (62%), Gaps = 6/383 (1%)

Query: 2    RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATI 61
            RL E A + CRYL QRG   SL +FN ++H   ++ R  + W +++ M     Y N++T+
Sbjct: 700  RLPEEALEACRYLAQRGVVPSLPAFNAVLHAAQRTGRFGVAWEVFELMTLKRVYANQSTV 759

Query: 62   RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLR 121
              +I  L + G L     +++RIHGK+C+P V+ + +L L+I +E R E+G++LL+RML+
Sbjct: 760  ELVIGVLSREGALARMAALVERIHGKKCAPGVVAHVALTLKIFEEGRTEQGILLLRRMLQ 819

Query: 122  KNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE 181
            +NM+ D IAYSLIV+A  +  +L+SA    ++M++RG   NSFVYT  I  +C  G ++E
Sbjct: 820  RNMVFDNIAYSLIVHAHCQAGDLKSACEQRDDMVRRGCRLNSFVYTCLIRVHCRAGDVDE 879

Query: 182  ANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241
            A  L +EM +  LKPYD T++ L  GC +  R++E   Y ++M+ +  +P     N+M+ 
Sbjct: 880  AMQLFEEMISIRLKPYDATYSHLTAGCFRQGRMKEGSEYMDKMLHQGSVPDIGTCNDMLE 939

Query: 242  RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP 301
             LC+ G+  +AN +LT  +DKGF P++ TY  +  GY K G+ Q ++K+Y+EME++ ++ 
Sbjct: 940  ALCDSGHVSKANELLTALMDKGFVPDQNTYLRMTNGYGKVGDAQGIIKIYHEMEHRGLNI 999

Query: 302  TLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLC 361
             +  ++SLI +LC+CG L+EA+K+  I++   L P  +IY+ L+  + EKGN  KAL   
Sbjct: 1000 GVDVFSSLIRALCKCGDLKEAEKFLAILERKLLAPTSEIYDLLISGNCEKGNTKKALWFY 1059

Query: 362  EEMVS--EGLKPSTS----YLCS 378
            + M++  + L PS       LCS
Sbjct: 1060 DRMMTGNDKLVPSADTFMMLLCS 1082

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:1005716687	544	AT1G66345 "AT1G66345" [Arabido	0.953	0.672	0.508	4.8e-94
TAIR|locus:1009023134	644	AT1G12775 [Arabidopsis thalian	0.934	0.557	0.272	8.6e-39
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.966	0.496	0.258	1.6e-38
TAIR|locus:2034760	637	AT1G12300 [Arabidopsis thalian	0.934	0.563	0.261	2.4e-37
TAIR|locus:2168078	907	AT5G59900 "AT5G59900" [Arabido	0.830	0.351	0.287	2.4e-37
TAIR|locus:2195047	621	AT1G12620 [Arabidopsis thalian	0.945	0.584	0.261	5.8e-35
TAIR|locus:2155730	915	AT5G65560 "AT5G65560" [Arabido	0.929	0.390	0.261	2.3e-34
TAIR|locus:2026192	630	RPF2 "rna processing factor 2"	0.929	0.566	0.240	2.9e-34
TAIR|locus:2015494	629	RPF3 "RNA processing factor 3"	0.927	0.565	0.256	3.8e-34
TAIR|locus:2077061	619	AT3G22470 "AT3G22470" [Arabido	0.958	0.594	0.234	4.4e-34

TAIR|locus:1005716687 AT1G66345 "AT1G66345" [Arabidopsis thaliana (taxid:3702)]

 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 186/366 (50%), Positives = 247/366 (67%)

Query:     1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEAT 60
             +R  E+ FDV + L   GF+LS+I+ NTLIH  +KS  +DLVWRIY+  ++   YPNE T
Sbjct:   177 IRYLELGFDVFKRLCDCGFTLSVITLNTLIHYSSKSKIDDLVWRIYECAIDKRIYPNEIT 236

Query:    61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSXXXXXXXXXXXXXGMVLLKRML 120
             IR +I  LCK G+L+  VD+LDRI GKRC P VIVNTS              M LLKR+L
Sbjct:   237 IRIMIQVLCKEGRLKEVVDLLDRICGKRCLPSVIVNTSLVFRVLEEMRIEESMSLLKRLL 296

Query:   121 RKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE 180
              KNM+ DTI YS++VYAK K  +L SA  V++EML+RGFSANSFVYT F+   CE G ++
Sbjct:   297 MKNMVVDTIGYSIVVYAKAKEGDLVSARKVFDEMLQRGFSANSFVYTVFVRVCCEKGDVK 356

Query:   181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI 240
             EA  L+ EME +G+ PYDETFN LI G A+    E+ L YCE M++R L+PSCSAFNEM+
Sbjct:   357 EAERLLSEMEESGVSPYDETFNCLIGGFARFGWEEKGLEYCEVMVTRGLMPSCSAFNEMV 416

Query:   241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS 300
             + + +  N  +AN +LT ++DKGF P+E TYSHLI G+ +  +I + LKL+YEMEY+ +S
Sbjct:   417 KSVSKIENVNRANEILTKSIDKGFVPDEHTYSHLIRGFIEGNDIDQALKLFYEMEYRKMS 476

Query:   301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHL 360
             P    + SLI  LC CGK+E  +KY KIMK   + P  DIY++L+    + G+K  A  +
Sbjct:   477 PGFEVFRSLIVGLCTCGKVEAGEKYLKIMKKRLIEPNADIYDALIKAFQKIGDKTNADRV 536

Query:   361 CEEMVS 366
               EM+S
Sbjct:   537 YNEMIS 542

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 8.6e-39, P = 8.6e-39
 Identities = 98/359 (27%), Positives = 173/359 (48%)

Query:     2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATI 61
             R    AF     + + G+    + FNTL++ +    R      +   M+E    P   T+
Sbjct:   137 RKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITL 196

Query:    62 RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSXXXXXXXXXXXXXGMVLLKRMLR 121
              TL++ LC  G++   V ++DR+      P  +                  M LL++M  
Sbjct:   197 NTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEE 256

Query:   122 KNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE 181
             +N+  D + YS+I+    K  +L++A  ++ EM  +GF A+   Y T IG +C  G+ ++
Sbjct:   257 RNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDD 316

Query:   182 ANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241
                L+++M    + P   TF++LI+   K  ++ E+    ++MM R + P+   +N +I 
Sbjct:   317 GAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLID 376

Query:   242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP 301
               C+    ++A  M+ L + KG  P+ +T++ LI GY K   I + L+L+ EM  + +  
Sbjct:   377 GFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIA 436

Query:   302 TLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHL 360
                 Y +L+   CQ GKLE A K F+ M S  + P +  Y+ L+    + G   KAL +
Sbjct:   437 NTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEI 495

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 96/372 (25%), Positives = 176/372 (47%)

Query:     1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRN-DLVWRIYQHMLENIRYPNEA 59
             + L + A  +    +  GF   ++S+N ++    +S RN      +++ MLE+   PN  
Sbjct:   147 LSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVF 206

Query:    60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSXXXXXXXXXXXXXGMVLLKRM 119
             T   LI   C  G +   + + D++  K C P V+   +             G  LL+ M
Sbjct:   207 TYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM 266

Query:   120 LRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKI 179
               K +  + I+Y++++    +   ++    V  EM +RG+S +   Y T I  YC+ G  
Sbjct:   267 ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNF 326

Query:   180 EEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM 239
              +A  +  EM   GL P   T+  LI    KA  +  ++ + +QM  R L P+   +  +
Sbjct:   327 HQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTL 386

Query:   240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSI 299
             +    + G   +A  +L    D GFSP+ +TY+ LI G+   G++++ + +  +M+ K +
Sbjct:   387 VDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGL 446

Query:   300 SPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALH 359
             SP + +Y++++S  C+   ++EA +  + M    + P    Y SL+    E+    +A  
Sbjct:   447 SPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACD 506

Query:   360 LCEEMVSEGLKP 371
             L EEM+  GL P
Sbjct:   507 LYEEMLRVGLPP 518

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 94/359 (26%), Positives = 174/359 (48%)

Query:     6 VAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLI 65
             +AF     + + G+  + I+F+TLI+ +    R      +   M+E    P+  TI TL+
Sbjct:   141 LAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLV 200

Query:    66 SALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSXXXXXXXXXXXXXGMVLLKRMLRKNMI 125
             + LC  G+    + ++D++    C P  +                  M LL++M  +N+ 
Sbjct:   201 NGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIK 260

Query:   126 HDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCL 185
              D + YS+I+    K  +L++A  ++ EM  +G + N   Y   IG +C  G+ ++   L
Sbjct:   261 LDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKL 320

Query:   186 MQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE 245
             +++M    + P   TF++LI+   K  ++ E+    ++M+ R + P    +  +I   C+
Sbjct:   321 LRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCK 380

Query:   246 CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPA 305
               +  +AN M+ L + KG  PN  T++ LI GY K   I + L+L+ +M  + +      
Sbjct:   381 ENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVT 440

Query:   306 YTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEM 364
             Y +LI   C+ GKL  A + F+ M S  + P +  Y+ L+    + G   KAL + E++
Sbjct:   441 YNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 499

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
 Identities = 92/320 (28%), Positives = 157/320 (49%)

Query:    57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSXXXXXXXXXXXXXGMVLL 116
             N      LI  LCK  ++   V +   + GK   P V+   +             G+ ++
Sbjct:   261 NIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMM 320

Query:   117 KRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY 176
               ML         A S +V    K   +E AL + + ++  G S N FVY   I + C+ 
Sbjct:   321 DEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKG 380

Query:   177 GKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAF 236
              K  EA  L   M   GL+P D T+++LI+   +  +++ +LS+  +M+   L  S   +
Sbjct:   381 RKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPY 440

Query:   237 NEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEY 296
             N +I   C+ G+   A G +   ++K   P  +TY+ L+GGY  +G+I + L+LY+EM  
Sbjct:   441 NSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTG 500

Query:   297 KSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAK 356
             K I+P++  +T+L+S L + G + +A K F  M   ++ P    Y  ++  + E+G+ +K
Sbjct:   501 KGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSK 560

Query:   357 ALHLCEEMVSEGLKPST-SY 375
             A    +EM  +G+ P T SY
Sbjct:   561 AFEFLKEMTEKGIVPDTYSY 580

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 5.8e-35, P = 5.8e-35
 Identities = 95/363 (26%), Positives = 172/363 (47%)

Query:     2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATI 61
             R   +AF     + + G+    ++F+TLI+ +    R      +   M+E    P   T+
Sbjct:   121 RKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITL 180

Query:    62 RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSXXXXXXXXXXXXXGMVLLKRMLR 121
               L++ LC  G++   V ++DR+      P  +                  M LL++M  
Sbjct:   181 NALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEE 240

Query:   122 KNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE 181
             + +  D + YS+I+    K  +L++A  ++ EM  +GF A+  +YTT I  +C  G+ ++
Sbjct:   241 RKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDD 300

Query:   182 ANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241
                L+++M    + P    F+ LI+   K  ++ E+    ++M+ R + P    +  +I 
Sbjct:   301 GAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLID 360

Query:   242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP 301
               C+     +AN ML L + KG  PN  T++ LI GY K   I + L+L+ +M  + +  
Sbjct:   361 GFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVA 420

Query:   302 TLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLC 361
                 Y +LI   C+ GKLE A + F+ M S  + P +  Y+ L+    + G   KAL + 
Sbjct:   421 DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIF 480

Query:   362 EEM 364
             E++
Sbjct:   481 EKI 483

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 2.3e-34, P = 2.3e-34
 Identities = 94/360 (26%), Positives = 169/360 (46%)

Query:    16 QRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHM-LENIRYPNEATIRTLISALCKGGQL 74
             + G      ++ +LI    +    D  ++++  M L+  R  NE     LI  LC   ++
Sbjct:   246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRR-NEVAYTHLIHGLCVARRI 304

Query:    75 QTYVDMLDRIHGKRCSPMVIVNTSXXXXXXXXXXXXXGMVLLKRMLRKNMIHDTIAYSLI 134
                +D+  ++    C P V   T               + L+K M    +  +   Y+++
Sbjct:   305 DEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVL 364

Query:   135 VYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL 194
             + +       E A  +  +ML++G   N   Y   I  YC+ G IE+A  +++ ME+  L
Sbjct:   365 IDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKL 424

Query:   195 KPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANG 254
              P   T+N LI+G  K+  + +++    +M+ RK+LP    +N +I   C  GN   A  
Sbjct:   425 SPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYR 483

Query:   255 MLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLC 314
             +L+L  D+G  P++ TY+ +I    K   ++E   L+  +E K ++P +  YT+LI   C
Sbjct:   484 LLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYC 543

Query:   315 QCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTS 374
             + GK++EA    + M S + +P    + +L+      G   +A  L E+MV  GL+P+ S
Sbjct:   544 KAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVS 603

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 2.9e-34, P = 2.9e-34
 Identities = 86/357 (24%), Positives = 169/357 (47%)

Query:    17 RGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQT 76
             +G    L+++  +++ + K    DL + +   M +    P      T+I  LCK   +  
Sbjct:   215 KGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDD 274

Query:    77 YVDMLDRIHGKRCSPMVIVNTSXXXXXXXXXXXXXGMVLLKRMLRKNMIHDTIAYSLIVY 136
              +++   +  K   P V+  +S                LL  M+ + +  D   +S ++ 
Sbjct:   275 ALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID 334

Query:   137 AKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKP 196
             A VK   L  A  +Y+EM+KR    +   Y++ I  +C + +++EA  + + M +    P
Sbjct:   335 AFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 394

Query:   197 YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGML 256
                T+N LI+G  K KR+EE +    +M  R L+ +   +N +I+ L + G+   A  + 
Sbjct:   395 DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIF 454

Query:   257 TLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQC 316
                +  G  PN +TY+ L+ G  K G++++ + ++  ++   + PT+  Y  +I  +C+ 
Sbjct:   455 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 514

Query:   317 GKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPST 373
             GK+E+    F  +    + P V  Y +++     KG+K +A  L +EM  +G  P++
Sbjct:   515 GKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNS 571

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0000966 "RNA 5'-end processing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 3.8e-34, P = 3.8e-34
 Identities = 92/358 (25%), Positives = 171/358 (47%)

Query:    17 RGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATI-RTLISALCKGGQLQ 75
             RG    L ++ T+++ + K    DL   + + M E  +   +  I  T+I ALC    + 
Sbjct:   214 RGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYTTIIDALCNYKNVN 272

Query:    76 TYVDMLDRIHGKRCSPMVIVNTSXXXXXXXXXXXXXGMVLLKRMLRKNMIHDTIAYSLIV 135
               +++   +  K   P V+   S                LL  M+ + +  + + +S ++
Sbjct:   273 DALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 332

Query:   136 YAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLK 195
              A VK   L  A  +Y+EM+KR    + F Y++ I  +C + +++EA  + + M +    
Sbjct:   333 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 392

Query:   196 PYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGM 255
             P   T+N LI+G  KAKR+EE +    +M  R L+ +   +N +I+ L + G+   A  +
Sbjct:   393 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452

Query:   256 LTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQ 315
                 +  G  P+ ITYS L+ G  K G++++ L ++  ++   + P +  Y  +I  +C+
Sbjct:   453 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512

Query:   316 CGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPST 373
              GK+E+    F  +    + P V IY +++     KG K +A  L  EM  +G  P++
Sbjct:   513 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNS 570

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006397 "mRNA processing" evidence=IMP

TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 4.4e-34, P = 4.4e-34
 Identities = 87/371 (23%), Positives = 179/371 (48%)

Query:     2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLE-NIRYPNEAT 60
             R+ E    + R +E  GF    +++  +++ + KS  + L   +++ M E NI+  +   
Sbjct:   190 RVSEALVLIDRMVEY-GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIK-ASVVQ 247

Query:    61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSXXXXXXXXXXXXXGMVLLKRML 120
                +I +LCK G     + + + +  K     V+  +S             G  +L+ M+
Sbjct:   248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307

Query:   121 RKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE 180
              +N+I D + +S ++   VK   L  A  +Y EM+ RG + ++  Y + I  +C+   + 
Sbjct:   308 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLH 367

Query:   181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI 240
             EAN +   M + G +P   T+++LI    KAKR+++ +    ++ S+ L+P+   +N ++
Sbjct:   368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427

Query:   241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS 300
                C+ G    A  +    + +G  P+ +TY  L+ G    GE+ + L+++ +M+   ++
Sbjct:   428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 487

Query:   301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHL 360
               +  Y  +I  +C   K+++A   F  +    + P V  Y  ++G   +KG+ ++A  L
Sbjct:   488 LGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADML 547

Query:   361 CEEMVSEGLKP 371
               +M  +G  P
Sbjct:   548 FRKMKEDGCTP 558

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3ECH5	PP107_ARATH	No assigned EC number	0.5273	0.9375	0.6617	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-23
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	9e-23
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-11
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-07
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-06
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	4e-04
pfam01535	31	pfam01535, PPR, PPR repeat	5e-04
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	6e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	8e-04
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.001
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.001
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.001
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
pfam01535	31	pfam01535, PPR, PPR repeat	0.002

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  101 bits (254), Expect = 3e-23
 Identities = 75/348 (21%), Positives = 141/348 (40%), Gaps = 38/348 (10%)

Query: 4   FEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRT 63
            + A  V R +++ G       + TLI    KS + D ++ ++  M+      N  T   
Sbjct: 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512

Query: 64  LISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLI------------LRIIQEERIEE 111
           LI    + GQ+         +  K   P  +V  +LI              ++ E + E 
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572

Query: 112 GMV---------LLK---------------RMLRKNMIHDTIA-YSLIVYAKVKMRNLES 146
             +         L+K               +M+ +  I  T   Y++ V +  +  + + 
Sbjct: 573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632

Query: 147 ALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIE 206
           AL +Y++M K+G   +   ++  +      G +++A  ++Q+    G+K    +++ L+ 
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692

Query: 207 GCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP 266
            C+ AK  +++L   E + S KL P+ S  N +I  LCE     +A  +L+     G  P
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752

Query: 267 NEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLC 314
           N ITYS L+    ++ +    L L  + +   I P L     +   LC
Sbjct: 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =   99 bits (249), Expect = 9e-23
 Identities = 77/345 (22%), Positives = 144/345 (41%), Gaps = 42/345 (12%)

Query: 68  LCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEER-IEEGMVLLKRMLRKNMIH 126
           L + G+++  +D+L+ +  +    M  +  +   +  +++R ++E     K +    +  
Sbjct: 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLST 439

Query: 127 DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLM 186
             +  S+   ++    +++ AL V   + + G  A+  +YTT I    + GK++    + 
Sbjct: 440 FNMLMSVCASSQ----DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495

Query: 187 QEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC 246
            EM NAG++    TF  LI+GCA+A ++ ++      M S+ + P    FN +I    + 
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555

Query: 247 GNAKQANGMLT--LALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP 304
           G   +A  +L    A      P+ IT   L+   A  G++    ++Y  +   +I  T  
Sbjct: 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615

Query: 305 AYTSLISSLCQCGKLEEA--------------------------------DKYFKI---M 329
            YT  ++S  Q G  + A                                DK F+I    
Sbjct: 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675

Query: 330 KSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTS 374
           +   +  G   Y SL+G      N  KAL L E++ S  L+P+ S
Sbjct: 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 67/308 (21%), Positives = 132/308 (42%), Gaps = 11/308 (3%)

Query: 23  LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLD 82
            +S+  +I    K+   D     Y  M ++   P+E TI +++SA    G L   V + +
Sbjct: 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413

Query: 83  RIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR 142
               K     V+V  +LI    + + I++ + +   +  K++I  T   S+I   ++  R
Sbjct: 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT---SIIAGLRLNNR 470

Query: 143 NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFN 202
             E AL+ + +ML      NS      + A    G +     +   +   G+       N
Sbjct: 471 CFE-ALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528

Query: 203 LLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK 262
            L++   +  R+  + +   Q  S +      ++N ++      G    A  +    ++ 
Sbjct: 529 ALLDLYVRCGRMNYAWN---QFNSHE--KDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583

Query: 263 GFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK-SISPTLPAYTSLISSLCQCGKLEE 321
           G +P+E+T+  L+   ++ G + + L+ ++ ME K SI+P L  Y  ++  L + GKL E
Sbjct: 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643

Query: 322 ADKYFKIM 329
           A  +   M
Sbjct: 644 AYNFINKM 651

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 56.6 bits (138), Expect = 7e-11
 Identities = 22/50 (44%), Positives = 35/50 (70%)

Query: 266 PNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQ 315
           P+ +TY+ LI GY K+G+++E LKL+ EM+ + I P +  Y+ LI  LC+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 74/306 (24%), Positives = 134/306 (43%), Gaps = 24/306 (7%)

Query: 67  ALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEER-IEEGMVLLKRMLRKNMI 125
           ALC  GQL+  + +L+ +   R         +L  R+ + +R +EEG  +  R L     
Sbjct: 60  ALCSHGQLEQALKLLESMQELRVPVDEDAYVALF-RLCEWKRAVEEGSRVCSRALSS--- 115

Query: 126 HDTIAYSL---IVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEA 182
           H ++   L   ++   V+   L  A  V+ +M +R    + F +   +G Y + G  +EA
Sbjct: 116 HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEA 171

Query: 183 NCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRR 242
            CL   M  AG++P   TF  ++  C     +         ++           N +I  
Sbjct: 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231

Query: 243 LCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT 302
             +CG+   A     L  D+    + I+++ +I GY + GE  E L+L++ M   S+ P 
Sbjct: 232 YVKCGDVVSAR----LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287

Query: 303 LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPG----VDIYESLVGIHLEKGNKAKAL 358
           L   TS+IS+   C  L + ++  + M  + +  G    V +  SL+ ++L  G+  +A 
Sbjct: 288 LMTITSVISA---CELLGD-ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343

Query: 359 HLCEEM 364
            +   M
Sbjct: 344 KVFSRM 349

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 53.2 bits (129), Expect = 1e-09
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAK 210
           +   Y T I  YC+ GK+EEA  L  EM+  G+KP   T+++LI+G  K
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 127 DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYC 174
           D + Y+ ++    K   +E AL ++ EM KRG   N + Y+  I   C
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 40/198 (20%), Positives = 90/198 (45%), Gaps = 9/198 (4%)

Query: 140 KMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDE 199
           K  ++E A  V++ M ++   A    + + +  Y  +G  EEA CL  EM ++G+     
Sbjct: 271 KCGDIEDARCVFDGMPEKTTVA----WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326

Query: 200 TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLA 259
           TF+++I   ++   +E +      ++         A   ++    + G  + A  +    
Sbjct: 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV---- 382

Query: 260 LDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKL 319
            D+    N I+++ LI GY   G   + ++++  M  + ++P    + +++S+    G  
Sbjct: 383 FDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442

Query: 320 EEADKYFKIM-KSHSLVP 336
           E+  + F+ M ++H + P
Sbjct: 443 EQGWEIFQSMSENHRIKP 460

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 59/276 (21%), Positives = 118/276 (42%), Gaps = 14/276 (5%)

Query: 112 GMVLLKRMLRKNMIHDTIA-YSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFI 170
           GM++  R L   M    +A +  I+   V   N   A  ++ EM + G  A    +   +
Sbjct: 172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231

Query: 171 GAYCEYGKIEEANCLMQEMENAGLKPYDETF--NLLIEGCAKAKRIEESLSYCEQMMSRK 228
            A    G       L   +   G+    +TF    LI+  +K   IE++    + M  + 
Sbjct: 232 RASAGLGSARAGQQLHCCVLKTGV--VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK- 288

Query: 229 LLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVL 288
              +  A+N M+      G +++A  +     D G S ++ T+S +I  +++   ++   
Sbjct: 289 ---TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345

Query: 289 KLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIH 348
           + +  +        + A T+L+    + G++E+A   F  M   +L+     + +L+  +
Sbjct: 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS----WNALIAGY 401

Query: 349 LEKGNKAKALHLCEEMVSEGLKPS-TSYLCSASTCR 383
              G   KA+ + E M++EG+ P+  ++L   S CR
Sbjct: 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 43.2 bits (103), Expect = 4e-06
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 231 PSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAK 280
           P    +N +I   C+ G  ++A  +      +G  PN  TYS LI G  K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.4 bits (101), Expect = 8e-06
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 24 ISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCK 70
          +++NTLI    K  + +   +++  M +    PN  T   LI  LCK
Sbjct: 4  VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 41.2 bits (98), Expect = 1e-05
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 262 KGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEME 295
           KG  P+ +TY+ LI G  + G + E ++L  EME
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 14/239 (5%)

Query: 109 IEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTT 168
           IE+   +   M  K     T+A++ ++         E AL +Y EM   G S + F ++ 
Sbjct: 275 IEDARCVFDGMPEKT----TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330

Query: 169 FIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNL-LIEGCAKAKRIEESLSYCEQMMSR 227
            I  +     +E A      +   G  P D   N  L++  +K  R+E++       M R
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDA-RNVFDRMPR 388

Query: 228 KLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEV 287
           K L S   +N +I      G   +A  M    + +G +PN +T+  ++      G  ++ 
Sbjct: 389 KNLIS---WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445

Query: 288 LKLYYEM-EYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLV 345
            +++  M E   I P    Y  +I  L + G L+EA   + +++     P V+++ +L+
Sbjct: 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA---YAMIRRAPFKPTVNMWAALL 501

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP 336
           P +  Y +LI   C+ GK+EEA K F  MK   + P
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP 36

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 164 FVYTTFIGAYCEYGKIEEANCLMQEMENAGLKP 196
             Y T I   C+ G++EEA  L +EM+  G++P
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.0 bits (87), Expect = 5e-04
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 305 AYTSLISSLCQCGKLEEADKYFKIMKSHSL 334
            Y SLIS  C+ GKLEEA + FK MK   +
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 39/204 (19%), Positives = 91/204 (44%), Gaps = 8/204 (3%)

Query: 110 EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTF 169
           EE + L   M    +  D   +S+++    ++  LE A   +  +++ GF  +    T  
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366

Query: 170 IGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKL 229
           +  Y ++G++E+A  +   M    L     ++N LI G     R  +++   E+M++  +
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGV 422

Query: 230 LPSCSAFNEMIRRLCECGNAKQANGM-LTLALDKGFSPNEITYSHLIGGYAKEGEIQEVL 288
            P+   F  ++      G ++Q   +  +++ +    P  + Y+ +I    +EG + E  
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482

Query: 289 KLYYEMEYKSISPTLPAYTSLISS 312
            +     +K   PT+  + +L+++
Sbjct: 483 AMIRRAPFK---PTVNMWAALLTA 503

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 36.6 bits (86), Expect = 6e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 157 RGFSANSFVYTTFIGAYCEYGKIEEANCLMQEME 190
           +G   +   Y T I   C  G+++EA  L+ EME
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.3 bits (85), Expect = 8e-04
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 200 TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSC 233
           T+N LI+G  KA R+EE+L   ++M  R + P  
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 51/246 (20%), Positives = 96/246 (39%), Gaps = 17/246 (6%)

Query: 98  SLILRIIQEERIEEGMVLLKRMLRKNMIHDTIA--YSLIVYAKVKMRNLESALVVYEEML 155
           S I +++   R  E + L   +L         A  Y  +V A + ++++     VY  + 
Sbjct: 92  SQIEKLVACGRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE 150

Query: 156 KRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIE 215
             GF  + ++    +  + + G + +A  L  EM    L     ++  +I G   A    
Sbjct: 151 SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYR 206

Query: 216 ESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLI 275
           E+ +   +M           F  M+R     G+A+    +    L  G   +      LI
Sbjct: 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266

Query: 276 GGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEA-DKYFKIMKSHSL 334
             Y+K G+I++   ++  M  K+      A+ S+++     G  EEA   Y+++  S   
Sbjct: 267 DMYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMRDS--- 319

Query: 335 VPGVDI 340
             GV I
Sbjct: 320 --GVSI 323

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 42/207 (20%), Positives = 69/207 (33%), Gaps = 43/207 (20%)

Query: 199 ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTL 258
            T++ L+E C   K I    +    + S    P     N ++    +CG    A      
Sbjct: 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR----R 179

Query: 259 ALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEM-------EYKSISPTLPAYT---- 307
             D+    N  ++  +IGG    G  +E   L+ EM       E ++    L A      
Sbjct: 180 LFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239

Query: 308 ------------------------SLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYES 343
                                   +LI    +CG +E+A   F  M   + V     + S
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA----WNS 295

Query: 344 LVGIHLEKGNKAKALHLCEEMVSEGLK 370
           ++  +   G   +AL L  EM   G+ 
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVS 322

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 35.4 bits (83), Expect = 0.001
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 297 KSISPTLPAYTSLISSLCQCGKLEEADKYFKIMK 330
           K + P +  Y +LI  LC+ G+++EA +    M+
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.5 bits (83), Expect = 0.001
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 305 AYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGV 338
            Y +LI  LC+ G++EEA + FK MK   + P V
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 269 ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSI 299
           +TY+ LI GY K G+++E L+L+ EM+ K +
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.96
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.94
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.94
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.93
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.93
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.9
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.88
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.86
PRK14574	822	hmsH outer membrane protein; Provisional	99.86
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.84
KOG2076	895	consensus RNA polymerase III transcription factor	99.81
PRK14574	822	hmsH outer membrane protein; Provisional	99.8
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.8
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.79
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.79
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.79
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.78
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.78
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.76
KOG2076	895	consensus RNA polymerase III transcription factor	99.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.76
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.76
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.74
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.73
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.72
KOG1126	638	consensus DNA-binding cell division cycle control	99.72
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.71
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.7
KOG1126	638	consensus DNA-binding cell division cycle control	99.69
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.69
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.68
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.68
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.67
KOG2003	840	consensus TPR repeat-containing protein [General f	99.66
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.66
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.64
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.6
PRK12370	553	invasion protein regulator; Provisional	99.58
PRK12370	553	invasion protein regulator; Provisional	99.58
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.56
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.55
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.54
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.53
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.53
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.52
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.52
KOG1129	478	consensus TPR repeat-containing protein [General f	99.51
KOG1129	478	consensus TPR repeat-containing protein [General f	99.51
KOG2003	840	consensus TPR repeat-containing protein [General f	99.5
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.48
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.48
PF13041	50	PPR_2: PPR repeat family	99.43
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.41
PF13041	50	PPR_2: PPR repeat family	99.41
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.39
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.38
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.38
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.37
PRK11189	296	lipoprotein NlpI; Provisional	99.35
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.34
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.34
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.34
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.34
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.33
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.33
PRK11189	296	lipoprotein NlpI; Provisional	99.32
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.32
PRK04841	903	transcriptional regulator MalT; Provisional	99.2
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.19
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.17
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.17
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.16
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.16
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.15
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.14
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.14
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.13
KOG1125	579	consensus TPR repeat-containing protein [General f	99.13
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.12
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.11
PLN02789	320	farnesyltranstransferase	99.1
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.07
PLN02789	320	farnesyltranstransferase	99.07
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.05
KOG1125	579	consensus TPR repeat-containing protein [General f	99.05
PRK04841	903	transcriptional regulator MalT; Provisional	99.04
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.03
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.01
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.97
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.96
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.91
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.9
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.88
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.87
PF12854	34	PPR_1: PPR repeat	98.86
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.85
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.84
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.83
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.81
PF12854	34	PPR_1: PPR repeat	98.81
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.8
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.8
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.77
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.77
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.75
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.75
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.74
PRK15359	144	type III secretion system chaperone protein SscB;	98.74
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.74
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.73
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.72
PRK15359	144	type III secretion system chaperone protein SscB;	98.71
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.7
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.69
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.68
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.67
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.59
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.59
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.58
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.57
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.56
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.56
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.55
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.45
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.41
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.41
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.4
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.39
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.34
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.31
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.31
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.31
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.29
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.28
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.18
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.14
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.12
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.11
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.1
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.09
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.07
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.05
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.04
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.03
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.03
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.02
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.02
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.02
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.0
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.97
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.95
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.95
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.94
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.89
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.87
KOG0553	304	consensus TPR repeat-containing protein [General f	97.86
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.84
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.84
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.84
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.81
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.81
PF12688	120	TPR_5: Tetratrico peptide repeat	97.75
PF12688	120	TPR_5: Tetratrico peptide repeat	97.74
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.73
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.72
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.71
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.7
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.68
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.67
KOG0553	304	consensus TPR repeat-containing protein [General f	97.66
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.64
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.62
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.6
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.58
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.56
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.56
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.55
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.53
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.49
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.45
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.45
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.42
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.38
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.34
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.33
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.3
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.29
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.27
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.27
PRK10803	263	tol-pal system protein YbgF; Provisional	97.26
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.22
PRK10803	263	tol-pal system protein YbgF; Provisional	97.21
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.19
PF13371	73	TPR_9: Tetratricopeptide repeat	97.19
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.17
PF13371	73	TPR_9: Tetratricopeptide repeat	97.15
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.15
PRK15331	165	chaperone protein SicA; Provisional	97.14
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.08
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.0
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.0
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.99
PRK15331	165	chaperone protein SicA; Provisional	96.95
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.84
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.77
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.73
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.71
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.67
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.6
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.53
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.49
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.47
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.47
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.4
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.39
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.35
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.26
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.24
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.24
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.23
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.23
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.2
KOG3941	406	consensus Intermediate in Toll signal transduction	96.2
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.17
PF13428	44	TPR_14: Tetratricopeptide repeat	96.13
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.01
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.0
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.99
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.96
KOG3941	406	consensus Intermediate in Toll signal transduction	95.95
PF13428	44	TPR_14: Tetratricopeptide repeat	95.85
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.85
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.82
KOG4555	175	consensus TPR repeat-containing protein [Function	95.8
PRK11906	458	transcriptional regulator; Provisional	95.8
PRK11906	458	transcriptional regulator; Provisional	95.68
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.67
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.66
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.66
KOG1585	308	consensus Protein required for fusion of vesicles	95.65
KOG4555	175	consensus TPR repeat-containing protein [Function	95.58
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.48
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.41
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	95.38
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.35
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.33
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.14
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.97
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.92
PF13512	142	TPR_18: Tetratricopeptide repeat	94.9
KOG1585	308	consensus Protein required for fusion of vesicles	94.8
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.58
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.58
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.49
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.44
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.4
PF13431	34	TPR_17: Tetratricopeptide repeat	94.31
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.24
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.24
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.21
KOG1258	577	consensus mRNA processing protein [RNA processing	94.13
COG0457	291	NrfG FOG: TPR repeat [General function prediction	93.99
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.88
PF13512	142	TPR_18: Tetratricopeptide repeat	93.86
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.71
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.65
KOG4570	418	consensus Uncharacterized conserved protein [Funct	93.59
KOG4570	418	consensus Uncharacterized conserved protein [Funct	93.59
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.5
PF13431	34	TPR_17: Tetratricopeptide repeat	93.46
PF13929	292	mRNA_stabil: mRNA stabilisation	93.21
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.2
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	93.03
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	92.9
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.21
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	91.94
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	91.72
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.64
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	91.63
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.62
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.54
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	91.4
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.35
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.31
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	91.24
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.21
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.19
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	91.06
KOG4234	271	consensus TPR repeat-containing protein [General f	90.9
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.65
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	90.45
COG1747	711	Uncharacterized N-terminal domain of the transcrip	90.2
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	89.91
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.79
KOG1550	552	consensus Extracellular protein SEL-1 and related	89.44
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.37
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.34
KOG1258	577	consensus mRNA processing protein [RNA processing	89.23
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	89.14
KOG1550	552	consensus Extracellular protein SEL-1 and related	89.12
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	89.03
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.01
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	88.96
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	88.95
PRK09687	280	putative lyase; Provisional	88.75
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.64
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.27
PRK11619	644	lytic murein transglycosylase; Provisional	88.25
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	88.21
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	88.11
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	87.98
KOG4234	271	consensus TPR repeat-containing protein [General f	87.97
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	87.71
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.62
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.78
PRK09687	280	putative lyase; Provisional	86.72
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	86.64
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	86.54
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.96
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	85.93
KOG4648	536	consensus Uncharacterized conserved protein, conta	85.92
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.72
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	85.69
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	85.54
KOG4648	536	consensus Uncharacterized conserved protein, conta	85.07
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	84.72
COG1747	711	Uncharacterized N-terminal domain of the transcrip	84.14
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	83.77
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	83.75
COG3947	361	Response regulator containing CheY-like receiver a	82.93
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.68
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	82.57
PHA02875	413	ankyrin repeat protein; Provisional	82.27
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	82.06
COG3947	361	Response regulator containing CheY-like receiver a	82.04
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	80.99
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	80.65
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	80.63
COG5159	421	RPN6 26S proteasome regulatory complex component [	80.51

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=5.1e-66  Score=476.28  Aligned_cols=382  Identities=18%  Similarity=0.266  Sum_probs=336.5

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML   81 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   81 (384)
                      |++++|.++|+.|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus       451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf  530 (1060)
T PLN03218        451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY  530 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            67888899999998888888999999999999999999999999999988888889999999999999999999999999


Q ss_pred             HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 016681           82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLR--KNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGF  159 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  159 (384)
                      +.|.+.++.||..+|+.++.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+
T Consensus       531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi  610 (1060)
T PLN03218        531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI  610 (1060)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            9998888889999999999999999999999999998876  57888888999999999999999999999999988888


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681          160 SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM  239 (384)
Q Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  239 (384)
                      .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.+
T Consensus       611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL  690 (1060)
T PLN03218        611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL  690 (1060)
T ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            88889999999999999999999999999988888899889999999999999999999999999888888899999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 016681          240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKL  319 (384)
Q Consensus       240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  319 (384)
                      |.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++
T Consensus       691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l  770 (1060)
T PLN03218        691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA  770 (1060)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence            99999999999999999998888888899999999999999999999999999998888889999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHhHHHHHHHHHhc-----------------------cCCHHHHHHHHHHHHhCCCCCCcccc
Q 016681          320 EEADKYFKIMKSHSLVPGVDIYESLVGIHLE-----------------------KGNKAKALHLCEEMVSEGLKPSTSYL  376 (384)
Q Consensus       320 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~g~~~~a~~~~~~~~~~~~~p~~~~~  376 (384)
                      ++|.+++++|.+.|+.||..+|+.++..|.+                       .+..++|..+|++|++.|+.||..||
T Consensus       771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~  850 (1060)
T PLN03218        771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL  850 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence            9999999999888888898888888765432                       12346788889999999999998888


Q ss_pred             ccccccc
Q 016681          377 CSASTCR  383 (384)
Q Consensus       377 ~~l~~c~  383 (384)
                      ..++.|.
T Consensus       851 ~~vL~cl  857 (1060)
T PLN03218        851 SQVLGCL  857 (1060)
T ss_pred             HHHHHHh
Confidence            8888774

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=9.4e-66  Score=474.54  Aligned_cols=380  Identities=20%  Similarity=0.302  Sum_probs=367.0

Q ss_pred             cchHHHHHHHHHHHhcCCC--------------------------------CchhhHHHHHHHHhhcCChhHHHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFS--------------------------------LSLISFNTLIHVVTKSDRNDLVWRIYQHM   49 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   49 (384)
                      |++++|+++|++|.+.|+.                                ||..+|+.++.+|++.|+++.|.++|+.|
T Consensus       384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M  463 (1060)
T PLN03218        384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLV  463 (1060)
T ss_pred             cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence            6677777777777776642                                68899999999999999999999999999


Q ss_pred             HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHH
Q 016681           50 LENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTI  129 (384)
Q Consensus        50 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  129 (384)
                      .+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus       464 ~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v  543 (1060)
T PLN03218        464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV  543 (1060)
T ss_pred             HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 016681          130 AYSLIVYAKVKMRNLESALVVYEEMLK--RGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEG  207 (384)
Q Consensus       130 ~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  207 (384)
                      +|+.++.+|++.|++++|.++|++|..  .|+.||..+|++++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+
T Consensus       544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a  623 (1060)
T PLN03218        544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS  623 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence            999999999999999999999999986  578999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 016681          208 CAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEV  287 (384)
Q Consensus       208 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  287 (384)
                      |++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus       624 y~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA  703 (1060)
T PLN03218        624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA  703 (1060)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          288 LKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      .++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.
T Consensus       704 ~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~  783 (1060)
T PLN03218        704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED  783 (1060)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccccc
Q 016681          368 GLKPSTSYLCSAST  381 (384)
Q Consensus       368 ~~~p~~~~~~~l~~  381 (384)
                      |+.||..+|+.++.
T Consensus       784 Gi~pd~~tynsLIg  797 (1060)
T PLN03218        784 GIKPNLVMCRCITG  797 (1060)
T ss_pred             CCCCCHHHHHHHHH
Confidence            99999999887753

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.7e-59  Score=427.73  Aligned_cols=370  Identities=17%  Similarity=0.257  Sum_probs=326.2

Q ss_pred             cchHHHHHHHHHHHhcC-CCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRG-FSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      |++++|+++|++|...+ +.||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++
T Consensus       101 g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l  180 (697)
T PLN03081        101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL  180 (697)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHH
Confidence            78999999999998764 78999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS  160 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  160 (384)
                      |++|.    .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|+.
T Consensus       181 f~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~  256 (697)
T PLN03081        181 FDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV  256 (697)
T ss_pred             HhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC
Confidence            99997    58899999999999999999999999999999999999999999888888888888888888888888888


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 016681          161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI  240 (384)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  240 (384)
                      ||..+|+.++.+|++.|++++|.++|++|.    .+|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus       257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll  332 (697)
T PLN03081        257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI  332 (697)
T ss_pred             ccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            888888888888888888888888888875    3567888888888888888888888888888888888888888888


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 016681          241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLE  320 (384)
Q Consensus       241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  320 (384)
                      .+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.    .||..+|+.||.+|++.|+.+
T Consensus       333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~  408 (697)
T PLN03081        333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGT  408 (697)
T ss_pred             HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHH
Confidence            8888888888888888888888888888888888888888888888888888875    367788888888888888888


Q ss_pred             HHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCCccccccccccc
Q 016681          321 EADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS-EGLKPSTSYLCSASTCR  383 (384)
Q Consensus       321 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~c~  383 (384)
                      +|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++...
T Consensus       409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l  472 (697)
T PLN03081        409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL  472 (697)
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence            8888888888888888888888888888888888888888888876 48888888887776544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=4.2e-58  Score=420.81  Aligned_cols=364  Identities=17%  Similarity=0.258  Sum_probs=308.7

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML   81 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   81 (384)
                      ++++.|.+++..|.+.|+.||..+||.++..|++.|+++.|.++|+.|.+    ||..+|+.++.+|++.|++++|.++|
T Consensus       137 ~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf  212 (697)
T PLN03081        137 KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALF  212 (697)
T ss_pred             CCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence            67788999999999999999999999999999999999999999999853    78999999999999999999999999


Q ss_pred             HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681           82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA  161 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  161 (384)
                      ++|.+.|..|+..+|+.++.++.+.|..+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.+    +
T Consensus       213 ~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~  288 (697)
T PLN03081        213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----K  288 (697)
T ss_pred             HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----C
Confidence            999998888888888888888888888888888888888888888888888888888888888888888888754    4


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681          162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR  241 (384)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  241 (384)
                      |..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+++.++.
T Consensus       289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~  368 (697)
T PLN03081        289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD  368 (697)
T ss_pred             ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence            77888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 016681          242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEE  321 (384)
Q Consensus       242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  321 (384)
                      +|++.|++++|.++|+.|.+    ||..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++
T Consensus       369 ~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~  444 (697)
T PLN03081        369 LYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ  444 (697)
T ss_pred             HHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence            88888888888888887753    57788888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhh-CCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccccccc
Q 016681          322 ADKYFKIMKS-HSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTSYLCSAS  380 (384)
Q Consensus       322 a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  380 (384)
                      |.++|+.|.+ .|+.|+..+|+.++.+|.+.|+.++|.+++++|   ++.|+..+|+.++
T Consensus       445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll  501 (697)
T PLN03081        445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALL  501 (697)
T ss_pred             HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHH
Confidence            8888888875 578888888888888888888888888887665   5677777776554

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.1e-57  Score=427.39  Aligned_cols=367  Identities=15%  Similarity=0.224  Sum_probs=285.3

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML   81 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   81 (384)
                      |++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..|.+.|..||..+|+.++.+|++.|++++|.++|
T Consensus       267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf  346 (857)
T PLN03077        267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF  346 (857)
T ss_pred             CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence            67888999999999889999999999999999999999999999999999899999999999999999999999999999


Q ss_pred             HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681           82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA  161 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  161 (384)
                      ++|.    .||..+|+.++.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|
T Consensus       347 ~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~  422 (857)
T PLN03077        347 SRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS  422 (857)
T ss_pred             hhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence            9886    577889999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681          162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR  241 (384)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  241 (384)
                      +..+|+.++.+|++.|++++|.++|++|.+    +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.
T Consensus       423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~  497 (857)
T PLN03077        423 YVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS  497 (857)
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence            888888888888888888888888888753    4556777777777777777777777777764 36667776666666


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCC------------------------------CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 016681          242 RLCECGNAKQANGMLTLALDKGFS------------------------------PNEITYSHLIGGYAKEGEIQEVLKLY  291 (384)
Q Consensus       242 ~~~~~~~~~~a~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~  291 (384)
                      +|++.|+.+.+.+++..+.+.|+.                              ||..+|+.+|.+|++.|+.++|.++|
T Consensus       498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf  577 (857)
T PLN03077        498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELF  577 (857)
T ss_pred             HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence            655555555555555555554443                              45666666666666666666666666


Q ss_pred             HHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHh-hCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 016681          292 YEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMK-SHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLK  370 (384)
Q Consensus       292 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  370 (384)
                      ++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++.+|.+.|++++|.+++++|   .++
T Consensus       578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~  654 (857)
T PLN03077        578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PIT  654 (857)
T ss_pred             HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCC
Confidence            666666666666666666666666666666666666666 4566666666666666666666666666666666   356


Q ss_pred             CCcccccccc
Q 016681          371 PSTSYLCSAS  380 (384)
Q Consensus       371 p~~~~~~~l~  380 (384)
                      ||..+|..++
T Consensus       655 pd~~~~~aLl  664 (857)
T PLN03077        655 PDPAVWGALL  664 (857)
T ss_pred             CCHHHHHHHH
Confidence            6666665544

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1e-56  Score=421.04  Aligned_cols=374  Identities=17%  Similarity=0.194  Sum_probs=272.6

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML   81 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   81 (384)
                      |++++|+++|++|...|+.||..+|++++++|+..+++..+.+++..+.+.|..||..+++.++.+|++.|+++.|.++|
T Consensus       166 g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf  245 (857)
T PLN03077        166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF  245 (857)
T ss_pred             CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence            67889999999998888888888888888888877777777777777777777777777888888888888888888888


Q ss_pred             HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681           82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA  161 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  161 (384)
                      ++|.    .||..+||.++.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.|
T Consensus       246 ~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~  321 (857)
T PLN03077        246 DRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV  321 (857)
T ss_pred             hcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence            8775    466777888888888888888888888888887777887788877777777777777777777777777777


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681          162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR  241 (384)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  241 (384)
                      |..+|+.++.+|++.|++++|.++|++|.    .||..+|+.++.+|.+.|++++|.++|++|.+.++.||..+|+.++.
T Consensus       322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~  397 (857)
T PLN03077        322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS  397 (857)
T ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence            77777777777777777777777777664    35556677777777777777777777776666666666666666666


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------------
Q 016681          242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK------------------------  297 (384)
Q Consensus       242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------  297 (384)
                      +|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+.                        
T Consensus       398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~l  477 (857)
T PLN03077        398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF  477 (857)
T ss_pred             HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence            66666666666666666666666666666666666666666555555555554321                        


Q ss_pred             ------CCCC-----------------------------------------------------------------ChhhH
Q 016681          298 ------SISP-----------------------------------------------------------------TLPAY  306 (384)
Q Consensus       298 ------~~~~-----------------------------------------------------------------~~~~~  306 (384)
                            ++.|                                                                 |..+|
T Consensus       478 f~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~  557 (857)
T PLN03077        478 FRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW  557 (857)
T ss_pred             HHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhH
Confidence                  2233                                                                 34456


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH-hCCCCCCccccccccccc
Q 016681          307 TSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV-SEGLKPSTSYLCSASTCR  383 (384)
Q Consensus       307 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~c~  383 (384)
                      +.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|++|. +.|+.|+..+|++++.+.
T Consensus       558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l  635 (857)
T PLN03077        558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL  635 (857)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            66666677777777777777777777777777777777777777777777777777777 457777777777666543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=1.6e-26  Score=221.73  Aligned_cols=356  Identities=14%  Similarity=0.088  Sum_probs=256.7

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      .|++++|.+.|+.+.+.. +.+..++..+...+.+.|+.++|..+++++.+.+. .+...+..++..+...|++++|..+
T Consensus       512 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~  589 (899)
T TIGR02917       512 EGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAI  589 (899)
T ss_pred             CCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHH
Confidence            367888888888887764 44677788888888888888888888888776543 3566677777888888888888888


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS  160 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  160 (384)
                      ++.+.... +.+...|..+...+...|++++|.+.|+++.+... .+...+..+...+.+.|++++|..+++++.+.. +
T Consensus       590 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~  666 (899)
T TIGR02917       590 LNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-P  666 (899)
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence            88877655 56677788888888888888888888888776543 256667777777888888888888888777653 2


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 016681          161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI  240 (384)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  240 (384)
                      .+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...++.+....+  +..++..+.
T Consensus       667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~  743 (899)
T TIGR02917       667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLH  743 (899)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHH
Confidence            356677777777778888888888887777665 44556677777777777778888777777776543  335666677


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 016681          241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLE  320 (384)
Q Consensus       241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  320 (384)
                      .++.+.|++++|...++.+.+..+ .+...+..+...|...|++++|...|+++.+.. +++..+++.+...+...|+ .
T Consensus       744 ~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~  820 (899)
T TIGR02917       744 RALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-P  820 (899)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-H
Confidence            777777777777777777776543 366677777777777777777777777777664 4556667777777777777 6


Q ss_pred             HHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681          321 EADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       321 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  368 (384)
                      +|...++++.+..+. +..++..+...+...|++++|...++++.+.+
T Consensus       821 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  867 (899)
T TIGR02917       821 RALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIA  867 (899)
T ss_pred             HHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            677777776664333 45556666666777777777777777777654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=3.2e-26  Score=219.61  Aligned_cols=352  Identities=12%  Similarity=0.014  Sum_probs=163.8

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML   81 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   81 (384)
                      |++++|...++.+.+.+ +.+...+..+...+.+.|++++|..+++.+.+.. +.+...|..+...+...|++++|...|
T Consensus       547 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  624 (899)
T TIGR02917       547 GNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSF  624 (899)
T ss_pred             CCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34445555555544432 2234444444455555555555555555444332 223444444555555555555555555


Q ss_pred             HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681           82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA  161 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  161 (384)
                      +++.+.. +.+...+..+...+...|++++|...++++.+.... +..++..+...+...|++++|.++++.+.+.. +.
T Consensus       625 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~  701 (899)
T TIGR02917       625 KKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PK  701 (899)
T ss_pred             HHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence            5544433 333444444444455555555555555554443211 34444444445555555555555555544432 22


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681          162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR  241 (384)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  241 (384)
                      +...+..+...+...|++++|.+.|+.+...+  |+..++..+...+.+.|++++|.+.+..+.+..+. +...+..+..
T Consensus       702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~  778 (899)
T TIGR02917       702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAE  778 (899)
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            33444444444555555555555555444432  22234444444445555555555555544443322 3444444444


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 016681          242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEE  321 (384)
Q Consensus       242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  321 (384)
                      .+...|++++|...|+.+.+..+ .+...++.+...+...|+ .+|...++++.+.. +.+..++..+...+...|++++
T Consensus       779 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~  855 (899)
T TIGR02917       779 LYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADR  855 (899)
T ss_pred             HHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH
Confidence            55555555555555555444432 244444444444444444 44555555444432 2223334444444445555555


Q ss_pred             HHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681          322 ADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV  365 (384)
Q Consensus       322 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  365 (384)
                      |...++++.+.++. +..++..+..++.+.|++++|.+++++|+
T Consensus       856 A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       856 ALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            55555555544333 44444445555555555555555555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.96  E-value=8.6e-25  Score=189.09  Aligned_cols=306  Identities=14%  Similarity=0.137  Sum_probs=245.8

Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcC
Q 016681           66 SALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHD---TIAYSLIVYAKVKMR  142 (384)
Q Consensus        66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~  142 (384)
                      ..+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++   ...+..+...+.+.|
T Consensus        43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            34567788899999999988876 56677888888888899999999999988887543222   245777888888999


Q ss_pred             ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCchHHHH
Q 016681          143 NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPY----DETFNLLIEGCAKAKRIEESL  218 (384)
Q Consensus       143 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~  218 (384)
                      +++.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.    ...+..+...+.+.|++++|.
T Consensus       122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  200 (389)
T PRK11788        122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR  200 (389)
T ss_pred             CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            9999999999988753 34677888899999999999999999999887653222    123456677788889999999


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016681          219 SYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKS  298 (384)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  298 (384)
                      ..++++.+.... +...+..+...+.+.|++++|...++++.+.+......+++.++.+|...|++++|...++++.+..
T Consensus       201 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~  279 (389)
T PRK11788        201 ALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY  279 (389)
T ss_pred             HHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999998876533 4667778889999999999999999999876443335678889999999999999999999998764


Q ss_pred             CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCccc
Q 016681          299 ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLE---KGNKAKALHLCEEMVSEGLKPSTSY  375 (384)
Q Consensus       299 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~  375 (384)
                        |+...+..++..+.+.|++++|..+++++.+.  .|+...+..++..+..   .|+.+++..++++|.+.+++|++.+
T Consensus       280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~  355 (389)
T PRK11788        280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY  355 (389)
T ss_pred             --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence              66677788899999999999999999988875  4788888888877664   5689999999999999999888876


Q ss_pred             ccc
Q 016681          376 LCS  378 (384)
Q Consensus       376 ~~~  378 (384)
                      .|+
T Consensus       356 ~c~  358 (389)
T PRK11788        356 RCR  358 (389)
T ss_pred             ECC
Confidence            653

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.94  E-value=2.3e-23  Score=180.19  Aligned_cols=303  Identities=12%  Similarity=0.089  Sum_probs=253.1

Q ss_pred             HHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc---HHhHHHHHHHHHhh
Q 016681           30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM---VIVNTSLILRIIQE  106 (384)
Q Consensus        30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~  106 (384)
                      ...+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++   ...+..+...+.+.
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            4456788999999999999998643 3567889999999999999999999999987542221   35678889999999


Q ss_pred             cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hHHHHHHHHHHHhcCCHHHH
Q 016681          107 ERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSAN----SFVYTTFIGAYCEYGKIEEA  182 (384)
Q Consensus       107 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a  182 (384)
                      |++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+.    ...+..+...+.+.|++++|
T Consensus       121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            99999999999998763 34678899999999999999999999999988754332    22456677888999999999


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681          183 NCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK  262 (384)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  262 (384)
                      ...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.++.....++..++.+|...|++++|...++.+.+.
T Consensus       200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE  278 (389)
T ss_pred             HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999998764 33456788888999999999999999999988754434567888999999999999999999999886


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHhhCCCCCCHh
Q 016681          263 GFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQ---CGKLEEADKYFKIMKSHSLVPGVD  339 (384)
Q Consensus       263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~  339 (384)
                      .  |+...+..++..+.+.|++++|..+++++.+.  .|+..+++.++..+..   .|+.+++..+++++.+.++.|++.
T Consensus       279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            3  56667788999999999999999999999876  5888889888887764   568999999999999877777666

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.94  E-value=4.4e-21  Score=174.43  Aligned_cols=359  Identities=9%  Similarity=-0.057  Sum_probs=280.6

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      .|++++|+..|+...+.  .|+...|..+..+|.+.|++++|++.++..++... .+...+..+..++...|++++|+..
T Consensus       140 ~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~~eA~~~  216 (615)
T TIGR00990       140 NKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKYADALLD  216 (615)
T ss_pred             cCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            47899999999999876  56888899999999999999999999999988643 2577888899999999999999876


Q ss_pred             HHHHHhCCC-----------------------------CCcHHhHHHHHH------------------------------
Q 016681           81 LDRIHGKRC-----------------------------SPMVIVNTSLIL------------------------------  101 (384)
Q Consensus        81 ~~~~~~~~~-----------------------------~~~~~~~~~l~~------------------------------  101 (384)
                      |..+...+.                             +++...+..+..                              
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (615)
T TIGR00990       217 LTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ  296 (615)
T ss_pred             HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence            654332110                             111001000000                              


Q ss_pred             HH------HhhcchHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 016681          102 RI------IQEERIEEGMVLLKRMLRKN-MIH-DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAY  173 (384)
Q Consensus       102 ~~------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  173 (384)
                      ..      ...+++++|.+.|++....+ ..| ....+..+...+...|++++|...+++..+... .+...|..+...+
T Consensus       297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~  375 (615)
T TIGR00990       297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMN  375 (615)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHH
Confidence            00      11257889999999998765 223 456678888888999999999999999988632 2466888889999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH
Q 016681          174 CEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQAN  253 (384)
Q Consensus       174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  253 (384)
                      ...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+..+. +...+..+..++.+.|++++|.
T Consensus       376 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~  453 (615)
T TIGR00990       376 LELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSM  453 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999998764 445678888999999999999999999999987654 6677888889999999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh------hHHHHHHHHHhcCChHHHHHHHH
Q 016681          254 GMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP------AYTSLISSLCQCGKLEEADKYFK  327 (384)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~  327 (384)
                      ..++...+.. +.+...++.+...+...|++++|...|++..+.....+..      .++.....+...|++++|..+++
T Consensus       454 ~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~  532 (615)
T TIGR00990       454 ATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE  532 (615)
T ss_pred             HHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            9999998764 3367889999999999999999999999988764211111      11222223344699999999999


Q ss_pred             HHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          328 IMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       328 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      +..+.++. +...+..+...+.+.|++++|...|++..+.
T Consensus       533 kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       533 KALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            98886543 4567889999999999999999999998764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.93  E-value=3.4e-21  Score=174.65  Aligned_cols=333  Identities=11%  Similarity=0.064  Sum_probs=177.5

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681           26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ  105 (384)
Q Consensus        26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  105 (384)
                      ...++..+.+.|++++|..+++........ +...+..++.+....|++++|...++++.... |.+...+..+...+..
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~  122 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK  122 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence            334445555666666666666666554332 23334444444555666666666666665554 4445555556666666


Q ss_pred             hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 016681          106 EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCL  185 (384)
Q Consensus       106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  185 (384)
                      .|++++|.+.++++...... +...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus       123 ~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~  199 (656)
T PRK15174        123 SKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL  199 (656)
T ss_pred             cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence            66666666666666554222 4445555556666666666666666655444222 22222222 235556666666666


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH----HHHHHHHHHh
Q 016681          186 MQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQ----ANGMLTLALD  261 (384)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~  261 (384)
                      ++.+.+....++...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++    |...++.+.+
T Consensus       200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~  278 (656)
T PRK15174        200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ  278 (656)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence            666554432222233333445555566666666666666555432 44555555666666666553    5566666555


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHH
Q 016681          262 KGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIY  341 (384)
Q Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  341 (384)
                      ..+. +...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...++++.+.++. +...+
T Consensus       279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~  355 (656)
T PRK15174        279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWN  355 (656)
T ss_pred             hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHH
Confidence            4322 45555566666666666666666666665543 223344455555666666666666666666554322 12223


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          342 ESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       342 ~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      ..+..++...|++++|...|++..+.
T Consensus       356 ~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        356 RYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            33344555666666666666665543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.93  E-value=4.5e-21  Score=173.86  Aligned_cols=323  Identities=11%  Similarity=0.010  Sum_probs=268.2

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML   81 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   81 (384)
                      |++++|..+++....... -+...+..++.+....|++++|...++.+.+..+ .+...+..+...+...|++++|...+
T Consensus        56 g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l  133 (656)
T PRK15174         56 DETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLA  133 (656)
T ss_pred             CCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            789999999999988753 4566666777888889999999999999998643 35778888899999999999999999


Q ss_pred             HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681           82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA  161 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  161 (384)
                      ++..... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+....+
T Consensus       134 ~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~  210 (656)
T PRK15174        134 EQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALE  210 (656)
T ss_pred             HHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            9999875 667889999999999999999999999988776544 33344333 34788999999999999988764444


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHH----HHHHHHHHHhCCCCCChhhHH
Q 016681          162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEE----SLSYCEQMMSRKLLPSCSAFN  237 (384)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~  237 (384)
                      +......+..++...|++++|+..+++..+.. +.+...+..+...+...|++++    |...+++..+..+. +...+.
T Consensus       211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~  288 (656)
T PRK15174        211 RQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVT  288 (656)
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHH
Confidence            55555666788999999999999999998765 4456778888899999999885    89999999987654 678899


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhc
Q 016681          238 EMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP-AYTSLISSLCQC  316 (384)
Q Consensus       238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~  316 (384)
                      .+...+...|++++|...++++.+..+. +...+..+...+.+.|++++|...++++.+.+  |+.. .+..+..++...
T Consensus       289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~  365 (656)
T PRK15174        289 LYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQA  365 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHC
Confidence            9999999999999999999999987543 56778888999999999999999999998764  4443 344456788999


Q ss_pred             CChHHHHHHHHHHhhCCC
Q 016681          317 GKLEEADKYFKIMKSHSL  334 (384)
Q Consensus       317 g~~~~a~~~~~~~~~~~~  334 (384)
                      |++++|...|++..+..+
T Consensus       366 G~~deA~~~l~~al~~~P  383 (656)
T PRK15174        366 GKTSEAESVFEHYIQARA  383 (656)
T ss_pred             CCHHHHHHHHHHHHHhCh
Confidence            999999999999987643

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.93  E-value=1.1e-20  Score=182.62  Aligned_cols=365  Identities=11%  Similarity=0.045  Sum_probs=264.7

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCC-CHHHH------------HHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYP-NEATI------------RTLISA   67 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l~~~   67 (384)
                      .|++++|+..|++..+.. +.+..++..+..++.+.|++++|+..|++..+..... +...+            ......
T Consensus       282 ~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~  360 (1157)
T PRK11447        282 SGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA  360 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence            378999999999998874 4478889999999999999999999999998764322 11112            122445


Q ss_pred             HHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHH-------------
Q 016681           68 LCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLI-------------  134 (384)
Q Consensus        68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------  134 (384)
                      +.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++.+.... +...+..+             
T Consensus       361 ~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~  438 (1157)
T PRK11447        361 ALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKAL  438 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHH
Confidence            678899999999999999876 667788888999999999999999999998876432 23333222             


Q ss_pred             -----------------------------HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 016681          135 -----------------------------VYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCL  185 (384)
Q Consensus       135 -----------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  185 (384)
                                                   ...+...|++++|.+.+++..+.... +...+..+...|.+.|++++|...
T Consensus       439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~  517 (1157)
T PRK11447        439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADAL  517 (1157)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence                                         23344678888888888888876433 566777788889999999999999


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhC--------------------------------------
Q 016681          186 MQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSR--------------------------------------  227 (384)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------------------  227 (384)
                      ++++.+.. +.+...+..+...+...++.++|...++.+...                                      
T Consensus       518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l  596 (1157)
T PRK11447        518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL  596 (1157)
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence            98887643 222233322222333444444444443332110                                      


Q ss_pred             -CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH
Q 016681          228 -KLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAY  306 (384)
Q Consensus       228 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  306 (384)
                       ..+.+...+..+...+.+.|++++|...++.+.+..+. +...+..+...+...|++++|.+.++...+.. +.+..++
T Consensus       597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~  674 (1157)
T PRK11447        597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQ  674 (1157)
T ss_pred             HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHH
Confidence             11234556677788888999999999999999887443 67888889999999999999999999887653 2345566


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhCCCC--C---CHhHHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCC
Q 016681          307 TSLISSLCQCGKLEEADKYFKIMKSHSLV--P---GVDIYESLVGIHLEKGNKAKALHLCEEMVS-EGLKPS  372 (384)
Q Consensus       307 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~  372 (384)
                      ..+..++...|++++|.++++++......  |   +...+..+...+...|++++|...|++.+. .|+.|+
T Consensus       675 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~  746 (1157)
T PRK11447        675 RRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT  746 (1157)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence            67778888999999999999998875322  1   224566667888899999999999998764 355543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=2.7e-21  Score=161.89  Aligned_cols=364  Identities=15%  Similarity=0.121  Sum_probs=292.7

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHccCChHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEAT-IRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~   80 (384)
                      |++++|+.+++.+.+.. +-.+..|-.+..++...|+.+.|.+.|...++.  .|+... .+.+...+...|++++|...
T Consensus       130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c  206 (966)
T KOG4626|consen  130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC  206 (966)
T ss_pred             chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence            67788888888888764 336788888888888888888888888887774  455443 33344445557888888888


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS  160 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  160 (384)
                      |.+..... +.-...|+.|...+-..|+...|++.|++.+..+.. -...|..|...|...+.+++|...+.+.......
T Consensus       207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn  284 (966)
T KOG4626|consen  207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN  284 (966)
T ss_pred             HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence            88777664 344667888888888899999999999998876432 3567888889999999999999999888775322


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681          161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPY-DETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM  239 (384)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  239 (384)
                       ....+..+...|...|.++-|+..|++..+..  |+ ...|+.+..++-..|+..+|...+.+.....+. .....+.+
T Consensus       285 -~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NL  360 (966)
T KOG4626|consen  285 -HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNL  360 (966)
T ss_pred             -chhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHH
Confidence             56678888888999999999999999988753  44 468999999999999999999999999887544 56788889


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCC
Q 016681          240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT-LPAYTSLISSLCQCGK  318 (384)
Q Consensus       240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~  318 (384)
                      ...+...|.++.|..+|....+-.+. -...++.|...|-+.|++++|+..|++....  .|+ ...|+.+...|-..|+
T Consensus       361 gni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~  437 (966)
T KOG4626|consen  361 GNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGD  437 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhh
Confidence            99999999999999999998875322 3567899999999999999999999998864  555 4578889999999999


Q ss_pred             hHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc-cccccc
Q 016681          319 LEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTS-YLCSAS  380 (384)
Q Consensus       319 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~  380 (384)
                      .+.|.+.+.+.+..++. -.+.++.|...|..+|+..+|+.-+++.++  ++||.. .||-++
T Consensus       438 v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNll  497 (966)
T KOG4626|consen  438 VSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLL  497 (966)
T ss_pred             HHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHH
Confidence            99999999999886543 357789999999999999999999999885  567753 444443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.90  E-value=1.3e-18  Score=161.28  Aligned_cols=359  Identities=13%  Similarity=0.043  Sum_probs=259.3

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      .|+.++|++++....... +.+...+..+..++...|++++|.++|+...+..+ .+...+..+...+...|++++|+..
T Consensus        28 ~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~g~~~eA~~~  105 (765)
T PRK10049         28 AGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLADAGQYDEALVK  105 (765)
T ss_pred             cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478899999999988632 45666788999999999999999999999887632 3566777888888999999999999


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH---------
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVY---------  151 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~---------  151 (384)
                      ++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+. +...+..+...+...+..+.|.+.+         
T Consensus       106 l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~  182 (765)
T PRK10049        106 AKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE  182 (765)
T ss_pred             HHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH
Confidence            99998875 66667 888888999999999999999999887544 5555555566665555555444333         


Q ss_pred             -------------------------------------HHHHHc-CCCCChH-HHH----HHHHHHHhcCCHHHHHHHHHH
Q 016681          152 -------------------------------------EEMLKR-GFSANSF-VYT----TFIGAYCEYGKIEEANCLMQE  188 (384)
Q Consensus       152 -------------------------------------~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~  188 (384)
                                                           +.+.+. ...|+.. .+.    ..+..+...|++++|+..|+.
T Consensus       183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~  262 (765)
T PRK10049        183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR  262 (765)
T ss_pred             HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence                                                 333322 1112111 111    113344567888899999988


Q ss_pred             HHHcCCC-CChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 016681          189 MENAGLK-PYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP---SCSAFNEMIRRLCECGNAKQANGMLTLALDKGF  264 (384)
Q Consensus       189 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  264 (384)
                      +.+.+.. |+. ....+..+|...|++++|+..|+++.+.....   .......+..++...|++++|...++.+....+
T Consensus       263 ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P  341 (765)
T PRK10049        263 LKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP  341 (765)
T ss_pred             hhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence            8876521 321 22224667888899999999998887654321   123455666677888999999999888876532


Q ss_pred             -----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHh
Q 016681          265 -----------SPN---EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMK  330 (384)
Q Consensus       265 -----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  330 (384)
                                 .|+   ...+..+...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.+++..
T Consensus       342 ~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al  420 (765)
T PRK10049        342 PFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAE  420 (765)
T ss_pred             ceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                       122   2244566677788899999999999887764 5566777888888888999999999999888


Q ss_pred             hCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          331 SHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       331 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      +..+. +...+...+..+...|++++|..+++++++.
T Consensus       421 ~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        421 VLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             hhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            86533 4566777777888889999999999888764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.90  E-value=1.8e-18  Score=167.56  Aligned_cols=359  Identities=13%  Similarity=0.049  Sum_probs=232.1

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCC------------------C--------
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIR------------------Y--------   55 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~--------   55 (384)
                      |++++|++.++.+.+.. +.+...+..+...+...|+.++|++.++++.+...                  .        
T Consensus       161 g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~  239 (1157)
T PRK11447        161 AQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQ  239 (1157)
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHH
Confidence            67778888888887764 44667777888888888888888888887654210                  0        


Q ss_pred             ------CCHHHH---------------------HHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcc
Q 016681           56 ------PNEATI---------------------RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEER  108 (384)
Q Consensus        56 ------~~~~~~---------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  108 (384)
                            |+....                     ......+...|++++|+..|++..+.. +.+...+..+...+.+.|+
T Consensus       240 ~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~  318 (1157)
T PRK11447        240 KYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGD  318 (1157)
T ss_pred             HHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence                  110000                     011334556788888888888888765 5577888888888888888


Q ss_pred             hHHHHHHHHHHHHcCCCC-CHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 016681          109 IEEGMVLLKRMLRKNMIH-DTIAY------------SLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCE  175 (384)
Q Consensus       109 ~~~a~~~~~~~~~~~~~~-~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (384)
                      +++|+..|++..+..... ....+            ......+.+.|++++|...|+++.+... .+...+..+..++..
T Consensus       319 ~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~  397 (1157)
T PRK11447        319 RARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMA  397 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence            888888888887754322 11111            1123456677888888888888877633 355666777888888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCChhhHHH------------------------------------------HHHHHHhcCc
Q 016681          176 YGKIEEANCLMQEMENAGLKPYDETFNL------------------------------------------LIEGCAKAKR  213 (384)
Q Consensus       176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------------------------------------l~~~~~~~~~  213 (384)
                      .|++++|++.|++..+.. +.+...+..                                          +...+...|+
T Consensus       398 ~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~  476 (1157)
T PRK11447        398 RKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK  476 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC
Confidence            888888888888877643 122222221                                          2233445677


Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----------------------------
Q 016681          214 IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFS----------------------------  265 (384)
Q Consensus       214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------------------------  265 (384)
                      +++|.+.+++..+..+. +...+..+...+.+.|++++|...++.+.+..+.                            
T Consensus       477 ~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l  555 (1157)
T PRK11447        477 WAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTL  555 (1157)
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            88888888887776544 5566677777788888888888888777654221                            


Q ss_pred             ---------------------------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 016681          266 ---------------------------------------------PNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS  300 (384)
Q Consensus       266 ---------------------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  300 (384)
                                                                   .+...+..+...+.+.|++++|...|++..+.. +
T Consensus       556 ~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P  634 (1157)
T PRK11447        556 PRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-P  634 (1157)
T ss_pred             CchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence                                                         111122334444455566666666666666553 3


Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       301 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      .+...+..+...+...|++++|.+.++...+.... +...+..+..++...|++++|.++++++...
T Consensus       635 ~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        635 GNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence            34556666666777777777777777766554322 3455556666666777777777777776654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=1.4e-18  Score=158.19  Aligned_cols=340  Identities=11%  Similarity=0.015  Sum_probs=263.7

Q ss_pred             hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681           25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII  104 (384)
Q Consensus        25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  104 (384)
                      .+......+.+.|++++|+..|++.++.  .|+...|..+..++.+.|++++|++.++...+.+ +.+...+..+..++.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3556677889999999999999998874  5788889999999999999999999999999886 667889999999999


Q ss_pred             hhcchHHHHHHHHHHHHcCCC----------------------------C----CHHHHHHH------------------
Q 016681          105 QEERIEEGMVLLKRMLRKNMI----------------------------H----DTIAYSLI------------------  134 (384)
Q Consensus       105 ~~~~~~~a~~~~~~~~~~~~~----------------------------~----~~~~~~~l------------------  134 (384)
                      ..|++++|+..|......+..                            |    ........                  
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            999999998766544321100                            0    00000000                  


Q ss_pred             ---------HHHH------HhcCChHHHHHHHHHHHHcC-C-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 016681          135 ---------VYAK------VKMRNLESALVVYEEMLKRG-F-SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPY  197 (384)
Q Consensus       135 ---------l~~~------~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  197 (384)
                               +...      ...+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++..+.. +.+
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~  364 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV  364 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence                     0000      11257888999999988764 2 2245668888889999999999999999998764 233


Q ss_pred             hhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016681          198 DETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGG  277 (384)
Q Consensus       198 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  277 (384)
                      ...|..+...+...|++++|...+++..+..+. +..++..+...+...|++++|...|+...+..+. +...+..+...
T Consensus       365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~  442 (615)
T TIGR00990       365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVT  442 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHH
Confidence            567888888899999999999999999887644 6788999999999999999999999999987533 67778888899


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHh------HHHHHHHHHhcc
Q 016681          278 YAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVD------IYESLVGIHLEK  351 (384)
Q Consensus       278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~  351 (384)
                      +.+.|++++|...|++..+.. +.+...++.+...+...|++++|...|++..+.....+..      .++.....+...
T Consensus       443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~  521 (615)
T TIGR00990       443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK  521 (615)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence            999999999999999998763 4457788999999999999999999999988754331111      122222334457


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCc
Q 016681          352 GNKAKALHLCEEMVSEGLKPST  373 (384)
Q Consensus       352 g~~~~a~~~~~~~~~~~~~p~~  373 (384)
                      |++++|.+++++..+..  |+.
T Consensus       522 ~~~~eA~~~~~kAl~l~--p~~  541 (615)
T TIGR00990       522 QDFIEAENLCEKALIID--PEC  541 (615)
T ss_pred             hhHHHHHHHHHHHHhcC--CCc
Confidence            99999999999988653  544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=2.3e-19  Score=150.53  Aligned_cols=335  Identities=16%  Similarity=0.113  Sum_probs=267.5

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      -..+|..+...+-..|++++|+.+|+.+++...+ ....|..+..++...|+.+.|.+.|.+..+.+ +......+.+..
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgn  192 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGN  192 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhH
Confidence            4567888888888889999999999888885332 57788888888888999999988888888764 333344445556


Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE  181 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (384)
                      .+...|+.++|...|.+.++.... -...|+.|...+-.+|+...|...|++..+.... -...|-.|...|...+.+++
T Consensus       193 Llka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~  270 (966)
T KOG4626|consen  193 LLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDR  270 (966)
T ss_pred             HHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchH
Confidence            666788888888888888776432 3557888888888899999999999988876322 35678888899999999999


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681          182 ANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALD  261 (384)
Q Consensus       182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  261 (384)
                      |...|.+..... +.....+..+...|...|..+-|+..+++..+..+. =...|+.+..++-..|++.+|++.+...+.
T Consensus       271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~  348 (966)
T KOG4626|consen  271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALR  348 (966)
T ss_pred             HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence            999998877653 334567777888888899999999999999887543 366899999999999999999999999888


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HhH
Q 016681          262 KGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPG-VDI  340 (384)
Q Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~  340 (384)
                      .... .....+.|...|...|.+++|..+|....+-. +--....+.|...|-++|++++|+..+++.++.  .|+ ...
T Consensus       349 l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda  424 (966)
T KOG4626|consen  349 LCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADA  424 (966)
T ss_pred             hCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHH
Confidence            6433 56788889999999999999999999888753 222456788999999999999999999998874  444 567


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          341 YESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       341 ~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      ++.+...|...|+.+.|.+.+.+.+.
T Consensus       425 ~~NmGnt~ke~g~v~~A~q~y~rAI~  450 (966)
T KOG4626|consen  425 LSNMGNTYKEMGDVSAAIQCYTRAIQ  450 (966)
T ss_pred             HHhcchHHHHhhhHHHHHHHHHHHHh
Confidence            88899999999999999999988875

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.86  E-value=1.6e-16  Score=147.53  Aligned_cols=345  Identities=12%  Similarity=0.068  Sum_probs=261.1

Q ss_pred             CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 016681           20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSL   99 (384)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   99 (384)
                      +.+..-..-.+.+....|+.++|+++|....... ..+...+..+...+...|++++|..+|++..+.. +.+...+..+
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   89 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL   89 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            4566666677788899999999999999997632 3456678999999999999999999999998876 6678888899


Q ss_pred             HHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 016681          100 ILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKI  179 (384)
Q Consensus       100 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (384)
                      ...+...|++++|+..++++.+.... +.. +..+..++...|+.++|...++++.+.... +...+..+..++...+..
T Consensus        90 a~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~  166 (765)
T PRK10049         90 ILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS  166 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence            99999999999999999999987433 555 888888999999999999999999987443 555555666666666665


Q ss_pred             HHHHHHHH----------------------------------------------HHHHc-CCCCChh-hHH----HHHHH
Q 016681          180 EEANCLMQ----------------------------------------------EMENA-GLKPYDE-TFN----LLIEG  207 (384)
Q Consensus       180 ~~a~~~~~----------------------------------------------~~~~~-~~~~~~~-~~~----~l~~~  207 (384)
                      ++|++.++                                              .+.+. ...|+.. .+.    ..+..
T Consensus       167 e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~  246 (765)
T PRK10049        167 APALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA  246 (765)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence            55444333                                              33322 1122211 111    11334


Q ss_pred             HHhcCchHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCC
Q 016681          208 CAKAKRIEESLSYCEQMMSRKLL-PSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP---NEITYSHLIGGYAKEGE  283 (384)
Q Consensus       208 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~  283 (384)
                      +...|++++|+..|+.+.+.+.. |+. ....+..++...|++++|...|+.+.+.....   .......+..++...|+
T Consensus       247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~  325 (765)
T PRK10049        247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN  325 (765)
T ss_pred             HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence            56778999999999999887643 332 22335778999999999999999987653221   13456667778889999


Q ss_pred             HHHHHHHHHHHHhcCC-----------CCC---hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHh
Q 016681          284 IQEVLKLYYEMEYKSI-----------SPT---LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHL  349 (384)
Q Consensus       284 ~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  349 (384)
                      +++|..+++.+.+...           .|+   ...+..+...+...|++++|++.++++....+. +...+..+...+.
T Consensus       326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~  404 (765)
T PRK10049        326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQ  404 (765)
T ss_pred             HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            9999999999886531           122   124456777888999999999999999887554 6788999999999


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCc
Q 016681          350 EKGNKAKALHLCEEMVSEGLKPST  373 (384)
Q Consensus       350 ~~g~~~~a~~~~~~~~~~~~~p~~  373 (384)
                      ..|++++|++.+++..+.  .|+.
T Consensus       405 ~~g~~~~A~~~l~~al~l--~Pd~  426 (765)
T PRK10049        405 ARGWPRAAENELKKAEVL--EPRN  426 (765)
T ss_pred             hcCCHHHHHHHHHHHHhh--CCCC
Confidence            999999999999998864  4664

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.86  E-value=2.1e-16  Score=144.33  Aligned_cols=364  Identities=12%  Similarity=0.051  Sum_probs=258.2

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      .|+++.|++.|++..+....-.+..+ .++..+...|+.++|+..+++.... ..........+...+...|++++|+++
T Consensus        47 ~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiel  124 (822)
T PRK14574         47 AGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALAL  124 (822)
T ss_pred             CCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            47889999999999887422112334 8888888889999999999998732 112334444446678888999999999


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS  160 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  160 (384)
                      |+++.+.. +.+...+..++..+...++.++|++.++++....  |+...+..++..+...++..+|.+.++++.+....
T Consensus       125 y~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~  201 (822)
T PRK14574        125 WQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT  201 (822)
T ss_pred             HHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence            99999887 6667888888888999999999999999988764  44445544444444456666699999998887432


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHH------------------------------------------------HHHHHc
Q 016681          161 ANSFVYTTFIGAYCEYGKIEEANCLM------------------------------------------------QEMENA  192 (384)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~~~~a~~~~------------------------------------------------~~~~~~  192 (384)
                       +...+..+..+..+.|-...|.++.                                                +.+...
T Consensus       202 -n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~  280 (822)
T PRK14574        202 -SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR  280 (822)
T ss_pred             -CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence             5555555656655555433333322                                                222221


Q ss_pred             -CCCCCh-h----hHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---
Q 016681          193 -GLKPYD-E----TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKG---  263 (384)
Q Consensus       193 -~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---  263 (384)
                       +..|.. .    ...-.+-++...+++.++++.++.+...+.+....+-..+..+|...+++++|..+++.+....   
T Consensus       281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~  360 (822)
T PRK14574        281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT  360 (822)
T ss_pred             ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence             111221 1    1123345677788899999999999988766566688888999999999999999999886643   


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------CCC--hh-hHHHHHHHHHhcCChHHHHHHHH
Q 016681          264 --FSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSI-----------SPT--LP-AYTSLISSLCQCGKLEEADKYFK  327 (384)
Q Consensus       264 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~--~~-~~~~l~~~~~~~g~~~~a~~~~~  327 (384)
                        ..++......|.-++...+++++|..+++++.+...           .||  -. .+..++..+...|+..+|++.++
T Consensus       361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le  440 (822)
T PRK14574        361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE  440 (822)
T ss_pred             cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence              123444457788888999999999999999887311           122  12 33445677888999999999999


Q ss_pred             HHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 016681          328 IMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPST  373 (384)
Q Consensus       328 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~  373 (384)
                      ++....+. |......+...+...|++.+|...++.....  .|+.
T Consensus       441 ~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~  483 (822)
T PRK14574        441 DLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRS  483 (822)
T ss_pred             HHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCcc
Confidence            99886655 7888888889999999999999999766543  5554

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.84  E-value=2.4e-16  Score=126.97  Aligned_cols=293  Identities=14%  Similarity=0.211  Sum_probs=216.0

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcC--Chh-HHHHHHHHHHhcC-------------------CCCCHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSD--RND-LVWRIYQHMLENI-------------------RYPNEA   59 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~-~a~~~~~~~~~~~-------------------~~~~~~   59 (384)
                      |.+.++.-+++.|++.|.+.+...-..+++.-+-.+  ++. .-++.|-.|...|                   .+-+..
T Consensus       129 ~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~e  208 (625)
T KOG4422|consen  129 REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDE  208 (625)
T ss_pred             cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCch
Confidence            677889999999999998888888777766533222  211 1122222222211                   123567


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV  139 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  139 (384)
                      ++..+|.++|+--..+.|.+++++......+.+..++|.+|.+-.-.    ...+++.+|.+..+.||..|+|.++.+..
T Consensus       209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~a  284 (625)
T KOG4422|consen  209 TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAA  284 (625)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHH
Confidence            89999999999999999999999988777788999999998765432    33788999999999999999999999999


Q ss_pred             hcCChHH----HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc----CCCC----ChhhHHHHHH
Q 016681          140 KMRNLES----ALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE-ANCLMQEMENA----GLKP----YDETFNLLIE  206 (384)
Q Consensus       140 ~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~~~l~~  206 (384)
                      +.|+++.    |.+++.+|++.|+.|...+|..+|..+.+-++..+ +..++.++...    ..+|    |...|...+.
T Consensus       285 kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~  364 (625)
T KOG4422|consen  285 KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMS  364 (625)
T ss_pred             HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHH
Confidence            9997764    56778889999999999999999999998888754 55556665442    2222    3456777788


Q ss_pred             HHHhcCchHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016681          207 GCAKAKRIEESLSYCEQMMSRK----LLPS---CSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYA  279 (384)
Q Consensus       207 ~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  279 (384)
                      .|....+.+-|.++..-+....    +.|+   ..-|..+..+.++....+.-...++.|...-.-|+..+...++++..
T Consensus       365 Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~  444 (625)
T KOG4422|consen  365 ICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALD  444 (625)
T ss_pred             HHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHh
Confidence            8888888888887776665431    1222   23456667777788888888888888887777778888888888887


Q ss_pred             hcCCHHHHHHHHHHHHhcC
Q 016681          280 KEGEIQEVLKLYYEMEYKS  298 (384)
Q Consensus       280 ~~~~~~~a~~~~~~~~~~~  298 (384)
                      -.+.++-.-++|..+...|
T Consensus       445 v~~~~e~ipRiw~D~~~~g  463 (625)
T KOG4422|consen  445 VANRLEVIPRIWKDSKEYG  463 (625)
T ss_pred             hcCcchhHHHHHHHHHHhh
Confidence            7888877777777776555

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.81  E-value=4.3e-15  Score=130.25  Aligned_cols=361  Identities=13%  Similarity=0.068  Sum_probs=278.8

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      .|++++|.+++.+..+.. +.+...|-+|...|-+.|+.+++...+-.....+. -|...|..+.....+.|++++|.-.
T Consensus       152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~~c  229 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQARYC  229 (895)
T ss_pred             hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHHHH
Confidence            388999999999999875 56889999999999999999999887755544333 3678999999999999999999999


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCChHHHHHHHHHHHH
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSL----IVYAKVKMRNLESALVVYEEMLK  156 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~  156 (384)
                      |.+..+.. +++...+---+..|-+.|+...|...|.++.+...+.|..-+..    .+..+...++.+.|.+.++....
T Consensus       230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s  308 (895)
T KOG2076|consen  230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS  308 (895)
T ss_pred             HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            99999987 77777777778889999999999999999998765334333333    34556677777999999888876


Q ss_pred             c-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCChhhHHHHHHHH
Q 016681          157 R-GFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG---------------------------LKPYDETFNLLIEGC  208 (384)
Q Consensus       157 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~  208 (384)
                      . +-..+...++.++..+.+...++.+......+....                           +.++... ..++-++
T Consensus       309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL  387 (895)
T KOG2076|consen  309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL  387 (895)
T ss_pred             hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence            3 334467788999999999999999999888876621                           1222222 1233344


Q ss_pred             HhcCchHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 016681          209 AKAKRIEESLSYCEQMMSRK--LLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQE  286 (384)
Q Consensus       209 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  286 (384)
                      ...+..+....+...+.+..  +.-+...|.-+..++...|.+..|..+|..+......-+...|-.+..+|...|..++
T Consensus       388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~  467 (895)
T KOG2076|consen  388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE  467 (895)
T ss_pred             hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence            55556666666666666666  3335677888999999999999999999999987555577899999999999999999


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh--------CCCCCCHhHHHHHHHHHhccCCHHHHH
Q 016681          287 VLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS--------HSLVPGVDIYESLVGIHLEKGNKAKAL  358 (384)
Q Consensus       287 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~a~  358 (384)
                      |.+.|....... +.+...-..|...+.+.|+.++|.+.+..+..        .+..|+..........+.+.|+.++-.
T Consensus       468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi  546 (895)
T KOG2076|consen  468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI  546 (895)
T ss_pred             HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence            999999998764 34455666677888899999999999998643        234556666666777788899988766


Q ss_pred             HHHHHHHh
Q 016681          359 HLCEEMVS  366 (384)
Q Consensus       359 ~~~~~~~~  366 (384)
                      .+...|+.
T Consensus       547 ~t~~~Lv~  554 (895)
T KOG2076|consen  547 NTASTLVD  554 (895)
T ss_pred             HHHHHHHH
Confidence            66555554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.80  E-value=1.2e-14  Score=133.06  Aligned_cols=337  Identities=13%  Similarity=0.075  Sum_probs=245.4

Q ss_pred             hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 016681           23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNE--ATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLI  100 (384)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  100 (384)
                      +.+.-.-+-...+.|+++.|+..|++..+..  |+.  ..+ .++..+...|+.++|+..+++..... +........+.
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA  109 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAA  109 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence            3333333445679999999999999998864  443  334 78888888999999999999988322 33344444446


Q ss_pred             HHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Q 016681          101 LRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE  180 (384)
Q Consensus       101 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (384)
                      ..+...|++++|+++|+++.+.... +...+..++..+...++.++|++.++.+...  .|+...+..++..+...++..
T Consensus       110 ~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~  186 (822)
T PRK14574        110 RAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY  186 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence            6888899999999999999998655 5677778888999999999999999999876  445555655555555567776


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHH------------------------------------------
Q 016681          181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESL------------------------------------------  218 (384)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~------------------------------------------  218 (384)
                      +|++.++++.+.. +.+...+..+..++.+.|-...|.                                          
T Consensus       187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~  265 (822)
T PRK14574        187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD  265 (822)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence            7999999998865 334455555555555544433333                                          


Q ss_pred             ------HHHHHHHhC-CCCCCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 016681          219 ------SYCEQMMSR-KLLPSC-----SAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQE  286 (384)
Q Consensus       219 ------~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  286 (384)
                            .-++.+... +..|..     ....-.+-++...++..++++.++.+...+.+....+-..+.++|...+.+++
T Consensus       266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k  345 (822)
T PRK14574        266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK  345 (822)
T ss_pred             HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence                  333333321 111221     12223456788999999999999999988866556688899999999999999


Q ss_pred             HHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCC-----------CCCH---hHHHHHHHH
Q 016681          287 VLKLYYEMEYKS-----ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSL-----------VPGV---DIYESLVGI  347 (384)
Q Consensus       287 a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~  347 (384)
                      |..+++.+....     .+++......|.-++...+++++|..+++.+.+..+           .|+.   ..+..++..
T Consensus       346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~  425 (822)
T PRK14574        346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS  425 (822)
T ss_pred             HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence            999999986643     123444457899999999999999999999987322           2332   234456777


Q ss_pred             HhccCCHHHHHHHHHHHHhC
Q 016681          348 HLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       348 ~~~~g~~~~a~~~~~~~~~~  367 (384)
                      +...|+..+|.+.++++...
T Consensus       426 ~~~~gdl~~Ae~~le~l~~~  445 (822)
T PRK14574        426 LVALNDLPTAQKKLEDLSST  445 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            89999999999999999764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.80  E-value=1.7e-14  Score=134.74  Aligned_cols=350  Identities=12%  Similarity=0.024  Sum_probs=204.2

Q ss_pred             chHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCC---hHHH
Q 016681            3 LFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLEN--IRYPNEATIRTLISALCKGGQ---LQTY   77 (384)
Q Consensus         3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~~a   77 (384)
                      ...+|...++.|.+.. +-+....-.+--...+.|+.++|.++|+.....  ...++......++..+.+.+.   ..++
T Consensus       357 ~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  435 (987)
T PRK09782        357 NKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV  435 (987)
T ss_pred             chhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence            4445556666665542 235555555555566777777777777776652  122233444466666666554   2222


Q ss_pred             HHH-------------------------HHHHHhCCCCC--cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHH
Q 016681           78 VDM-------------------------LDRIHGKRCSP--MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIA  130 (384)
Q Consensus        78 ~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  130 (384)
                      ..+                         +....... ++  +...|..+..++.. ++.++|...+.+.....  |+...
T Consensus       436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~  511 (987)
T PRK09782        436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQ  511 (987)
T ss_pred             HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHH
Confidence            221                         11111111 33  45566666666655 66666777666665543  34333


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 016681          131 YSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAK  210 (384)
Q Consensus       131 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  210 (384)
                      ...+...+...|++++|...|+++...  +|+...+..+..++.+.|++++|...++...+.. +.+...+..+......
T Consensus       512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~  588 (987)
T PRK09782        512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI  588 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence            333344445677777777777766443  3333445555666677777777777777776643 2222222233333334


Q ss_pred             cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 016681          211 AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKL  290 (384)
Q Consensus       211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  290 (384)
                      .|++++|...+++..+..  |+...+..+..++.+.|++++|...+++.....+. +...++.+...+...|+.++|...
T Consensus       589 ~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~  665 (987)
T PRK09782        589 PGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREM  665 (987)
T ss_pred             CCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            477777777777776654  34566667777777777777777777777766433 556666666677777777777777


Q ss_pred             HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681          291 YYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV  365 (384)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  365 (384)
                      +++..+.. +-+...+..+..++...|++++|...+++..+..+. +..+.........+..+++.|.+-+++..
T Consensus       666 l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~  738 (987)
T PRK09782        666 LERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRW  738 (987)
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            77776653 334556666777777777777777777777665432 23444444555555566666666555544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.79  E-value=4.1e-15  Score=127.68  Aligned_cols=283  Identities=12%  Similarity=0.022  Sum_probs=205.0

Q ss_pred             cCChhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhH--HHHHHHHHhhcchHHH
Q 016681           36 SDRNDLVWRIYQHMLENIRYPNEAT-IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVN--TSLILRIIQEERIEEG  112 (384)
Q Consensus        36 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a  112 (384)
                      .|+++.|.+......+..  +++.. +........+.|+++.|.+.+.++.+.  .|+....  ......+...|+++.|
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence            688888887777665542  22333 333344557888999999999888765  3443322  2336677888999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------HHHHHHHHHHHhcCCHHHHHHH
Q 016681          113 MVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANS-------FVYTTFIGAYCEYGKIEEANCL  185 (384)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~  185 (384)
                      .+.++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++.       ..|..++.......+.+...++
T Consensus       173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~  251 (398)
T PRK10747        173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW  251 (398)
T ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999988887644 6777888888888999999999999888887544222       2334445555555566677777


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 016681          186 MQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFS  265 (384)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  265 (384)
                      ++.+.+. .+.+......+...+...|+.++|.+++++..+..  ++....  ++.+....++.+++.+..+...+..+.
T Consensus       252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~  326 (398)
T PRK10747        252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD  326 (398)
T ss_pred             HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence            7766443 24566777888888889999999999998887743  343221  233444558888888888888877543


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681          266 PNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  331 (384)
                       |...+..+...+.+.+++++|.+.|+...+.  .|+..++..+...+.+.|+.++|.+++++...
T Consensus       327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             6777888888889999999999999988875  58888888888999999999999999887754

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=1.2e-14  Score=117.46  Aligned_cols=345  Identities=10%  Similarity=0.122  Sum_probs=263.4

Q ss_pred             CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 016681           20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSL   99 (384)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   99 (384)
                      +-+..+|..+|..+++-...+.|.++|++..+...+.+..+||.+|.+-.-..    ..+++.+|.+....||..++|++
T Consensus       204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal  279 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL  279 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence            45889999999999999999999999999998888889999999997654332    26788999999999999999999


Q ss_pred             HHHHHhhcchHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHHc----CCCC----ChHHH
Q 016681          100 ILRIIQEERIEE----GMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE-SALVVYEEMLKR----GFSA----NSFVY  166 (384)
Q Consensus       100 ~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~----~~~~----~~~~~  166 (384)
                      +.+..+.|+++.    |.+++.+|++-|+.|...+|..+|..+.+.++.. .+..++.++...    .++|    +...|
T Consensus       280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF  359 (625)
T KOG4422|consen  280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF  359 (625)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence            999999998764    5678889999999999999999999998887764 355555555432    2332    45567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---hhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681          167 TTFIGAYCEYGKIEEANCLMQEMENAG----LKPY---DETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM  239 (384)
Q Consensus       167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  239 (384)
                      ...+..|.+..+.+-|.++-.-+....    +.|+   ..-|..+....++....+.....|+.|.-.-+.|+..+...+
T Consensus       360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~  439 (625)
T KOG4422|consen  360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL  439 (625)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence            778888999999988888776554321    2333   245667777888888999999999999998888999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CH--------HH-----HHHHH-------HHHHhcC
Q 016681          240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG-EI--------QE-----VLKLY-------YEMEYKS  298 (384)
Q Consensus       240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~~-----a~~~~-------~~~~~~~  298 (384)
                      +++....+.++-.-+++..+...|...+...-..++..+++.. ..        ..     |..++       .++.+..
T Consensus       440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~  519 (625)
T KOG4422|consen  440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD  519 (625)
T ss_pred             HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence            9999999999999999999988776555555555555555443 11        11     11111       2333333


Q ss_pred             CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCC-CC---CCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 016681          299 ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHS-LV---PGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLK  370 (384)
Q Consensus       299 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  370 (384)
                        .+....+...-.+.+.|+.++|.++|..+.+.+ --   |.......++....+..+...|..+++-|...+..
T Consensus       520 --~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~  593 (625)
T KOG4422|consen  520 --WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP  593 (625)
T ss_pred             --CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence              345677888888999999999999999985532 22   33333446677778889999999999999776543

>TIGR00540 hemY_coli hemY protein

Probab=99.79  E-value=3.8e-15  Score=128.63  Aligned_cols=294  Identities=14%  Similarity=0.060  Sum_probs=215.6

Q ss_pred             HccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 016681           69 CKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESAL  148 (384)
Q Consensus        69 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  148 (384)
                      ...|+++.|.+.+.+..+.. +.....+-....+..+.|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            45799999999999887764 22344445556778888999999999999877543333334444577888999999999


Q ss_pred             HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH-HHHHHH---HhcCchHHHHHHHHHH
Q 016681          149 VVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFN-LLIEGC---AKAKRIEESLSYCEQM  224 (384)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~  224 (384)
                      ..++.+.+..+. +......+...+...|++++|.+.+..+.+.+.. +...+. .-..++   ...+..++....+..+
T Consensus       174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~  251 (409)
T TIGR00540       174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW  251 (409)
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            999999988543 6778889999999999999999999999998743 333332 111222   2233333344455555


Q ss_pred             HhCCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 016681          225 MSRKLL---PSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEIT-YSHLIGGYAKEGEIQEVLKLYYEMEYKSIS  300 (384)
Q Consensus       225 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  300 (384)
                      .+..+.   .+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.+++..+.. +
T Consensus       252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p  330 (409)
T TIGR00540       252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D  330 (409)
T ss_pred             HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence            554332   3778889999999999999999999999998744322111 1111222234578889999998887763 3


Q ss_pred             CCh--hhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          301 PTL--PAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       301 ~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      -|+  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus       331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344  556788999999999999999999655544568888899999999999999999999998654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=99.78  E-value=5e-15  Score=127.88  Aligned_cols=293  Identities=8%  Similarity=-0.044  Sum_probs=202.9

Q ss_pred             hhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHH
Q 016681           34 TKSDRNDLVWRIYQHMLENIRYPN-EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEG  112 (384)
Q Consensus        34 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  112 (384)
                      ...|+++.|.+.+....+..  |+ ...+-....+..+.|+.+.|.+.+.+..+....+...........+...|+++.|
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            46789999999988876653  44 3344455677778899999999998887653222233444457778889999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH-HHHHHH---HhcCCHHHHHHHHHH
Q 016681          113 MVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYT-TFIGAY---CEYGKIEEANCLMQE  188 (384)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~  188 (384)
                      .+.++.+.+..+. +...+..+...+...|+++.|.+.+..+.+.+.. +...+. .-..++   ...+..++..+.+..
T Consensus       173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            9999999887644 6677888888899999999999999998887654 333331 111211   223333333344444


Q ss_pred             HHHcC---CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 016681          189 MENAG---LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAF-NEMIRRLCECGNAKQANGMLTLALDKGF  264 (384)
Q Consensus       189 ~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~  264 (384)
                      +.+..   .+.+...+..+...+...|+.++|.+++++..+..+......+ ..........++.+.+.+.++...+..+
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p  330 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD  330 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence            44332   1236677888888899999999999999998886544222111 1111222345777888888888777633


Q ss_pred             CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681          265 SPNE--ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       265 ~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  331 (384)
                      . |+  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus       331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2 44  566788888899999999999999644444468888888999999999999999999988654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.78  E-value=1e-14  Score=125.25  Aligned_cols=285  Identities=14%  Similarity=0.071  Sum_probs=218.7

Q ss_pred             cCChHHHHHHHHHHHhCCCCCcHHh-HHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 016681           71 GGQLQTYVDMLDRIHGKRCSPMVIV-NTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALV  149 (384)
Q Consensus        71 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  149 (384)
                      .|+++.|.+.+....+..  +++.. +........+.|+++.|.+.+.++.+....+...........+...|+++.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            699999998888766542  22333 333345558899999999999999875433222222234678889999999999


Q ss_pred             HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCchHHHHHHHH
Q 016681          150 VYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYD-------ETFNLLIEGCAKAKRIEESLSYCE  222 (384)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~  222 (384)
                      .++.+.+.... ++.....+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...++++
T Consensus       175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999887543 7788889999999999999999999999988754322       123333443344445566666666


Q ss_pred             HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 016681          223 QMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT  302 (384)
Q Consensus       223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  302 (384)
                      .+.+.- +.++.....+...+...|+.++|..+++...+.  +|+....  ++.+....++.+++.+..+...+.. +-|
T Consensus       254 ~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~  327 (398)
T PRK10747        254 NQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDT  327 (398)
T ss_pred             hCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence            665432 347888899999999999999999999999885  4455322  2333345699999999999998774 455


Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          303 LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       303 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      ...+..+...+.+.+++++|.+.|+...+.  .|+...+..+...+.+.|+.++|.+++++-..
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            667888999999999999999999999985  58888889999999999999999999998764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.77  E-value=8.4e-18  Score=138.06  Aligned_cols=261  Identities=16%  Similarity=0.115  Sum_probs=87.1

Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 016681           98 SLILRIIQEERIEEGMVLLKRMLRKN-MIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY  176 (384)
Q Consensus        98 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (384)
                      .+...+.+.|++++|++++++..... .+.+...|..+...+...++.+.|.+.++++.+.+.. ++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            33555556666666666665443332 1223333444444555566666666666666655333 44455555555 566


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHH
Q 016681          177 GKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK-LLPSCSAFNEMIRRLCECGNAKQANGM  255 (384)
Q Consensus       177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~  255 (384)
                      +++++|.+++....+..  ++...+...+..+...++++++..+++.+.... ...+...|..+...+.+.|+.++|...
T Consensus        91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            66666666665554432  334455566666666677777777766655432 234555666666667777777777777


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 016681          256 LTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLV  335 (384)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  335 (384)
                      +++..+..+. |......++..+...|+.+++.+++....+.. +.|+..+..+..++...|++++|...|++..+..+.
T Consensus       169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~  246 (280)
T PF13429_consen  169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD  246 (280)
T ss_dssp             HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence            7777665332 46666677777777777777777776665553 445556667777777777777777777777664433


Q ss_pred             CCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681          336 PGVDIYESLVGIHLEKGNKAKALHLCEEMV  365 (384)
Q Consensus       336 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  365 (384)
                       |+.....+..++...|+.++|.++.+++.
T Consensus       247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  247 -DPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             --HHHHHHHHHHHT----------------
T ss_pred             -ccccccccccccccccccccccccccccc
Confidence             66666777777777777777777766654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.76  E-value=1.9e-13  Score=127.93  Aligned_cols=323  Identities=11%  Similarity=0.044  Sum_probs=242.2

Q ss_pred             hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhhcc---h
Q 016681           35 KSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKR--CSPMVIVNTSLILRIIQEER---I  109 (384)
Q Consensus        35 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~---~  109 (384)
                      ..+...++...+..|.+... -+......+.-...+.|+.++|.++|+......  ...+......++..|.+.+.   .
T Consensus       354 ~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  432 (987)
T PRK09782        354 ATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP  432 (987)
T ss_pred             ccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence            34667777777777777522 255666666666788999999999999987631  12344455577777776655   2


Q ss_pred             HHHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 016681          110 EEGMVL----------------------LKRMLRK-NM-IH--DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANS  163 (384)
Q Consensus       110 ~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  163 (384)
                      .++..+                      ++..... +. ++  +...|..+..++.. ++.++|...+.+....  .|+.
T Consensus       433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~  509 (987)
T PRK09782        433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDA  509 (987)
T ss_pred             HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCch
Confidence            233222                      2222211 11 23  56677777777776 8888999988888766  3454


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 016681          164 FVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRL  243 (384)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  243 (384)
                      .....+...+...|++++|...++++...  +|+...+..+...+.+.|+.++|...+++..+..+. +...+..+....
T Consensus       510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l  586 (987)
T PRK09782        510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQR  586 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHH
Confidence            44444555667899999999999997654  455555667778889999999999999999887533 333333444455


Q ss_pred             HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 016681          244 CECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEAD  323 (384)
Q Consensus       244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  323 (384)
                      ...|++++|...+++..+.  .|+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|+
T Consensus       587 ~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi  663 (987)
T PRK09782        587 YIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSR  663 (987)
T ss_pred             HhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            5669999999999999986  4568889999999999999999999999999875 456677888888999999999999


Q ss_pred             HHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681          324 KYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  368 (384)
                      ..+++..+..+. +...+..+..++...|++++|...+++..+..
T Consensus       664 ~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        664 EMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            999999987654 77889999999999999999999999998643

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.76  E-value=5.8e-14  Score=123.34  Aligned_cols=339  Identities=14%  Similarity=0.076  Sum_probs=264.0

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      .....-.....+...|++++|.+++.+.++... .+...|.+|...|-..|+.+++...+-.+...+ +.|...|..+..
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~lad  215 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLAD  215 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence            344445555566677999999999999999754 378899999999999999999999888777766 777899999999


Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHH----HHHHHHHHhcC
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVY----TTFIGAYCEYG  177 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~  177 (384)
                      ...+.|.+++|.-.|.+.++..+. +...+---...|-+.|+...|.+-|.++.+...+.+..-+    -..++.+...+
T Consensus       216 ls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~  294 (895)
T KOG2076|consen  216 LSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN  294 (895)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999998644 5555555667888999999999999999987443333322    33456677788


Q ss_pred             CHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCC------------------------
Q 016681          178 KIEEANCLMQEMENA-GLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPS------------------------  232 (384)
Q Consensus       178 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------  232 (384)
                      +-+.|.+.++..... +-..+...++.++..+.+...++.+......+......+|                        
T Consensus       295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~  374 (895)
T KOG2076|consen  295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL  374 (895)
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence            889999999887762 2234556788999999999999999888877765222222                        


Q ss_pred             ---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH
Q 016681          233 ---CSAFNEMIRRLCECGNAKQANGMLTLALDKG--FSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYT  307 (384)
Q Consensus       233 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  307 (384)
                         ..+ -.++-++.+.+..+....+.....+..  +.-+...|.-+..+|...|++.+|+.+|..+......-+...|-
T Consensus       375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~  453 (895)
T KOG2076|consen  375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY  453 (895)
T ss_pred             Cccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence               122 123334455555555555666666555  33456789999999999999999999999999876556677899


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681          308 SLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV  365 (384)
Q Consensus       308 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  365 (384)
                      .+..+|...|.+++|.+.|+......+. +...-.+|...+.+.|+.++|.+.+..+.
T Consensus       454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  454 KLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            9999999999999999999999986443 55666788888999999999999999975

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.76  E-value=1.1e-17  Score=137.27  Aligned_cols=259  Identities=11%  Similarity=0.097  Sum_probs=66.6

Q ss_pred             HHHHHhhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc
Q 016681           29 LIHVVTKSDRNDLVWRIYQHMLENI-RYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE  107 (384)
Q Consensus        29 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  107 (384)
                      +...+.+.|++++|+++++...... ...|...|..+.......++++.|.+.++++...+ +.++..+..++.. ...+
T Consensus        14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence            3555555566666666654433322 11233333444444444555556666665555544 2344444444444 4555


Q ss_pred             chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 016681          108 RIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG-FSANSFVYTTFIGAYCEYGKIEEANCLM  186 (384)
Q Consensus       108 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~  186 (384)
                      ++++|.+++....+..  ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|++++|++.+
T Consensus        92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5555555555443332  233444445555555555555555555544321 2234445555555555555555555555


Q ss_pred             HHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 016681          187 QEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP  266 (384)
Q Consensus       187 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  266 (384)
                      ++..+.. +.|......++..+...|+.+++.++++...+.. +.++..+..+..++...|+.++|...++...+..+ .
T Consensus       170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~  246 (280)
T PF13429_consen  170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-D  246 (280)
T ss_dssp             HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T
T ss_pred             HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-c
Confidence            5555543 2234445555555555555555555555444432 22334445555555555555555555555554322 2


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681          267 NEITYSHLIGGYAKEGEIQEVLKLYYEM  294 (384)
Q Consensus       267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~  294 (384)
                      |+.....+..++...|+.++|.++..+.
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             -HHHHHHHHHHHT---------------
T ss_pred             cccccccccccccccccccccccccccc
Confidence            4555555555555555555555555443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.76  E-value=2.7e-14  Score=126.35  Aligned_cols=119  Identities=12%  Similarity=0.058  Sum_probs=83.6

Q ss_pred             CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681          247 GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYF  326 (384)
Q Consensus       247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  326 (384)
                      +..++|.++|..+++..+. |...-|-+.-.++..|++.+|..+|.+.++.. .-...+|-.+.++|..+|++..|+++|
T Consensus       626 k~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmY  703 (1018)
T KOG2002|consen  626 KHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMY  703 (1018)
T ss_pred             HHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence            3456677777777766443 66666677777777788888888888777764 234556777778888888888888888


Q ss_pred             HHHhh-CCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          327 KIMKS-HSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       327 ~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      +...+ .....+..+...|.+++.+.|.+.+|.+.+......
T Consensus       704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~  745 (1018)
T KOG2002|consen  704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL  745 (1018)
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            76654 344456677777888888888888877777766654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.75  E-value=9.1e-14  Score=111.43  Aligned_cols=287  Identities=11%  Similarity=0.030  Sum_probs=187.0

Q ss_pred             hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHH
Q 016681           35 KSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMV  114 (384)
Q Consensus        35 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  114 (384)
                      -.|++.+|.++..+-.+.+-. ....|..-..+.-+.|+.+.+-.++.+..+..-.++....-+..+.....|+++.|..
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            357777777777776665443 2334555556666677777777777777665335556666666677777777777777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 016681          115 LLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANS-------FVYTTFIGAYCEYGKIEEANCLMQ  187 (384)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~  187 (384)
                      -++++.+.+.. ++........+|.+.|++.....++..+.+.+.-.+.       .+|..++.-....+..+.-...++
T Consensus       175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            77777766544 5566677777777777777777777777776654332       356666666655555555555666


Q ss_pred             HHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 016681          188 EMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPN  267 (384)
Q Consensus       188 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  267 (384)
                      ....+- ..+...-..++.-+.+.|+.++|.++.++..+++..|.   . ...-.+.+-++...-.+..+.-.+..+ -+
T Consensus       254 ~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~  327 (400)
T COG3071         254 NQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQHP-ED  327 (400)
T ss_pred             hccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhCC-CC
Confidence            554432 33445566666677777777777777777777665544   1 112233455666666666655554422 24


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681          268 EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  331 (384)
                      +..+.+|...|.+++.+.+|...|+...+.  .|+..+|+.+..++.+.|+..+|.+..++...
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            567777777777778888888877766654  47777777777888888888877777776654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.74  E-value=6e-14  Score=109.24  Aligned_cols=300  Identities=15%  Similarity=0.155  Sum_probs=225.4

Q ss_pred             cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHH
Q 016681           71 GGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHD---TIAYSLIVYAKVKMRNLESA  147 (384)
Q Consensus        71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a  147 (384)
                      +.+.++|.+.|-+|.+.+ +.+..+.-+|.+.|.+.|+.|.|+.+...+.++.-.+.   ......|..-|...|-++.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            567899999999998866 66677778888999999999999999998887632211   12334456678889999999


Q ss_pred             HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCchHHHHHHHHH
Q 016681          148 LVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYD----ETFNLLIEGCAKAKRIEESLSYCEQ  223 (384)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~  223 (384)
                      +.+|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+-.+..    ..|.-+...+....+.+.|..++.+
T Consensus       127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            9999998876432 4567788999999999999999999998887644432    3466666667777889999999999


Q ss_pred             HHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 016681          224 MMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL  303 (384)
Q Consensus       224 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  303 (384)
                      ..+.+.+ ++..--.+.+.....|++..|.+.++.+.+.++.--..+...|..+|.+.|+.++....+.++.+..  ++.
T Consensus       206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~  282 (389)
T COG2956         206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA  282 (389)
T ss_pred             HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence            9887655 4555556678888999999999999999998766667788889999999999999999999988764  444


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCccccc
Q 016681          304 PAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLE---KGNKAKALHLCEEMVSEGLKPSTSYLC  377 (384)
Q Consensus       304 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~  377 (384)
                      ..-..+.+.-....-.+.|...+.+-...  +|+...+..++..-..   .|...+-...++.|+...++-.+.+-|
T Consensus       283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC  357 (389)
T COG2956         283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRC  357 (389)
T ss_pred             cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence            45555555444455566666665554443  4888899988887543   455677778888887665554444433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=2.5e-13  Score=110.91  Aligned_cols=292  Identities=12%  Similarity=0.071  Sum_probs=215.7

Q ss_pred             HHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCh
Q 016681           67 ALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI--HDTIAYSLIVYAKVKMRNL  144 (384)
Q Consensus        67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~  144 (384)
                      ++......+++..-.+.....|.+-+...-+....+.-...++++|+.+|+++.+.++-  -|..+|..++-.  +..+-
T Consensus       236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s  313 (559)
T KOG1155|consen  236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS  313 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence            33444566667777777777776666555555556666778888888888888876421  156677666533  32221


Q ss_pred             HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 016681          145 ESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQM  224 (384)
Q Consensus       145 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  224 (384)
                      +  +.++.+-...-.+-.+.|+..+.+-|+-.++.++|...|+...+.+ +.....|+.+..-|....+...|.+-++..
T Consensus       314 k--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  314 K--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA  390 (559)
T ss_pred             H--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence            1  1122111111122355678888888999999999999999999876 344578888999999999999999999999


Q ss_pred             HhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh
Q 016681          225 MSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP  304 (384)
Q Consensus       225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  304 (384)
                      ++-++. |-..|-.+.++|.-.+.+.-|+-.|++..+..+ .|...|.+|..+|.+.++.++|++.|.+....| ..+..
T Consensus       391 vdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~  467 (559)
T KOG1155|consen  391 VDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGS  467 (559)
T ss_pred             HhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchH
Confidence            998765 889999999999999999999999999988643 489999999999999999999999999998876 45668


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHhh----CCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          305 AYTSLISSLCQCGKLEEADKYFKIMKS----HSLVPG--VDIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      .+..|.+.+-+.++.++|...|++.++    .|...+  .....-|...+.+.+++++|.........
T Consensus       468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            899999999999999999999988765    233312  12222355567788888887765555443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.72  E-value=3.6e-13  Score=108.08  Aligned_cols=293  Identities=13%  Similarity=0.088  Sum_probs=237.3

Q ss_pred             ccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 016681           70 KGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALV  149 (384)
Q Consensus        70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  149 (384)
                      -.|++.+|.+...+-.+.+ +.....|..-..+.-..|+.+.+-.++.+..+....++....-...+.....|+++.|..
T Consensus        96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            3699999999999987776 555667777778888999999999999999887555677777888888999999999999


Q ss_pred             HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCchHHHHHHHH
Q 016681          150 VYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYD-------ETFNLLIEGCAKAKRIEESLSYCE  222 (384)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~  222 (384)
                      -.+++.+.+.. ++........+|.+.|++.....++..+.+.+.-.+.       .+|..+++-....+..+.-...++
T Consensus       175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            99999887554 7788889999999999999999999999999865543       456777776666666666666666


Q ss_pred             HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 016681          223 QMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT  302 (384)
Q Consensus       223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  302 (384)
                      ..... .+-++..-..++.-+.++|+.++|.++.++..+++..|+    -...-.+.+-++.+.-.+..++-.+.. +-+
T Consensus       254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~  327 (400)
T COG3071         254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PED  327 (400)
T ss_pred             hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence            66544 334667778889999999999999999999999877665    222233456788887777777665542 345


Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 016681          303 LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPS  372 (384)
Q Consensus       303 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~  372 (384)
                      +..+..|...|.+.+.|.+|...|+...+.  .|+..+|+.+.+++.+.|+..+|.++.++....-.+|+
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence            578899999999999999999999987764  68999999999999999999999999999875544444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=9.8e-15  Score=124.14  Aligned_cols=288  Identities=11%  Similarity=0.054  Sum_probs=224.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHH
Q 016681           73 QLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNM--IHDTIAYSLIVYAKVKMRNLESALVV  150 (384)
Q Consensus        73 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~  150 (384)
                      +..+|...|.++.... .-+..+...+.++|...+++++|.++|+.+.+...  .-+...|...+.-+-+.    -++.+
T Consensus       334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence            5678999999966553 44557778889999999999999999999987531  12667787777554321    12222


Q ss_pred             H-HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q 016681          151 Y-EEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKL  229 (384)
Q Consensus       151 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  229 (384)
                      + +.+.+. -+-.+.+|-++.++|+-+++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+..+...+
T Consensus       409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~  486 (638)
T KOG1126|consen  409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP  486 (638)
T ss_pred             HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence            2 233333 23378899999999999999999999999998855 23668888888888889999999999999877654


Q ss_pred             CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 016681          230 LPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSL  309 (384)
Q Consensus       230 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  309 (384)
                      . +..+|.-+...|.+.++++.|+-.|+.+.+.++. +.+....+...+.+.|+.++|+++++++.... +-|+..--.-
T Consensus       487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~  563 (638)
T KOG1126|consen  487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR  563 (638)
T ss_pred             h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence            4 4556667788899999999999999999987655 77888888889999999999999999998775 3344444445


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 016681          310 ISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKP  371 (384)
Q Consensus       310 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p  371 (384)
                      +..+...+++++|...++++++.-++ +...+..+...|.+.|+.+.|+.-|--+.+..-++
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            66777889999999999999986433 56778888899999999999999988888655443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.71  E-value=2.5e-13  Score=120.34  Aligned_cols=213  Identities=15%  Similarity=0.088  Sum_probs=128.2

Q ss_pred             CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCh------hhHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q 016681          158 GFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENA---GLKPYD------ETFNLLIEGCAKAKRIEESLSYCEQMMSRK  228 (384)
Q Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  228 (384)
                      +-.+.+...|.+...+...|++++|...|......   ...++.      .+--.+...+-..++.+.|.+.|..+.+..
T Consensus       447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh  526 (1018)
T KOG2002|consen  447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH  526 (1018)
T ss_pred             CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence            43456666666777777777777777777665443   111221      111112223333444555555555544432


Q ss_pred             CC---------------------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHHHHHHH
Q 016681          229 LL---------------------------------PSCSAFNEMIRRLCECGNAKQANGMLTLALDKG-FSPNEITYSHL  274 (384)
Q Consensus       229 ~~---------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l  274 (384)
                      +.                                 .++..+..+...+.+...+..|..-|..+.+.- ..+|..+.-.|
T Consensus       527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL  606 (1018)
T KOG2002|consen  527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL  606 (1018)
T ss_pred             chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence            11                                 122233333333334444444444333333221 12355555555


Q ss_pred             HHHHHh------------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHH
Q 016681          275 IGGYAK------------EGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYE  342 (384)
Q Consensus       275 ~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  342 (384)
                      ...|.+            .+..++|+++|.+.++.. +-|..+-|.+.-.++..|++.+|..+|.+.++.... ...+|.
T Consensus       607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~l  684 (1018)
T KOG2002|consen  607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWL  684 (1018)
T ss_pred             hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceee
Confidence            554442            234677889998888775 567778888889999999999999999999986543 567899


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 016681          343 SLVGIHLEKGNKAKALHLCEEMVSEGLKPS  372 (384)
Q Consensus       343 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~  372 (384)
                      .+.++|...|++..|++.|+...+.-.+.+
T Consensus       685 Nlah~~~e~~qy~~AIqmYe~~lkkf~~~~  714 (1018)
T KOG2002|consen  685 NLAHCYVEQGQYRLAIQMYENCLKKFYKKN  714 (1018)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            999999999999999999999887755433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.70  E-value=4.5e-13  Score=104.45  Aligned_cols=291  Identities=12%  Similarity=0.096  Sum_probs=223.4

Q ss_pred             hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC---cHHhHHHHHHHHHhhcchHH
Q 016681           35 KSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSP---MVIVNTSLILRIIQEERIEE  111 (384)
Q Consensus        35 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~  111 (384)
                      -+.+.++|.++|-+|.+... .+..+-.+|.+.+-+.|..+.|+++...+..+.--+   .......|..-|...|-+|.
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hhcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            35678999999999988532 255566788899999999999999999988643111   13345567788899999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHH
Q 016681          112 GMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANS----FVYTTFIGAYCEYGKIEEANCLMQ  187 (384)
Q Consensus       112 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~  187 (384)
                      |+.+|..+.+.+.- -......|+..|-...+|++|.++-+++.+.+..+..    ..|.-+...+....+.+.|..++.
T Consensus       126 AE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         126 AEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            99999999886533 4567788999999999999999999999887655432    234556666667788999999999


Q ss_pred             HHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 016681          188 EMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPN  267 (384)
Q Consensus       188 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  267 (384)
                      +..+.+ +.+...-..+.......|++++|.+.++.+.+.++..-+.+...+..+|.+.|+.++....+..+.+...  .
T Consensus       205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g  281 (389)
T COG2956         205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--G  281 (389)
T ss_pred             HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--C
Confidence            988865 3333444556677888999999999999999998777788899999999999999999999999988643  4


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHhhC
Q 016681          268 EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQ---CGKLEEADKYFKIMKSH  332 (384)
Q Consensus       268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~  332 (384)
                      ...-..+........-.+.|...+.+-...  .|+...+..+|..-..   .|...+....++.|...
T Consensus       282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence            444445555555566677777777666655  5999999999987654   34466667777777653

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=3.7e-14  Score=120.69  Aligned_cols=288  Identities=9%  Similarity=0.030  Sum_probs=186.7

Q ss_pred             ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCcHHhHHHHHHHHHhhcchHHHHHH
Q 016681           38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRC--SPMVIVNTSLILRIIQEERIEEGMVL  115 (384)
Q Consensus        38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~  115 (384)
                      +.++|...|..+... +.-.......+..+|...+++++|..+|+.+.+...  ..+..+|.+.+.-+-+    +-++..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            456777777775443 323345666677777777888888888877776531  2246666666644322    122222


Q ss_pred             H-HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016681          116 L-KRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL  194 (384)
Q Consensus       116 ~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  194 (384)
                      + +.+.... +-.+.+|-.+.++|.-+++.+.|.+.|++..+.... ...+|+.+.+-+.....+|.|...|+...... 
T Consensus       409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-  485 (638)
T KOG1126|consen  409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-  485 (638)
T ss_pred             HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence            2 2333332 225667777778888788888888888777765222 56777777777777777888888887765432 


Q ss_pred             CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 016681          195 KPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHL  274 (384)
Q Consensus       195 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  274 (384)
                      +-+-..|--+...|.+.++++.|.-.|+...+-++. +......+...+.+.|+.++|+++++++...... |+..--..
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~  563 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR  563 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence            112233444556677777888888878777776655 5666666777777778888888888877765444 44444444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 016681          275 IGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP  336 (384)
Q Consensus       275 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  336 (384)
                      +..+...++.++|+..++++++. ++-+..+|-.+...|.+.|+.+.|+.-|--+.+.++++
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            55556677888888888887765 23445566667777888888888887777777655444

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.69  E-value=1.6e-11  Score=104.73  Aligned_cols=354  Identities=13%  Similarity=0.062  Sum_probs=241.8

Q ss_pred             hHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHH----hcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 016681            4 FEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHML----ENIRYPNEATIRTLISALCKGGQLQTYVD   79 (384)
Q Consensus         4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   79 (384)
                      |+.|..+++..++. ++-+...|-+....=-.+|+.+...+++++-+    ..|+..+...|..=...|-..|.+-.+..
T Consensus       422 YenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQA  500 (913)
T KOG0495|consen  422 YENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQA  500 (913)
T ss_pred             HHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHH
Confidence            45566666666554 45566666655555555666666655554432    34555566666666666666666666666


Q ss_pred             HHHHHHhCCCCC--cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681           80 MLDRIHGKRCSP--MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR  157 (384)
Q Consensus        80 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  157 (384)
                      +.......|+..  -..+|..-...|.+.+.++-|..+|...++--. -+...|......--..|..++...+|++....
T Consensus       501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~  579 (913)
T KOG0495|consen  501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ  579 (913)
T ss_pred             HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            666666555332  245666666667777777777777777766532 24555665555555567777777777777766


Q ss_pred             CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHH
Q 016681          158 GFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFN  237 (384)
Q Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  237 (384)
                       ++-....|-...+.+-..|+...|..++....+.. +-+...|-.-+..-..+.+++.|..+|.+....  .|+...|.
T Consensus       580 -~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~m  655 (913)
T KOG0495|consen  580 -CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWM  655 (913)
T ss_pred             -CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhH
Confidence             33355566666677777788888888887777654 335567777777777778888888888777664  35666666


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 016681          238 EMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCG  317 (384)
Q Consensus       238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  317 (384)
                      .-+...--.++.++|.+++++.++. ++.-...|..+.+.+.+.++++.|...|..-.+. ++-.+..|-.|...--+.|
T Consensus       656 Ks~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  656 KSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             HHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhc
Confidence            6666666677888888888777775 2323556777777777888888888877766554 3445566676777777888


Q ss_pred             ChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          318 KLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       318 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      .+-.|..++++.+-.++. +...|...|+.-.+.|..+.|..++.+.++
T Consensus       734 ~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ  781 (913)
T KOG0495|consen  734 QLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ  781 (913)
T ss_pred             chhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999998887776 788899999999999999999888777664

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.68  E-value=9.1e-12  Score=106.24  Aligned_cols=332  Identities=13%  Similarity=0.076  Sum_probs=169.2

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      +...|......=-..|..+....++++....-. -....|.......-..|++..|..++....+.. +.+..+|-.-+.
T Consensus       549 k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavK  626 (913)
T KOG0495|consen  549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVK  626 (913)
T ss_pred             hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence            334444444333344444444444444444311 133333333334444455555555555544443 334444544444


Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE  181 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (384)
                      .-..+.+++.|..+|.+....  .|+...|..-++..--.++.++|.+++++..+. ++.-...|-.+...+-+.++++.
T Consensus       627 le~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~  703 (913)
T KOG0495|consen  627 LEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEM  703 (913)
T ss_pred             HhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHH
Confidence            445555555555555544432  233344433333333444555555555444443 11122333344444444444444


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681          182 ANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALD  261 (384)
Q Consensus       182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  261 (384)
                      |.+.|..-.+. ++-....|..+...--+.|.+-.|..+++...-+++. +...|-..|+.-.+.|..+.|..++.++++
T Consensus       704 aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ  781 (913)
T KOG0495|consen  704 AREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ  781 (913)
T ss_pred             HHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44444332221 1122233444444444444555555555555444443 444555555555555555555555555444


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHH
Q 016681          262 KGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIY  341 (384)
Q Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  341 (384)
                      . ++.+...|..-|....+.++-....+.+++     ...|+.+.-.+...+....+++.|.+.|.+..+.+.. +..+|
T Consensus       782 e-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~w  854 (913)
T KOG0495|consen  782 E-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAW  854 (913)
T ss_pred             h-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHH
Confidence            3 222344444444444444433322222221     2346667777788888888999999999999987655 67888


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          342 ESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       342 ~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      ..+...+.+.|.-++-.+++......
T Consensus       855 a~fykfel~hG~eed~kev~~~c~~~  880 (913)
T KOG0495|consen  855 AWFYKFELRHGTEEDQKEVLKKCETA  880 (913)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            88889999999888888888887654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=9.5e-12  Score=102.20  Aligned_cols=357  Identities=13%  Similarity=0.096  Sum_probs=209.3

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHccCChHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNE-ATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      +++.+|..+|+..+.-. ..+...|...+.+=.+++....|..+++..+..  -|-+ ..|-..+.+=-..|++..|.++
T Consensus        87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence            57788999999998866 448888888899999999999999999998875  2333 2344455555567889999999


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CC
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR-GF  159 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~  159 (384)
                      |++...-  .|+...|++.+..=.+.++++.|..+|++.+-.  .|+..+|......-.+.|+...+..+|+...+. |-
T Consensus       164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~  239 (677)
T KOG1915|consen  164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD  239 (677)
T ss_pred             HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence            9987754  789999999999988999999999999988764  478888887777777788888888777776543 11


Q ss_pred             -CCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------------------------------------HcCC
Q 016681          160 -SANSFVYTTFIGAYCEYGKIEEANCLMQEME--------------------------------------------NAGL  194 (384)
Q Consensus       160 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------------------------------------~~~~  194 (384)
                       ..+...+.+....-.++..++.|.-+|.-..                                            ..+ 
T Consensus       240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-  318 (677)
T KOG1915|consen  240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-  318 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-
Confidence             0112223333333233333333333332222                                            111 


Q ss_pred             CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChh-hHH--------HHHHHHHhcCChHHHHHHHHHHHhc---
Q 016681          195 KPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCS-AFN--------EMIRRLCECGNAKQANGMLTLALDK---  262 (384)
Q Consensus       195 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--------~l~~~~~~~~~~~~a~~~~~~~~~~---  262 (384)
                      +.|-.+|-..+..-...|+.+...++|+..+..-++.+.. .|.        -.+-.-....+.+.+.++++..++.   
T Consensus       319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH  398 (677)
T KOG1915|consen  319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH  398 (677)
T ss_pred             CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc
Confidence            2344455555555556677777777777766543221111 111        1111112334555555555444432   


Q ss_pred             ---------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 016681          263 ---------------------------------GFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSL  309 (384)
Q Consensus       263 ---------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  309 (384)
                                                       |..|-..+|...|..-.+.++++.+..++++..+.+ +-|..+|...
T Consensus       399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ky  477 (677)
T KOG1915|consen  399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKY  477 (677)
T ss_pred             ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence                                             223444444444444444555555555555555443 2334444444


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCC-CCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          310 ISSLCQCGKLEEADKYFKIMKSHS-LVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       310 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      ...-...|+.+.|..+|+-.++.. +......|...|.--...|.++.|..+++++++.
T Consensus       478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence            444445555555555555554421 1112333444444445555555555555555543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=1.9e-11  Score=100.45  Aligned_cols=336  Identities=10%  Similarity=0.049  Sum_probs=232.7

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      +|+...|.++|+...+-  .|+..+|++.+..=.+.+..+.|..+|+..+-  +.|+..+|......=.+.|.+..|..+
T Consensus       154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V  229 (677)
T KOG1915|consen  154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV  229 (677)
T ss_pred             hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence            58889999999988876  69999999999999999999999999999886  458999999988888899999999999


Q ss_pred             HHHHHhCCC--CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC----------------------------------
Q 016681           81 LDRIHGKRC--SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNM----------------------------------  124 (384)
Q Consensus        81 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------------------  124 (384)
                      |+.....--  ..+...+.+....=.++..++.|.-+|+-.+..=+                                  
T Consensus       230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~  309 (677)
T KOG1915|consen  230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF  309 (677)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence            988765310  11233344444444455566666666665544311                                  


Q ss_pred             ---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHH--------HHHHhcCCHHHHHHH
Q 016681          125 ---------IHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANS--FVYTTFI--------GAYCEYGKIEEANCL  185 (384)
Q Consensus       125 ---------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~--------~~~~~~~~~~~a~~~  185 (384)
                               +.|-.+|-..++.-...|+.+...++|+..... ++|-.  ..|...|        -.-....+.+.+.++
T Consensus       310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v  388 (677)
T KOG1915|consen  310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV  388 (677)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence                     113334444455555556666666666666654 33211  1111111        111234566666677


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHH----HhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681          186 MQEMENAGLKPYDETFNLLIEGC----AKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALD  261 (384)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  261 (384)
                      |+...+. ++....||..+--.|    .+..+...|.+++...+.  .-|-..+|...|..-.+.++++.+..+++..++
T Consensus       389 yq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle  465 (677)
T KOG1915|consen  389 YQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE  465 (677)
T ss_pred             HHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            7666652 233334554443333    345567777777776654  456777888888888999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhH
Q 016681          262 KGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKS-ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDI  340 (384)
Q Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  340 (384)
                      .++. +..+|......-...|+.+.|..+|.-..+.. +......|...|.--...|.++.|..+++++.+..  +...+
T Consensus       466 ~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kv  542 (677)
T KOG1915|consen  466 FSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKV  542 (677)
T ss_pred             cChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchH
Confidence            8655 78889998888889999999999999887653 23334567777777778999999999999999863  34456


Q ss_pred             HHHHHHH
Q 016681          341 YESLVGI  347 (384)
Q Consensus       341 ~~~l~~~  347 (384)
                      |.++..-
T Consensus       543 WisFA~f  549 (677)
T KOG1915|consen  543 WISFAKF  549 (677)
T ss_pred             HHhHHHH
Confidence            7766544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.66  E-value=2.4e-13  Score=110.94  Aligned_cols=186  Identities=16%  Similarity=0.195  Sum_probs=116.2

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 016681          175 EYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANG  254 (384)
Q Consensus       175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  254 (384)
                      ..|++++|.+.|.+....+..-....|+.-+ .+-..|+.++|+..|-++...- .-+..+...+...|....++.+|.+
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie  579 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIE  579 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHH
Confidence            4566777777777766554322223333322 3445667777777776654431 1255566666677777777777777


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 016681          255 MLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSL  334 (384)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  334 (384)
                      ++.+.... ++.|+...+.|...|-+.|+-.+|.+.+-+--.. ++-+..+...|...|....-+++++.+|++..-  +
T Consensus       580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i  655 (840)
T KOG2003|consen  580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I  655 (840)
T ss_pred             HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence            77666554 4456777777777777777777777765543332 455666777677777777777777777776543  4


Q ss_pred             CCCHhHHHHHHHH-HhccCCHHHHHHHHHHHHh
Q 016681          335 VPGVDIYESLVGI-HLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       335 ~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~  366 (384)
                      +|+..-|..++.. +.++|++++|.++++...+
T Consensus       656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr  688 (840)
T KOG2003|consen  656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR  688 (840)
T ss_pred             CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            6677777766544 4457777777777776654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=3.4e-12  Score=105.11  Aligned_cols=354  Identities=12%  Similarity=0.047  Sum_probs=243.5

Q ss_pred             cchHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLS-LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN-EATIRTLISALCKGGQLQTYVD   79 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~   79 (384)
                      |++++|++.+.+..+.  .|+ +..|.....+|...|+|++..+--...++.  .|+ +..+..-.+++-..|++++|+.
T Consensus       129 kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal~  204 (606)
T KOG0547|consen  129 KKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEALF  204 (606)
T ss_pred             ccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHHH
Confidence            6889999999999987  567 778888888899999999988887777764  444 4466666778888888888755


Q ss_pred             HHHHHH------hC-------------------------C--CCCcHHhHHHHHHHHHhh--------------------
Q 016681           80 MLDRIH------GK-------------------------R--CSPMVIVNTSLILRIIQE--------------------  106 (384)
Q Consensus        80 ~~~~~~------~~-------------------------~--~~~~~~~~~~l~~~~~~~--------------------  106 (384)
                      =..-.-      ..                         +  +-|+.....+....+...                    
T Consensus       205 D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l  284 (606)
T KOG0547|consen  205 DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEAL  284 (606)
T ss_pred             hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHH
Confidence            333211      00                         0  123333333322222110                    


Q ss_pred             -----c---chHHHHHHHHHHHHc-CCCC-----CH------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHH
Q 016681          107 -----E---RIEEGMVLLKRMLRK-NMIH-----DT------IAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVY  166 (384)
Q Consensus       107 -----~---~~~~a~~~~~~~~~~-~~~~-----~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  166 (384)
                           +   .+..|.+.+.+-... ...+     |.      .+.......+.-.|+.-.|..-|+...+.... +...|
T Consensus       285 ~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~ly  363 (606)
T KOG0547|consen  285 EALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLY  363 (606)
T ss_pred             HHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHH
Confidence                 0   111111111111000 0001     11      11111111233457788888888888877444 33347


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 016681          167 TTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC  246 (384)
Q Consensus       167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  246 (384)
                      --+...|....+.++..+.|++..+.+ +-++.+|..-.+.+.-.+++++|..=|++.++.++. +...|-.+.-+.-+.
T Consensus       364 I~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~  441 (606)
T KOG0547|consen  364 IKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQ  441 (606)
T ss_pred             HHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHH
Confidence            778888999999999999999998876 456677877777788888999999999999887655 566666677777788


Q ss_pred             CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCChh--hHHHHHHHHHhcCCh
Q 016681          247 GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSI-----SPTLP--AYTSLISSLCQCGKL  319 (384)
Q Consensus       247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~--~~~~l~~~~~~~g~~  319 (384)
                      +.+++++..|++..++ ++..+..|+.....+...++++.|.+.|+...+...     ..+..  +-..++..- -.+++
T Consensus       442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~  519 (606)
T KOG0547|consen  442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDI  519 (606)
T ss_pred             HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhH
Confidence            9999999999999887 455788999999999999999999999998876521     11222  222233222 34899


Q ss_pred             HHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681          320 EEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV  365 (384)
Q Consensus       320 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  365 (384)
                      ..|..++++..+.+++ ....+..|...-.+.|+.++|+++|++..
T Consensus       520 ~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  520 NQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             HHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999997766 56678899999999999999999999854

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.8e-11  Score=100.26  Aligned_cols=258  Identities=16%  Similarity=0.087  Sum_probs=206.0

Q ss_pred             HHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CChHHHHHHHHHHHhcC
Q 016681          100 ILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS--ANSFVYTTFIGAYCEYG  177 (384)
Q Consensus       100 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~  177 (384)
                      ..++-.....+++.+-...+...|++-+...-+....+.-...|++.|+.+|+++.+..+-  -|..+|+.++-+-....
T Consensus       234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s  313 (559)
T KOG1155|consen  234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS  313 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence            3455556677888888888888888766655555566667788999999999999887321  15667776664433222


Q ss_pred             CHH-HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681          178 KIE-EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGML  256 (384)
Q Consensus       178 ~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  256 (384)
                      +.. -|..++ .  -....|  .|...+.+-|+-.++.++|...|++..+.++. ....|..+..-|...++...|..-+
T Consensus       314 kLs~LA~~v~-~--idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY  387 (559)
T KOG1155|consen  314 KLSYLAQNVS-N--IDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY  387 (559)
T ss_pred             HHHHHHHHHH-H--hccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence            211 111111 1  112334  78888899999999999999999999998766 6778999999999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 016681          257 TLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP  336 (384)
Q Consensus       257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  336 (384)
                      +++.+-++. |-..|-.|.++|.-.+.+.=|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|++....|-. 
T Consensus       388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-  464 (559)
T KOG1155|consen  388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-  464 (559)
T ss_pred             HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence            999987544 88999999999999999999999999998874 568899999999999999999999999999987644 


Q ss_pred             CHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          337 GVDIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       337 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      +...+..|...|-+.++.++|...+++.++
T Consensus       465 e~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            668899999999999999999999988765

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=3.7e-11  Score=99.17  Aligned_cols=224  Identities=14%  Similarity=0.025  Sum_probs=178.3

Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE  181 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (384)
                      .+.-.|+.-.|..-|+..+.....++. .|..+...|....+.++....|++..+.+.. |+.+|..-...+.-.+++++
T Consensus       335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~  412 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE  412 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence            344578889999999999987665433 3777778899999999999999999887554 77788888888888899999


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681          182 ANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALD  261 (384)
Q Consensus       182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  261 (384)
                      |..=|++..... +-+...|..+.-+..+.+.+++++..|++..++- +..+..|+.....+...++++.|.+.|+...+
T Consensus       413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~  490 (606)
T KOG0547|consen  413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE  490 (606)
T ss_pred             HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence            999999998765 4455677777777788899999999999998874 34788999999999999999999999999886


Q ss_pred             cCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681          262 KGFS-------PNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       262 ~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  331 (384)
                      ....       +.+.+.-.++..- -.+++..|.+++++..+.. +-....|..|.+.-.+.|+.++|+++|++...
T Consensus       491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4222       1111112222221 3489999999999998875 33457899999999999999999999998765

>PRK12370 invasion protein regulator; Provisional

Probab=99.58  E-value=1.1e-11  Score=111.39  Aligned_cols=268  Identities=11%  Similarity=-0.009  Sum_probs=183.6

Q ss_pred             CcHHhHHHHHHHHHh-----hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------hcCChHHHHHHHHHHHH
Q 016681           91 PMVIVNTSLILRIIQ-----EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV---------KMRNLESALVVYEEMLK  156 (384)
Q Consensus        91 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~  156 (384)
                      .+...|...+++...     .+++++|.+.|++..+.... +...|..+..++.         ..+++++|...+++..+
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~  332 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE  332 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence            445555555555322     24567889999998876543 4555655555443         22447889999999888


Q ss_pred             cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhH
Q 016681          157 RGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAF  236 (384)
Q Consensus       157 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  236 (384)
                      .... +...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.++. +...+
T Consensus       333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~  409 (553)
T PRK12370        333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG  409 (553)
T ss_pred             cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence            7443 67778888888889999999999999988865 444567788888899999999999999999887655 33333


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 016681          237 NEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQC  316 (384)
Q Consensus       237 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  316 (384)
                      ..++..+...|++++|...++++.....+-++..+..+..++...|+.++|...+.++.... +.+....+.+...+...
T Consensus       410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  488 (553)
T PRK12370        410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQN  488 (553)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhcc
Confidence            34444566788999999999888765433345567778888889999999999998876542 22333445555666666


Q ss_pred             CChHHHHHHHHHHhhC-CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681          317 GKLEEADKYFKIMKSH-SLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       317 g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  368 (384)
                      |  +.|...++.+.+. .-.+....+  +-..+.-.|+.+.+..+ +++.+.|
T Consensus       489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            6  4777777776652 112222223  33445566777666666 7777654

>PRK12370 invasion protein regulator; Provisional

Probab=99.58  E-value=5.1e-12  Score=113.44  Aligned_cols=268  Identities=12%  Similarity=-0.017  Sum_probs=189.7

Q ss_pred             CCchhhHHHHHHHHh-----hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---------ccCChHHHHHHHHHHH
Q 016681           20 SLSLISFNTLIHVVT-----KSDRNDLVWRIYQHMLENIRYPNEATIRTLISALC---------KGGQLQTYVDMLDRIH   85 (384)
Q Consensus        20 ~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~   85 (384)
                      +.+...|...+++..     ..+.+++|...|++..+..+. +...|..+..++.         ..+++++|...+++..
T Consensus       253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            356666666666532     234689999999999886332 3555655554443         2345889999999999


Q ss_pred             hCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHH
Q 016681           86 GKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFV  165 (384)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  165 (384)
                      +.+ +.+...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...+++..+.... +...
T Consensus       332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~  408 (553)
T PRK12370        332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA  408 (553)
T ss_pred             hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence            887 678888988988999999999999999999987643 6677888889999999999999999999887443 2233


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 016681          166 YTTFIGAYCEYGKIEEANCLMQEMENAGLKP-YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLC  244 (384)
Q Consensus       166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  244 (384)
                      +..++..+...|++++|...+++..... .| +...+..+..++...|+.++|...+.++...... +....+.+...+.
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~  486 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYC  486 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHh
Confidence            3344555677899999999999987654 34 3445677778888999999999999887665322 3445556666677


Q ss_pred             hcCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016681          245 ECGNAKQANGMLTLALDKG-FSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKS  298 (384)
Q Consensus       245 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  298 (384)
                      ..|  +.+...++.+.+.. ..+....+  +-..+.-.|+.+.+..+ +++.+.+
T Consensus       487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            777  47777777665421 12222222  33344556777766666 7777654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=8.4e-11  Score=98.79  Aligned_cols=278  Identities=14%  Similarity=0.080  Sum_probs=204.6

Q ss_pred             CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH
Q 016681           90 SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTF  169 (384)
Q Consensus        90 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  169 (384)
                      ..++........-+...+++.+..++.+.+.+.. ++....+..-|.++.+.|+..+-..+=.++.+. .+..+.+|-++
T Consensus       241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV  318 (611)
T KOG1173|consen  241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV  318 (611)
T ss_pred             hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence            3455555666667778888999999999888764 335556666666888888888888777777776 34467788888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 016681          170 IGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNA  249 (384)
Q Consensus       170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  249 (384)
                      .--|...|+..+|.+.|.+....+- .=...|..+...|+-.+..++|+..+...-+.-+. ....+--+.--|.+.++.
T Consensus       319 g~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~  396 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNL  396 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccH
Confidence            8888888999999999988765431 12357888888888888899998888776654221 111223344557778889


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCChhhHHHHHHHHHhcCChHHHH
Q 016681          250 KQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK------SISPTLPAYTSLISSLCQCGKLEEAD  323 (384)
Q Consensus       250 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~  323 (384)
                      +.|.+.|.+..... +-|+...+-+.-.....+.+.+|..+|+.....      ....-..+++.|..+|.+.+.+++|+
T Consensus       397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            99999998888763 337777777777777788888999888876522      11123456788888899999999999


Q ss_pred             HHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 016681          324 KYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTSY  375 (384)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  375 (384)
                      ..+++......+ +..++.++.-.|...|+++.|.+.|.+.+  .+.|+..+
T Consensus       476 ~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~  524 (611)
T KOG1173|consen  476 DYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIF  524 (611)
T ss_pred             HHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHH
Confidence            999988886555 78888888888999999999999998877  46677643

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.55  E-value=1.9e-11  Score=98.05  Aligned_cols=200  Identities=13%  Similarity=0.042  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016681           58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA  137 (384)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  137 (384)
                      ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence            4455556666666666766666666665544 444556666666666667777777766666655432 44555556666


Q ss_pred             HHhcCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHH
Q 016681          138 KVKMRNLESALVVYEEMLKRGF-SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEE  216 (384)
Q Consensus       138 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  216 (384)
                      +...|++++|.+.++....... ......+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence            6666777777777766665321 1233445556666667777777777776666543 2234456666666667777777


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681          217 SLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALD  261 (384)
Q Consensus       217 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  261 (384)
                      |...+++..+.. +.+...+..+...+...|+.+.|..+.+.+..
T Consensus       188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            777777666552 23445555566666667777777766665544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.54  E-value=2.4e-11  Score=97.44  Aligned_cols=202  Identities=15%  Similarity=0.114  Sum_probs=142.9

Q ss_pred             CcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHH
Q 016681           91 PMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFI  170 (384)
Q Consensus        91 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  170 (384)
                      .....+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+... .+...+..+.
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~  106 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYG  106 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence            34566677777788888888888888887765422 556677777778888888888888887776643 2556667777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 016681          171 GAYCEYGKIEEANCLMQEMENAGLK-PYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNA  249 (384)
Q Consensus       171 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  249 (384)
                      ..+...|++++|.+.+++....... .....+..+...+...|++++|...+.+..+..+. +...+..+...+...|++
T Consensus       107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence            7788888888888888877664221 22345566667777788888888888887766433 455677777778888888


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016681          250 KQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEY  296 (384)
Q Consensus       250 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  296 (384)
                      ++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus       186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            8888888877765 234556666677777777888888877776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.53  E-value=8.7e-12  Score=109.78  Aligned_cols=272  Identities=13%  Similarity=0.141  Sum_probs=146.9

Q ss_pred             HHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 016681            9 DVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKR   88 (384)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   88 (384)
                      +++-.+...|+.|+..+|.++|.-|+..|+.+.|- +|..|.......+...++.++.+....++.+.+.          
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            46677788889999999999999999999998888 8888887777778888888888888888777654          


Q ss_pred             CCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHHHH
Q 016681           89 CSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR-GFSANSFVYT  167 (384)
Q Consensus        89 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~  167 (384)
                       .|...+|..|..+|...|+... ++..++           -...+...+...|.-.....++..+.-. +.-||.   .
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~  143 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---E  143 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---H
Confidence             6778899999999999988765 222222           1111222223333322222222221111 111221   1


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcC-chHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 016681          168 TFIGAYCEYGKIEEANCLMQEMENAG-LKPYDETFNLLIEGCAKAK-RIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE  245 (384)
Q Consensus       168 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  245 (384)
                      ..+......|-++.+++++..+.... ..|    +..+++.+.... .+++...+.+...+   .|++.+|...+.+-..
T Consensus       144 n~illlv~eglwaqllkll~~~Pvsa~~~p----~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~ala  216 (1088)
T KOG4318|consen  144 NAILLLVLEGLWAQLLKLLAKVPVSAWNAP----FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALA  216 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcccccch----HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHh
Confidence            22222333444444444444332211 001    111122222221 12222222222222   3455555555555555


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 016681          246 CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCG  317 (384)
Q Consensus       246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  317 (384)
                      .|+.+.|..++..|.+.|++.+..-|..|+-+   .++..-+..+++.|.+.|+.|+..|+...+..+..+|
T Consensus       217 ag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~  285 (1088)
T KOG4318|consen  217 AGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG  285 (1088)
T ss_pred             cCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence            55555555555555555555555544444433   4555555555555555555555555555554444433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.53  E-value=3.7e-10  Score=98.39  Aligned_cols=291  Identities=14%  Similarity=0.120  Sum_probs=163.0

Q ss_pred             HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhh----
Q 016681           31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQE----  106 (384)
Q Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  106 (384)
                      ..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+...+ |.|..-|..+..+..-.    
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence            4456667777777777654433 32234445556666777777777777777777766 55555565555555222    


Q ss_pred             -cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 016681          107 -ERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNL-ESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANC  184 (384)
Q Consensus       107 -~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  184 (384)
                       .+.+...++|+++...-  |.......+.-.+.....+ ..+..++..+...|++   .+|+.+-..|....+.+-..+
T Consensus        90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~  164 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES  164 (517)
T ss_pred             cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence             23555666666665543  2222222221111111122 2344444555555543   345555555554444444444


Q ss_pred             HHHHHHHc----C----------CCCCh--hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 016681          185 LMQEMENA----G----------LKPYD--ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGN  248 (384)
Q Consensus       185 ~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  248 (384)
                      ++......    +          -+|+.  .++..+...|...|++++|++++++.++..+. .+..|..-.+.+-+.|+
T Consensus       165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~  243 (517)
T PF12569_consen  165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD  243 (517)
T ss_pred             HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence            44444321    1          12333  23344556666777777777777777776533 35666666777777777


Q ss_pred             hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH--------HHHHHHHHhcCChH
Q 016681          249 AKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAY--------TSLISSLCQCGKLE  320 (384)
Q Consensus       249 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~  320 (384)
                      +.+|...++........ |...-+..+..+.+.|++++|.+++......+..|-...+        .....+|.+.|++.
T Consensus       244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~  322 (517)
T PF12569_consen  244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG  322 (517)
T ss_pred             HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            77777777777766544 6666666667777777777777777766555432322111        33445666777777


Q ss_pred             HHHHHHHHHh
Q 016681          321 EADKYFKIMK  330 (384)
Q Consensus       321 ~a~~~~~~~~  330 (384)
                      .|++.|..+.
T Consensus       323 ~ALk~~~~v~  332 (517)
T PF12569_consen  323 LALKRFHAVL  332 (517)
T ss_pred             HHHHHHHHHH
Confidence            7766665443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.52  E-value=4.5e-12  Score=111.53  Aligned_cols=275  Identities=13%  Similarity=0.110  Sum_probs=196.2

Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 016681           44 RIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN  123 (384)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  123 (384)
                      .++-.+...|+.|+..||..+|.-||..|+.+.|- +|.-|.....+.+...++.++.+....++.+.+.          
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            35566777899999999999999999999999888 9998888887888899999999888888877765          


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCChhhHH
Q 016681          124 MIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMEN-AGLKPYDETFN  202 (384)
Q Consensus       124 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~  202 (384)
                       .|...+|..|..+|...||+..    |+...+        ....+...+...|.-.....++..+.- .+..||..+  
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--  144 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--  144 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence             5788899999999999999876    322222        222334445555555554555544322 233444332  


Q ss_pred             HHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 016681          203 LLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG  282 (384)
Q Consensus       203 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  282 (384)
                       .+......|-++.+++++..+...... .+...  +++-+....  .-.+++........-.|++.+|..++.+-...|
T Consensus       145 -~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag  218 (1088)
T KOG4318|consen  145 -AILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG  218 (1088)
T ss_pred             -HHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence             233344456777777777666443211 11111  233332222  233344433333222589999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCC
Q 016681          283 EIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGN  353 (384)
Q Consensus       283 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  353 (384)
                      +.+.|..++.+|.+.|++.+..-|..|+-+   .++..-+..+++-|.+.|+.|+..|+.-.+..+..+|.
T Consensus       219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            999999999999999999999988888876   78888899999999999999999999887777777554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.52  E-value=3.4e-10  Score=98.62  Aligned_cols=294  Identities=15%  Similarity=0.130  Sum_probs=209.6

Q ss_pred             HHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 016681           64 LISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK---  140 (384)
Q Consensus        64 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---  140 (384)
                      ....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++. |..-|..+..+..-   
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence            345668899999999999886544 3555677778889999999999999999999998743 44445555544422   


Q ss_pred             --cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHH
Q 016681          141 --MRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKI-EEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEES  217 (384)
Q Consensus       141 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  217 (384)
                        ..+.+...++++++...-  |.......+.-.+..-..+ ..+..++..+...|+ |  .+|+.+-..|.......-.
T Consensus        88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-P--slF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV-P--SLFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC-c--hHHHHHHHHHcChhHHHHH
Confidence              235677888888887653  3333332222222221223 345666777788886 4  4577777667655555555


Q ss_pred             HHHHHHHHhC----C----------CCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 016681          218 LSYCEQMMSR----K----------LLPSC--SAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE  281 (384)
Q Consensus       218 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  281 (384)
                      ..++......    +          -.|+.  .++..+.+.|-..|++++|...++..+++.+. .+..|..-.+.+-+.
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~  241 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA  241 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence            5555554322    1          12333  24466678889999999999999999988433 478899999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHh------HH--HHHHHHHhccCC
Q 016681          282 GEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVD------IY--ESLVGIHLEKGN  353 (384)
Q Consensus       282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~  353 (384)
                      |++.+|.+.++..++.. .-|...-+-.+..+.++|++++|.+++..+...+..|...      .|  .....+|.+.|+
T Consensus       242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~  320 (517)
T PF12569_consen  242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD  320 (517)
T ss_pred             CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999886 3577777778889999999999999999998866444322      22  345678999999


Q ss_pred             HHHHHHHHHHHHh
Q 016681          354 KAKALHLCEEMVS  366 (384)
Q Consensus       354 ~~~a~~~~~~~~~  366 (384)
                      +..|++-|..+.+
T Consensus       321 ~~~ALk~~~~v~k  333 (517)
T PF12569_consen  321 YGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888777654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.51  E-value=9.7e-12  Score=97.41  Aligned_cols=233  Identities=12%  Similarity=0.059  Sum_probs=197.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH-HHHHH
Q 016681          128 TIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETF-NLLIE  206 (384)
Q Consensus       128 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~  206 (384)
                      -.--+.+.++|.+.|-+.+|.+-++...+.  .|-+.||..|-++|.+..+++.|+.++.+-.+.  .|-.+|| .-+.+
T Consensus       223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR  298 (478)
T KOG1129|consen  223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR  298 (478)
T ss_pred             HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence            333467889999999999999999988876  457778999999999999999999999988775  3444454 45667


Q ss_pred             HHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 016681          207 GCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQE  286 (384)
Q Consensus       207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  286 (384)
                      .+-..++.++|.++++...+.... +......+...|.-.++++-|+..++++...|+. ++..|+.+.-+|.-.++++-
T Consensus       299 i~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~  376 (478)
T KOG1129|consen  299 IHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL  376 (478)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence            788889999999999999887654 7777778888888999999999999999999987 89999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHH
Q 016681          287 VLKLYYEMEYKSISPT--LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEM  364 (384)
Q Consensus       287 a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  364 (384)
                      ++.-|.+....--.|+  ..+|-.+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..+++..
T Consensus       377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAA  455 (478)
T ss_pred             hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence            9999999877643344  345666778888899999999999999887655 6788999999999999999999999998


Q ss_pred             HhC
Q 016681          365 VSE  367 (384)
Q Consensus       365 ~~~  367 (384)
                      ...
T Consensus       456 ~s~  458 (478)
T KOG1129|consen  456 KSV  458 (478)
T ss_pred             hhh
Confidence            754

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.51  E-value=5.5e-12  Score=98.75  Aligned_cols=230  Identities=16%  Similarity=0.083  Sum_probs=136.8

Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 016681           62 RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM  141 (384)
Q Consensus        62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  141 (384)
                      +.+...|.+.|.+.+|...|+.-.+.  .|-+.+|..|.+.|.+..+...|+.++.+-.+.- +-|+....-+.+.+-..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence            45556666666666666666665544  3445566666666666666666666666655441 21333334455556666


Q ss_pred             CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHH
Q 016681          142 RNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYC  221 (384)
Q Consensus       142 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  221 (384)
                      ++.++|.++++...+.. +.++.....+...|.-.++++-|+.+|+++.+.|+ -+...|+.+.-+|.-.++++-++.-|
T Consensus       304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence            66666666666665542 22444444555556666666666666666666663 34455666666666666666666666


Q ss_pred             HHHHhCCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016681          222 EQMMSRKLLP--SCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK  297 (384)
Q Consensus       222 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  297 (384)
                      .+....--.|  -..+|..+-......||+..|.+.|+....++.. +...++.|...-.+.|++++|..+++...+.
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            6655432222  2345666666666667777777777766665433 4566666666666777777777777666544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.50  E-value=5.5e-11  Score=97.43  Aligned_cols=277  Identities=15%  Similarity=0.136  Sum_probs=131.7

Q ss_pred             HHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH-HH-hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 016681           68 LCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR-II-QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE  145 (384)
Q Consensus        68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  145 (384)
                      +.++|+++.|+++++-+.+.+-..-...-+.|-.. |. --.++..|.+.-+..+..+- -+......-.+.....|+++
T Consensus       429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~d  507 (840)
T KOG2003|consen  429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLD  507 (840)
T ss_pred             HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHH
Confidence            45566666666666555443322222222222111 11 12344455555444443211 12222222222333456666


Q ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681          146 SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMM  225 (384)
Q Consensus       146 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  225 (384)
                      +|.+.+.+.....-.-....|| +.-.+-..|+.++|++.|-++... +..+......+.+.|-...++.+|++++.+..
T Consensus       508 ka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~  585 (840)
T KOG2003|consen  508 KAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN  585 (840)
T ss_pred             HHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence            6666666555542111111222 112334556666666665554332 12333445555555555556666666655554


Q ss_pred             hCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh
Q 016681          226 SRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPA  305 (384)
Q Consensus       226 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  305 (384)
                      .. ++.|+...+.+...|-+.|+-.+|.+.+-.-.+. ++-+..+...|...|....-+++++..|++..-  +.|+..-
T Consensus       586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k  661 (840)
T KOG2003|consen  586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK  661 (840)
T ss_pred             cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence            43 2235555666666666666666655554433332 233555555555555555556666666655432  3456666


Q ss_pred             HHHHHHHH-HhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccC
Q 016681          306 YTSLISSL-CQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKG  352 (384)
Q Consensus       306 ~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  352 (384)
                      |..++..| .+.|++.+|.++++..... ++-|.....-|++.+...|
T Consensus       662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence            65555433 3456666666666655543 2335555555555555444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.48  E-value=3.7e-09  Score=90.56  Aligned_cols=353  Identities=14%  Similarity=0.166  Sum_probs=221.4

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      +|+-++|.+..+.-.+..+ .+.+.|+.+.-.+....++++|++.|......+. .|...+.-+.-.-++.++++.....
T Consensus        54 lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~t  131 (700)
T KOG1156|consen   54 LGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLET  131 (700)
T ss_pred             ccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHH
Confidence            4677777777777766543 3777788877777777888888888888877543 3566666666666667777777766


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHH
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN-MIHDTIAYSLIV------YAKVKMRNLESALVVYEE  153 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~  153 (384)
                      -.+..+.. +.....|..+..++.-.|+...|..++++..+.. ..|+...+....      ....+.|..+.|.+.+..
T Consensus       132 r~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~  210 (700)
T KOG1156|consen  132 RNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD  210 (700)
T ss_pred             HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence            66666654 4456677788888888888888888888887764 245555554332      234566777777777655


Q ss_pred             HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHhcCchHHHH-HHHHHHHhC----
Q 016681          154 MLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLI-EGCAKAKRIEESL-SYCEQMMSR----  227 (384)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~----  227 (384)
                      -... +.-....-..-...+.+.++.++|..++..+....  ||...|...+ .++.+..+.-++. .+|....+.    
T Consensus       211 ~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~  287 (700)
T KOG1156|consen  211 NEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH  287 (700)
T ss_pred             hhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence            4433 22122233445667788889999999998888764  6655554444 3333232222222 444444332    


Q ss_pred             ------------------------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh--------cC------
Q 016681          228 ------------------------------KLLPSCSAFNEMIRRLCECGNAKQANGMLTLALD--------KG------  263 (384)
Q Consensus       228 ------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~------  263 (384)
                                                    |++   .++..+...|-   ++..+- +++++..        .|      
T Consensus       288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D  360 (700)
T KOG1156|consen  288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGTGMFNFLD  360 (700)
T ss_pred             ccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHh---chhHhH-HHHHHHHHHHhhcccccCCCccc
Confidence                                          211   11222222221   111111 2222211        00      


Q ss_pred             ----CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 016681          264 ----FSPNEITYS--HLIGGYAKEGEIQEVLKLYYEMEYKSISPT-LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP  336 (384)
Q Consensus       264 ----~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  336 (384)
                          -+|+...|+  .++..+-+.|+++.|...++...++  .|+ +..|..-.+.+...|++++|..++++..+.+. +
T Consensus       361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-a  437 (700)
T KOG1156|consen  361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-A  437 (700)
T ss_pred             ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-h
Confidence                145555444  4566777889999999999888876  343 33455555788889999999999998888653 3


Q ss_pred             CHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 016681          337 GVDIYESLVGIHLEKGNKAKALHLCEEMVSEGL  369 (384)
Q Consensus       337 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  369 (384)
                      |...-..-+....+.++.++|.+++....+.|.
T Consensus       438 DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  438 DRAINSKCAKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             hHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence            555444666667788889999998888887775

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=7.2e-10  Score=93.32  Aligned_cols=285  Identities=11%  Similarity=0.043  Sum_probs=226.3

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016681           57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVY  136 (384)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  136 (384)
                      +......-..-+-..+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++++..+. ...+|-++..
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~  320 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC  320 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence            44555555666777899999999999999887 888888888888999999988888888888887544 7788998988


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHH
Q 016681          137 AKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEE  216 (384)
Q Consensus       137 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  216 (384)
                      .|.-.|...+|.+.|.+....... -...|-...+.|.-.|..++|...+...-+.= +-....+--+.--|.+.++.+.
T Consensus       321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence            888899999999999988765332 34678889999999999999999998776531 1111122223345778899999


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc----CC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 016681          217 SLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK----GF--SPNEITYSHLIGGYAKEGEIQEVLKL  290 (384)
Q Consensus       217 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~  290 (384)
                      |.++|.+.....+. |+...+-+.-.....+.+.+|...|+.....    +.  ..-..+++.|..+|.+.+.+++|+..
T Consensus       399 Ae~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~  477 (611)
T KOG1173|consen  399 AEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY  477 (611)
T ss_pred             HHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence            99999999887544 7888888888888889999999999887731    10  11345688899999999999999999


Q ss_pred             HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHh
Q 016681          291 YYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHL  349 (384)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  349 (384)
                      +++..... +.+..++.++.-.|...|+++.|.+.|.+...  +.|+..+-..++..+.
T Consensus       478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence            99998874 67889999999999999999999999998876  5677766666665444

>PF13041 PPR_2: PPR repeat family

Probab=99.43  E-value=5e-13  Score=77.56  Aligned_cols=49  Identities=45%  Similarity=0.852  Sum_probs=27.8

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 016681          266 PNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLC  314 (384)
Q Consensus       266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  314 (384)
                      ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555555555555555555555555555555555555555555555554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.41  E-value=7.2e-10  Score=95.55  Aligned_cols=239  Identities=22%  Similarity=0.207  Sum_probs=175.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-
Q 016681          127 DTIAYSLIVYAKVKMRNLESALVVYEEMLKR-----GF-SANSF-VYTTFIGAYCEYGKIEEANCLMQEMENA-----G-  193 (384)
Q Consensus       127 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-  193 (384)
                      -..+...+...|...|+++.|..++....+.     |. .|... ..+.+...|...+++++|..+|+++...     | 
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~  277 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE  277 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            3456666889999999999999999887654     21 12222 2344677899999999999999988642     2 


Q ss_pred             CCC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhC-----CCC-CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhc---
Q 016681          194 LKP-YDETFNLLIEGCAKAKRIEESLSYCEQMMSR-----KLL-PS-CSAFNEMIRRLCECGNAKQANGMLTLALDK---  262 (384)
Q Consensus       194 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  262 (384)
                      ..| -..+++.|..+|.+.|++++|...++...+-     +.. |. ...++.+...+...+++++|..+++...+.   
T Consensus       278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~  357 (508)
T KOG1840|consen  278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD  357 (508)
T ss_pred             CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            112 2356777778899999999988888776432     111 11 234667778889999999999999876542   


Q ss_pred             CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681          263 GFSP----NEITYSHLIGGYAKEGEIQEVLKLYYEMEYK----SI---SPTLPAYTSLISSLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       263 ~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  331 (384)
                      -+.+    -..+++.|...|...|++++|.++++++...    +.   .-....++.+...|.+.+++++|.++|.+...
T Consensus       358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~  437 (508)
T KOG1840|consen  358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD  437 (508)
T ss_pred             hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            1222    2467899999999999999999999987643    11   11234678888999999999999999987543


Q ss_pred             ----CCCC-C-CHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681          332 ----HSLV-P-GVDIYESLVGIHLEKGNKAKALHLCEEMV  365 (384)
Q Consensus       332 ----~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  365 (384)
                          .|+. | ...+|..|...|.+.|+++.|.++.+.+.
T Consensus       438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                3332 2 24678899999999999999999988876

>PF13041 PPR_2: PPR repeat family

Probab=99.41  E-value=7.5e-13  Score=76.79  Aligned_cols=50  Identities=26%  Similarity=0.446  Sum_probs=37.8

Q ss_pred             CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 016681           21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCK   70 (384)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   70 (384)
                      ||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+++++++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67777777777777777777777777777777777777777777777654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.39  E-value=5.7e-08  Score=83.49  Aligned_cols=193  Identities=13%  Similarity=0.087  Sum_probs=121.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCCC------hhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcC
Q 016681          177 GKIEEANCLMQEMENAGLKPY------DETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPS---CSAFNEMIRRLCECG  247 (384)
Q Consensus       177 ~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~  247 (384)
                      |+..+-...+.+..+. +.|.      ...|..+...|-.+|+.+.|..+|++..+...+.-   ..+|......-.++.
T Consensus       361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~  439 (835)
T KOG2047|consen  361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE  439 (835)
T ss_pred             CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence            4555666666665543 1121      14577788888889999999999999887654422   345555666666778


Q ss_pred             ChHHHHHHHHHHHhcCC----------CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 016681          248 NAKQANGMLTLALDKGF----------SP-------NEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLI  310 (384)
Q Consensus       248 ~~~~a~~~~~~~~~~~~----------~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  310 (384)
                      +++.|.++++......-          .|       +...|..+++.-...|-++....+|+++.+..+.......| ..
T Consensus       440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yA  518 (835)
T KOG2047|consen  440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YA  518 (835)
T ss_pred             hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HH
Confidence            88888888877653211          11       33456666666667788888888888888776533222222 23


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCC-HhHHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCC
Q 016681          311 SSLCQCGKLEEADKYFKIMKSHSLVPG-VDIYESLVGIHLE---KGNKAKALHLCEEMVSEGLKPS  372 (384)
Q Consensus       311 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~  372 (384)
                      ..+-...-++++.+++++-+..-.-|+ ...|+..+.-+.+   ..+.+.|..+|++.++ |.+|.
T Consensus       519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~  583 (835)
T KOG2047|consen  519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE  583 (835)
T ss_pred             HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence            333455567777777777665433333 3456666655543   2357788888888877 55554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.38  E-value=3.1e-08  Score=85.07  Aligned_cols=355  Identities=14%  Similarity=0.104  Sum_probs=236.2

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML   81 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   81 (384)
                      +++...+++.+.+.+ +.+-...+.....-.+...|+-++|......-.+..+. +.+.|..+.-.+....++++|+..|
T Consensus        21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy   98 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCY   98 (700)
T ss_pred             HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHH
Confidence            456666777777766 33445555555555677788999999888887776553 7788999888888889999999999


Q ss_pred             HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CC
Q 016681           82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG-FS  160 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~  160 (384)
                      +.....+ +.|..+|.-+.-.-++.++++.....-.++.+.... ....|..+..+..-.|+...|..++++..+.. ..
T Consensus        99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~  176 (700)
T KOG1156|consen   99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS  176 (700)
T ss_pred             HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            9999887 788999999988888999999888888888776433 45567777788888999999999999988764 34


Q ss_pred             CChHHHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCchHHHHHHHHHHHhCCCCCCh
Q 016681          161 ANSFVYTTFI------GAYCEYGKIEEANCLMQEMENAGLKPYDET-FNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSC  233 (384)
Q Consensus       161 ~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  233 (384)
                      |+...+....      ....+.|..+.|.+.+......-  .|... --.-...+.+.++.++|..++..+...+  ||.
T Consensus       177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn  252 (700)
T KOG1156|consen  177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDN  252 (700)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chh
Confidence            5666655433      34566788888888877654421  22222 2334456778899999999999999876  454


Q ss_pred             hhHHH-HHHHHHhcCChHHHH-HHHHHHHh----------------------------------cCCCCCHHHHHHHHHH
Q 016681          234 SAFNE-MIRRLCECGNAKQAN-GMLTLALD----------------------------------KGFSPNEITYSHLIGG  277 (384)
Q Consensus       234 ~~~~~-l~~~~~~~~~~~~a~-~~~~~~~~----------------------------------~~~~~~~~~~~~l~~~  277 (384)
                      ..|.. +..++.+-.+.-++. .+|....+                                  .|+++   ++..+...
T Consensus       253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SL  329 (700)
T KOG1156|consen  253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSL  329 (700)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHH
Confidence            44443 344443222222222 44444333                                  22221   22222222


Q ss_pred             HHhcCCHHHHHHHHHHHHh----cC----------CCCChhhH--HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHH
Q 016681          278 YAKEGEIQEVLKLYYEMEY----KS----------ISPTLPAY--TSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIY  341 (384)
Q Consensus       278 ~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  341 (384)
                      |-.-...+-..++...+..    .|          -+|+...|  -.+++.+-+.|+++.|..+++..+++-+. -...|
T Consensus       330 yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly  408 (700)
T KOG1156|consen  330 YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELY  408 (700)
T ss_pred             HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHH
Confidence            2211111111111111111    11          13444433  44667788999999999999999886422 23455


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681          342 ESLVGIHLEKGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       342 ~~l~~~~~~~g~~~~a~~~~~~~~~~~  368 (384)
                      ..=.+.+...|..++|..++++..+.+
T Consensus       409 ~~KaRI~kH~G~l~eAa~~l~ea~elD  435 (700)
T KOG1156|consen  409 LVKARIFKHAGLLDEAAAWLDEAQELD  435 (700)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence            566688999999999999999998754

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=6.9e-09  Score=84.32  Aligned_cols=300  Identities=11%  Similarity=0.022  Sum_probs=210.5

Q ss_pred             HHHHHHHHHHHc--cCChHHHHHHHHHHHhC-CCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016681           59 ATIRTLISALCK--GGQLQTYVDMLDRIHGK-RCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIV  135 (384)
Q Consensus        59 ~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  135 (384)
                      .+....+.+++.  .++...+...+-.+... -++.|+.....+...+...|+.++|...|++....++. +........
T Consensus       195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya  273 (564)
T KOG1174|consen  195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYA  273 (564)
T ss_pred             cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHH
Confidence            333334444333  34444444444333322 24678889999999999999999999999988765322 222233333


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchH
Q 016681          136 YAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIE  215 (384)
Q Consensus       136 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  215 (384)
                      -.+.+.|+++....+...+.... +.+...|-.-.......++++.|+.+-++..+.+ +.+...+..-...+...++++
T Consensus       274 ~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~  351 (564)
T KOG1174|consen  274 VLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHT  351 (564)
T ss_pred             HHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchH
Confidence            34567888888888877776542 1244445445555667788999999988887755 334455655566778889999


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHH-HHH-HhcCCHHHHHHHHHH
Q 016681          216 ESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLI-GGY-AKEGEIQEVLKLYYE  293 (384)
Q Consensus       216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~  293 (384)
                      +|.-.|+..+...+. +...|.-++.+|...|.+.+|...-+...+. ++.+..+.+.+. ..+ .....-++|.+++++
T Consensus       352 ~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek  429 (564)
T KOG1174|consen  352 QAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEK  429 (564)
T ss_pred             HHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence            999999988776433 6789999999999999999998887776654 233555655552 222 233445788888888


Q ss_pred             HHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          294 MEYKSISPT-LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       294 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      ....  .|+ ....+.+...+...|..+.++.++++...  ..||....+.|...+...+.+++|.+.|...+..
T Consensus       430 ~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  430 SLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             hhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            7765  344 34567777888999999999999998876  3578888999999999999999999988887653

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.37  E-value=1e-07  Score=83.73  Aligned_cols=361  Identities=12%  Similarity=0.049  Sum_probs=213.2

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHH-ccCChHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEA-TIRTLISALC-KGGQLQTYVD   79 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~-~~~~~~~a~~   79 (384)
                      |+++.+.+.|++....-+ .....|+.+...+...|.-..|..+++........|+.. .+...-..|. +.+.++++++
T Consensus       337 g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegld  415 (799)
T KOG4162|consen  337 GQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLD  415 (799)
T ss_pred             HHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHH
Confidence            445555555555443321 244455555555555555555555555443332223222 2222222222 2244555554


Q ss_pred             HHHHHHhC--C--CCCcHHhHHHHHHHHHh-----------hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 016681           80 MLDRIHGK--R--CSPMVIVNTSLILRIIQ-----------EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNL  144 (384)
Q Consensus        80 ~~~~~~~~--~--~~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  144 (384)
                      +-.++...  +  -......|..+.-+|..           .....++++.+++..+.+.. |+...-.+.--|+..+++
T Consensus       416 YA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l  494 (799)
T KOG4162|consen  416 YAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQL  494 (799)
T ss_pred             HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhH
Confidence            44444331  0  01112233333333321           11234566677777665543 333333344467778899


Q ss_pred             HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC------------------CCChhhHHHHH
Q 016681          145 ESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENA-GL------------------KPYDETFNLLI  205 (384)
Q Consensus       145 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~------------------~~~~~~~~~l~  205 (384)
                      +.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+..... |.                  .....|...++
T Consensus       495 ~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L  574 (799)
T KOG4162|consen  495 TSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKL  574 (799)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHH
Confidence            999999999888766668888888888888899999999888766543 11                  00012222222


Q ss_pred             HHHHh---------cC--------------chHHHHHHHHHH--------HhCC---------CC--CC------hhhHH
Q 016681          206 EGCAK---------AK--------------RIEESLSYCEQM--------MSRK---------LL--PS------CSAFN  237 (384)
Q Consensus       206 ~~~~~---------~~--------------~~~~a~~~~~~~--------~~~~---------~~--~~------~~~~~  237 (384)
                      ..+-.         .|              +..++.+....+        ...+         ..  |+      ...|.
T Consensus       575 ~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwl  654 (799)
T KOG4162|consen  575 ALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWL  654 (799)
T ss_pred             HHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHH
Confidence            22210         00              011111111110        0000         00  11      11234


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 016681          238 EMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCG  317 (384)
Q Consensus       238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  317 (384)
                      .....+.+.+..++|...+.+..... +.....|......+...|..++|.+.|......+ +-+.....++..++.+.|
T Consensus       655 laa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G  732 (799)
T KOG4162|consen  655 LAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELG  732 (799)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhC
Confidence            55566777788888887777776653 3356667777777888999999999999888764 345667888999999999


Q ss_pred             ChHHHHH--HHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          318 KLEEADK--YFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       318 ~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      +...|..  ++..+.+.++. +...|..+...+.+.|+.+.|.+.|+...+.
T Consensus       733 ~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  733 SPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             CcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            8888888  99999998866 8899999999999999999999999998764

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.35  E-value=4.5e-09  Score=86.72  Aligned_cols=96  Identities=11%  Similarity=-0.092  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV  139 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  139 (384)
                      .|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.+.|++..+.... +..++..+..++.
T Consensus        66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~  143 (296)
T PRK11189         66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            34444445555555555555555555544 344555555555555555555555555555544322 3344444445555


Q ss_pred             hcCChHHHHHHHHHHHHc
Q 016681          140 KMRNLESALVVYEEMLKR  157 (384)
Q Consensus       140 ~~~~~~~a~~~~~~~~~~  157 (384)
                      ..|++++|.+.|+...+.
T Consensus       144 ~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             HCCCHHHHHHHHHHHHHh
Confidence            555555555555555543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.34  E-value=4.9e-08  Score=83.64  Aligned_cols=60  Identities=22%  Similarity=0.259  Sum_probs=34.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCC------C--CHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          308 SLISSLCQCGKLEEADKYFKIMKSHSLV------P--GVDIYESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       308 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      ....++...|+.+.|..+++.+......      .  ..........++...|++++|.+.+.+.+..
T Consensus       269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3455666777777777777776552111      0  1111222233456778888888888776654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.34  E-value=2.8e-09  Score=92.02  Aligned_cols=236  Identities=16%  Similarity=0.104  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhC-----C-CCCcHH-hHHHHHHHHHhhcchHHHHHHHHHHHHc-----CCC-C
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGK-----R-CSPMVI-VNTSLILRIIQEERIEEGMVLLKRMLRK-----NMI-H  126 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~  126 (384)
                      +...+...|...|+++.|..+++...+.     | ..|.+. ..+.+...|...+++++|..+|+++..-     |.. |
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            4444666666666666666666665433     1 022222 2233556666777777777777766541     211 1


Q ss_pred             -CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCC-CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC
Q 016681          127 -DTIAYSLIVYAKVKMRNLESALVVYEEMLKR-----GFS-ANS-FVYTTFIGAYCEYGKIEEANCLMQEMENA---GLK  195 (384)
Q Consensus       127 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~  195 (384)
                       -..+++.|..+|.+.|++++|...++...+.     |.. |.. ..++.+...+...+++++|..+++...+.   -..
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g  360 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG  360 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence             2344556666677777777766666655431     111 111 23445556667777777777777655331   011


Q ss_pred             C----ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC----C---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHh---
Q 016681          196 P----YDETFNLLIEGCAKAKRIEESLSYCEQMMSRK----L---LPSCSAFNEMIRRLCECGNAKQANGMLTLALD---  261 (384)
Q Consensus       196 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---  261 (384)
                      +    -..+++.+...|.+.|++++|.+++++.+...    .   .-....++.+...|.+.+.+.+|.++|.+...   
T Consensus       361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~  440 (508)
T KOG1840|consen  361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK  440 (508)
T ss_pred             ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            1    12567777777777787777777777765431    1   11234566677777777777777777765432   


Q ss_pred             -cCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681          262 -KGF--SPNEITYSHLIGGYAKEGEIQEVLKLYYEME  295 (384)
Q Consensus       262 -~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  295 (384)
                       .|+  +-...+|..|...|.+.|+++.|.++.+...
T Consensus       441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             222  1234577788888888888888888777664

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.34  E-value=5.8e-08  Score=83.18  Aligned_cols=305  Identities=10%  Similarity=0.017  Sum_probs=188.6

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCC-CCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIR-YPNEA-TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSL   99 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   99 (384)
                      ....|..+...+...++.+.+.+.+....+... .++.. ........+...|++++|.+.+++..... |.+...+.. 
T Consensus         5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-   82 (355)
T cd05804           5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-   82 (355)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence            345566666777777888887777777665422 22322 22223445567899999999999988775 555555442 


Q ss_pred             HHHHHh----hcchHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 016681          100 ILRIIQ----EERIEEGMVLLKRMLRKNMIHD-TIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYC  174 (384)
Q Consensus       100 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  174 (384)
                      ...+..    .+..+.+.+.+..  .....|+ ......+...+...|++++|...+++..+.... +...+..+..++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~  159 (355)
T cd05804          83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLE  159 (355)
T ss_pred             hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence            222322    3445555555544  1122233 344455667888999999999999999987433 5677888899999


Q ss_pred             hcCCHHHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCC-CChhhH-H--HHHHHHHhcC
Q 016681          175 EYGKIEEANCLMQEMENAGL-KPYD--ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLL-PSCSAF-N--EMIRRLCECG  247 (384)
Q Consensus       175 ~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~-~--~l~~~~~~~~  247 (384)
                      ..|++++|...+++...... .|+.  ..|..+...+...|++++|..++++....... +..... +  .++..+...|
T Consensus       160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g  239 (355)
T cd05804         160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG  239 (355)
T ss_pred             HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence            99999999999998876532 1222  23556778889999999999999998654331 111111 1  2233333444


Q ss_pred             ChHHHHHH--H-HHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--C----hhhHHHHH--HHHHh
Q 016681          248 NAKQANGM--L-TLALDKGF-SPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP--T----LPAYTSLI--SSLCQ  315 (384)
Q Consensus       248 ~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~l~--~~~~~  315 (384)
                      ....+.+.  + ........ ............++...|+.+.|..+++.+......+  .    ..+-..++  .++..
T Consensus       240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~  319 (355)
T cd05804         240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA  319 (355)
T ss_pred             CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence            43333332  2 22111100 1112222356677788999999999999886643220  1    11122223  34568


Q ss_pred             cCChHHHHHHHHHHhh
Q 016681          316 CGKLEEADKYFKIMKS  331 (384)
Q Consensus       316 ~g~~~~a~~~~~~~~~  331 (384)
                      .|++++|.+.+.....
T Consensus       320 ~g~~~~A~~~L~~al~  335 (355)
T cd05804         320 EGNYATALELLGPVRD  335 (355)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            9999999999988765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.34  E-value=2.3e-08  Score=79.77  Aligned_cols=157  Identities=9%  Similarity=-0.052  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016681          215 EESLSYCEQMMSRKLLPSC-SAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYE  293 (384)
Q Consensus       215 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  293 (384)
                      .-|.+.|...-+++..-|+ ..-.++...+.-..+++++...++.+...-.. |...--.+.++++..|.+.+|.++|-+
T Consensus       340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~  418 (557)
T KOG3785|consen  340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIR  418 (557)
T ss_pred             HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhh
Confidence            3444444444333332221 12233444455555666666666666654333 223333466777778888888888877


Q ss_pred             HHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhH-HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 016681          294 MEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDI-YESLVGIHLEKGNKAKALHLCEEMVSEGLKPS  372 (384)
Q Consensus       294 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~  372 (384)
                      +....++.+..-...|.++|.+++.++.|+.++-++...   .+..+ ...+..-|.+.+.+=-|.+.|+.+...  .|+
T Consensus       419 is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~  493 (557)
T KOG3785|consen  419 ISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPT  493 (557)
T ss_pred             hcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCC
Confidence            765554433333345557888888888887766544321   12222 333445577777777777777777643  455


Q ss_pred             ccccc
Q 016681          373 TSYLC  377 (384)
Q Consensus       373 ~~~~~  377 (384)
                      +..|.
T Consensus       494 pEnWe  498 (557)
T KOG3785|consen  494 PENWE  498 (557)
T ss_pred             ccccC
Confidence            55443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.33  E-value=4.3e-09  Score=78.87  Aligned_cols=193  Identities=12%  Similarity=-0.008  Sum_probs=90.6

Q ss_pred             HHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc
Q 016681           28 TLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE  107 (384)
Q Consensus        28 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  107 (384)
                      .+.-.|...|+...|..-+++.++..+. +..+|..+...|.+.|..+.|.+.|++..+.. +.+-.+.|.....+|..|
T Consensus        40 qLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          40 QLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence            3334445555555555555555554221 34445555555555555555555555555443 344445555555555555


Q ss_pred             chHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 016681          108 RIEEGMVLLKRMLRKNMI-HDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLM  186 (384)
Q Consensus       108 ~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  186 (384)
                      ++++|...|++......- ....+|..+.-+..+.|+.+.|...|++..+.... ...+...+.....+.|++-.|...+
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~  196 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL  196 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence            555555555554443111 12234444444444555555555555555444222 3334444444455555555555555


Q ss_pred             HHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 016681          187 QEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQM  224 (384)
Q Consensus       187 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  224 (384)
                      +.....+. ++..+.-..|..-...|+.+.+-+.=.++
T Consensus       197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL  233 (250)
T COG3063         197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL  233 (250)
T ss_pred             HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            54444432 44444444444444445444444433333

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.33  E-value=9.1e-09  Score=77.16  Aligned_cols=195  Identities=11%  Similarity=-0.018  Sum_probs=100.9

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 016681           61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK  140 (384)
Q Consensus        61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  140 (384)
                      ...|.-.|.+.|+...|..-+++..+.+ +.+..+|..+...|-+.|+.+.|.+-|++..+.... +..+.|.....+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence            3344445555566666666666555554 444555555555555555555565555555554332 44455555555555


Q ss_pred             cCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHH
Q 016681          141 MRNLESALVVYEEMLKRGF-SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLS  219 (384)
Q Consensus       141 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  219 (384)
                      .|.+++|...|++...... .-...+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.....+.|++-.|..
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence            5555555555555554321 1123355555555555555555555555555543 1222344445555555555555555


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016681          220 YCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLA  259 (384)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  259 (384)
                      .++.....+. ++....-..|+.--..|+.+.+-+.=..+
T Consensus       195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL  233 (250)
T COG3063         195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL  233 (250)
T ss_pred             HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            5555555443 45445444555555555554444443333

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.32  E-value=5.8e-09  Score=86.11  Aligned_cols=218  Identities=11%  Similarity=0.040  Sum_probs=153.2

Q ss_pred             chHHHHHHHHHHHhcC-CCC--chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 016681            3 LFEVAFDVCRYLEQRG-FSL--SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVD   79 (384)
Q Consensus         3 ~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   79 (384)
                      ..+.++.-+.++.... ..|  ....|..+...+...|+.++|...|++..+..+ .+...|+.+...+...|++++|..
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4567888888887642 122  245688888889999999999999999998644 368899999999999999999999


Q ss_pred             HHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 016681           80 MLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGF  159 (384)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  159 (384)
                      .|++..+.. +.+..+|..+...+...|++++|.+.+++..+.... +. ........+...++.++|...|.+..... 
T Consensus       120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-  195 (296)
T PRK11189        120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-  195 (296)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence            999999876 556788888999999999999999999999886533 22 22222233445678999999997755432 


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C-----CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q 016681          160 SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG-L-----KPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKL  229 (384)
Q Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  229 (384)
                      .++...+ .  ......|+...+ +.+..+.+.- .     +.....|..+...+.+.|++++|...|++..+.++
T Consensus       196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            2232222 2  223335555443 3444443211 0     11224677777778888888888888888877654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=4.9e-08  Score=79.54  Aligned_cols=291  Identities=13%  Similarity=0.038  Sum_probs=207.3

Q ss_pred             cCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHH
Q 016681           36 SDRNDLVWRIYQHMLEN-IRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMV  114 (384)
Q Consensus        36 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  114 (384)
                      .++...+..++-.+... -.+.|+.....+...+...|+.++|...|++....+ +-+..........+.+.|+++....
T Consensus       209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~  287 (564)
T KOG1174|consen  209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSA  287 (564)
T ss_pred             hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHH
Confidence            44555555555444433 244577888999999999999999999999988765 3344444444455677889998888


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016681          115 LLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL  194 (384)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  194 (384)
                      +...+....- .....|-.-+..+...++++.|+.+-++..+.... +...+-.-...+...++.++|.-.|+..+... 
T Consensus       288 L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-  364 (564)
T KOG1174|consen  288 LMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-  364 (564)
T ss_pred             HHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence            8888776431 13334444445556678899999988888776332 44455444567888899999999999887653 


Q ss_pred             CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHH-HHH-HhcCChHHHHHHHHHHHhcCCCCC-HHHH
Q 016681          195 KPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI-RRL-CECGNAKQANGMLTLALDKGFSPN-EITY  271 (384)
Q Consensus       195 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~~  271 (384)
                      +-+...|.-++.+|...|++.+|...-+.....- ..+..+...+. ..+ .....-++|.++++...+.  .|+ ....
T Consensus       365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV  441 (564)
T KOG1174|consen  365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV  441 (564)
T ss_pred             hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence            3456889999999999999999887776655431 22444444432 222 2223457788888877765  333 4456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 016681          272 SHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLV  335 (384)
Q Consensus       272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  335 (384)
                      +.+...+...|..+.+..++++....  .||....+.|.+.+...+.+++|++.|......+++
T Consensus       442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~  503 (564)
T KOG1174|consen  442 NLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK  503 (564)
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence            77778888899999999999988765  588889999999999999999999999988876554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.20  E-value=4e-07  Score=88.10  Aligned_cols=336  Identities=10%  Similarity=0.020  Sum_probs=203.7

Q ss_pred             HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC------CCc--HHhHHHHHHHHH
Q 016681           33 VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRC------SPM--VIVNTSLILRII  104 (384)
Q Consensus        33 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~  104 (384)
                      +...|++..+..+++.+.......+..........+...|+++++..+++.....--      .+.  ......+...+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            444566666666655542211111222233344555677899999888887654210      111  122223334556


Q ss_pred             hhcchHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChHHHHHHHHHHHh
Q 016681          105 QEERIEEGMVLLKRMLRKNMIHDT----IAYSLIVYAKVKMRNLESALVVYEEMLKR----GFS-ANSFVYTTFIGAYCE  175 (384)
Q Consensus       105 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~  175 (384)
                      ..|++++|...+++....-...+.    ...+.+...+...|+++.|...+++....    |.. .....+..+...+..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            789999999999987763211121    23455556677889999999998887643    111 112344556677888


Q ss_pred             cCCHHHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhC----CCCCChhhHHHHHHHHH
Q 016681          176 YGKIEEANCLMQEMENA----GLK--P-YDETFNLLIEGCAKAKRIEESLSYCEQMMSR----KLLPSCSAFNEMIRRLC  244 (384)
Q Consensus       176 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~  244 (384)
                      .|++++|...+++....    +..  + ....+..+...+...|++++|...+.+....    +.......+..+...+.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            99999999988776542    211  1 1223444555667779999999888876543    11112334445666778


Q ss_pred             hcCChHHHHHHHHHHHhcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHh
Q 016681          245 ECGNAKQANGMLTLALDKGFSP-NEITY-----SHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL---PAYTSLISSLCQ  315 (384)
Q Consensus       245 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~  315 (384)
                      ..|+++.|...+.......... ....+     ...+..+...|+.+.|...+............   ..+..+..++..
T Consensus       624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~  703 (903)
T PRK04841        624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL  703 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence            8999999999888775421110 11111     11223445578899998888775542211111   113456677888


Q ss_pred             cCChHHHHHHHHHHhhC----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681          316 CGKLEEADKYFKIMKSH----SLVPG-VDIYESLVGIHLEKGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       316 ~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  368 (384)
                      .|++++|...+++....    |..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus       704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            99999999999887652    32221 2456667778889999999999999987643

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.19  E-value=1.4e-06  Score=75.34  Aligned_cols=339  Identities=12%  Similarity=0.146  Sum_probs=218.4

Q ss_pred             hhhHHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           23 LISFNTLIHVVTKSDRNDLVWRIYQHMLEN-IRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      +..|-..+..+.++++.......|+..+.. -+......|...+......+-++.+..++++..+..    +..-+-.+.
T Consensus       102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie  177 (835)
T KOG2047|consen  102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIE  177 (835)
T ss_pred             CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHH
Confidence            455666677778888888888888888765 222345578888888888888999999999988653    444677788


Q ss_pred             HHHhhcchHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCChHHHHHHHHH
Q 016681          102 RIIQEERIEEGMVLLKRMLRKN------MIHDTIAYSLIVYAKVKMRNLE---SALVVYEEMLKRGFSANSFVYTTFIGA  172 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~  172 (384)
                      .++..+++++|-+.+...+...      .+.+-..|..+-+..++..+.-   ....+++.+...-..--...|.+|.+-
T Consensus       178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY  257 (835)
T KOG2047|consen  178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY  257 (835)
T ss_pred             HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence            8889999999999888876532      2335556666666655544332   233444444433121224578999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------------------chHHHHHHHHHHHhCCCC
Q 016681          173 YCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAK----------------------RIEESLSYCEQMMSRKLL  230 (384)
Q Consensus       173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~~~  230 (384)
                      |.+.|.+++|..+|++....-  .+..-|+.+..+|+.-.                      +++-.+..|+.+....+.
T Consensus       258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~  335 (835)
T KOG2047|consen  258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL  335 (835)
T ss_pred             HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence            999999999999998877643  22333444444444321                      122233344444333211


Q ss_pred             -----------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016681          231 -----------PSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP------NEITYSHLIGGYAKEGEIQEVLKLYYE  293 (384)
Q Consensus       231 -----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~  293 (384)
                                 -+...|..-+.  ...|+..+-...+.++.+. +.|      -...|..+...|-..|+.+.|..+|++
T Consensus       336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek  412 (835)
T KOG2047|consen  336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK  412 (835)
T ss_pred             HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence                       12222322222  2346677777777777653 222      235688889999999999999999998


Q ss_pred             HHhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHhhC----------CCCC-------CHhHHHHHHHHHhccCC
Q 016681          294 MEYKSISPT---LPAYTSLISSLCQCGKLEEADKYFKIMKSH----------SLVP-------GVDIYESLVGIHLEKGN  353 (384)
Q Consensus       294 ~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~-------~~~~~~~l~~~~~~~g~  353 (384)
                      ..+-..+--   ..+|..-...-.+..+++.|.++.++....          |..|       +...|..++...-..|-
T Consensus       413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt  492 (835)
T KOG2047|consen  413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT  492 (835)
T ss_pred             hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            876543211   234444445555677888898888876532          1111       34457777777777888


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 016681          354 KAKALHLCEEMVSEGLK  370 (384)
Q Consensus       354 ~~~a~~~~~~~~~~~~~  370 (384)
                      ++....+++++.+..+-
T Consensus       493 festk~vYdriidLria  509 (835)
T KOG2047|consen  493 FESTKAVYDRIIDLRIA  509 (835)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999887653

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=1.9e-06  Score=73.74  Aligned_cols=185  Identities=9%  Similarity=0.029  Sum_probs=115.2

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML   81 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   81 (384)
                      +++++|++....+...+ +-+..++..=+-++.+.+.+++|+.+.+.-...  ..+..-+..-.-+.-+.++.++|+..+
T Consensus        26 ~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~  102 (652)
T KOG2376|consen   26 GEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTL  102 (652)
T ss_pred             hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHH
Confidence            67899999999999876 557778888888899999999998665443211  111111111122234567888888877


Q ss_pred             HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC---------------------------CCHHHHHHH
Q 016681           82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI---------------------------HDTIAYSLI  134 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~~~~~l  134 (384)
                      +...    +.+..+...-...+-+.+++++|+++|..+.+++..                           ....+|..+
T Consensus       103 ~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~  178 (652)
T KOG2376|consen  103 KGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELL  178 (652)
T ss_pred             hccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHH
Confidence            7222    223445555666777888888888888888554221                           011133332


Q ss_pred             H---HHHHhcCChHHHHHHHHHHHHc-------CCCCC------h-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681          135 V---YAKVKMRNLESALVVYEEMLKR-------GFSAN------S-FVYTTFIGAYCEYGKIEEANCLMQEMENAG  193 (384)
Q Consensus       135 l---~~~~~~~~~~~a~~~~~~~~~~-------~~~~~------~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  193 (384)
                      .   ..++..|++..|+++++.....       +-.-+      . ..-..+.-++...|+.++|.+++....+..
T Consensus       179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~  254 (652)
T KOG2376|consen  179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN  254 (652)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence            2   3455678899999888887321       11100      0 112334556777888889988888887765

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.17  E-value=1.8e-06  Score=73.13  Aligned_cols=151  Identities=9%  Similarity=0.110  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016681          214 IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP-NEITYSHLIGGYAKEGEIQEVLKLYY  292 (384)
Q Consensus       214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~  292 (384)
                      .+.....++++......--+-+|...++...+...++.|..+|.++.+.+..+ ++...++++..++ .++.+-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence            33444455554443222234467777888888888999999999999877766 7778888888776 478889999998


Q ss_pred             HHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          293 EMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPG--VDIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       293 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      --.+.- ..++.--...+.-+.+.++-..+..+|++....++.|+  ..+|..++.--..-|+...+.++-+++..
T Consensus       426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            765541 22333445677778888999999999999988755544  47899999988899999999888887754

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.16  E-value=2.5e-09  Score=86.93  Aligned_cols=250  Identities=17%  Similarity=0.091  Sum_probs=128.7

Q ss_pred             HHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 016681           67 ALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLES  146 (384)
Q Consensus        67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  146 (384)
                      -+.-.|++..++.-.+ ......+.+......+.+++...|+++.++   .++.... .|.......+...+....+-+.
T Consensus        10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~   84 (290)
T PF04733_consen   10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES   84 (290)
T ss_dssp             HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred             HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence            3445677777765555 222221223444555667777777665433   3333322 4555555444433333233344


Q ss_pred             HHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681          147 ALVVYEEMLKRGFSA-NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMM  225 (384)
Q Consensus       147 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  225 (384)
                      +..-+++.......+ +..........+...|++++|++++...      .+.......+..+.+.++++.|.+.++.|.
T Consensus        85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            443333322222221 2222222334455567777777666532      234555666677777777777777777776


Q ss_pred             hCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 016681          226 SRKLLPSCSAFNEMIRRLCE----CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP  301 (384)
Q Consensus       226 ~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  301 (384)
                      +.+   +..+...+..++..    .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+ +-
T Consensus       159 ~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~  233 (290)
T PF04733_consen  159 QID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN  233 (290)
T ss_dssp             CCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred             hcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence            543   22333334443332    23567777777776554 44566667777777777777777777777766543 33


Q ss_pred             ChhhHHHHHHHHHhcCCh-HHHHHHHHHHhhC
Q 016681          302 TLPAYTSLISSLCQCGKL-EEADKYFKIMKSH  332 (384)
Q Consensus       302 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~  332 (384)
                      ++.+...++.+....|+. +.+.+++.++...
T Consensus       234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            445555566666666665 5566666666653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=9e-08  Score=74.72  Aligned_cols=92  Identities=9%  Similarity=0.062  Sum_probs=41.8

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHH-HHHHHH
Q 016681           26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTS-LILRII  104 (384)
Q Consensus        26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~  104 (384)
                      +.+.+..+.+..+++.|++++....++..+ +....+.+...|-...++..|-+.++++-..  .|...-|.. -...+-
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY   89 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY   89 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence            344444444555555555555554444221 4444455555555555555555555555443  222222211 123333


Q ss_pred             hhcchHHHHHHHHHHH
Q 016681          105 QEERIEEGMVLLKRML  120 (384)
Q Consensus       105 ~~~~~~~a~~~~~~~~  120 (384)
                      +.+.+..|+.+...|.
T Consensus        90 ~A~i~ADALrV~~~~~  105 (459)
T KOG4340|consen   90 KACIYADALRVAFLLL  105 (459)
T ss_pred             HhcccHHHHHHHHHhc
Confidence            4445555555554443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=9.4e-07  Score=74.68  Aligned_cols=98  Identities=10%  Similarity=-0.022  Sum_probs=82.3

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN-EATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      |+++.|+..|....... ++|-..|..-..++.+.|++++|++=-.+..+  ..|+ ...|+....++.-.|++++|+.-
T Consensus        16 ~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~a   92 (539)
T KOG0548|consen   16 GDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILA   92 (539)
T ss_pred             ccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence            78999999999998876 44888899999999999999999876666655  4455 66899999999999999999999


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHH
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRI  103 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~  103 (384)
                      |.+-.+.. +.|...++.+..++
T Consensus        93 y~~GL~~d-~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   93 YSEGLEKD-PSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHhhcC-CchHHHHHhHHHhh
Confidence            99988876 66777777777766

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.14  E-value=8.6e-07  Score=71.12  Aligned_cols=87  Identities=13%  Similarity=0.094  Sum_probs=58.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHH-HHHHHHHhccCCH
Q 016681          276 GGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIY-ESLVGIHLEKGNK  354 (384)
Q Consensus       276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~  354 (384)
                      .++.-..++++.+..++.+...-...|...+| +.++.+..|++.+|.++|-++....++ |..+| ..|.++|.+.+++
T Consensus       367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP  444 (557)
T KOG3785|consen  367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKP  444 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCc
Confidence            33333445556666665555543333334444 778888899999999999888776666 44455 5567888999999


Q ss_pred             HHHHHHHHHH
Q 016681          355 AKALHLCEEM  364 (384)
Q Consensus       355 ~~a~~~~~~~  364 (384)
                      +-|..++-++
T Consensus       445 ~lAW~~~lk~  454 (557)
T KOG3785|consen  445 QLAWDMMLKT  454 (557)
T ss_pred             hHHHHHHHhc
Confidence            9888776544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=1.9e-06  Score=73.79  Aligned_cols=343  Identities=14%  Similarity=0.108  Sum_probs=202.5

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681           26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ  105 (384)
Q Consensus        26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  105 (384)
                      .-+=++.+...+++++|.+...++...+ +-+...+..-+-++.+.+++++|+.+.+.-.... .-+... -.-..+..+
T Consensus        15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~-fEKAYc~Yr   91 (652)
T KOG2376|consen   15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF-FEKAYCEYR   91 (652)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh-HHHHHHHHH
Confidence            3344677788999999999999998875 3356667777778899999999996665432211 111111 122334557


Q ss_pred             hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------------------------
Q 016681          106 EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA------------------------  161 (384)
Q Consensus       106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------  161 (384)
                      .+..++|+..++-+.+.    +..+...-...+.+.+++++|.++|+.+.+++.+-                        
T Consensus        92 lnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v  167 (652)
T KOG2376|consen   92 LNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV  167 (652)
T ss_pred             cccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence            89999999988833221    33355666677889999999999999986543210                        


Q ss_pred             ---ChHHHHHHH---HHHHhcCCHHHHHHHHHHHHHcC-------CCCCh-------hhHHHHHHHHHhcCchHHHHHHH
Q 016681          162 ---NSFVYTTFI---GAYCEYGKIEEANCLMQEMENAG-------LKPYD-------ETFNLLIEGCAKAKRIEESLSYC  221 (384)
Q Consensus       162 ---~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~  221 (384)
                         ...+|..+.   -.+...|++.+|+++++...+.+       -.-+.       ..-..+.-.+-..|+..+|..++
T Consensus       168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy  247 (652)
T KOG2376|consen  168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY  247 (652)
T ss_pred             cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence               122344333   34567899999999998883211       00101       11223444566789999999999


Q ss_pred             HHHHhCCCCCChhh----HHH-----------------------------------------------HHHHHHhc----
Q 016681          222 EQMMSRKLLPSCSA----FNE-----------------------------------------------MIRRLCEC----  246 (384)
Q Consensus       222 ~~~~~~~~~~~~~~----~~~-----------------------------------------------l~~~~~~~----  246 (384)
                      ...++.+.. |...    -|.                                               ++..+...    
T Consensus       248 ~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~  326 (652)
T KOG2376|consen  248 VDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV  326 (652)
T ss_pred             HHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            988876543 2111    000                                               11111000    


Q ss_pred             ----------------------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------
Q 016681          247 ----------------------------GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYY------  292 (384)
Q Consensus       247 ----------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------  292 (384)
                                                  .....+..++...-+....-...+.-..+......|+++.|.+++.      
T Consensus       327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~  406 (652)
T KOG2376|consen  327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW  406 (652)
T ss_pred             HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence                                        0112222222222222222123344555666677899999999888      


Q ss_pred             --HHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHH
Q 016681          293 --EMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH--SLVPG----VDIYESLVGIHLEKGNKAKALHLCEEM  364 (384)
Q Consensus       293 --~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~  364 (384)
                        .+.+.+..|  .+...+...+.+.++.+.|..++......  .-.+.    ..++..++..-.+.|+-++|..+++++
T Consensus       407 ~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel  484 (652)
T KOG2376|consen  407 KSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL  484 (652)
T ss_pred             hhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence              444444333  45566667777777777777777666541  11111    123333444445679999999999998


Q ss_pred             HhCCCCCCccccccc
Q 016681          365 VSEGLKPSTSYLCSA  379 (384)
Q Consensus       365 ~~~~~~p~~~~~~~l  379 (384)
                      .+.. ++|..+++.+
T Consensus       485 ~k~n-~~d~~~l~~l  498 (652)
T KOG2376|consen  485 VKFN-PNDTDLLVQL  498 (652)
T ss_pred             HHhC-CchHHHHHHH
Confidence            8743 3454444433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.13  E-value=1.6e-06  Score=69.29  Aligned_cols=300  Identities=10%  Similarity=0.059  Sum_probs=151.0

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHH---HHHHHHccCChHHHHHHHHHHHhCCCCCcHH-hHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRT---LISALCKGGQLQTYVDMLDRIHGKRCSPMVI-VNT   97 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~   97 (384)
                      ++.-..-+-..+...|++..|+.-|...++-    |+..|.+   -...|...|+...|+.=+++..+.  +||-. .-.
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi  110 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI  110 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence            3444445566666777777777777666553    3333333   334566667777777777776654  45432 222


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHHcCCCCC--HHHHH------------HHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 016681           98 SLILRIIQEERIEEGMVLLKRMLRKNMIHD--TIAYS------------LIVYAKVKMRNLESALVVYEEMLKRGFSANS  163 (384)
Q Consensus        98 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  163 (384)
                      .-...+.+.|.+++|..=|+..++......  ...+.            ..+..+...|+...|......+.+. .+.+.
T Consensus       111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda  189 (504)
T KOG0624|consen  111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDA  189 (504)
T ss_pred             HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-Ccchh
Confidence            233456677777777777777776543211  11111            1222334456666666666666554 23355


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhh----HHH-
Q 016681          164 FVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSA----FNE-  238 (384)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~-  238 (384)
                      ..+..-..+|...|++..|+.-++...+.. ..+..++--+-..+...|+.+.++...++..+.+  ||...    |-. 
T Consensus       190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKkl  266 (504)
T KOG0624|consen  190 SLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKL  266 (504)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHH
Confidence            556666666666666666665555544433 2333444445555556666666666666665543  22111    111 


Q ss_pred             --H------HHHHHhcCChHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH
Q 016681          239 --M------IRRLCECGNAKQANGMLTLALDKGFSPNEI---TYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYT  307 (384)
Q Consensus       239 --l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  307 (384)
                        +      +......+++.++....+...+..+.....   .+..+-.++...+++.+|++...+..+.. +.|..++.
T Consensus       267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~  345 (504)
T KOG0624|consen  267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLC  345 (504)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHH
Confidence              1      111223344444444444444433221111   22233334444555555555555555432 22244554


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhC
Q 016681          308 SLISSLCQCGKLEEADKYFKIMKSH  332 (384)
Q Consensus       308 ~l~~~~~~~g~~~~a~~~~~~~~~~  332 (384)
                      --..+|.-...++.|+.-|+...+.
T Consensus       346 dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  346 DRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            4555555555555555555555553

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.13  E-value=4.4e-08  Score=83.16  Aligned_cols=85  Identities=9%  Similarity=0.048  Sum_probs=41.6

Q ss_pred             hhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHH
Q 016681           34 TKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGM  113 (384)
Q Consensus        34 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  113 (384)
                      .+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+++..+.+ +.|......|.-.|...|.-.+|+
T Consensus       296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al  373 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL  373 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence            3444555555555554444322 34455555555555555555555555555444 444445555555555555555555


Q ss_pred             HHHHHHH
Q 016681          114 VLLKRML  120 (384)
Q Consensus       114 ~~~~~~~  120 (384)
                      +.++..+
T Consensus       374 ~~L~~Wi  380 (579)
T KOG1125|consen  374 KMLDKWI  380 (579)
T ss_pred             HHHHHHH
Confidence            5554443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.12  E-value=9.8e-09  Score=83.55  Aligned_cols=252  Identities=13%  Similarity=0.075  Sum_probs=156.0

Q ss_pred             HHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcch
Q 016681           30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERI  109 (384)
Q Consensus        30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  109 (384)
                      ++.+.-.|++..++.-.+ ........+......+.+++...|+.+.+   +.++.... +|.......+...+...++-
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~   82 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDK   82 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccch
Confidence            355667788888886665 22222212344455667778888876643   34444444 66666665555555443445


Q ss_pred             HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016681          110 EEGMVLLKRMLRKNMIH-DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQE  188 (384)
Q Consensus       110 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  188 (384)
                      +.++.-+++.......+ +..........+...|++++|+++++..      .+.......+.+|.+.++++.|.+.++.
T Consensus        83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~  156 (290)
T PF04733_consen   83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN  156 (290)
T ss_dssp             HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55555554444333222 2222233334556678888888877542      2566777778888889999999999988


Q ss_pred             HHHcCCCCChhhHHHHHHHHHh----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 016681          189 MENAGLKPYDETFNLLIEGCAK----AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGF  264 (384)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  264 (384)
                      |.+.+  .| .+...+..++..    .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|..++.+....+.
T Consensus       157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~  232 (290)
T PF04733_consen  157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP  232 (290)
T ss_dssp             HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred             HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence            87643  33 444445554443    23688899999987665 456778888888888889999999998888877654


Q ss_pred             CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 016681          265 SPNEITYSHLIGGYAKEGEI-QEVLKLYYEMEYK  297 (384)
Q Consensus       265 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~  297 (384)
                      . ++.+...++.+....|+. +.+.+.+.++...
T Consensus       233 ~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  233 N-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             C-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             C-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            3 667777777777777777 6677788877765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.11  E-value=3.8e-06  Score=74.15  Aligned_cols=354  Identities=15%  Similarity=0.095  Sum_probs=230.8

Q ss_pred             HHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 016681           11 CRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCS   90 (384)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   90 (384)
                      +.++....+..++..|..+--++...|+++.+.+.|++....-+ -....|..+...+...|.-..|..+++.-......
T Consensus       311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~  389 (799)
T KOG4162|consen  311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ  389 (799)
T ss_pred             HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence            34444445667899999999999999999999999999876533 35678888888899999999999999886654322


Q ss_pred             Cc-HHhHHHHHHHHH-hhcchHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHh-----------cCChHHHHHHHHH
Q 016681           91 PM-VIVNTSLILRII-QEERIEEGMVLLKRMLRK--NM--IHDTIAYSLIVYAKVK-----------MRNLESALVVYEE  153 (384)
Q Consensus        91 ~~-~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~-----------~~~~~~a~~~~~~  153 (384)
                      |+ ...+-..-..|. +.+..++++.+-.+.+..  +.  ......|..+.-+|..           .....++.+.+++
T Consensus       390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~  469 (799)
T KOG4162|consen  390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE  469 (799)
T ss_pred             CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence            33 333333333333 456677777777666652  11  1123344444444432           1234567788888


Q ss_pred             HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCC---
Q 016681          154 MLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLL---  230 (384)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---  230 (384)
                      ..+.+.. |+...-.+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+.-..   
T Consensus       470 av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~  548 (799)
T KOG4162|consen  470 AVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV  548 (799)
T ss_pred             HHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence            8776433 333333344456778899999999999988755677788988888888899999999998876543111   


Q ss_pred             ----------------CChhhHHHHHHHHHhc-----------------------CChHHHHHHHHHHH--------hcC
Q 016681          231 ----------------PSCSAFNEMIRRLCEC-----------------------GNAKQANGMLTLAL--------DKG  263 (384)
Q Consensus       231 ----------------~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~--------~~~  263 (384)
                                      -...|...++..+-..                       ++..++......+.        ..+
T Consensus       549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~  628 (799)
T KOG4162|consen  549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG  628 (799)
T ss_pred             hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence                            0011222222221100                       11111111111110        001


Q ss_pred             ---------C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681          264 ---------F--SPN------EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYF  326 (384)
Q Consensus       264 ---------~--~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  326 (384)
                               .  .|+      ...|......+.+.+..++|...+.+..+.. +.....|......+...|..++|.+.|
T Consensus       629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af  707 (799)
T KOG4162|consen  629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF  707 (799)
T ss_pred             cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence                     0  111      1235556677778888888988888877653 445666776777788899999999999


Q ss_pred             HHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHH--HHHHHHhCC
Q 016681          327 KIMKSHSLVPGVDIYESLVGIHLEKGNKAKALH--LCEEMVSEG  368 (384)
Q Consensus       327 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~  368 (384)
                      ......++. ++.+..++...+.+.|+..-|..  ++.++.+.+
T Consensus       708 ~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d  750 (799)
T KOG4162|consen  708 LVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD  750 (799)
T ss_pred             HHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence            998886554 56778899999999998888877  888888754

>PLN02789 farnesyltranstransferase

Probab=99.10  E-value=5.7e-07  Score=74.33  Aligned_cols=214  Identities=11%  Similarity=0.076  Sum_probs=135.2

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681           26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGG-QLQTYVDMLDRIHGKRCSPMVIVNTSLILRII  104 (384)
Q Consensus        26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  104 (384)
                      +..+-..+...++.++|+.+++.+++.... +..+|+....++...| ++++++..++++.+.+ +.+..+|+.....+.
T Consensus        40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~  117 (320)
T PLN02789         40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE  117 (320)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence            444445555667888888888888875332 3445665555566666 5788888888888776 566667776655555


Q ss_pred             hhcch--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---CCH
Q 016681          105 QEERI--EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY---GKI  179 (384)
Q Consensus       105 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~  179 (384)
                      +.|+.  ++++.+++++.+.+.. +..+|+....++.+.|+++++++.++++.+.++. |...|+....++.+.   |..
T Consensus       118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence            55553  5677788788776654 7777887777777888888888888888877554 566666665555443   222


Q ss_pred             ----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 016681          180 ----EEANCLMQEMENAGLKPYDETFNLLIEGCAKA----KRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE  245 (384)
Q Consensus       180 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  245 (384)
                          ++.++...++.... +-|...|+-+...+...    +...+|...+.+....++. +......++..|+.
T Consensus       196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~  267 (320)
T PLN02789        196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE  267 (320)
T ss_pred             cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence                34555555555543 34455666666555552    2334566666665554333 45555666666654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.07  E-value=4e-07  Score=85.05  Aligned_cols=230  Identities=11%  Similarity=0.024  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhCC-C---CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHH
Q 016681           58 EATIRTLISALCKGGQLQTYVDMLDRIHGKR-C---SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSL  133 (384)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  133 (384)
                      ...|...+....+.++.+.|.++.++....- +   .--..+|.++++.-...|.-+...++|+++.+..-  .-..|..
T Consensus      1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYTVHLK 1535 (1710)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHH
Confidence            4456666777777777777777777765431 1   11245666666666666766777777777776531  2345667


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHh
Q 016681          134 IVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPY---DETFNLLIEGCAK  210 (384)
Q Consensus       134 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~  210 (384)
                      |...|.+.+..++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+.-  |.   .......+..-.+
T Consensus      1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l--Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL--PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--chhhhHHHHHHHHHHHhh
Confidence            777777777777788887777665 22356677777777777777777777777766542  32   2334444555567


Q ss_pred             cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHH
Q 016681          211 AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNE--ITYSHLIGGYAKEGEIQEVL  288 (384)
Q Consensus       211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~  288 (384)
                      .|+.+.+..+|+......++ -...|+..++.-.++|+.+.+..+|+++...++.|-.  ..|...+..=-+.|+-..+.
T Consensus      1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence            77888888888777776544 5567888888878888888888888888777665532  35556666555556655444


Q ss_pred             HHHHH
Q 016681          289 KLYYE  293 (384)
Q Consensus       289 ~~~~~  293 (384)
                      .+=.+
T Consensus      1692 ~VKar 1696 (1710)
T KOG1070|consen 1692 YVKAR 1696 (1710)
T ss_pred             HHHHH
Confidence            44333

>PLN02789 farnesyltranstransferase

Probab=99.07  E-value=1e-06  Score=72.85  Aligned_cols=212  Identities=9%  Similarity=0.021  Sum_probs=135.3

Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc-chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 016681           62 RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE-RIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK  140 (384)
Q Consensus        62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  140 (384)
                      ..+-..+...++.++|+.+.+++.+.+ +-+..+|+....++...| ++++++..++++.+...+ +..+|+.....+.+
T Consensus        41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~  118 (320)
T PLN02789         41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEK  118 (320)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHH
Confidence            334444555678888888888888776 566677777766777766 578888888888877655 55567655555555


Q ss_pred             cCCh--HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---Cc--
Q 016681          141 MRNL--ESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKA---KR--  213 (384)
Q Consensus       141 ~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~--  213 (384)
                      .++.  +++..+++++.+...+ |..+|+....++...|+++++++.++++.+.+ +-|...|+.....+.+.   |.  
T Consensus       119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~  196 (320)
T PLN02789        119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLE  196 (320)
T ss_pred             cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccc
Confidence            6653  5677778777776444 77788888888888888888888888888776 34445565554444433   22  


Q ss_pred             --hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016681          214 --IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC----GNAKQANGMLTLALDKGFSPNEITYSHLIGGYA  279 (384)
Q Consensus       214 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  279 (384)
                        .++.+....+.+...+. +...|+.+...+...    +...+|...+....+.++. +......|+..|+
T Consensus       197 ~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~  266 (320)
T PLN02789        197 AMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC  266 (320)
T ss_pred             ccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence              23455555566655443 566666666665552    2234455555555443322 4455555555554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=1.4e-07  Score=73.75  Aligned_cols=194  Identities=10%  Similarity=0.021  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHH-HHHHH
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSL-IVYAK  138 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~  138 (384)
                      -+++.+..+.+..++..|++++..-.+.. +.+....+.+..+|-...++..|-..++++-..-  |...-|.. -...+
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL   88 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence            34566666778889999999999887775 5578888999999999999999999999997753  33333332 23455


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCChHHHHHH--HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHH
Q 016681          139 VKMRNLESALVVYEEMLKRGFSANSFVYTTF--IGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEE  216 (384)
Q Consensus       139 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  216 (384)
                      .+.+.+..|+++...|...   ++...-..-  .......+++..+..+.++....+   +..+.+.......+.|+++.
T Consensus        89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa  162 (459)
T KOG4340|consen   89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA  162 (459)
T ss_pred             HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence            6677777888777666542   111111101  111223344444444444433211   11222222223344555555


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 016681          217 SLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKG  263 (384)
Q Consensus       217 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  263 (384)
                      |.+-|....+-+.-.....|+..+ +..+.+++..|.+...++.++|
T Consensus       163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG  208 (459)
T KOG4340|consen  163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERG  208 (459)
T ss_pred             HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhh
Confidence            555555544432222333444332 2334455555555555555443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=1.7e-07  Score=79.64  Aligned_cols=252  Identities=12%  Similarity=0.062  Sum_probs=185.0

Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE  181 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (384)
                      -+.+.|++.+|.-.|+..++.++. +...|..|.......++-..|+..+.+..+.... |....-.|.-.|...|.-..
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence            456788899999999998888655 7888998988888889989999999998887443 67778888888999999999


Q ss_pred             HHHHHHHHHHcCCC-----C---ChhhHHHHHHHHHhcCchHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCChHHH
Q 016681          182 ANCLMQEMENAGLK-----P---YDETFNLLIEGCAKAKRIEESLSYCEQMMS-RKLLPSCSAFNEMIRRLCECGNAKQA  252 (384)
Q Consensus       182 a~~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a  252 (384)
                      |...++.......+     +   +...-..  ..+..........++|-++.. .+..+|+.+...|.-.|--.|++++|
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            99999888654310     0   0000000  111122233444555555443 44457888899999999999999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681          253 NGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL-PAYTSLISSLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~  331 (384)
                      .+.|+.++...+. |..+||.|...++...+.++|+.-|++.++.  .|+. .+.-.|.-+|...|.+++|.+.|-..+.
T Consensus       450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            9999999987544 7889999999999999999999999999876  4553 3444477789999999999998866543


Q ss_pred             ---C------CCCCCHhHHHHHHHHHhccCCHHHHHHH
Q 016681          332 ---H------SLVPGVDIYESLVGIHLEKGNKAKALHL  360 (384)
Q Consensus       332 ---~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~  360 (384)
                         .      +..++..+|..|=.++.-.++.|-+.+.
T Consensus       527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence               1      1222456788887777777877755443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.04  E-value=2.3e-06  Score=82.96  Aligned_cols=307  Identities=9%  Similarity=0.039  Sum_probs=197.0

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHhcCC------CCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc----H
Q 016681           26 FNTLIHVVTKSDRNDLVWRIYQHMLENIR------YPN--EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM----V   93 (384)
Q Consensus        26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~   93 (384)
                      .......+...|+++++..++....+.-.      .+.  ......+...+...|++++|...+++........+    .
T Consensus       412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  491 (903)
T PRK04841        412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI  491 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence            34445556778999999999987754311      111  11222233455678999999999998765321222    1


Q ss_pred             HhHHHHHHHHHhhcchHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-
Q 016681           94 IVNTSLILRIIQEERIEEGMVLLKRMLRK----NM-IHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR----GFS--A-  161 (384)
Q Consensus        94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-  161 (384)
                      ...+.+...+...|++++|...+.+....    |. .+...++..+...+...|+++.|...+++....    +..  + 
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  571 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM  571 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence            34455666777899999999999887653    11 111234455667788899999999998887553    221  1 


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC--ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC-ChhhH
Q 016681          162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAG--LKP--YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP-SCSAF  236 (384)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~  236 (384)
                      ....+..+...+...|++++|...+++.....  ..+  ....+..+...+...|+++.|...+.......... ....+
T Consensus       572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~  651 (903)
T PRK04841        572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW  651 (903)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence            22334455667788899999999998875431  112  12344445667778899999999988875421110 11111


Q ss_pred             -----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-h
Q 016681          237 -----NEMIRRLCECGNAKQANGMLTLALDKGFSPN---EITYSHLIGGYAKEGEIQEVLKLYYEMEYK----SISPT-L  303 (384)
Q Consensus       237 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~  303 (384)
                           ...+..+...|+.+.|...+...........   ...+..+..++...|+.++|...+++....    |..++ .
T Consensus       652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a  731 (903)
T PRK04841        652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN  731 (903)
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence                 1122445567899999988877554221111   112345667788899999999999987653    22221 2


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681          304 PAYTSLISSLCQCGKLEEADKYFKIMKSH  332 (384)
Q Consensus       304 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  332 (384)
                      .+...+..++.+.|+.++|...+.+..+.
T Consensus       732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        732 RNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35566677888999999999999998774

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.03  E-value=4.8e-06  Score=66.66  Aligned_cols=286  Identities=12%  Similarity=0.037  Sum_probs=174.8

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHH---HHHHHhhcCChhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHccCChHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNT---LIHVVTKSDRNDLVWRIYQHMLENIRYPNEAT-IRTLISALCKGGQLQTY   77 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a   77 (384)
                      |++..|+.-|....+-    |+..|.+   -...|...|+...|+.=+...++.  +||... -..-...+.+.|.+++|
T Consensus        52 ~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A  125 (504)
T KOG0624|consen   52 GQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQA  125 (504)
T ss_pred             hhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHH
Confidence            4455566556555543    3333333   334567777777777777777663  555432 22334556777888888


Q ss_pred             HHHHHHHHhCCCCCc--HHhH------------HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 016681           78 VDMLDRIHGKRCSPM--VIVN------------TSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRN  143 (384)
Q Consensus        78 ~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  143 (384)
                      ..=|+.+.+.....+  ...+            ...+..+...|+...|++....+++-. +.|...+..-..+|...|+
T Consensus       126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e  204 (504)
T KOG0624|consen  126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGE  204 (504)
T ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCc
Confidence            888888777652111  1111            122344556677777777777777653 3367777777778888888


Q ss_pred             hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh----HHHH---------HHHHHh
Q 016681          144 LESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDET----FNLL---------IEGCAK  210 (384)
Q Consensus       144 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---------~~~~~~  210 (384)
                      +..|..=+....+.... +..++--+-..+...|+.+.++..+++..+.+  ||...    |..+         +.....
T Consensus       205 ~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie  281 (504)
T KOG0624|consen  205 PKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIE  281 (504)
T ss_pred             HHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88777666665554332 45555556677777888888887777777643  54322    2211         112234


Q ss_pred             cCchHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 016681          211 AKRIEESLSYCEQMMSRKLLPSC---SAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEV  287 (384)
Q Consensus       211 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  287 (384)
                      .++|.++++..+...+..+....   ..+..+-.++...+++.+|++.-.++++... .|+.++.--..+|.-..+++.|
T Consensus       282 ~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRAeA~l~dE~YD~A  360 (504)
T KOG0624|consen  282 EKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRAEAYLGDEMYDDA  360 (504)
T ss_pred             hhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhhhHHHHHH
Confidence            45666666666666665544222   2344555666677778888877777776422 1467777777777777778888


Q ss_pred             HHHHHHHHhcC
Q 016681          288 LKLYYEMEYKS  298 (384)
Q Consensus       288 ~~~~~~~~~~~  298 (384)
                      +.-|+...+.+
T Consensus       361 I~dye~A~e~n  371 (504)
T KOG0624|consen  361 IHDYEKALELN  371 (504)
T ss_pred             HHHHHHHHhcC
Confidence            88887777664

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.01  E-value=9.6e-07  Score=82.68  Aligned_cols=227  Identities=13%  Similarity=0.075  Sum_probs=146.2

Q ss_pred             CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH
Q 016681           90 SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIH-----DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSF  164 (384)
Q Consensus        90 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  164 (384)
                      |.+...|-..|......++.+.|.++.++++.. +.+     -...|.++++.-..-|.-+...++|+++.+..-  ...
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYT 1531 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHH
Confidence            445667777777777778888888887777653 111     223566666666666777777777777766521  334


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCC-CChhhHHHHHHHH
Q 016681          165 VYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLL-PSCSAFNEMIRRL  243 (384)
Q Consensus       165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~  243 (384)
                      .|..|...|.+.+.+++|.++++.|.+.- .-....|...+..+.+.++-+.|..++.+..+.-++ -........+..-
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            66777777777778888888887776642 133466777777777777777777777776654222 1234445555666


Q ss_pred             HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChHH
Q 016681          244 CECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL--PAYTSLISSLCQCGKLEE  321 (384)
Q Consensus       244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~  321 (384)
                      .+.|+.+++..+|+......++ ....|+.+++.-.++|+.+.+..+|+++...++.|-.  ..|...+..--..|+-+.
T Consensus      1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence            6777777777777777765333 5667777777777777777777777777777665532  234444444334444333

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=2.9e-06  Score=71.86  Aligned_cols=330  Identities=12%  Similarity=0.012  Sum_probs=208.1

Q ss_pred             HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681           31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE  110 (384)
Q Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  110 (384)
                      .+.+..|+++.|+..|...+.... +|...|..-..+|++.|++++|++=-.+-.+.. |.-...|+....++.-.|+++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~   87 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE   87 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence            466789999999999999988755 488899999999999999999988877777664 444678999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CC--------------------------------------------
Q 016681          111 EGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM---RN--------------------------------------------  143 (384)
Q Consensus       111 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~--------------------------------------------  143 (384)
                      +|+..|.+-++.... +...++-+..++...   ++                                            
T Consensus        88 eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l  166 (539)
T KOG0548|consen   88 EAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL  166 (539)
T ss_pred             HHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence            999999988776433 455555555444111   00                                            


Q ss_pred             -hHHHHHHHHHHHH--------c-------CCCC---------C-------------hHHHHHHHHHHHhcCCHHHHHHH
Q 016681          144 -LESALVVYEEMLK--------R-------GFSA---------N-------------SFVYTTFIGAYCEYGKIEEANCL  185 (384)
Q Consensus       144 -~~~a~~~~~~~~~--------~-------~~~~---------~-------------~~~~~~l~~~~~~~~~~~~a~~~  185 (384)
                       ........-.+..        .       +..|         .             ..-...+.++..+..+++.|++-
T Consensus       167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~  246 (539)
T KOG0548|consen  167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH  246 (539)
T ss_pred             ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence             0000000000000        0       0001         0             01123445555555666666666


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHH-------HHHHHHhcCChHHHHHHHHH
Q 016681          186 MQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNE-------MIRRLCECGNAKQANGMLTL  258 (384)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~  258 (384)
                      +....+..  -+..-++....+|...|.+..+........+.|.. ...-|+.       +..++.+.++++.+...|.+
T Consensus       247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k  323 (539)
T KOG0548|consen  247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK  323 (539)
T ss_pred             HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence            66665543  33334455556667777776666666655554432 2222222       23355556777777777777


Q ss_pred             HHhcCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 016681          259 ALDKGFSPNEITY-------------------------SHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSL  313 (384)
Q Consensus       259 ~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  313 (384)
                      .......|+...-                         ..-...+.+.|++..|...|.++++.. +-|...|....-+|
T Consensus       324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~  402 (539)
T KOG0548|consen  324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY  402 (539)
T ss_pred             HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence            6654444332211                         111334556788888888888888776 56777888888888


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681          314 CQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       314 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  368 (384)
                      .+.|.+..|..-.+..++.++. ....|..=..++....+++.|.+.|++.++..
T Consensus       403 ~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  403 LKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             HHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8888888888887777775332 33445444555666677888888888777644

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.96  E-value=7e-07  Score=78.19  Aligned_cols=219  Identities=15%  Similarity=0.113  Sum_probs=164.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 016681          128 TIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEG  207 (384)
Q Consensus       128 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  207 (384)
                      ...-..+...+...|-..+|..+|+++.         .|...+.+|...|+..+|..+..+-.+  -+|+...|..+...
T Consensus       398 Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  398 WQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV  466 (777)
T ss_pred             chHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence            3334455667778888888888887654         456678888999999999888887776  36888888888887


Q ss_pred             HHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 016681          208 CAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEV  287 (384)
Q Consensus       208 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  287 (384)
                      .....-+++|.++.+....+       +-..+.....+.++++++.+.|+.-.+.++ .-..+|-.+.-+..+.++++.|
T Consensus       467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHH
Confidence            77666778888887765332       222222333447888888888887776533 3567777777777888899999


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          288 LKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      .+.|....... +-+...||.+-.+|.+.|+-.+|...+++..+.+.. +...|...+.....-|.+++|.+.+.++.+.
T Consensus       539 v~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  539 VKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            99888887653 345668899999999999999999999988887743 6777888888888899999999998887754

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.91  E-value=2.7e-06  Score=78.59  Aligned_cols=237  Identities=14%  Similarity=0.079  Sum_probs=132.1

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNE-ATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLI  100 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  100 (384)
                      +...+..|+..+...+++++|.++.+...+.  .|+. ..|-.+...+.+.++..++..+                 .++
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l   90 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI   90 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence            4556666777776777777777777655553  2332 2222222344444544333332                 222


Q ss_pred             HHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Q 016681          101 LRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE  180 (384)
Q Consensus       101 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (384)
                      .......++..+..++..+...+  -+..++..+..+|-+.|+.+++..+++++.+.. +-|+.+.|.+...|... +.+
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~  166 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE  166 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence            33333333433333444444332  134466667777777778888888887777775 33677777777777777 777


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681          181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLAL  260 (384)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  260 (384)
                      +|.+++.+....               +...+++.++..++.++....+. +...+..+.                +.+.
T Consensus       167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~----------------~ki~  214 (906)
T PRK14720        167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE----------------RKVL  214 (906)
T ss_pred             HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------HHHH
Confidence            777777766543               44455666777777776665433 222222222                2222


Q ss_pred             hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 016681          261 DK-GFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLC  314 (384)
Q Consensus       261 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  314 (384)
                      .. +..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|.
T Consensus       215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            21 112233445555566667777777777777777664 334555555666554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.90  E-value=4.8e-06  Score=74.23  Aligned_cols=312  Identities=13%  Similarity=0.098  Sum_probs=145.5

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhc-C-------C-CCCHHHHHHHHHHHHccC
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLEN-I-------R-YPNEATIRTLISALCKGG   72 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~-~~~~~~~~~l~~~~~~~~   72 (384)
                      |+.|.|.+-.+.+.      +...|..+.+.|.+.++++-|.-.+..|... |       . .|+ .+-..........|
T Consensus       742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg  814 (1416)
T KOG3617|consen  742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG  814 (1416)
T ss_pred             ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence            55566655554443      4456666777777777666666555555321 1       1 111 12222222334556


Q ss_pred             ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 016681           73 QLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYE  152 (384)
Q Consensus        73 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  152 (384)
                      .+++|..+|++..+.+         .|=..|-..|.+++|.++-+.=-+-..   ..||......+-..++.+.|++.|+
T Consensus       815 MlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyE  882 (1416)
T KOG3617|consen  815 MLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYE  882 (1416)
T ss_pred             hHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHH
Confidence            6677777766665432         233344456666666665543222111   2244444444455566666666655


Q ss_pred             HHHHcC-------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 016681          153 EMLKRG-------------------FSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKR  213 (384)
Q Consensus       153 ~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  213 (384)
                      +...+.                   -..|...|.-.....-..|+.+.|+.+|....+         |-.+++..+-.|+
T Consensus       883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk  953 (1416)
T KOG3617|consen  883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK  953 (1416)
T ss_pred             hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence            421110                   001222222233333334444444444443322         2222233333444


Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc------------
Q 016681          214 IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE------------  281 (384)
Q Consensus       214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------  281 (384)
                      .++|-++-++-      -|......+.+.|-..|++.+|...|.++..         +...|+.|-.+            
T Consensus       954 ~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~ 1018 (1416)
T KOG3617|consen  954 TDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALM 1018 (1416)
T ss_pred             chHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhh
Confidence            44444443322      1344555566667777777777766655432         11222221111            


Q ss_pred             ---CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH-H-------HHhh--CCCCCCHhHHHHHHHHH
Q 016681          282 ---GEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYF-K-------IMKS--HSLVPGVDIYESLVGIH  348 (384)
Q Consensus       282 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~-------~~~~--~~~~~~~~~~~~l~~~~  348 (384)
                         .+.-.|-+.|++.   |.     -+...+..|-++|.+.+|+++- +       +++.  .+...|+...+.-..-+
T Consensus      1019 s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF 1090 (1416)
T KOG3617|consen 1019 SGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFF 1090 (1416)
T ss_pred             cCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence               1222222333221   11     1222344566777777776542 1       1122  23344666667667777


Q ss_pred             hccCCHHHHHHHHHHH
Q 016681          349 LEKGNKAKALHLCEEM  364 (384)
Q Consensus       349 ~~~g~~~~a~~~~~~~  364 (384)
                      +...++++|..++-..
T Consensus      1091 ~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1091 ENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred             HhHHHHHHHHHHHHHH
Confidence            7777777777665444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.88  E-value=1.6e-06  Score=66.76  Aligned_cols=154  Identities=9%  Similarity=0.016  Sum_probs=113.8

Q ss_pred             HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681           31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE  110 (384)
Q Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  110 (384)
                      -.|...|+++.+....+.+..    |.        ..+...++.+++...++...+.+ +.+...|..+...+...|+++
T Consensus        24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~   90 (198)
T PRK10370         24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD   90 (198)
T ss_pred             HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence            457788888876555433221    11        01123566777888888877776 778889999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 016681          111 EGMVLLKRMLRKNMIHDTIAYSLIVYAK-VKMRN--LESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQ  187 (384)
Q Consensus       111 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  187 (384)
                      +|...|++..+.... +...+..+..++ ...|+  .++|.+++++..+.... +...+..+...+.+.|++++|...|+
T Consensus        91 ~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~  168 (198)
T PRK10370         91 NALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ  168 (198)
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999998887644 677777777754 56676  48999999998887544 77788888888899999999999999


Q ss_pred             HHHHcCCCCChhh
Q 016681          188 EMENAGLKPYDET  200 (384)
Q Consensus       188 ~~~~~~~~~~~~~  200 (384)
                      ++.+.. +|+..-
T Consensus       169 ~aL~l~-~~~~~r  180 (198)
T PRK10370        169 KVLDLN-SPRVNR  180 (198)
T ss_pred             HHHhhC-CCCccH
Confidence            988765 455433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.87  E-value=1.2e-06  Score=70.24  Aligned_cols=186  Identities=9%  Similarity=0.077  Sum_probs=97.3

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH---HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCH--HHH
Q 016681           57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV---IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDT--IAY  131 (384)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~  131 (384)
                      ....+..+...+...|+++.|...|+++.... +.+.   ..+..+..++...|++++|...++++.+.......  .++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            34455556666666677777777776665543 2222   34555666666677777777777776654332111  123


Q ss_pred             HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 016681          132 SLIVYAKVKM--------RNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNL  203 (384)
Q Consensus       132 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  203 (384)
                      ..+..++.+.        |+.+.|.+.++.+...... +...+..+.....    ...      ...        .....
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~~  171 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKELY  171 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHHH
Confidence            3333334333        5566677777666654221 1112211111100    000      000        01113


Q ss_pred             HHHHHHhcCchHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681          204 LIEGCAKAKRIEESLSYCEQMMSRKLL--PSCSAFNEMIRRLCECGNAKQANGMLTLALDK  262 (384)
Q Consensus       204 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  262 (384)
                      +...+.+.|++.+|...++...+..+.  .....+..+..++...|++++|...++.+...
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344566677777777777776665321  12456667777777777777777777666554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12854 PPR_1: PPR repeat

Probab=98.86  E-value=4.1e-09  Score=54.77  Aligned_cols=29  Identities=31%  Similarity=0.712  Sum_probs=11.4

Q ss_pred             CCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 016681          300 SPTLPAYTSLISSLCQCGKLEEADKYFKI  328 (384)
Q Consensus       300 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  328 (384)
                      .||..||+.||.+|++.|++++|.++|++
T Consensus         4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            33333333333333333333333333333

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.85  E-value=1.8e-06  Score=69.27  Aligned_cols=188  Identities=11%  Similarity=0.019  Sum_probs=129.1

Q ss_pred             CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCC-CC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHH---h
Q 016681           21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRY-PN-EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVI---V   95 (384)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~   95 (384)
                      .....+-.+...+.+.|+++.|...|+.+...... |. ...+..+...+...|++++|...++++.+.. +.+..   .
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a  109 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA  109 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence            35667778888899999999999999999875332 11 2467778889999999999999999998765 22222   4


Q ss_pred             HHHHHHHHHhh--------cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH
Q 016681           96 NTSLILRIIQE--------ERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYT  167 (384)
Q Consensus        96 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  167 (384)
                      +..+..++...        |++++|.+.++++....+. +...+..+.....    ...      ...        ....
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~  170 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKEL  170 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence            55555556554        7899999999999876433 2223322211100    000      000        1112


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q 016681          168 TFIGAYCEYGKIEEANCLMQEMENAG--LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK  228 (384)
Q Consensus       168 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  228 (384)
                      .+...+.+.|++++|...++...+..  .+.....+..+..++.+.|++++|..+++.+....
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            45567888899999999998887653  12234677888888999999999999888876653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.84  E-value=4.2e-06  Score=73.55  Aligned_cols=214  Identities=14%  Similarity=0.080  Sum_probs=146.4

Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 016681           62 RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM  141 (384)
Q Consensus        62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  141 (384)
                      ..+...+.+.|-...|..+|+++         ..|...+.+|...|+..+|..+..+..++  +||...|..+.+.....
T Consensus       402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence            44556667777777777777764         34556777777778777777777776662  45777777776666555


Q ss_pred             CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHH
Q 016681          142 RNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYC  221 (384)
Q Consensus       142 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  221 (384)
                      .-+++|.++.+.....       .-..+.....+.++++++.+.|+.-.+.. +....+|-..-.+..+.+++..+.+.|
T Consensus       471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF  542 (777)
T KOG1128|consen  471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF  542 (777)
T ss_pred             HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence            5566666666554322       11222222334677888888777766543 233466777777777788888888888


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016681          222 EQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEY  296 (384)
Q Consensus       222 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  296 (384)
                      .......+. +...||.+-.+|.+.++-.+|...+.+..+.+. -+...|...+....+.|.+++|.+.+.++.+
T Consensus       543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            887776544 567788888888888888888888888887763 3566777777777788888888888887654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.83  E-value=2.2e-06  Score=65.96  Aligned_cols=149  Identities=13%  Similarity=0.067  Sum_probs=103.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 016681          170 IGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNA  249 (384)
Q Consensus       170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  249 (384)
                      +..|...|+++.+....+.+..    |. .       .+...++.+++...++...+.++. +...|..+...|...|++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence            4567788888776544432211    11 0       122356667777777777776654 777888888888888888


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681          250 KQANGMLTLALDKGFSPNEITYSHLIGGY-AKEGE--IQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYF  326 (384)
Q Consensus       250 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  326 (384)
                      +.|...++...+..+. +...+..+..++ ...|+  .++|.+++++..+.+ +-+..++..+...+.+.|++++|...|
T Consensus        90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~  167 (198)
T PRK10370         90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW  167 (198)
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888888888876543 677777777753 56666  488888888888775 345667777778888888888888888


Q ss_pred             HHHhhCC
Q 016681          327 KIMKSHS  333 (384)
Q Consensus       327 ~~~~~~~  333 (384)
                      +++.+..
T Consensus       168 ~~aL~l~  174 (198)
T PRK10370        168 QKVLDLN  174 (198)
T ss_pred             HHHHhhC
Confidence            8887753

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.81  E-value=2.5e-06  Score=65.76  Aligned_cols=162  Identities=14%  Similarity=0.073  Sum_probs=120.1

Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 016681           62 RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM  141 (384)
Q Consensus        62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  141 (384)
                      ..+-..+...|+-+....+........ +.+....+..+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            555666667777777777776655443 5566667778888888888888888888887654 45888888888888888


Q ss_pred             CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHH
Q 016681          142 RNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYC  221 (384)
Q Consensus       142 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  221 (384)
                      |+.+.|..-|.+..+.... ++...+.+.-.+.-.|+.+.|..++......+ .-|...-..+.......|+++.|..+.
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            8888888888888776332 66677788888888888888888888877665 335566666777777888888888777


Q ss_pred             HHHHhC
Q 016681          222 EQMMSR  227 (384)
Q Consensus       222 ~~~~~~  227 (384)
                      ..-...
T Consensus       226 ~~e~~~  231 (257)
T COG5010         226 VQELLS  231 (257)
T ss_pred             cccccc
Confidence            655443

>PF12854 PPR_1: PPR repeat

Probab=98.81  E-value=7.9e-09  Score=53.70  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=32.1

Q ss_pred             CCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681          332 HSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV  365 (384)
Q Consensus       332 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  365 (384)
                      +|+.||..+|+.||.+|++.|+.++|.++|++|.
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4789999999999999999999999999999984

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=7e-05  Score=68.65  Aligned_cols=85  Identities=12%  Similarity=0.114  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 016681          163 SFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRR  242 (384)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  242 (384)
                      +..|+.+.++-.+.|...+|++-|-+.      .|+..|..++....+.|.+++..+++....+....|.  .=+.++-+
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFA 1175 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHH
Confidence            445666666666666666665544321      2234466666666666666666665555444433333  22345555


Q ss_pred             HHhcCChHHHHHH
Q 016681          243 LCECGNAKQANGM  255 (384)
Q Consensus       243 ~~~~~~~~~a~~~  255 (384)
                      |++.++..+.+++
T Consensus      1176 yAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEF 1188 (1666)
T ss_pred             HHHhchHHHHHHH
Confidence            6666555544443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.80  E-value=2.9e-06  Score=74.73  Aligned_cols=47  Identities=6%  Similarity=0.055  Sum_probs=19.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHH
Q 016681          173 YCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYC  221 (384)
Q Consensus       173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  221 (384)
                      ......|.+|+.+++.+.....  ...-|..+...|+..|+++.|.++|
T Consensus       742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf  788 (1636)
T KOG3616|consen  742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELF  788 (1636)
T ss_pred             HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHH
Confidence            3334444444444444443321  1123344444444444444444444

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.77  E-value=3.5e-06  Score=76.96  Aligned_cols=146  Identities=12%  Similarity=0.013  Sum_probs=115.2

Q ss_pred             CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHH
Q 016681           55 YPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLI  134 (384)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  134 (384)
                      ..+...+..|.....+.|..++|..+++...+.. |.+......+...+.+.+++++|+..+++....... +......+
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~  160 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE  160 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence            3457788888888888899999999999888875 666778888888888999999999999988887654 66677777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 016681          135 VYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLL  204 (384)
Q Consensus       135 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  204 (384)
                      ..++.+.|++++|..+|+++...+. -+..++..+..++...|+.++|...|+...+.. .|....|+..
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~  228 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR  228 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence            8888888999999999999887432 357788888888888999999999998887653 3444444443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.77  E-value=4.9e-06  Score=64.16  Aligned_cols=158  Identities=15%  Similarity=0.091  Sum_probs=88.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 016681          132 SLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKA  211 (384)
Q Consensus       132 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  211 (384)
                      ..+-..+...|+-+....+....... .+.+.......++...+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            33444455555555555555443322 12244445556666666666666666666665544 55566666666666666


Q ss_pred             CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 016681          212 KRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLY  291 (384)
Q Consensus       212 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  291 (384)
                      |+.+.|..-|.+..+..+. ++...+.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|.++.
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence            6666666666666655433 4445555655666666666666666665554322 4455555555555666666666554


Q ss_pred             HH
Q 016681          292 YE  293 (384)
Q Consensus       292 ~~  293 (384)
                      ..
T Consensus       226 ~~  227 (257)
T COG5010         226 VQ  227 (257)
T ss_pred             cc
Confidence            43

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.75  E-value=1.6e-05  Score=73.70  Aligned_cols=206  Identities=10%  Similarity=0.043  Sum_probs=116.1

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      .+++++|.++.+...+.. +-....|-.+...+.+.++.+.+..+  .+               +.......++.....+
T Consensus        44 ~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~~~~~~~~~~ve~~  105 (906)
T PRK14720         44 ENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NL---------------IDSFSQNLKWAIVEHI  105 (906)
T ss_pred             cCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhhcccccchhHHHHH
Confidence            378899999999777763 22334444444466777776665544  22               2333333334333333


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS  160 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  160 (384)
                      ...+...  .-+...+..+..+|-+.|+.++|.++++++++.... |+.+.|.+...|... ++++|.+++.+....   
T Consensus       106 ~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---  178 (906)
T PRK14720        106 CDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---  178 (906)
T ss_pred             HHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence            3333332  334446667777777777777777777777776633 677777777777777 777777777666554   


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------------CCCChhhHHHHHHHHHhcCchHHHHHHH
Q 016681          161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG-------------------LKPYDETFNLLIEGCAKAKRIEESLSYC  221 (384)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~  221 (384)
                                  +...+++.++.+++.++....                   ..--..++-.+-..|...++++++..++
T Consensus       179 ------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL  246 (906)
T PRK14720        179 ------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL  246 (906)
T ss_pred             ------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence                        333344444444444444332                   1111233344445555566666666666


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHH
Q 016681          222 EQMMSRKLLPSCSAFNEMIRRLC  244 (384)
Q Consensus       222 ~~~~~~~~~~~~~~~~~l~~~~~  244 (384)
                      +.+.+.... |..+..-++.+|.
T Consensus       247 K~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        247 KKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             HHHHhcCCc-chhhHHHHHHHHH
Confidence            666665444 4444444444443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=2e-05  Score=60.98  Aligned_cols=249  Identities=14%  Similarity=0.067  Sum_probs=119.4

Q ss_pred             HHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcch
Q 016681           30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERI  109 (384)
Q Consensus        30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  109 (384)
                      ++-+.-.|++..++..-.......  -+...-..+.++|...|.....   ..++.... .|.......+......-++.
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~---~~eI~~~~-~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIV---ISEIKEGK-ATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccc---cccccccc-CChHHHHHHHHHHhhCcchh
Confidence            345555666666655544433321  2333333344555555544332   22222222 23333333333333323333


Q ss_pred             HHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016681          110 EEG-MVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQE  188 (384)
Q Consensus       110 ~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  188 (384)
                      +.- -++.+.+.......+......-...|++.+++++|++..+...      +......=+..+.+..+++-|.+.+++
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~  162 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK  162 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322 2333334333333233333333445666777777776665421      222333333445556666677777766


Q ss_pred             HHHcCCCCChhhHHHHHHHHHh----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 016681          189 MENAGLKPYDETFNLLIEGCAK----AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGF  264 (384)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  264 (384)
                      |.+-   .+..|.+.|.+++.+    .+....|.-+|++|-++ ..|++.+.+-...++...+++++|..+++....+..
T Consensus       163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~  238 (299)
T KOG3081|consen  163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA  238 (299)
T ss_pred             HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            6652   233455555555443    23466666666666553 345666666666666666666666666666666543


Q ss_pred             CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 016681          265 SPNEITYSHLIGGYAKEGEI-QEVLKLYYEME  295 (384)
Q Consensus       265 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~  295 (384)
                      . ++.+...++.+-...|.. +...+.+.++.
T Consensus       239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk  269 (299)
T KOG3081|consen  239 K-DPETLANLIVLALHLGKDAEVTERNLSQLK  269 (299)
T ss_pred             C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            3 444444444443334433 22333444443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.74  E-value=3.8e-05  Score=59.05  Aligned_cols=190  Identities=13%  Similarity=0.074  Sum_probs=130.7

Q ss_pred             cCChhHHHHHHHHHHhc---C-CCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681           36 SDRNDLVWRIYQHMLEN---I-RYPNEA-TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE  110 (384)
Q Consensus        36 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  110 (384)
                      .++.++..+++..+...   | ..|+.. .|..++-+....|+.+.|...++++...- +-+..+-..-.-.+-..|.++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence            45677788887777643   3 445544 35556666677888888998888877653 333333322233355678889


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681          111 EGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEME  190 (384)
Q Consensus       111 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  190 (384)
                      +|.++++.+.+.++. |..++-.=+...-..|+.-+|.+-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus       104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            999999999887633 6667766666666677777888888887776 55688899999999999999999999998887


Q ss_pred             HcCCCCChhhHHHHHHHHHhcC---chHHHHHHHHHHHhCCC
Q 016681          191 NAGLKPYDETFNLLIEGCAKAK---RIEESLSYCEQMMSRKL  229 (384)
Q Consensus       191 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~  229 (384)
                      -.. +.+...+..+...+.-.|   +.+.+.++|.+..+...
T Consensus       182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            653 333444555555444333   56677788887777654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.74  E-value=3.1e-06  Score=61.62  Aligned_cols=93  Identities=9%  Similarity=-0.093  Sum_probs=48.2

Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 016681           63 TLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR  142 (384)
Q Consensus        63 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  142 (384)
                      .+...+...|++++|...|+...... +.+...|..+...+.+.|++++|...|++....+.. +...+..+..++...|
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence            34444455555555555555555444 444555555555555555555555555555544322 4444555555555555


Q ss_pred             ChHHHHHHHHHHHHc
Q 016681          143 NLESALVVYEEMLKR  157 (384)
Q Consensus       143 ~~~~a~~~~~~~~~~  157 (384)
                      ++++|...|+...+.
T Consensus       107 ~~~eAi~~~~~Al~~  121 (144)
T PRK15359        107 EPGLAREAFQTAIKM  121 (144)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            555555555555443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=1.7e-05  Score=61.31  Aligned_cols=249  Identities=14%  Similarity=0.061  Sum_probs=127.5

Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 016681           66 SALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE  145 (384)
Q Consensus        66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  145 (384)
                      +-+.-.|.+..++..-.......  .++..-..+-++|...|.+.....   +..... .|.......+......-++.+
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~   89 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK   89 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence            33444566666666555443321  333444445566666665543322   222211 233333333333333233322


Q ss_pred             H-HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 016681          146 S-ALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQM  224 (384)
Q Consensus       146 ~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  224 (384)
                      + ..++.+.+.......+......-...|...|++++|++......      +......=...+.+..+.+-|.+.++.|
T Consensus        90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m  163 (299)
T KOG3081|consen   90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM  163 (299)
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 23334444444333333334444456677777777777665521      1122222234455666677777777777


Q ss_pred             HhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 016681          225 MSRKLLPSCSAFNEMIRRLCE----CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS  300 (384)
Q Consensus       225 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  300 (384)
                      .+..   +..|.+.+..++.+    .+....|.-+|+++.++ .+|+..+.+....++...|++++|..+++....+. .
T Consensus       164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~  238 (299)
T KOG3081|consen  164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-A  238 (299)
T ss_pred             Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-C
Confidence            6643   44555555555443    34566677777777654 45666777777777777777777777777766654 2


Q ss_pred             CChhhHHHHHHHHHhcCCh-HHHHHHHHHHhh
Q 016681          301 PTLPAYTSLISSLCQCGKL-EEADKYFKIMKS  331 (384)
Q Consensus       301 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~  331 (384)
                      .++.+...++.+-...|.. +-..+.+..++.
T Consensus       239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            3445554455444444443 333444555544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.73  E-value=2.3e-05  Score=71.77  Aligned_cols=146  Identities=13%  Similarity=0.058  Sum_probs=99.4

Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681          160 SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM  239 (384)
Q Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  239 (384)
                      ..+...+-.|..+..+.|.+++|+.+++...+.. +-+......+...+.+.+++++|....++.....+. +......+
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~  160 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE  160 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence            3356677777777777777777777777777643 233455666677777777777777777777776654 56666667


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 016681          240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSL  309 (384)
Q Consensus       240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  309 (384)
                      ..++.+.|++++|..+|+++...+.. +...+..+...+...|+.++|...|++..+.. .|....|+.+
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~  228 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR  228 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence            77777777777777777777764322 46677777777777777777777777776653 3444444443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.72  E-value=3.4e-05  Score=70.46  Aligned_cols=350  Identities=10%  Similarity=-0.030  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 016681            5 EVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIR-YPNEATIRTLISALCKGGQLQTYVDMLDR   83 (384)
Q Consensus         5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   83 (384)
                      .+|.+.|+...+.. ..+..++..+...|++..+++.|..+.-..-+... ..-...|....-.+.+.++...|+.-|+.
T Consensus       509 ~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs  587 (1238)
T KOG1127|consen  509 KRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS  587 (1238)
T ss_pred             HHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH
Confidence            44555555555543 23555566666666666666666655222211100 00111222233344555666666666666


Q ss_pred             HHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHHc----
Q 016681           84 IHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSL--IVYAKVKMRNLESALVVYEEMLKR----  157 (384)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~----  157 (384)
                      ..+.. |.|...|..+..+|.++|++..|.++|.+.....  |+. +|..  ..-..+..|.+.++...+......    
T Consensus       588 ALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e  663 (1238)
T KOG1127|consen  588 ALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE  663 (1238)
T ss_pred             HhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            66655 6677778888888888888888888887776543  221 2222  222334567777777776665432    


Q ss_pred             --CCCCChHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchH------HHHHHH-
Q 016681          158 --GFSANSFVYTTFIGAYCEYGKI-------EEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIE------ESLSYC-  221 (384)
Q Consensus       158 --~~~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~-  221 (384)
                        +..--..++..+...+.-.|-.       +++++.|--...+....+...|..+-.+|.-.-..+      ....++ 
T Consensus       664 ~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~  743 (1238)
T KOG1127|consen  664 RTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILS  743 (1238)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHH
Confidence              1111112222222222222222       223333322222221222222222211111000000      000000 


Q ss_pred             HHHHhCCC--------------------CCChhhHHHHHHHHHh----cC----ChHHHHHHHHHHHhcCCCCCHHHHHH
Q 016681          222 EQMMSRKL--------------------LPSCSAFNEMIRRLCE----CG----NAKQANGMLTLALDKGFSPNEITYSH  273 (384)
Q Consensus       222 ~~~~~~~~--------------------~~~~~~~~~l~~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~  273 (384)
                      .+....+.                    ..+..+|..+...|.+    .+    +...|...+....+..- .+..+|+.
T Consensus       744 ~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~Wna  822 (1238)
T KOG1127|consen  744 KQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNA  822 (1238)
T ss_pred             HHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHH
Confidence            00111111                    1122333333333322    11    22345555555554322 25556665


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCC
Q 016681          274 LIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGN  353 (384)
Q Consensus       274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  353 (384)
                      |... ...|++.-+...|-+-.... +.+..+|..+...+.+..+++-|...|.......+. +...|-.........|+
T Consensus       823 LGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~  899 (1238)
T KOG1127|consen  823 LGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGR  899 (1238)
T ss_pred             HHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHH
Confidence            5544 44456666666665544442 334556666666666777777777777776665433 44555544444455666


Q ss_pred             HHHHHHHHHH
Q 016681          354 KAKALHLCEE  363 (384)
Q Consensus       354 ~~~a~~~~~~  363 (384)
                      .-++..+|..
T Consensus       900 ii~~~~lfaH  909 (1238)
T KOG1127|consen  900 IIERLILFAH  909 (1238)
T ss_pred             HHHHHHHHHh
Confidence            6566655554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.71  E-value=4e-06  Score=61.05  Aligned_cols=93  Identities=11%  Similarity=-0.087  Sum_probs=44.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 016681          168 TFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECG  247 (384)
Q Consensus       168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  247 (384)
                      .+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+.....++. +...+..+..++...|
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence            33444445555555555555544433 233444444444555555555555555555444332 4444444444555555


Q ss_pred             ChHHHHHHHHHHHhc
Q 016681          248 NAKQANGMLTLALDK  262 (384)
Q Consensus       248 ~~~~a~~~~~~~~~~  262 (384)
                      ++++|...|+...+.
T Consensus       107 ~~~eAi~~~~~Al~~  121 (144)
T PRK15359        107 EPGLAREAFQTAIKM  121 (144)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            555555555554443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.70  E-value=0.00014  Score=62.22  Aligned_cols=349  Identities=11%  Similarity=0.076  Sum_probs=203.7

Q ss_pred             CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 016681           20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSL   99 (384)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   99 (384)
                      +-|..+|+.|++-+... -.+++.+.|+++... .+-....|..-|..-....+++....+|.+....  ..+...|...
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY   92 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY   92 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence            66999999999988776 999999999999875 3335778999999999999999999999998866  4557778777


Q ss_pred             HHHHHhh-cchHH----HHHHHHHH-HHcCCCC-CHHHHHHHHHH---------HHhcCChHHHHHHHHHHHHcCCCC--
Q 016681          100 ILRIIQE-ERIEE----GMVLLKRM-LRKNMIH-DTIAYSLIVYA---------KVKMRNLESALVVYEEMLKRGFSA--  161 (384)
Q Consensus       100 ~~~~~~~-~~~~~----a~~~~~~~-~~~~~~~-~~~~~~~ll~~---------~~~~~~~~~a~~~~~~~~~~~~~~--  161 (384)
                      +.--.+. ++...    ..+.|+-. .+.|+.+ +...|+..+..         +....+.+...+++.++....+.-  
T Consensus        93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE  172 (656)
T KOG1914|consen   93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE  172 (656)
T ss_pred             HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence            7544332 22222    22233322 2345433 22234444432         233445666777777776542210  


Q ss_pred             ----ChHHHHHHHHHH-------HhcCCHHHHHHHHHHHHH--cCCCCChhh---------------HHHHHHHH-----
Q 016681          162 ----NSFVYTTFIGAY-------CEYGKIEEANCLMQEMEN--AGLKPYDET---------------FNLLIEGC-----  208 (384)
Q Consensus       162 ----~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~~~-----  208 (384)
                          |-..|..-|+..       -+...+..|.++++++..  .|+.....+               |..+|.-=     
T Consensus       173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL  252 (656)
T KOG1914|consen  173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL  252 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence                111111111111       122335556666655542  121111111               11111100     


Q ss_pred             --------------------------------------------HhcCc-------hHHHHHHHHHHHhCCCCCChhhHH
Q 016681          209 --------------------------------------------AKAKR-------IEESLSYCEQMMSRKLLPSCSAFN  237 (384)
Q Consensus       209 --------------------------------------------~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~  237 (384)
                                                                  ...|+       .+++..+++.....-...+..+|.
T Consensus       253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~  332 (656)
T KOG1914|consen  253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF  332 (656)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                        00111       122223333222211111222222


Q ss_pred             HHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHH
Q 016681          238 EMIRRLCECG---NAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP-TLPAYTSLISSL  313 (384)
Q Consensus       238 ~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~  313 (384)
                      .+...--..-   ..+....+++.+...-..--.-+|..++....+...+..|..+|.+..+.+..+ +..++++++.-+
T Consensus       333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~  412 (656)
T KOG1914|consen  333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY  412 (656)
T ss_pred             HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence            2221111111   244455555555543222223467888888888889999999999999987766 667788888877


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 016681          314 CQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTS  374 (384)
Q Consensus       314 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  374 (384)
                      | .++.+-|.++|+--.++ ...++..-...+.-+...++-..|..+|++....++.||.+
T Consensus       413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks  471 (656)
T KOG1914|consen  413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS  471 (656)
T ss_pred             h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence            6 47889999999976653 22245555677888888999999999999999887777653

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=6.4e-05  Score=57.82  Aligned_cols=188  Identities=12%  Similarity=0.152  Sum_probs=143.7

Q ss_pred             cchHHHHHHHHHHHhc---C-CCCchhh-HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH
Q 016681            2 RLFEVAFDVCRYLEQR---G-FSLSLIS-FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQT   76 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   76 (384)
                      ++.++.++++..+...   | ..++..+ |..++-+....|+.+.|...++.+..+- +-+..+-..-.-.+-..|++++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence            5678888888888543   3 4455544 6778888899999999999999998874 2233332222333455799999


Q ss_pred             HHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016681           77 YVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLK  156 (384)
Q Consensus        77 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  156 (384)
                      |.++++.+.+.+ |.|..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus       105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            999999999988 778888887777777888888999988888776 455999999999999999999999999999987


Q ss_pred             cCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 016681          157 RGFSANSFVYTTFIGAYCEYG---KIEEANCLMQEMENAG  193 (384)
Q Consensus       157 ~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~  193 (384)
                      ..+ .++..+..+...+.-.|   +.+.+.++|.+..+..
T Consensus       183 ~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  183 IQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             cCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            632 25556666666655554   4667888888887754

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.68  E-value=0.00012  Score=61.91  Aligned_cols=112  Identities=13%  Similarity=0.095  Sum_probs=56.9

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCchHH
Q 016681          138 KVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPY-DETFNLLIEGCAKAKRIEE  216 (384)
Q Consensus       138 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~  216 (384)
                      +...|++++|+..++.+... .+-|+..+......+.+.++.++|.+.++++....  |+ ....-.+..++.+.|++.+
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence            33445555555555555444 22244444444555555555555555555555432  33 2334444455555555555


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH
Q 016681          217 SLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQAN  253 (384)
Q Consensus       217 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  253 (384)
                      |..+++......+. ++..|..+.++|...|+..++.
T Consensus       393 ai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~  428 (484)
T COG4783         393 AIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEAL  428 (484)
T ss_pred             HHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHH
Confidence            55555555544333 5555555555555555544443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.67  E-value=0.00029  Score=64.83  Aligned_cols=132  Identities=14%  Similarity=0.177  Sum_probs=58.8

Q ss_pred             HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681           31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE  110 (384)
Q Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  110 (384)
                      ..+..++-+++|..+|+..-     .+....+.|+.-   -+.++.|.+.-++..      .+..|..+..+-.+.|...
T Consensus      1056 ~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred             HHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchH
Confidence            33444555555555555432     133333433332   234444444443322      1344555555555555555


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 016681          111 EGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANC  184 (384)
Q Consensus       111 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  184 (384)
                      +|.+-|-+.   +   |+..|..+++...+.|.+++..+++...++..-.|.  .=+.++-+|++.++..+.++
T Consensus      1122 dAieSyika---d---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1122 DAIESYIKA---D---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred             HHHHHHHhc---C---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHH
Confidence            554433222   1   344455555555555555555555544444333222  22344455555555444433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.59  E-value=0.00047  Score=62.62  Aligned_cols=221  Identities=11%  Similarity=0.110  Sum_probs=133.3

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHH--HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHV--VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVD   79 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   79 (384)
                      +++..|+.....+.+..  |+.. |..++.+  +.+.|+.++|..+++.....+.. |..|...+-..|...++.++|..
T Consensus        23 ~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence            57888999888887652  3332 2233333  56889999999888877665544 78899999999999999999999


Q ss_pred             HHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-C---------hHHHHH
Q 016681           80 MLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR-N---------LESALV  149 (384)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~---------~~~a~~  149 (384)
                      +|++.....  |+......+..+|.+.+++.+-.+.--++-+. ++-+...|-+++....... .         ..-|.+
T Consensus        99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~  175 (932)
T KOG2053|consen   99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK  175 (932)
T ss_pred             HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence            999998774  55777778888888888776544444444332 2224444444444443321 1         123444


Q ss_pred             HHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681          150 VYEEMLKRG-FSANSFVYTTFIGAYCEYGKIEEANCLMQE-MENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSR  227 (384)
Q Consensus       150 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  227 (384)
                      .++.+.+.+ ..-+..-...-.......|++++|.+++.. ..+.-...+...-+.-+..+...+++.+..++..++...
T Consensus       176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            555554443 222222233334455567778888777732 222222222233334455555566666666666666555


Q ss_pred             CC
Q 016681          228 KL  229 (384)
Q Consensus       228 ~~  229 (384)
                      +.
T Consensus       256 ~~  257 (932)
T KOG2053|consen  256 GN  257 (932)
T ss_pred             CC
Confidence            43

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.59  E-value=3.2e-05  Score=69.29  Aligned_cols=240  Identities=13%  Similarity=0.149  Sum_probs=156.8

Q ss_pred             chhhHHHHHHH--HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC---------CC
Q 016681           22 SLISFNTLIHV--VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKR---------CS   90 (384)
Q Consensus        22 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~   90 (384)
                      |..|-..+++.  |...|+.+.|.+-.+.++      +...|..+.++|.+..+++-|.-.+-.|....         -.
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~  798 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN  798 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            66666666644  777899999888776654      55789999999999988888777666654321         01


Q ss_pred             CcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHH
Q 016681           91 PMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFI  170 (384)
Q Consensus        91 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  170 (384)
                      ++ ..-....-.....|..++|+.+|++..+.+         .|=..|-..|.+++|.++-+.--...   =..||....
T Consensus       799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA  865 (1416)
T KOG3617|consen  799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA  865 (1416)
T ss_pred             Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence            21 222223334467788999999999887642         23345667899999998765432211   234666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc----------C---------CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC
Q 016681          171 GAYCEYGKIEEANCLMQEMENA----------G---------LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP  231 (384)
Q Consensus       171 ~~~~~~~~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  231 (384)
                      .-+-..++.+.|++.|++....          .         -..|...|......+-..|+.+.|+.+|.....     
T Consensus       866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----  940 (1416)
T KOG3617|consen  866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----  940 (1416)
T ss_pred             HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence            7777788888888888653211          1         012223344444444455666666666655432     


Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681          232 SCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEME  295 (384)
Q Consensus       232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  295 (384)
                          |.++++..|-.|+.++|-++-++-      -|....-.+.+.|...|++.+|..+|.+..
T Consensus       941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                445666667778888877765432      256667778899999999999999998775

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.58  E-value=7.8e-06  Score=59.15  Aligned_cols=92  Identities=13%  Similarity=0.037  Sum_probs=38.8

Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 016681           63 TLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR  142 (384)
Q Consensus        63 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  142 (384)
                      .+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...+++....+.. +...+..+...+...|
T Consensus        22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g   99 (135)
T TIGR02552        22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALG   99 (135)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcC
Confidence            33334444444444444444444333 333444444444444444444444444444333211 3333333344444444


Q ss_pred             ChHHHHHHHHHHHH
Q 016681          143 NLESALVVYEEMLK  156 (384)
Q Consensus       143 ~~~~a~~~~~~~~~  156 (384)
                      +++.|...|+...+
T Consensus       100 ~~~~A~~~~~~al~  113 (135)
T TIGR02552       100 EPESALKALDLAIE  113 (135)
T ss_pred             CHHHHHHHHHHHHH
Confidence            44444444444433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.57  E-value=0.00016  Score=61.04  Aligned_cols=182  Identities=16%  Similarity=0.124  Sum_probs=131.9

Q ss_pred             CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016681           56 PNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIV  135 (384)
Q Consensus        56 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  135 (384)
                      |+...+...+.+......-..+..++.+..+   +.-...+-...-.+...|+++.|+..++.++.... -|...+....
T Consensus       272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~  347 (484)
T COG4783         272 PDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAG  347 (484)
T ss_pred             ccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHH
Confidence            4445555555544433333333333333222   11223333334456678999999999999988743 3777777788


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCch
Q 016681          136 YAKVKMRNLESALVVYEEMLKRGFSAN-SFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRI  214 (384)
Q Consensus       136 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  214 (384)
                      ..+.+.++.++|.+.++.+...  .|+ ....-.+..++.+.|++.+|+.+++...... +-|...|..|.++|...|+.
T Consensus       348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch
Confidence            8999999999999999999987  334 6667778899999999999999999988765 67789999999999999998


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681          215 EESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK  262 (384)
Q Consensus       215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  262 (384)
                      .++.....+                  .+...|+++.|...+....+.
T Consensus       425 ~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         425 AEALLARAE------------------GYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence            877655444                  455678889998888888765

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.56  E-value=9.8e-06  Score=58.61  Aligned_cols=96  Identities=13%  Similarity=0.082  Sum_probs=44.1

Q ss_pred             HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 016681           94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAY  173 (384)
Q Consensus        94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  173 (384)
                      .....+...+...|++++|.+.++.+...+.. +...+..+...+.+.|+++.|..+++...+.+ +.+...+..+..++
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~   95 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            33344444444455555555555554443321 34444444444445555555555555444432 12334444444445


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 016681          174 CEYGKIEEANCLMQEMEN  191 (384)
Q Consensus       174 ~~~~~~~~a~~~~~~~~~  191 (384)
                      ...|++++|...|+...+
T Consensus        96 ~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        96 LALGEPESALKALDLAIE  113 (135)
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            555555555555544444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.56  E-value=0.00029  Score=62.74  Aligned_cols=44  Identities=14%  Similarity=0.061  Sum_probs=29.6

Q ss_pred             cchHHHHHHHHHHHhcCCCCch-hhHHHHHHHHhhcCChhHHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSL-ISFNTLIHVVTKSDRNDLVWRIYQH   48 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~   48 (384)
                      |++++|..+++....   .|+. ..|-.+.......|++--|.+.|..
T Consensus       458 ~df~ra~afles~~~---~~da~amw~~laelale~~nl~iaercfaa  502 (1636)
T KOG3616|consen  458 GDFDRATAFLESLEM---GPDAEAMWIRLAELALEAGNLFIAERCFAA  502 (1636)
T ss_pred             CchHHHHHHHHhhcc---CccHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            788999988887654   2444 5577777777777766665555543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.55  E-value=0.00024  Score=65.25  Aligned_cols=353  Identities=12%  Similarity=-0.008  Sum_probs=197.5

Q ss_pred             HHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 016681            5 EVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRI   84 (384)
Q Consensus         5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   84 (384)
                      ..|+..|=+..+.. +-=...|..+...|....+...|.+.|+..-+... -+..........|++..+++.|..+.-..
T Consensus       475 ~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~  552 (1238)
T KOG1127|consen  475 ALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRA  552 (1238)
T ss_pred             HHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence            34444444444432 12345677788888877788888888888776533 25667777888888888898888884433


Q ss_pred             HhCC-CCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 016681           85 HGKR-CSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANS  163 (384)
Q Consensus        85 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  163 (384)
                      .+.. ...-...|..+.-.|...++...|..-|+...+..+. |...|..+..+|...|.+..|.++|.+....  .|+ 
T Consensus       553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-  628 (1238)
T KOG1127|consen  553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-  628 (1238)
T ss_pred             hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-
Confidence            3322 0111233444455667788888888888888777654 8888999999999999999999999888765  222 


Q ss_pred             HHHHHH--HHHHHhcCCHHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCch-------HHHHHHHHHHHhCC
Q 016681          164 FVYTTF--IGAYCEYGKIEEANCLMQEMENAG------LKPYDETFNLLIEGCAKAKRI-------EESLSYCEQMMSRK  228 (384)
Q Consensus       164 ~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~  228 (384)
                      .+|...  .-..+..|.+.+|...+..+....      ...-..++..+...+.-.|-.       +++++.|.-.....
T Consensus       629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~  708 (1238)
T KOG1127|consen  629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS  708 (1238)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence            233322  234456788888888887765421      111122333222222222222       23333332222222


Q ss_pred             CCCChhhHHHHHHHHH---hcC-C-h-HHHHHHH-HHHHhcCC--------------------CCCHHHHHHHHHHHHh-
Q 016681          229 LLPSCSAFNEMIRRLC---ECG-N-A-KQANGML-TLALDKGF--------------------SPNEITYSHLIGGYAK-  280 (384)
Q Consensus       229 ~~~~~~~~~~l~~~~~---~~~-~-~-~~a~~~~-~~~~~~~~--------------------~~~~~~~~~l~~~~~~-  280 (384)
                      ...+...|-.+-++|.   ... + + .....++ .+....+.                    ..+..+|..++..|.+ 
T Consensus       709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~  788 (1238)
T KOG1127|consen  709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY  788 (1238)
T ss_pred             hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence            1112222211111111   000 0 0 0000000 01111111                    1123445444444433 


Q ss_pred             -------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCC
Q 016681          281 -------EGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGN  353 (384)
Q Consensus       281 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  353 (384)
                             ..+...|...+.+..+.. ..+..+|+.|.-. ...|++.-|.-.|-+-+...+. +..+|..+...+.+..+
T Consensus       789 f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d  865 (1238)
T KOG1127|consen  789 FLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQD  865 (1238)
T ss_pred             HHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEeccc
Confidence                   123346777777766553 3455566655444 5557777777766655554333 66778888888889999


Q ss_pred             HHHHHHHHHHHHh
Q 016681          354 KAKALHLCEEMVS  366 (384)
Q Consensus       354 ~~~a~~~~~~~~~  366 (384)
                      ++.|...|...+.
T Consensus       866 ~E~A~~af~~~qS  878 (1238)
T KOG1127|consen  866 FEHAEPAFSSVQS  878 (1238)
T ss_pred             HHHhhHHHHhhhh
Confidence            9999999888764

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.45  E-value=1.3e-05  Score=67.76  Aligned_cols=120  Identities=17%  Similarity=0.078  Sum_probs=56.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 016681          239 MIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGK  318 (384)
Q Consensus       239 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  318 (384)
                      ++..+...++++.|..+++++.+..  |+  ....+++.+...++-.+|.+++++..+.. +-+...+..-...|.+.++
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~  249 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK  249 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence            3334444445555555555555442  22  22234444444445555555555554332 2233333333444555555


Q ss_pred             hHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHH
Q 016681          319 LEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEM  364 (384)
Q Consensus       319 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  364 (384)
                      ++.|..+.+++.+..+. +..+|..|..+|...|+++.|+-.++.+
T Consensus       250 ~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  250 YELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            55555555555553222 3445555555555555555555555544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.41  E-value=1.6e-05  Score=67.28  Aligned_cols=128  Identities=17%  Similarity=0.216  Sum_probs=96.9

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016681           57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVY  136 (384)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  136 (384)
                      +......++..+...++++.|+++|+++.+..  |+  ....+++.+...++..+|.+++++....... +......-..
T Consensus       168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~  242 (395)
T PF09295_consen  168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAE  242 (395)
T ss_pred             chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            34455566777777788889999998888764  43  3445777777788888888888888865432 6666676777


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681          137 AKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEME  190 (384)
Q Consensus       137 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  190 (384)
                      .+.+.++++.|.++.+++.+..+ -+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus       243 fLl~k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  243 FLLSKKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            78888889999999888887632 255688889999999999999988888765

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.41  E-value=5.5e-07  Score=47.59  Aligned_cols=33  Identities=30%  Similarity=0.569  Sum_probs=21.4

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 016681          340 IYESLVGIHLEKGNKAKALHLCEEMVSEGLKPS  372 (384)
Q Consensus       340 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~  372 (384)
                      +|+.++.+|++.|++++|.++|++|.+.|++||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            466666666666666666666666666666665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.40  E-value=4.5e-05  Score=55.77  Aligned_cols=115  Identities=11%  Similarity=0.141  Sum_probs=55.8

Q ss_pred             cCChHHHHHHHHHHHhCCCCCc---HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChH
Q 016681           71 GGQLQTYVDMLDRIHGKRCSPM---VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHD--TIAYSLIVYAKVKMRNLE  145 (384)
Q Consensus        71 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~  145 (384)
                      .++...+...++.+.... +.+   ....-.+...+...|++++|...|+.+......|+  ......+...+...|+++
T Consensus        24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            455555555555555443 222   12222333455555666666666666555442221  112233445555566666


Q ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016681          146 SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQE  188 (384)
Q Consensus       146 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  188 (384)
                      +|...++.....  ......+.....++.+.|++++|...|+.
T Consensus       103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666665443222  12333444455556666666666655544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.39  E-value=0.0017  Score=59.24  Aligned_cols=226  Identities=13%  Similarity=0.103  Sum_probs=140.0

Q ss_pred             HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHH
Q 016681           33 VTKSDRNDLVWRIYQHMLENIRYPNEATIRTL-ISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEE  111 (384)
Q Consensus        33 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  111 (384)
                      ....+++.+|......+.+.  .|+......+ .-.+.+.|+.++|..+++.....+ ..|..+...+-..|...+..++
T Consensus        19 ~ld~~qfkkal~~~~kllkk--~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKK--HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence            45677888888888887775  2443322111 123467788888888888776665 4477788888888888888888


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC----------HHH
Q 016681          112 GMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGK----------IEE  181 (384)
Q Consensus       112 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~  181 (384)
                      |..+|++..+..  |+......+..+|++.+++.+-.++--++-+. ++-+...+-++++.+...-.          ..-
T Consensus        96 ~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L  172 (932)
T KOG2053|consen   96 AVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL  172 (932)
T ss_pred             HHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence            888888887754  45666666777788877776655544444433 33355566566666554321          123


Q ss_pred             HHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCchHHHHHHHH-HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016681          182 ANCLMQEMENAG-LKPYDETFNLLIEGCAKAKRIEESLSYCE-QMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLA  259 (384)
Q Consensus       182 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  259 (384)
                      |.+.++.+.+.+ ..-+..-...-...+...|++++|..++. ...+.-...+...-+.-+..+...+++.+..++-.++
T Consensus       173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L  252 (932)
T KOG2053|consen  173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL  252 (932)
T ss_pred             HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            444555555443 11122222222333445677888888873 3444333334444556677777888888888888888


Q ss_pred             HhcCC
Q 016681          260 LDKGF  264 (384)
Q Consensus       260 ~~~~~  264 (384)
                      ...|.
T Consensus       253 l~k~~  257 (932)
T KOG2053|consen  253 LEKGN  257 (932)
T ss_pred             HHhCC
Confidence            77754

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.34  E-value=8.7e-07  Score=46.43  Aligned_cols=33  Identities=33%  Similarity=0.609  Sum_probs=20.7

Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 016681          339 DIYESLVGIHLEKGNKAKALHLCEEMVSEGLKP  371 (384)
Q Consensus       339 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p  371 (384)
                      .+|+.++.+|.+.|+++.|.+++++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            356666666666666666666666666666655

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.31  E-value=1.5e-06  Score=45.91  Aligned_cols=33  Identities=42%  Similarity=0.750  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 016681          270 TYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT  302 (384)
Q Consensus       270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  302 (384)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            345555555555555555555555555555444

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.31  E-value=2.8e-05  Score=66.17  Aligned_cols=124  Identities=16%  Similarity=0.175  Sum_probs=97.6

Q ss_pred             CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHH
Q 016681           53 IRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKR--CSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIA  130 (384)
Q Consensus        53 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  130 (384)
                      +.+.+......++..+....+++.+..++-+.....  ...-..+..++++.|...|..+.++.+++.=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            344567777778888888888888888888877652  122244556889999999999999999998888999999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 016681          131 YSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY  176 (384)
Q Consensus       131 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (384)
                      ++.++..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999988887776666777777777666665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.31  E-value=0.00011  Score=53.71  Aligned_cols=117  Identities=18%  Similarity=0.118  Sum_probs=64.7

Q ss_pred             cCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChHH
Q 016681          246 CGNAKQANGMLTLALDKGFSPN--EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL--PAYTSLISSLCQCGKLEE  321 (384)
Q Consensus       246 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~  321 (384)
                      .++...+...++.+.+....-.  ....-.+...+...|++++|...|+.+......|+.  .....+...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            5666666666666665432210  122223445556667777777777776665422211  133345566666777777


Q ss_pred             HHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHH
Q 016681          322 ADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEM  364 (384)
Q Consensus       322 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  364 (384)
                      |...++......  .....+......+.+.|++++|...|+..
T Consensus       104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            777775543322  23345556666677777777777776653

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.29  E-value=2.5e-05  Score=66.49  Aligned_cols=124  Identities=15%  Similarity=0.149  Sum_probs=98.9

Q ss_pred             CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhh
Q 016681          158 GFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG--LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSA  235 (384)
Q Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  235 (384)
                      +.+.+......+++.+....+.+.+..++.+.....  ...-..|..++++.|.+.|..+.++.++..=...|+.||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            455577788888888888888888998888887652  212235567899999999999999999998888999999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 016681          236 FNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE  281 (384)
Q Consensus       236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  281 (384)
                      ++.+|..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999998888776666767766666666554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.28  E-value=1.6e-06  Score=45.43  Aligned_cols=33  Identities=21%  Similarity=0.397  Sum_probs=23.6

Q ss_pred             hhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCC
Q 016681           24 ISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYP   56 (384)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   56 (384)
                      .+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777776665

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.18  E-value=6.4e-05  Score=50.13  Aligned_cols=74  Identities=18%  Similarity=0.321  Sum_probs=38.1

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 016681          137 AKVKMRNLESALVVYEEMLKRGF-SANSFVYTTFIGAYCEYG--------KIEEANCLMQEMENAGLKPYDETFNLLIEG  207 (384)
Q Consensus       137 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  207 (384)
                      .+...+++.....+|+.+++.|+ .|+..+|+.++.+..+..        +.-..+.+|++|...+++|+..+|+.++..
T Consensus        34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~  113 (120)
T PF08579_consen   34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS  113 (120)
T ss_pred             HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence            33334555555555555555554 445555555554444332        223445556666666666666666666655


Q ss_pred             HHh
Q 016681          208 CAK  210 (384)
Q Consensus       208 ~~~  210 (384)
                      +.+
T Consensus       114 Llk  116 (120)
T PF08579_consen  114 LLK  116 (120)
T ss_pred             HHH
Confidence            543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.14  E-value=9.4e-05  Score=49.43  Aligned_cols=17  Identities=12%  Similarity=0.128  Sum_probs=6.3

Q ss_pred             HHHhhcchHHHHHHHHH
Q 016681          102 RIIQEERIEEGMVLLKR  118 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~  118 (384)
                      .+...+++++|.+.++.
T Consensus        43 ~~~~~~~~~~a~~~~~~   59 (100)
T cd00189          43 AYYKLGKYEEALEDYEK   59 (100)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.12  E-value=0.00011  Score=49.10  Aligned_cols=76  Identities=18%  Similarity=0.316  Sum_probs=42.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 016681          240 IRRLCECGNAKQANGMLTLALDKGF-SPNEITYSHLIGGYAKEG--------EIQEVLKLYYEMEYKSISPTLPAYTSLI  310 (384)
Q Consensus       240 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~  310 (384)
                      |..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++..        ++-+.+.+|+.|...+++|+..+|+.++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl  111 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL  111 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            3333444555555555555555555 555555655555554321        2334556666666666666666666666


Q ss_pred             HHHHh
Q 016681          311 SSLCQ  315 (384)
Q Consensus       311 ~~~~~  315 (384)
                      ..+.+
T Consensus       112 ~~Llk  116 (120)
T PF08579_consen  112 GSLLK  116 (120)
T ss_pred             HHHHH
Confidence            65543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.11  E-value=0.0001  Score=49.29  Aligned_cols=96  Identities=17%  Similarity=0.114  Sum_probs=78.0

Q ss_pred             hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681           25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII  104 (384)
Q Consensus        25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  104 (384)
                      .+..+...+...|++++|...++...+... .+...+..+...+...+++++|.+.++...... +.+...+..+...+.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~   79 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence            355677788889999999999999887633 245677788888889999999999999988765 555678888888899


Q ss_pred             hhcchHHHHHHHHHHHHc
Q 016681          105 QEERIEEGMVLLKRMLRK  122 (384)
Q Consensus       105 ~~~~~~~a~~~~~~~~~~  122 (384)
                      ..|+++.|...+....+.
T Consensus        80 ~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          80 KLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHhHHHHHHHHHHHHcc
Confidence            999999999988887654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.10  E-value=0.00027  Score=49.68  Aligned_cols=13  Identities=8%  Similarity=0.033  Sum_probs=4.7

Q ss_pred             cCChhHHHHHHHH
Q 016681           36 SDRNDLVWRIYQH   48 (384)
Q Consensus        36 ~~~~~~a~~~~~~   48 (384)
                      .|++++|.+.|+.
T Consensus        15 ~~~~~~A~~~~~~   27 (119)
T TIGR02795        15 AGDYADAIQAFQA   27 (119)
T ss_pred             cCCHHHHHHHHHH
Confidence            3333333333333

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.09  E-value=0.00017  Score=59.02  Aligned_cols=143  Identities=12%  Similarity=0.106  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 016681          164 FVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEG-CAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRR  242 (384)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  242 (384)
                      .+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ...+...|...+..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            356777777777777778888887776443 2233444443333 22245666677888777765 33366677777777


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 016681          243 LCECGNAKQANGMLTLALDKGFSPNE---ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLIS  311 (384)
Q Consensus       243 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  311 (384)
                      +...++.+.|..+|++.... +.++.   ..|...+..=.+.|+.+.+.++.+++.+.  .|+...+..++.
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~  148 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD  148 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence            77777777788777777765 22222   36777777777777777777777777765  344334343443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.07  E-value=0.00027  Score=49.65  Aligned_cols=99  Identities=10%  Similarity=0.026  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc---HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC--CCHHHHHH
Q 016681           59 ATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM---VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI--HDTIAYSL  133 (384)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~  133 (384)
                      .++..+...+.+.|++++|.+.|+.+.... +.+   ...+..+...+.+.|+++.|.+.++.+......  .....+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            455667778888999999999999998754 222   456777889999999999999999999875432  12456777


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcC
Q 016681          134 IVYAKVKMRNLESALVVYEEMLKRG  158 (384)
Q Consensus       134 ll~~~~~~~~~~~a~~~~~~~~~~~  158 (384)
                      +..++.+.|+.++|...++++.+..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHC
Confidence            8888999999999999999998874

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.05  E-value=0.00075  Score=48.71  Aligned_cols=93  Identities=8%  Similarity=-0.089  Sum_probs=61.0

Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 016681           63 TLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR  142 (384)
Q Consensus        63 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  142 (384)
                      .+...+...|++++|..+|+.+...+ +.+...|..|..++-..|++++|+..|......++. |+..+-.+..++...|
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG  117 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence            34444556677777777777766655 555666666666666777777777777776666543 5666666666777777


Q ss_pred             ChHHHHHHHHHHHHc
Q 016681          143 NLESALVVYEEMLKR  157 (384)
Q Consensus       143 ~~~~a~~~~~~~~~~  157 (384)
                      +.+.|.+.|+.....
T Consensus       118 ~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        118 NVCYAIKALKAVVRI  132 (157)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            777777777666554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.04  E-value=1.3e-05  Score=52.37  Aligned_cols=20  Identities=10%  Similarity=0.150  Sum_probs=8.1

Q ss_pred             HHHHHhhcCChhHHHHHHHH
Q 016681           29 LIHVVTKSDRNDLVWRIYQH   48 (384)
Q Consensus        29 l~~~~~~~~~~~~a~~~~~~   48 (384)
                      +..++.+.|++++|..+++.
T Consensus        31 la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen   31 LAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             HHHHHHHTTHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHH
Confidence            33444444444444444433

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.03  E-value=8.1e-06  Score=41.57  Aligned_cols=29  Identities=31%  Similarity=0.440  Sum_probs=16.2

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681          340 IYESLVGIHLEKGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       340 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  368 (384)
                      +|+.++++|++.|++++|.+++++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555544

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.03  E-value=0.0002  Score=53.93  Aligned_cols=63  Identities=5%  Similarity=-0.049  Sum_probs=27.0

Q ss_pred             hhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 016681           24 ISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYP--NEATIRTLISALCKGGQLQTYVDMLDRIHG   86 (384)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   86 (384)
                      ..|..+...+...|++++|...|+........|  ...++..+...+...|++++|+..+++...
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444444444455555555444444321111  112344444444444444444444444443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.02  E-value=0.00026  Score=58.04  Aligned_cols=131  Identities=13%  Similarity=0.095  Sum_probs=95.6

Q ss_pred             hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016681          199 ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE-CGNAKQANGMLTLALDKGFSPNEITYSHLIGG  277 (384)
Q Consensus       199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  277 (384)
                      .+|..++....+.+..+.|..+|.+..+.+. .+..+|......-.. .++.+.|..+|+...+. +..+...|...+..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            4678888888888889999999999875432 245555555555333 56677799999988876 45578888888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681          278 YAKEGEIQEVLKLYYEMEYKSISPTL---PAYTSLISSLCQCGKLEEADKYFKIMKSH  332 (384)
Q Consensus       278 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  332 (384)
                      +...++.+.|..+|++.... +.++.   ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88889999999999988766 33332   47888888888888888888888888874

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.02  E-value=1.9e-05  Score=51.49  Aligned_cols=81  Identities=16%  Similarity=0.242  Sum_probs=63.1

Q ss_pred             cCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHH
Q 016681           36 SDRNDLVWRIYQHMLENIRY-PNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMV  114 (384)
Q Consensus        36 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  114 (384)
                      .|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .+.+ +.+......+..++.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            58899999999999987542 2455566689999999999999999988 3333 3344555667899999999999999


Q ss_pred             HHHH
Q 016681          115 LLKR  118 (384)
Q Consensus       115 ~~~~  118 (384)
                      ++++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9986

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.02  E-value=0.00044  Score=49.85  Aligned_cols=97  Identities=7%  Similarity=-0.083  Sum_probs=83.2

Q ss_pred             hhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 016681           24 ISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRI  103 (384)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  103 (384)
                      ...-.+...+...|++++|..+|+.+....+. +..-|..|..++-..|++++|+..|......+ +.++..+-.+..++
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~  113 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence            34445566678899999999999999886543 66778888888999999999999999999887 67888999999999


Q ss_pred             HhhcchHHHHHHHHHHHHc
Q 016681          104 IQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus       104 ~~~~~~~~a~~~~~~~~~~  122 (384)
                      ...|+.+.|.+.|+..+..
T Consensus       114 L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        114 LACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            9999999999999988764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.00  E-value=0.001  Score=50.27  Aligned_cols=84  Identities=8%  Similarity=-0.029  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSP--MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA  137 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  137 (384)
                      .+..+...+...|++++|...|++..+....+  ....+..+...+.+.|++++|...+.+..+.... +...+..+...
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~  115 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence            34444455555555555555555554432111  1244555555555566666666666655554322 33444444445


Q ss_pred             HHhcCCh
Q 016681          138 KVKMRNL  144 (384)
Q Consensus       138 ~~~~~~~  144 (384)
                      +...|+.
T Consensus       116 ~~~~g~~  122 (172)
T PRK02603        116 YHKRGEK  122 (172)
T ss_pred             HHHcCCh
Confidence            5554443

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.97  E-value=1.2e-05  Score=40.88  Aligned_cols=29  Identities=41%  Similarity=0.720  Sum_probs=14.3

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 016681          305 AYTSLISSLCQCGKLEEADKYFKIMKSHS  333 (384)
Q Consensus       305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  333 (384)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            44455555555555555555555554443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.95  E-value=0.00056  Score=58.22  Aligned_cols=92  Identities=11%  Similarity=-0.004  Sum_probs=68.0

Q ss_pred             HHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcch
Q 016681           30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERI  109 (384)
Q Consensus        30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  109 (384)
                      ...+...|++++|++.|+++++.... +...|..+..++...|++++|+..++++.... +.+...|..+..++...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence            34566777888888888888776432 56677777777778888888888888877765 55667777777778888888


Q ss_pred             HHHHHHHHHHHHcC
Q 016681          110 EEGMVLLKRMLRKN  123 (384)
Q Consensus       110 ~~a~~~~~~~~~~~  123 (384)
                      ++|+..|++.++.+
T Consensus        87 ~eA~~~~~~al~l~  100 (356)
T PLN03088         87 QTAKAALEKGASLA  100 (356)
T ss_pred             HHHHHHHHHHHHhC
Confidence            88888888877654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.95  E-value=0.0062  Score=48.71  Aligned_cols=184  Identities=14%  Similarity=0.114  Sum_probs=104.0

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhH---HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHH
Q 016681           57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVN---TSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSL  133 (384)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  133 (384)
                      +...+-.....+...|++++|.+.|+.+.... +-+....   -.+..++.+.+++++|...+++..+..+......+..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            33333334455567888999999999888764 2222322   3456778888899999999998887654433334444


Q ss_pred             HHHHHHh--c---------------CCh---HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681          134 IVYAKVK--M---------------RNL---ESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG  193 (384)
Q Consensus       134 ll~~~~~--~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  193 (384)
                      .+.+.+.  .               .|.   ..|...|+.+.+.  -|+             +.-..+|...+..+...=
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~l  174 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDRL  174 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHHH
Confidence            4444331  1               122   2344555555544  222             222344444333332210


Q ss_pred             CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681          194 LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK--LLPSCSAFNEMIRRLCECGNAKQANGMLTLAL  260 (384)
Q Consensus       194 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  260 (384)
                         - ..--.+...|.+.|.+..|..-++.+.+.-  .+........++.+|...|..++|......+.
T Consensus       175 ---a-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        175 ---A-KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             ---H-HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence               0 111134555777777777777777777652  22234556667777777787777777665543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.94  E-value=0.00056  Score=58.20  Aligned_cols=92  Identities=11%  Similarity=0.001  Sum_probs=77.9

Q ss_pred             HHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 016681           65 ISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNL  144 (384)
Q Consensus        65 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  144 (384)
                      ...+...|+++.|++.|++..+.. +.+...|..+..++.+.|++++|+..+++++..... +...|..+..++...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence            455667899999999999998876 667888888889999999999999999999887543 677788888899999999


Q ss_pred             HHHHHHHHHHHHcC
Q 016681          145 ESALVVYEEMLKRG  158 (384)
Q Consensus       145 ~~a~~~~~~~~~~~  158 (384)
                      ++|...|+...+..
T Consensus        87 ~eA~~~~~~al~l~  100 (356)
T PLN03088         87 QTAKAALEKGASLA  100 (356)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999988763

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.89  E-value=0.0072  Score=48.36  Aligned_cols=184  Identities=8%  Similarity=0.020  Sum_probs=115.9

Q ss_pred             cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHH
Q 016681           92 MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAY---SLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTT  168 (384)
Q Consensus        92 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  168 (384)
                      +...+-.....+...|++++|.+.|+++......+ ....   -.+..++.+.++++.|...+++..+..+......+..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            33333345556677999999999999999865443 2222   3466788999999999999999988743333334444


Q ss_pred             HHHHHHh--cC---------------C---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q 016681          169 FIGAYCE--YG---------------K---IEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK  228 (384)
Q Consensus       169 l~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  228 (384)
                      .+.+.+.  .+               +   ..+|++.|+.+.+.  -|+.             .-..+|...+..+... 
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~-  173 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR-  173 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-
Confidence            4444331  11               1   23455555555543  2432             2233444333333221 


Q ss_pred             CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681          229 LLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK--GFSPNEITYSHLIGGYAKEGEIQEVLKLYYEME  295 (384)
Q Consensus       229 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  295 (384)
                         -...--.+.+-|.+.|.+..|..-++.+.+.  +.+......-.++.+|...|..++|.++...+.
T Consensus       174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence               0011124667788899999999999999875  223345567788899999999999998877654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.87  E-value=0.012  Score=52.57  Aligned_cols=16  Identities=6%  Similarity=-0.018  Sum_probs=8.7

Q ss_pred             cCChhHHHHHHHHHHh
Q 016681           36 SDRNDLVWRIYQHMLE   51 (384)
Q Consensus        36 ~~~~~~a~~~~~~~~~   51 (384)
                      -|++++|.++|-++.+
T Consensus       747 ~g~feeaek~yld~dr  762 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADR  762 (1189)
T ss_pred             hcchhHhhhhhhccch
Confidence            3555666665555443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.86  E-value=0.00016  Score=57.26  Aligned_cols=101  Identities=23%  Similarity=0.211  Sum_probs=82.1

Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 016681          242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEE  321 (384)
Q Consensus       242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  321 (384)
                      -+.+.+++.+|+..|..+++..+. |.+.|..-..+|.+.|.++.|++-.+..+... +-...+|..|..+|...|++++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence            366789999999999999987544 88888999999999999999999888887764 2345689999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCHhHHHHHHH
Q 016681          322 ADKYFKIMKSHSLVPGVDIYESLVG  346 (384)
Q Consensus       322 a~~~~~~~~~~~~~~~~~~~~~l~~  346 (384)
                      |.+.|++.++.  .|+..+|..=+.
T Consensus       168 A~~aykKaLel--dP~Ne~~K~nL~  190 (304)
T KOG0553|consen  168 AIEAYKKALEL--DPDNESYKSNLK  190 (304)
T ss_pred             HHHHHHhhhcc--CCCcHHHHHHHH
Confidence            99999988874  566666654433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.84  E-value=0.0019  Score=48.77  Aligned_cols=85  Identities=15%  Similarity=0.082  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016681          200 TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPS--CSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGG  277 (384)
Q Consensus       200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  277 (384)
                      .+..+...+...|++++|...+++..+....+.  ...+..+...+.+.|++++|...+.+..+..+. +...+..+...
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~  115 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence            344444555555666666666665554332221  234455555555555555555555555543221 33444444444


Q ss_pred             HHhcCCHH
Q 016681          278 YAKEGEIQ  285 (384)
Q Consensus       278 ~~~~~~~~  285 (384)
                      +...|+..
T Consensus       116 ~~~~g~~~  123 (172)
T PRK02603        116 YHKRGEKA  123 (172)
T ss_pred             HHHcCChH
Confidence            44444433

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.84  E-value=0.0023  Score=57.11  Aligned_cols=137  Identities=12%  Similarity=-0.030  Sum_probs=74.9

Q ss_pred             CCCChhhHHHHHHHHHhcC-----ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 016681          229 LLPSCSAFNEMIRRLCECG-----NAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE--------GEIQEVLKLYYEME  295 (384)
Q Consensus       229 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~  295 (384)
                      .+.+...|...+++.....     +...|..+|+++.+..+. ....|..+..++...        .+...+.+...+..
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            3445566666666543322     255667777777665322 233344333322211        11223333333332


Q ss_pred             hc-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681          296 YK-SISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       296 ~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  368 (384)
                      .. ....+...|..+.-.....|++++|...++++.+.+  |+...|..+...+...|+.++|.+.+++....+
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            22 122344556655555555677777777777777654  466667777777777777777777777776543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.84  E-value=0.0037  Score=55.78  Aligned_cols=63  Identities=11%  Similarity=-0.028  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q 016681          164 FVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK  228 (384)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  228 (384)
                      ..|..+.-.....|++++|...+++....+  |+...|..+...+...|+.++|...+++....+
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            344444444444455555555555555433  344555555555555555555555555554443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.81  E-value=0.00063  Score=51.56  Aligned_cols=87  Identities=21%  Similarity=0.237  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc----------------CCHHHHHHH
Q 016681          127 DTIAYSLIVYAKVK-----MRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY----------------GKIEEANCL  185 (384)
Q Consensus       127 ~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~  185 (384)
                      +..+|..+++.+.+     .|..+-....+..|.+.|+.-|..+|+.|++.+=+.                .+-+-|+++
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l  125 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL  125 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence            44445555544442     244555555555555555555555555555554321                123557777


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 016681          186 MQEMENAGLKPYDETFNLLIEGCAKAKR  213 (384)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~  213 (384)
                      +++|...|+.||..++..+++.+++.+.
T Consensus       126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  126 LEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            7777777777777777777777766553

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.81  E-value=0.0012  Score=49.68  Aligned_cols=64  Identities=14%  Similarity=0.028  Sum_probs=32.1

Q ss_pred             HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681           94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIH--DTIAYSLIVYAKVKMRNLESALVVYEEMLKR  157 (384)
Q Consensus        94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  157 (384)
                      ..|..+...+...|++++|+..|++.......+  ...++..+...+...|++++|...++.....
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344444445555555555555555554432211  1234455555555556666666655555543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.75  E-value=0.0037  Score=43.47  Aligned_cols=89  Identities=16%  Similarity=0.138  Sum_probs=40.9

Q ss_pred             HHHhhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC---cHHhHHHHHHHHHh
Q 016681           31 HVVTKSDRNDLVWRIYQHMLENIRYPN--EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSP---MVIVNTSLILRIIQ  105 (384)
Q Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~  105 (384)
                      .++-..|+.++|+.+|++....|....  ...+..+.+.+...|++++|..++++..... +.   +......+..++..
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHH
Confidence            344455555555555555555544322  2233444455555555555555555554432 11   11222222334444


Q ss_pred             hcchHHHHHHHHHHH
Q 016681          106 EERIEEGMVLLKRML  120 (384)
Q Consensus       106 ~~~~~~a~~~~~~~~  120 (384)
                      .|+.++|++.+-...
T Consensus        88 ~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   88 LGRPKEALEWLLEAL  102 (120)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            555555555544433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.74  E-value=0.0017  Score=45.14  Aligned_cols=100  Identities=18%  Similarity=0.068  Sum_probs=71.7

Q ss_pred             CcchHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLS--LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYP--NEATIRTLISALCKGGQLQT   76 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~   76 (384)
                      +|+.++|+.+|+.....|+..+  ...+-.+.+.+...|++++|..+++........+  +......+.-++...|+.++
T Consensus        14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~e   93 (120)
T PF12688_consen   14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKE   93 (120)
T ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHH
Confidence            5899999999999999987654  4456678888999999999999999998763221  22233334456678899999


Q ss_pred             HHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681           77 YVDMLDRIHGKRCSPMVIVNTSLILRII  104 (384)
Q Consensus        77 a~~~~~~~~~~~~~~~~~~~~~l~~~~~  104 (384)
                      |++.+-.....    +...|..-|..|.
T Consensus        94 Al~~~l~~la~----~~~~y~ra~~~ya  117 (120)
T PF12688_consen   94 ALEWLLEALAE----TLPRYRRAIRFYA  117 (120)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            99998776532    2335554444443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.73  E-value=0.0015  Score=49.59  Aligned_cols=87  Identities=15%  Similarity=0.181  Sum_probs=64.3

Q ss_pred             CChhhHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----------------CHHHHHH
Q 016681          231 PSCSAFNEMIRRLCEC-----GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG----------------EIQEVLK  289 (384)
Q Consensus       231 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~  289 (384)
                      .+-.+|..+++.+.+.     |..+=....+..|.+.|+.-|..+|+.|++.+=+..                +-+-|++
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~  124 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID  124 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence            4778888888888754     566667777888888898889999999998886522                2344677


Q ss_pred             HHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 016681          290 LYYEMEYKSISPTLPAYTSLISSLCQCG  317 (384)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g  317 (384)
                      ++++|...|+-||..++..+++.+.+.+
T Consensus       125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  125 LLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence            7777777777777777777777775554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.0037  Score=50.00  Aligned_cols=116  Identities=14%  Similarity=0.074  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHH
Q 016681          214 IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE---GEIQEVLKL  290 (384)
Q Consensus       214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~  290 (384)
                      .+....-++.-...++. |...|..|...|...|+.+.|..-|....+.. .+++..+..+..++...   ....++..+
T Consensus       138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            34444444444444443 56666666666666666666666666666542 23555555555554432   234456666


Q ss_pred             HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681          291 YYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH  332 (384)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  332 (384)
                      |+++.... +.|..+...|...+...|++.+|...|+.|.+.
T Consensus       216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            66666553 344555555556666666666666666666664

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.71  E-value=0.008  Score=49.54  Aligned_cols=94  Identities=16%  Similarity=0.111  Sum_probs=46.4

Q ss_pred             HHHHHHhc-CChHHHHHHHHHHHHc----CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CChh-hH
Q 016681          134 IVYAKVKM-RNLESALVVYEEMLKR----GFS-ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLK-----PYDE-TF  201 (384)
Q Consensus       134 ll~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~~  201 (384)
                      +...|... |+++.|.+.|++..+.    +.+ .-...+..+...+.+.|++++|.++|+++......     .+.. .+
T Consensus       120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~  199 (282)
T PF14938_consen  120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF  199 (282)
T ss_dssp             HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence            34445555 6677777766665442    100 01233455566677777777777777766553211     1111 12


Q ss_pred             HHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681          202 NLLIEGCAKAKRIEESLSYCEQMMSR  227 (384)
Q Consensus       202 ~~l~~~~~~~~~~~~a~~~~~~~~~~  227 (384)
                      -..+-++...||+..|...+++....
T Consensus       200 l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  200 LKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            22223444456677777777766554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.70  E-value=0.014  Score=45.37  Aligned_cols=60  Identities=8%  Similarity=0.103  Sum_probs=35.9

Q ss_pred             HHHHHHhhcCChhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681           28 TLIHVVTKSDRNDLVWRIYQHMLENIRY--PNEATIRTLISALCKGGQLQTYVDMLDRIHGK   87 (384)
Q Consensus        28 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   87 (384)
                      .....+...|++.+|.+.|+.+....+.  --....-.++.++-+.|+++.|...+++..+.
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3344556777777777777777765322  12334555666677777777777777776654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.68  E-value=0.00025  Score=43.55  Aligned_cols=56  Identities=21%  Similarity=0.206  Sum_probs=35.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          310 ISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       310 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      ...+...|++++|...|+.+++..+. +...+..+..++...|++++|...++++++
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44556667777777777776665533 556666666666677777777777766654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.0073  Score=50.36  Aligned_cols=279  Identities=11%  Similarity=-0.026  Sum_probs=149.6

Q ss_pred             HHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 016681           67 ALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLES  146 (384)
Q Consensus        67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  146 (384)
                      .+.+..++..|+..+....+.. +.+...|..-...+...+++++|.--.+.-++.... ........-.++...++..+
T Consensus        58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~  135 (486)
T KOG0550|consen   58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE  135 (486)
T ss_pred             hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence            3444555666666666666554 444555555555666666666665544443332110 11111112222222222222


Q ss_pred             HHHHHH---------------HHHHcC-CCCChHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH--H
Q 016681          147 ALVVYE---------------EMLKRG-FSANSFVYTTF-IGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIE--G  207 (384)
Q Consensus       147 a~~~~~---------------~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~  207 (384)
                      |.+.++               ...... -+|...++..+ ..++.-.|+.++|.+.--.+.+.+ ..+  .+...++  +
T Consensus       136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n--~~al~vrg~~  212 (486)
T KOG0550|consen  136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATN--AEALYVRGLC  212 (486)
T ss_pred             HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cch--hHHHHhcccc
Confidence            222221               111111 12333344333 245667788888888877776644 122  2333332  2


Q ss_pred             HHhcCchHHHHHHHHHHHhCCCCCCh-h----------hHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCCHHHHHH
Q 016681          208 CAKAKRIEESLSYCEQMMSRKLLPSC-S----------AFNEMIRRLCECGNAKQANGMLTLALDK---GFSPNEITYSH  273 (384)
Q Consensus       208 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~  273 (384)
                      +.-.++.+.+...|.+.+..++.-.. .          .+..-..-..+.|.+..|.+.+.+.+..   +..|+...|..
T Consensus       213 ~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n  292 (486)
T KOG0550|consen  213 LYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN  292 (486)
T ss_pred             cccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence            33456778888888887765432110 0          1111123355778999999999888764   34556677777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHhHHHHHHHHHhcc
Q 016681          274 LIGGYAKEGEIQEVLKLYYEMEYKSISPT-LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP-GVDIYESLVGIHLEK  351 (384)
Q Consensus       274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  351 (384)
                      ...+..+.|+..+|+.--+...+..  |. ...|..-..++...++|++|.+-++...+....+ ...++.....++-++
T Consensus       293 ra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkS  370 (486)
T KOG0550|consen  293 RALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKS  370 (486)
T ss_pred             hHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence            7778888999999998888877543  11 1222333345556788999999988887643221 234444444444433


Q ss_pred             C
Q 016681          352 G  352 (384)
Q Consensus       352 g  352 (384)
                      .
T Consensus       371 k  371 (486)
T KOG0550|consen  371 K  371 (486)
T ss_pred             h
Confidence            3

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.66  E-value=0.0012  Score=52.53  Aligned_cols=99  Identities=20%  Similarity=0.209  Sum_probs=48.3

Q ss_pred             HHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Q 016681          103 IIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEA  182 (384)
Q Consensus       103 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  182 (384)
                      +.+.+++.+|+..|.+.++.... |.+-|..-..+|.+.|.++.|.+-.+........ -..+|..|..+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence            33455555555555555554332 4444444455555555555555555444443111 233455555555555555555


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHH
Q 016681          183 NCLMQEMENAGLKPYDETFNLLI  205 (384)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~l~  205 (384)
                      ++.|++..+  +.|+..+|-.=+
T Consensus       169 ~~aykKaLe--ldP~Ne~~K~nL  189 (304)
T KOG0553|consen  169 IEAYKKALE--LDPDNESYKSNL  189 (304)
T ss_pred             HHHHHhhhc--cCCCcHHHHHHH
Confidence            555555444  234444444333

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.64  E-value=0.0028  Score=52.22  Aligned_cols=111  Identities=20%  Similarity=0.212  Sum_probs=57.0

Q ss_pred             HHHHHHHhc-CChHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----hh-
Q 016681          238 EMIRRLCEC-GNAKQANGMLTLALDK----GFSP--NEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT-----LP-  304 (384)
Q Consensus       238 ~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~-  304 (384)
                      .+...|... |++++|.+.|++..+.    + .+  -..++..+...+.+.|++++|.++|++........+     .. 
T Consensus       119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~  197 (282)
T PF14938_consen  119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE  197 (282)
T ss_dssp             HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence            334445555 6677777777665532    1 11  123455666677777888888888877765432211     11 


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCC--HhHHHHHHHHHh
Q 016681          305 AYTSLISSLCQCGKLEEADKYFKIMKSHS--LVPG--VDIYESLVGIHL  349 (384)
Q Consensus       305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~  349 (384)
                      .|-..+-++...||+..|...+++.....  +..+  ......|+.++-
T Consensus       198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~  246 (282)
T PF14938_consen  198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE  246 (282)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence            12223334555677888888887776542  2212  233445555543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.62  E-value=0.00043  Score=43.08  Aligned_cols=59  Identities=10%  Similarity=0.077  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc-chHHHHHHHHHH
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE-RIEEGMVLLKRM  119 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~  119 (384)
                      +|..+...+...|++++|+..|++..+.+ +.+...|..+..++...| ++++|++.+++.
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            33333334444444444444444433333 233333444444444443 344444444333

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.60  E-value=0.0005  Score=42.17  Aligned_cols=54  Identities=17%  Similarity=0.172  Sum_probs=24.5

Q ss_pred             HHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 016681           67 ALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLR  121 (384)
Q Consensus        67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  121 (384)
                      .+.+.|++++|...|+++.+.. +-+...+..+..++...|++++|...|+++++
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344444444444444444443 33444444444444444444444444444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.58  E-value=0.00033  Score=43.59  Aligned_cols=62  Identities=23%  Similarity=0.218  Sum_probs=33.9

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccC-CHHHHHHHHHHHHh
Q 016681          304 PAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKG-NKAKALHLCEEMVS  366 (384)
Q Consensus       304 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~  366 (384)
                      .+|..+...+...|++++|+..|++.++.++. +...|..+..++...| ++++|.+.+++.++
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            44555555555556666666666555554332 4455555555555555 45566555555543

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.56  E-value=0.00053  Score=42.51  Aligned_cols=49  Identities=16%  Similarity=0.304  Sum_probs=19.0

Q ss_pred             CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 016681           72 GQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLR  121 (384)
Q Consensus        72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  121 (384)
                      |++++|++.|+++.... |.+..++..+..++.+.|++++|.++++++..
T Consensus         5 ~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             THHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             cCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444444443332 22333333344444444444444444444333

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.56  E-value=0.00036  Score=43.27  Aligned_cols=52  Identities=19%  Similarity=0.214  Sum_probs=25.6

Q ss_pred             hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681           35 KSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK   87 (384)
Q Consensus        35 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   87 (384)
                      +.|++++|+++|+.+....+. +...+..+..++.+.|++++|.++++++...
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345555555555555544222 4444445555555555555555555555444

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.011  Score=47.41  Aligned_cols=122  Identities=15%  Similarity=-0.024  Sum_probs=89.2

Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHc
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR---NLESALVVYEEMLKR  157 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~  157 (384)
                      ++.-...+ +.|...|-.|...|...|+++.|..-|.+..+...+ +...+..+..++..+.   ...++..+|+++...
T Consensus       145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~  222 (287)
T COG4235         145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALAL  222 (287)
T ss_pred             HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence            33334444 778899999999999999999999999998876432 6666666666655433   456788899998887


Q ss_pred             CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 016681          158 GFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEG  207 (384)
Q Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  207 (384)
                      ... |+.....+...+...|++.+|...++.|.+.. +|+ ..+..++..
T Consensus       223 D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~-~~rr~~ie~  269 (287)
T COG4235         223 DPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-PAD-DPRRSLIER  269 (287)
T ss_pred             CCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCC-CchHHHHHH
Confidence            433 67777778888899999999999999998865 343 445555543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.027  Score=44.20  Aligned_cols=133  Identities=9%  Similarity=0.016  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH-----
Q 016681           95 VNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTF-----  169 (384)
Q Consensus        95 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----  169 (384)
                      +-+.++..+.-.+++.-....+++.++...+.++.....+.+.-.+.||.+.|...|+...+..-+.|..+.+.+     
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            344556666666777777777777777665556667777777777777777777777766554333333333332     


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q 016681          170 IGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK  228 (384)
Q Consensus       170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  228 (384)
                      ...|.-++++..|...+.++...+ ..|....|.-.-+..-.|+...|.+.++.+.+..
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            233444556666666666665543 2233333332222333466666666666666653

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.49  E-value=0.0043  Score=51.67  Aligned_cols=133  Identities=14%  Similarity=0.033  Sum_probs=81.6

Q ss_pred             hhHHHHHHHHHhcCchHHHHHHHHHHHh----CCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHh----cCC-CCCH
Q 016681          199 ETFNLLIEGCAKAKRIEESLSYCEQMMS----RKLL-PSCSAFNEMIRRLCECGNAKQANGMLTLALD----KGF-SPNE  268 (384)
Q Consensus       199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~  268 (384)
                      ..|..+-+.|.-.|+++.|+...+.-..    -|-. .....+..+..++.-.|+++.|.+.++....    .|- ....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            3455566666667788888766654322    1211 1234567777778888888888887765432    221 1233


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681          269 ITYSHLIGGYAKEGEIQEVLKLYYEMEYK-----SISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  331 (384)
                      .+.-+|...|.-..++++|+..+.+-...     ...-....+.+|..++...|..++|+.+.+.-.+
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            45556777777777788888777653211     1122345677788888888888888777665443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.45  E-value=0.057  Score=45.96  Aligned_cols=355  Identities=14%  Similarity=0.159  Sum_probs=181.9

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchh------hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHccC
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLI------SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISA--LCKGG   72 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~   72 (384)
                      .|++.+|.++|.++.+.- ..++.      .-+.++++|...+ .+.....+..+.+..  |. ..|-.+..+  +-+.+
T Consensus        19 q~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~--~~-s~~l~LF~~L~~Y~~k   93 (549)
T PF07079_consen   19 QKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQF--GK-SAYLPLFKALVAYKQK   93 (549)
T ss_pred             HhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhc--CC-chHHHHHHHHHHHHhh
Confidence            367889999999886652 22222      2345666665443 444444444444431  21 222222222  34567


Q ss_pred             ChHHHHHHHHHHHhC--CCC------------CcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC----CCCCHHHHHHH
Q 016681           73 QLQTYVDMLDRIHGK--RCS------------PMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN----MIHDTIAYSLI  134 (384)
Q Consensus        73 ~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l  134 (384)
                      .+..|.+.+......  +..            +|...-+..+.++...|++.++..+++++...=    ...+..+|+.+
T Consensus        94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~  173 (549)
T PF07079_consen   94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA  173 (549)
T ss_pred             hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence            888888877766543  211            122233456677888999999998888877643    33677788775


Q ss_pred             HHHHHhc--------CCh-------HHHHHHHHHHHHc------CCCCChHHHHHHH-----------------------
Q 016681          135 VYAKVKM--------RNL-------ESALVVYEEMLKR------GFSANSFVYTTFI-----------------------  170 (384)
Q Consensus       135 l~~~~~~--------~~~-------~~a~~~~~~~~~~------~~~~~~~~~~~l~-----------------------  170 (384)
                      +-.+.++        ...       +.+.-+..++...      .+.|.......++                       
T Consensus       174 vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~  253 (549)
T PF07079_consen  174 VLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN  253 (549)
T ss_pred             HHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence            4443321        111       1122112222111      1112111111111                       


Q ss_pred             ---------------HHHHhcCCHHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC
Q 016681          171 ---------------GAYCEYGKIEEANCLMQEMENAGLKP----YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP  231 (384)
Q Consensus       171 ---------------~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  231 (384)
                                     ..+.+  +.+++..+-+.+....+.+    =..+|..++....+.++...|.+.+.-+...++..
T Consensus       254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~  331 (549)
T PF07079_consen  254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRI  331 (549)
T ss_pred             hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence                           11111  3333333333332211100    11456666666667777777766666554432221


Q ss_pred             C--------hhhHHH-----------------------------------HHH---HHHhcCC-hHHHHHHHHHHHhcCC
Q 016681          232 S--------CSAFNE-----------------------------------MIR---RLCECGN-AKQANGMLTLALDKGF  264 (384)
Q Consensus       232 ~--------~~~~~~-----------------------------------l~~---~~~~~~~-~~~a~~~~~~~~~~~~  264 (384)
                      .        ..++..                                   ++.   -+-+.|. -++|..+++.+.+-. 
T Consensus       332 svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-  410 (549)
T PF07079_consen  332 SVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-  410 (549)
T ss_pred             hhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-
Confidence            1        001100                                   110   1112233 566666666666532 


Q ss_pred             CCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhcCCCCChhh----HHHHHH--HHHhcCChHHHHHHHHHHhh
Q 016681          265 SPNEITYSHLI----GGYAK---EGEIQEVLKLYYEMEYKSISPTLPA----YTSLIS--SLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       265 ~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~--~~~~~g~~~~a~~~~~~~~~  331 (384)
                      +-|..+-|.+.    .+|.+   ...+.+...+-+-+.+.|++|-...    -|.|..  -+...|++.++.-.-.-+.+
T Consensus       411 ~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~  490 (549)
T PF07079_consen  411 NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK  490 (549)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            12333333322    22221   2334445555555566677664332    333333  24567888888776666655


Q ss_pred             CCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681          332 HSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV  365 (384)
Q Consensus       332 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  365 (384)
                        +.|++.+|..+.-++....++++|..++..+.
T Consensus       491 --iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  491 --IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             --hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence              67899999999999999999999999998763

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.45  E-value=0.026  Score=41.87  Aligned_cols=127  Identities=17%  Similarity=0.137  Sum_probs=69.3

Q ss_pred             CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHHHHH
Q 016681           90 SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS-ANSFVYTT  168 (384)
Q Consensus        90 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~  168 (384)
                      .|++...-.|..++...|+..+|...|.+...--..-|......+.++....+++..|...++++.+.... -++.+.-.
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            45555555666666666666666666666655444445555666666666666666666666666554210 12223344


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHH
Q 016681          169 FIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESL  218 (384)
Q Consensus       169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  218 (384)
                      +.+.+...|++.+|+..|+.....  -|+...-......+.+.|+.+++.
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~  213 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN  213 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence            556666666666666666666553  243333333333344555444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.42  E-value=0.037  Score=43.07  Aligned_cols=56  Identities=18%  Similarity=0.230  Sum_probs=26.0

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681          136 YAKVKMRNLESALVVYEEMLKRGFS--ANSFVYTTFIGAYCEYGKIEEANCLMQEMEN  191 (384)
Q Consensus       136 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  191 (384)
                      ..+...|++.+|.+.|+.+......  --....-.++.++.+.|+++.|...++...+
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444555555555555555543111  1122233344555555666666555555544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.38  E-value=0.029  Score=41.01  Aligned_cols=54  Identities=30%  Similarity=0.359  Sum_probs=21.7

Q ss_pred             HHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016681          100 ILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEM  154 (384)
Q Consensus       100 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  154 (384)
                      +..+...|++++|..++..+....+- +...|..+|.++...|+...|.++|+.+
T Consensus        69 ~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   69 AEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            33333444444444444444443322 3444444444444444444444444443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.11  Score=47.06  Aligned_cols=322  Identities=15%  Similarity=0.123  Sum_probs=183.8

Q ss_pred             hcCCCCchhhHHH-----HHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh--HHHHHHHHHHHhCC
Q 016681           16 QRGFSLSLISFNT-----LIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQL--QTYVDMLDRIHGKR   88 (384)
Q Consensus        16 ~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~   88 (384)
                      .-|++.+..-|..     +++-+...+.+..|+++-..+-..-.+ +...|.....-+.+..+.  +++.+.+++=.+..
T Consensus       425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~  503 (829)
T KOG2280|consen  425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK  503 (829)
T ss_pred             ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence            3466666555544     456677778888898888777443222 256666666666665322  22333333222221


Q ss_pred             CCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC------
Q 016681           89 CSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI----HDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG------  158 (384)
Q Consensus        89 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------  158 (384)
                      . ..-..|..+.+-....|+++.|..+++.=...+..    .+..-+...+.-+.+.|+.+....++-.+.++-      
T Consensus       504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~  582 (829)
T KOG2280|consen  504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF  582 (829)
T ss_pred             C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence            1 33456677777777889998888877643222111    122234455666777788887777776665431      


Q ss_pred             -----CCCChHHHHHHHH--------HHHhcCCHHHHHHHH--HHHH----HcCCCCChhhHHHHHHHHHhcCch-----
Q 016681          159 -----FSANSFVYTTFIG--------AYCEYGKIEEANCLM--QEME----NAGLKPYDETFNLLIEGCAKAKRI-----  214 (384)
Q Consensus       159 -----~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~--~~~~----~~~~~~~~~~~~~l~~~~~~~~~~-----  214 (384)
                           .+.....|.-+++        .+.+.++-..+..-|  +...    ..+..|   ........+.+....     
T Consensus       583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~---~lk~~a~~~a~sk~~s~e~k  659 (829)
T KOG2280|consen  583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIP---ALKTAANAFAKSKEKSFEAK  659 (829)
T ss_pred             HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccch---hHHHHHHHHhhhhhhhhHHH
Confidence                 1111122222221        011111211111111  1100    012222   233334444444331     


Q ss_pred             -----HHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 016681          215 -----EESLSYCEQMMSR-KLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVL  288 (384)
Q Consensus       215 -----~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  288 (384)
                           .+-+++.+.+... +.....-+.+--+.-+...|+..+|.++-.+..    -||...|-.-+.+++..+++++.+
T Consensus       660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe  735 (829)
T KOG2280|consen  660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE  735 (829)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence                 1222223333222 323344455666677788899999998877665    468999999999999999999887


Q ss_pred             HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHH
Q 016681          289 KLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLC  361 (384)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  361 (384)
                      ++-+..+      ++.-|..++.+|.+.|+.++|.+++-+....         .....+|.+.|++.+|.++-
T Consensus       736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence            7665443      2567888999999999999999998765431         14667788888888877654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.33  E-value=0.041  Score=48.94  Aligned_cols=37  Identities=5%  Similarity=0.076  Sum_probs=23.2

Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016681          114 VLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEE  153 (384)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  153 (384)
                      .-++++.++|-.|+...   +...++-.|.+.+|.++|.+
T Consensus       621 ~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  621 SELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             HHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence            34556667777676644   33455667777777777743

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.30  E-value=0.0039  Score=45.67  Aligned_cols=72  Identities=15%  Similarity=0.161  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHH-----cCCCCCHHHHH
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLR-----KNMIHDTIAYS  132 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  132 (384)
                      +...++..+...|+++.|..+.+.+.... |-+...|..+|.++...|+...|.+.|+++.+     .|+.|+..+-.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            44556667778999999999999999887 78899999999999999999999999998754     48888876643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.29  E-value=0.0073  Score=42.46  Aligned_cols=52  Identities=13%  Similarity=0.173  Sum_probs=40.3

Q ss_pred             CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh-CCCCCCHhHHHHHHHHHh
Q 016681          298 SISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS-HSLVPGVDIYESLVGIHL  349 (384)
Q Consensus       298 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~  349 (384)
                      ...|+..+..+++.+|+..|++..|.++++...+ .++..+..+|..|+....
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4567788888888888888888888888887765 567777788888876644

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.27  E-value=0.0066  Score=50.65  Aligned_cols=134  Identities=16%  Similarity=0.067  Sum_probs=90.5

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC-CCCh
Q 016681          234 SAFNEMIRRLCECGNAKQANGMLTLAL----DKGFS-PNEITYSHLIGGYAKEGEIQEVLKLYYEMEY----KSI-SPTL  303 (384)
Q Consensus       234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~  303 (384)
                      ..|..+...|.-.|+++.|+...+.-.    +.|-+ .....+..+..++.-.|+++.|.+.|+....    .|- ....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            355666666667789999887665432    22221 1345677888899999999999999886532    221 1122


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHhh----C-CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          304 PAYTSLISSLCQCGKLEEADKYFKIMKS----H-SLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       304 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      ...-+|...|.-..++++|+.++.+-..    . +..-....+.+|..+|...|..++|+.+.+.-++.
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            3344577777777889999988875432    1 11124677889999999999999999888776543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.27  E-value=0.13  Score=46.32  Aligned_cols=122  Identities=10%  Similarity=-0.078  Sum_probs=56.9

Q ss_pred             CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH----------HHHccCChHHHHHHHHHHHhCCC
Q 016681           20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLIS----------ALCKGGQLQTYVDMLDRIHGKRC   89 (384)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~a~~~~~~~~~~~~   89 (384)
                      .|.+..|..+.......-.++.|...|-+....   |.......|-.          .-+--|++++|.++|-.+-+.+ 
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence            366677777776666666666666666554332   11111111111          1112356666666666554433 


Q ss_pred             CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016681           90 SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK-NMIHDTIAYSLIVYAKVKMRNLESALVVYEE  153 (384)
Q Consensus        90 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  153 (384)
                              ..+..+.+.|++-.+.++++.--.. +-..-..+|+.+...++....|++|.++|..
T Consensus       765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~  821 (1189)
T KOG2041|consen  765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY  821 (1189)
T ss_pred             --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    2334445555555544444321000 0000123455555555555555555555543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.26  E-value=0.0095  Score=48.11  Aligned_cols=85  Identities=19%  Similarity=0.184  Sum_probs=35.2

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CCHhHHHHHHHHHhccCC
Q 016681          280 KEGEIQEVLKLYYEMEYKSISPTL----PAYTSLISSLCQCGKLEEADKYFKIMKSHSLV--PGVDIYESLVGIHLEKGN  353 (384)
Q Consensus       280 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~  353 (384)
                      +.|++++|...|+.+.+..  |+.    .++-.+...|...|++++|...|+.+.+.-+.  .....+..+...+...|+
T Consensus       155 ~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~  232 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD  232 (263)
T ss_pred             hcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence            3344444444444444432  221    23333444444445555555555444432110  112223333344444455


Q ss_pred             HHHHHHHHHHHHh
Q 016681          354 KAKALHLCEEMVS  366 (384)
Q Consensus       354 ~~~a~~~~~~~~~  366 (384)
                      .++|..+++++++
T Consensus       233 ~~~A~~~~~~vi~  245 (263)
T PRK10803        233 TAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555554443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.22  E-value=0.098  Score=43.73  Aligned_cols=286  Identities=16%  Similarity=0.131  Sum_probs=182.7

Q ss_pred             ccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH--HhhcchHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCC
Q 016681           70 KGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRI--IQEERIEEGMVLLKRMLRKNMIHDTIAYSL----IVYAKVKMRN  143 (384)
Q Consensus        70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~  143 (384)
                      -.|+-..|.++-.+..+. +..|....-.++.+.  .-.|+++.|.+-|+.|...     +.+-..    |.-..-+.|+
T Consensus        96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~Ga  169 (531)
T COG3898          96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGA  169 (531)
T ss_pred             ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhccc
Confidence            357777887777665432 234444444454433  3579999999999999863     333222    2223346789


Q ss_pred             hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChh--hHHHHHHHHHh---cCchHHH
Q 016681          144 LESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG-LKPYDE--TFNLLIEGCAK---AKRIEES  217 (384)
Q Consensus       144 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~---~~~~~~a  217 (384)
                      .+.|..+-+..-..-.. -...+...+...+..|+|+.|+++.+.-.... +.++..  .-..|+.+-..   ..+...|
T Consensus       170 reaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A  248 (531)
T COG3898         170 REAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA  248 (531)
T ss_pred             HHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence            99999888877665322 45677889999999999999999998766543 333332  22233322211   1245555


Q ss_pred             HHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016681          218 LSYCEQMMSRKLLPSCS-AFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEY  296 (384)
Q Consensus       218 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  296 (384)
                      ...-.+..+.  .|+.. .-.....++.+.|+..++-.+++.+-+..+.|+  .+...+  ..+.|+.  +..-+++..+
T Consensus       249 r~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY~--~ar~gdt--a~dRlkRa~~  320 (531)
T COG3898         249 RDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLYV--RARSGDT--ALDRLKRAKK  320 (531)
T ss_pred             HHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHHH--HhcCCCc--HHHHHHHHHH
Confidence            5555554443  34432 223345788999999999999999998855554  333322  3455553  3333333221


Q ss_pred             c-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHH-hccCCHHHHHHHHHHHHhCCCCCC
Q 016681          297 K-SISP-TLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIH-LEKGNKAKALHLCEEMVSEGLKPS  372 (384)
Q Consensus       297 ~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~  372 (384)
                      . .++| +....-.+.++-...|++..|..--+....  ..|....|..|.+.- ...|+-.++..++.+.++.--.|+
T Consensus       321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa  397 (531)
T COG3898         321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA  397 (531)
T ss_pred             HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence            1 1233 455666677888889999998887776665  457778888887775 456999999999999988765564

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.21  E-value=0.016  Score=46.86  Aligned_cols=99  Identities=8%  Similarity=0.036  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHH
Q 016681          130 AYSLIVYAKVKMRNLESALVVYEEMLKRGFSA--NSFVYTTFIGAYCEYGKIEEANCLMQEMENAG--LKPYDETFNLLI  205 (384)
Q Consensus       130 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~  205 (384)
                      .|...+....+.|++++|...|+.+.+.-...  ....+-.+..+|...|++++|...|+.+.+.-  -+.....+-.+.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            34444433444566666666666665542111  02344455566666666666666666665431  111123333344


Q ss_pred             HHHHhcCchHHHHHHHHHHHhCC
Q 016681          206 EGCAKAKRIEESLSYCEQMMSRK  228 (384)
Q Consensus       206 ~~~~~~~~~~~a~~~~~~~~~~~  228 (384)
                      ..+...|+.++|..+|+.+.+..
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC
Confidence            45556666666666666666553

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.19  E-value=0.12  Score=44.14  Aligned_cols=129  Identities=16%  Similarity=0.187  Sum_probs=95.1

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH-HHHHH
Q 016681          234 SAFNEMIRRLCECGNAKQANGMLTLALDKG-FSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAY-TSLIS  311 (384)
Q Consensus       234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~  311 (384)
                      .+|...+....+....+.|..+|-++.+.+ ..+++..+++++..++ .|+...|..+|+--...  -||...| .-.+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~  474 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL  474 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence            456667777778888899999999998887 5678888999998776 57788889998865544  2444444 45566


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          312 SLCQCGKLEEADKYFKIMKSHSLVPG--VDIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       312 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      -+.+.++-+.|..+|+..+++ +..+  ..+|..+|..-..-|+...+..+-++|.+
T Consensus       475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            677888889999999866542 1112  46788888888888888777776666654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.19  E-value=0.0023  Score=40.25  Aligned_cols=55  Identities=16%  Similarity=0.088  Sum_probs=27.9

Q ss_pred             HHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681           67 ALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus        67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  122 (384)
                      .+.+.++++.|.++++.+...+ |.+...+.....++.+.|++++|.+.++...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3444555555555555555444 344445555555555555555555555555543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.17  E-value=0.057  Score=40.13  Aligned_cols=132  Identities=14%  Similarity=0.143  Sum_probs=95.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhh
Q 016681          124 MIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG---LKPYDET  200 (384)
Q Consensus       124 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~  200 (384)
                      ..|+...-..|..++.+.|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+..   -.|  .+
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p--d~  162 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP--DG  162 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC--Cc
Confidence            3466666777888899999999999999888776566678888888888889999999999998887653   233  44


Q ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016681          201 FNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLA  259 (384)
Q Consensus       201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  259 (384)
                      .-.+...+...|.+.+|...|+.....-+.|....+  ....+.+.|+.+++..-+..+
T Consensus       163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHHHHH
Confidence            566677888889999999999988876544443333  344456677666555444333

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.15  E-value=0.0023  Score=40.25  Aligned_cols=55  Identities=16%  Similarity=0.114  Sum_probs=29.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681          277 GYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH  332 (384)
Q Consensus       277 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  332 (384)
                      .|.+.+++++|.++++.+...+ +.+...+.....++.+.|++++|.+.|+...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4445555555555555555543 234444444555555555555555555555544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.12  Score=43.53  Aligned_cols=259  Identities=9%  Similarity=-0.033  Sum_probs=148.5

Q ss_pred             HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681           31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE  110 (384)
Q Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  110 (384)
                      ..+.+..++..|+..+...++..+. +..-|..-...+...|++++|.--.+.-.+.. +-........-.++...++..
T Consensus        57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i  134 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI  134 (486)
T ss_pred             chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence            4455666778888888888776442 45555555555666666766655554443332 111122222223333333333


Q ss_pred             HHHHHHH---------------HHHHcCC-CCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 016681          111 EGMVLLK---------------RMLRKNM-IHDTIAYSLI-VYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAY  173 (384)
Q Consensus       111 ~a~~~~~---------------~~~~~~~-~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  173 (384)
                      +|.+.++               ....... +|...++..+ ..++.-.++.++|.++--..++.... +....-.--.++
T Consensus       135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~  213 (486)
T KOG0550|consen  135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCL  213 (486)
T ss_pred             HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhccccc
Confidence            3333222               2211111 1223333333 24566778888888887777665221 222222222344


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhH-------------HHHHHHHHhcCchHHHHHHHHHHHhCC---CCCChhhHH
Q 016681          174 CEYGKIEEANCLMQEMENAGLKPYDETF-------------NLLIEGCAKAKRIEESLSYCEQMMSRK---LLPSCSAFN  237 (384)
Q Consensus       174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~  237 (384)
                      .-.++.+.+...|++....+  |+...-             ..-.+-..+.|.+..|.+.|.+.+..+   ..++...|.
T Consensus       214 yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~  291 (486)
T KOG0550|consen  214 YYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG  291 (486)
T ss_pred             ccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence            45677888888888877644  433221             111233457788999999999887753   445566777


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH-H--HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016681          238 EMIRRLCECGNAKQANGMLTLALDKGFSPNEI-T--YSHLIGGYAKEGEIQEVLKLYYEMEYKS  298 (384)
Q Consensus       238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~  298 (384)
                      ....+..+.|+..+|+.--+...+.    |.. .  +..-..++.-.+++++|.+-++...+..
T Consensus       292 nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  292 NRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            7777888899999999888877764    332 2  2222344556788899998888876653

>PRK15331 chaperone protein SicA; Provisional

Probab=97.14  E-value=0.026  Score=41.17  Aligned_cols=90  Identities=12%  Similarity=0.007  Sum_probs=65.3

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 016681          240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKL  319 (384)
Q Consensus       240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  319 (384)
                      ..-+...|++++|..+|.-+.-.++. +..-|..|..++-..+++++|...|......+. -|+..+-....++...|+.
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence            33455778888888888887765543 566677777777778888888888887655542 3444455567788888888


Q ss_pred             HHHHHHHHHHhh
Q 016681          320 EEADKYFKIMKS  331 (384)
Q Consensus       320 ~~a~~~~~~~~~  331 (384)
                      +.|+..|+...+
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            888888887776

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.08  E-value=0.14  Score=42.86  Aligned_cols=106  Identities=25%  Similarity=0.303  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 016681          235 AFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLC  314 (384)
Q Consensus       235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  314 (384)
                      +.+..+.-+...|+...|.++-.+..    -|+..-|...+.+++..++|++..++-..   .   -++.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence            44455666667777777776655542    35777788888888888888777665432   1   23467777888888


Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHH
Q 016681          315 QCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHL  360 (384)
Q Consensus       315 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  360 (384)
                      +.|+..+|..++.++     .     +..-+..|.+.|++.+|.+.
T Consensus       249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence            888888877777662     1     13345556666777666554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.00  E-value=0.0024  Score=40.85  Aligned_cols=61  Identities=20%  Similarity=0.284  Sum_probs=33.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHhh----CCCC-CC-HhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681          305 AYTSLISSLCQCGKLEEADKYFKIMKS----HSLV-PG-VDIYESLVGIHLEKGNKAKALHLCEEMV  365 (384)
Q Consensus       305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~  365 (384)
                      +++.+...|...|++++|+..|++..+    .|.. |+ ..++..+...+...|++++|.+.+++..
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455556666666666666666665543    1111 11 3445566666666666666666666654

...

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.00  E-value=0.018  Score=40.49  Aligned_cols=99  Identities=14%  Similarity=0.158  Sum_probs=64.5

Q ss_pred             ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016681          197 YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIG  276 (384)
Q Consensus       197 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  276 (384)
                      |..++..++.++++.|+.+....+++..-.-++.....           .+.         .-......|+..+..+++.
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~-----------~~~---------~~~~spl~Pt~~lL~AIv~   60 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKK-----------EGD---------YPPSSPLYPTSRLLIAIVH   60 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccc-----------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence            34566677777777777777666665543222111000           000         1112345688999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHh
Q 016681          277 GYAKEGEIQEVLKLYYEMEYK-SISPTLPAYTSLISSLCQ  315 (384)
Q Consensus       277 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~  315 (384)
                      +|+..+++..|+++.+...+. +++.+..+|..|++-...
T Consensus        61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v  100 (126)
T PF12921_consen   61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV  100 (126)
T ss_pred             HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            999999999999999987654 677778888888875443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.99  E-value=0.18  Score=42.75  Aligned_cols=31  Identities=10%  Similarity=0.042  Sum_probs=22.8

Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681          232 SCSAFNEMIRRLCECGNAKQANGMLTLALDK  262 (384)
Q Consensus       232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  262 (384)
                      +--.+..++.+..-.|+.++|.+..+.|.+.
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            4445566777777788888888888887765

>PRK15331 chaperone protein SicA; Provisional

Probab=96.95  E-value=0.021  Score=41.69  Aligned_cols=87  Identities=10%  Similarity=-0.030  Sum_probs=55.3

Q ss_pred             HHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 016681           68 LCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESA  147 (384)
Q Consensus        68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  147 (384)
                      +-..|++++|..+|+-+...+ +-+...|..|..++-..+++++|+..|......+.. |+..+-....++...|+.+.|
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A  124 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA  124 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence            345677777777777766555 455666666666666777777777777765544332 334444455666777777777


Q ss_pred             HHHHHHHHH
Q 016681          148 LVVYEEMLK  156 (384)
Q Consensus       148 ~~~~~~~~~  156 (384)
                      ...|+...+
T Consensus       125 ~~~f~~a~~  133 (165)
T PRK15331        125 RQCFELVNE  133 (165)
T ss_pred             HHHHHHHHh
Confidence            777766665

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.85  E-value=0.24  Score=41.99  Aligned_cols=168  Identities=10%  Similarity=0.023  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHh---cCchHHHHHHHHHHHhCCCCCChhhH
Q 016681          163 SFVYTTFIGAYCEYGKIEEANCLMQEMENAG---LKPYDETFNLLIEGCAK---AKRIEESLSYCEQMMSRKLLPSCSAF  236 (384)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~  236 (384)
                      ..+...++-+|....+++...++.+.+....   +.-+...--...-++.+   .|+.++|+.++..+......+++.++
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            3344455556777778888888888877642   11111222233344445   67788888888776655556677777


Q ss_pred             HHHHHHHHhc---------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----HHHHHHHH---HH-HHhcCC
Q 016681          237 NEMIRRLCEC---------GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGE----IQEVLKLY---YE-MEYKSI  299 (384)
Q Consensus       237 ~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~---~~-~~~~~~  299 (384)
                      ..+.+.|-..         ...++|...|.+.-+.  .|+..+--.++..+...|.    ..+..++-   .. +.+.|.
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~  298 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS  298 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence            7777665321         1244555555544433  2333222222222222222    11222222   11 112222


Q ss_pred             C---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681          300 S---PTLPAYTSLISSLCQCGKLEEADKYFKIMKSH  332 (384)
Q Consensus       300 ~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  332 (384)
                      .   .+.-.+..++.+..-.|++++|.+..++|.+.
T Consensus       299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            1   22223345555666666666666666666654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.84  E-value=0.33  Score=43.54  Aligned_cols=87  Identities=10%  Similarity=0.062  Sum_probs=43.4

Q ss_pred             hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH---------
Q 016681          199 ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEI---------  269 (384)
Q Consensus       199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------  269 (384)
                      .+...+...+.+...+.-|.++|..|-..         ..+++.....+++++|..+-+...+.  .||+.         
T Consensus       748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE  816 (1081)
T KOG1538|consen  748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAE  816 (1081)
T ss_pred             hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhh
Confidence            33444444444555566666666655321         23455556667777776665544332  22211         


Q ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016681          270 --TYSHLIGGYAKEGEIQEVLKLYYEMEY  296 (384)
Q Consensus       270 --~~~~l~~~~~~~~~~~~a~~~~~~~~~  296 (384)
                        -|...-.+|.+.|+-.+|.++++++..
T Consensus       817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence              122223345555666666666655543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.77  E-value=0.065  Score=46.95  Aligned_cols=157  Identities=14%  Similarity=0.147  Sum_probs=84.6

Q ss_pred             HHhhcCChhHHHHHHH--HHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcch
Q 016681           32 VVTKSDRNDLVWRIYQ--HMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERI  109 (384)
Q Consensus        32 ~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  109 (384)
                      ...-.++++++.+...  .+.. .+  +....+.++..+-+.|..+.|+++...         +.   .-.....+.|++
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L  334 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNL  334 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred             HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCH
Confidence            3445666777655553  1111 11  244566677777777777777766322         21   233445567777


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681          110 EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEM  189 (384)
Q Consensus       110 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  189 (384)
                      +.|.++.++.      .+...|..|.....+.|+++-|++.|.+..         -+..|+-.|.-.|+.+...++.+..
T Consensus       335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a  399 (443)
T PF04053_consen  335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIA  399 (443)
T ss_dssp             HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHH
Confidence            7776654332      256677777777777777777777776543         2455666677777777777777666


Q ss_pred             HHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 016681          190 ENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQM  224 (384)
Q Consensus       190 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  224 (384)
                      ...|-      ++....++.-.|+.++..+++.+.
T Consensus       400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  400 EERGD------INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            66653      333334444456666666665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.73  E-value=0.28  Score=41.16  Aligned_cols=284  Identities=12%  Similarity=0.042  Sum_probs=177.0

Q ss_pred             cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHH
Q 016681           36 SDRNDLVWRIYQHMLENIRYPNEATIRTLISA--LCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGM  113 (384)
Q Consensus        36 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  113 (384)
                      .|+-..|.++-.+..+. +..|..-+..++.+  -.-.|+.+.|.+-|+.|.... +....-...|.-..-+.|..+.|.
T Consensus        97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr  174 (531)
T COG3898          97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAAR  174 (531)
T ss_pred             cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHH
Confidence            46777777766554432 23344444444443  344699999999999998632 111222233333445678888888


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHH--HHHHHHHH--H-hcCCHHHHHHHHH
Q 016681          114 VLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG-FSANSFV--YTTFIGAY--C-EYGKIEEANCLMQ  187 (384)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~--~-~~~~~~~a~~~~~  187 (384)
                      .+-++.-..-.. -...+...+...+..|+++.|+++.+.-++.. +.++..-  -..|+.+-  . -..+...|...-.
T Consensus       175 ~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~  253 (531)
T COG3898         175 HYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL  253 (531)
T ss_pred             HHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            888877665433 45677888999999999999999998876542 3333221  12222221  1 1224555555554


Q ss_pred             HHHHcCCCCChh-hHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCC
Q 016681          188 EMENAGLKPYDE-TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK-GFS  265 (384)
Q Consensus       188 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~  265 (384)
                      +..+  +.|+.. .-..-..++.+.|+..++-.+++.+.+..+.|+  .+.  +-...+.|+  .+..-+++..+. ..+
T Consensus       254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L~slk  325 (531)
T COG3898         254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKLESLK  325 (531)
T ss_pred             HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHHHhcC
Confidence            4443  445532 233445778899999999999999999876555  222  222334444  344444433321 122


Q ss_pred             C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHhhC
Q 016681          266 P-NEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQ-CGKLEEADKYFKIMKSH  332 (384)
Q Consensus       266 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~  332 (384)
                      | +..+...+..+-...|++..|..--+.....  .|....|..|.+.-.. .|+-.++...+-+..+.
T Consensus       326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         326 PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            3 5566667777777889998887776666543  6888888877775544 59999999999888764

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.71  E-value=0.0079  Score=38.39  Aligned_cols=22  Identities=27%  Similarity=0.298  Sum_probs=9.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHH
Q 016681          167 TTFIGAYCEYGKIEEANCLMQE  188 (384)
Q Consensus       167 ~~l~~~~~~~~~~~~a~~~~~~  188 (384)
                      ..+..++...|++++|++.+++
T Consensus        50 ~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen   50 NNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            3333444444444444444433

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.67  E-value=0.13  Score=44.22  Aligned_cols=64  Identities=16%  Similarity=0.133  Sum_probs=29.3

Q ss_pred             HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016681           93 VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDT--IAYSLIVYAKVKMRNLESALVVYEEMLK  156 (384)
Q Consensus        93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~  156 (384)
                      ...++.+..+|.+.|++++|+..|++.++.......  .+|..+..+|.+.|+.++|.+.+++..+
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444444455555555555555555554443222110  2344444455555555555555554444

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.60  E-value=0.41  Score=42.70  Aligned_cols=178  Identities=14%  Similarity=0.119  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc------HHhHHHHHHHHHh----hcchHH
Q 016681           42 VWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM------VIVNTSLILRIIQ----EERIEE  111 (384)
Q Consensus        42 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~----~~~~~~  111 (384)
                      ..-+|.-+..- ++|   .+..++....-.|+-+.+++.+.+..+.+--..      .-.|+..+..++.    ....+.
T Consensus       176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~  251 (468)
T PF10300_consen  176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE  251 (468)
T ss_pred             HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence            34455555543 222   344556666667787888887777655331111      1233333333332    345678


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcC---CCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 016681          112 GMVLLKRMLRKNMIHDTIAYSL-IVYAKVKMRNLESALVVYEEMLKRG---FSANSFVYTTFIGAYCEYGKIEEANCLMQ  187 (384)
Q Consensus       112 a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  187 (384)
                      |.++++.+.+.-  |+...|.. -.+.+...|++++|.+.|+......   .+.....+--+.-.+.-..+|++|.+.|.
T Consensus       252 a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~  329 (468)
T PF10300_consen  252 AEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL  329 (468)
T ss_pred             HHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence            888888887763  45544443 3355667788888888888655321   11123334445666777888888888888


Q ss_pred             HHHHcCCCCChhhHHHHHHH-HHhcCch-------HHHHHHHHHHHh
Q 016681          188 EMENAGLKPYDETFNLLIEG-CAKAKRI-------EESLSYCEQMMS  226 (384)
Q Consensus       188 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~-------~~a~~~~~~~~~  226 (384)
                      .+.+.. ..+..+|.-+..+ +...++.       ++|.++|.+...
T Consensus       330 ~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  330 RLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            888765 3344444433333 3345555       778888877654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.067  Score=44.89  Aligned_cols=98  Identities=13%  Similarity=0.069  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 016681          268 EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGI  347 (384)
Q Consensus       268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  347 (384)
                      ..+++.+..++.+.+++.+|+...++.+..+ ++|....-.-.+++...|+++.|+..|+++.+..+. |...-..++..
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l  334 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKL  334 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence            3467778888889999999999999988876 567777777788899999999999999999986443 44445555555


Q ss_pred             HhccCCH-HHHHHHHHHHHhC
Q 016681          348 HLEKGNK-AKALHLCEEMVSE  367 (384)
Q Consensus       348 ~~~~g~~-~~a~~~~~~~~~~  367 (384)
                      -.+.... +...++|..|...
T Consensus       335 ~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            4444443 3457788888754

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.34  Score=39.11  Aligned_cols=153  Identities=14%  Similarity=0.095  Sum_probs=107.3

Q ss_pred             HHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcch
Q 016681           30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERI  109 (384)
Q Consensus        30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  109 (384)
                      .......|++.+|..+|+........ +......++..+...|+.+.|..++..+....-.........-+..+.+....
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~  219 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT  219 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence            34567889999999999998886443 45677788899999999999999999987553222222223345566666666


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 016681          110 EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR--GFSANSFVYTTFIGAYCEYGKIEEANCLM  186 (384)
Q Consensus       110 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  186 (384)
                      .+...+-.++-.. . -|...-..+...+...|+.+.|.+.+-.+...  |.. |...-..++..+...|.-+.+...+
T Consensus       220 ~~~~~l~~~~aad-P-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~~~  295 (304)
T COG3118         220 PEIQDLQRRLAAD-P-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVLAY  295 (304)
T ss_pred             CCHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHHHH
Confidence            6666666665543 1 16666677788888999999999887777554  444 6777888888888888554444333

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.47  E-value=0.32  Score=38.54  Aligned_cols=137  Identities=12%  Similarity=0.015  Sum_probs=100.6

Q ss_pred             hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHH---
Q 016681          199 ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLI---  275 (384)
Q Consensus       199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---  275 (384)
                      ...+.++..+.-.+.+.-....++++++...+.++.....+.+.-.+.||.+.|...|++..+..-..|..+.+.++   
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            34556667777778888888999999998877788899999999999999999999999877643334444444433   


Q ss_pred             --HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 016681          276 --GGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP  336 (384)
Q Consensus       276 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  336 (384)
                        ..|.-.+++..|...+.+..... +.|+...|.-.-+..-.|+...|.+.++.|....+.|
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence              34445678888888888887664 3445555555555556789999999999998865443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.47  E-value=0.15  Score=43.87  Aligned_cols=65  Identities=11%  Similarity=0.004  Sum_probs=50.3

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH---HhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681           57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV---IVNTSLILRIIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  122 (384)
                      +...++.+..+|...|++++|+..|++..+.+ +.+.   .+|..+..+|...|+.++|++.+++.++.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46678888888888888888888888877764 2233   35788888888888888888888888775

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.40  E-value=0.19  Score=35.12  Aligned_cols=63  Identities=16%  Similarity=0.209  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 016681          271 YSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSL  334 (384)
Q Consensus       271 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  334 (384)
                      ....+..+...|+-+...+++..+.+.+ .+++...-.+..+|.+.|+..++.++++++.+.|+
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            3444444555555555555555554322 34455555555555555555555555555555543

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.39  E-value=0.23  Score=41.17  Aligned_cols=23  Identities=13%  Similarity=0.046  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHH
Q 016681          270 TYSHLIGGYAKEGEIQEVLKLYY  292 (384)
Q Consensus       270 ~~~~l~~~~~~~~~~~~a~~~~~  292 (384)
                      .+-.|...|.+..++++|.-+..
T Consensus       164 vcv~Lgslf~~l~D~~Kal~f~~  186 (518)
T KOG1941|consen  164 VCVSLGSLFAQLKDYEKALFFPC  186 (518)
T ss_pred             hhhhHHHHHHHHHhhhHHhhhhH
Confidence            34444444444444444444333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.35  E-value=0.16  Score=44.52  Aligned_cols=157  Identities=13%  Similarity=0.060  Sum_probs=90.8

Q ss_pred             HHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 016681           68 LCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESA  147 (384)
Q Consensus        68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  147 (384)
                      ..-.++++++.++.+.-.-.. .-+....+.++..+-+.|..+.|+++...-.            .-.....+.|+++.|
T Consensus       271 av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A  337 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA  337 (443)
T ss_dssp             HHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred             HHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence            344677777666664111000 1124456777777788888888877544321            123455677888888


Q ss_pred             HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681          148 LVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSR  227 (384)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  227 (384)
                      .++.++      ..+...|..|.....+.|+++-|++.|++..+         +..++-.|.-.|+.+...++.+.....
T Consensus       338 ~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  338 LEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            765433      22667888888888888888888888876432         555666677778877777777766665


Q ss_pred             CCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 016681          228 KLLPSCSAFNEMIRRLCECGNAKQANGMLTL  258 (384)
Q Consensus       228 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  258 (384)
                      |      -++....++.-.|+.++..+++..
T Consensus       403 ~------~~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  403 G------DINIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4      245555555666777777666643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.26  E-value=0.52  Score=38.83  Aligned_cols=164  Identities=11%  Similarity=0.061  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHhcCch---HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016681          200 TFNLLIEGCAKAKRI---EESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIG  276 (384)
Q Consensus       200 ~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  276 (384)
                      +...++.+|...+..   ++|..+++.+...... .+..+..-++.+.+.++.+.+.+++.+|...- ......+..++.
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~  163 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH  163 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence            455566666665543   3455555566444322 34455555666666777888888888877652 212334444444


Q ss_pred             HHH--hcCCHHHHHHHHHHHHhcCCCCChh-hHH-HHHHH---HHhcCC------hHHHHHHHHHHhh-CCCCCCHhHHH
Q 016681          277 GYA--KEGEIQEVLKLYYEMEYKSISPTLP-AYT-SLISS---LCQCGK------LEEADKYFKIMKS-HSLVPGVDIYE  342 (384)
Q Consensus       277 ~~~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~~-~l~~~---~~~~g~------~~~a~~~~~~~~~-~~~~~~~~~~~  342 (384)
                      .+.  .......+...+..+....+.|... ... .++..   ..+.++      .+....++....+ .+.+.+..+-.
T Consensus       164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~  243 (278)
T PF08631_consen  164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS  243 (278)
T ss_pred             HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            442  1233445666666655444444443 111 11111   112111      3344444443322 22233333322


Q ss_pred             H---H----HHHHhccCCHHHHHHHHHHHH
Q 016681          343 S---L----VGIHLEKGNKAKALHLCEEMV  365 (384)
Q Consensus       343 ~---l----~~~~~~~g~~~~a~~~~~~~~  365 (384)
                      .   +    ...+.+.+++++|.++|+-..
T Consensus       244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  244 AIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            2   2    334567899999999988544

It is also involved in sporulation [].

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.24  E-value=0.58  Score=39.19  Aligned_cols=110  Identities=15%  Similarity=0.131  Sum_probs=85.1

Q ss_pred             hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016681          199 ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGY  278 (384)
Q Consensus       199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  278 (384)
                      .+.+..+.-+...|+...|.++-.+.    -.|+...|..-+.+++..+++++...+...      .-++.-|..++.+|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~  247 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC  247 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence            34555566777888888887776665    236889999999999999999988776432      12457899999999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 016681          279 AKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKI  328 (384)
Q Consensus       279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  328 (384)
                      .+.|+..+|..+..+          ..+..-+..|.+.|++.+|.+.--+
T Consensus       248 ~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  248 LKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999988876          1225577888999999999776543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.17  Score=42.59  Aligned_cols=138  Identities=12%  Similarity=0.069  Sum_probs=71.4

Q ss_pred             HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681           31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE  110 (384)
Q Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  110 (384)
                      ..+.+.|++..|..-|++.+..=.             +.+.-+.++... ..       ..-..+++.+.-++.+.+++.
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~-------------~~~~~~~ee~~~-~~-------~~k~~~~lNlA~c~lKl~~~~  274 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLE-------------YRRSFDEEEQKK-AE-------ALKLACHLNLAACYLKLKEYK  274 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhh-------------ccccCCHHHHHH-HH-------HHHHHHhhHHHHHHHhhhhHH
Confidence            567888999999988888765300             000001111111 11       111334455555666666666


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH-HHHHHHHHH
Q 016681          111 EGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE-EANCLMQEM  189 (384)
Q Consensus       111 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~  189 (384)
                      .|++..+..+..+.. |....-.-..++...|+++.|...|+++.+..+. |...-+.++.+-.+..... ...++|..|
T Consensus       275 ~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  275 EAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANM  352 (397)
T ss_pred             HHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666665432 5555555556666666666666666666654221 3333333433333333332 234555555


Q ss_pred             HH
Q 016681          190 EN  191 (384)
Q Consensus       190 ~~  191 (384)
                      ..
T Consensus       353 F~  354 (397)
T KOG0543|consen  353 FA  354 (397)
T ss_pred             hh
Confidence            43

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.23  E-value=0.53  Score=41.99  Aligned_cols=164  Identities=15%  Similarity=0.081  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHH
Q 016681          200 TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSC------SAFNEMIRRLCE----CGNAKQANGMLTLALDKGFSPNEI  269 (384)
Q Consensus       200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~  269 (384)
                      .+..+++...=.|+-+.+++.+.+..+.+-.-.+      -.|..++..++.    ..+.+.|.+++..+.+.  -|+..
T Consensus       190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~  267 (468)
T PF10300_consen  190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA  267 (468)
T ss_pred             HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence            4566666666778888888888876654211121      123334433333    35678899999998876  46666


Q ss_pred             HHHHHH-HHHHhcCCHHHHHHHHHHHHhcC--C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHH
Q 016681          270 TYSHLI-GGYAKEGEIQEVLKLYYEMEYKS--I-SPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLV  345 (384)
Q Consensus       270 ~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  345 (384)
                      .|...- +.+...|++++|.+.|++.....  . ......+.-+...+.-..+|++|...|..+.+..- .+..+|..+.
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~  346 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLA  346 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHH
Confidence            665443 45557899999999999765321  1 12334556677778889999999999999988532 2444454443


Q ss_pred             HH-HhccCCH-------HHHHHHHHHHHh
Q 016681          346 GI-HLEKGNK-------AKALHLCEEMVS  366 (384)
Q Consensus       346 ~~-~~~~g~~-------~~a~~~~~~~~~  366 (384)
                      .+ +...|+.       ++|.+++.++..
T Consensus       347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  347 AACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            33 5567777       888888887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.23  E-value=0.68  Score=39.83  Aligned_cols=127  Identities=15%  Similarity=0.144  Sum_probs=79.4

Q ss_pred             HhcCc-hHHHHHHHHHHHhCCCCCChhhHHHH----HHHHHh---cCChHHHHHHHHHHHhcCCCCCH----HHHHHHHH
Q 016681          209 AKAKR-IEESLSYCEQMMSRKLLPSCSAFNEM----IRRLCE---CGNAKQANGMLTLALDKGFSPNE----ITYSHLIG  276 (384)
Q Consensus       209 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~  276 (384)
                      -+.|. -++|+.+++.+.+-..- |...-|.+    =.+|.+   ...+.+-..+-+-+.+.|++|-.    ..-|.+.+
T Consensus       390 W~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD  468 (549)
T PF07079_consen  390 WEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD  468 (549)
T ss_pred             HhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence            34444 67788888777664211 32222222    222322   23455555555666677877643    33444433


Q ss_pred             H--HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHH
Q 016681          277 G--YAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYES  343 (384)
Q Consensus       277 ~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  343 (384)
                      +  +...|++.++.-.-.-+.+  +.|++.+|..+.-++....++++|..++..+     +|+..++++
T Consensus       469 AEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds  530 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS  530 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence            3  3467888888765555544  5799999999999999999999999999864     456666654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.20  E-value=0.21  Score=40.92  Aligned_cols=154  Identities=14%  Similarity=0.002  Sum_probs=92.4

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhC-C--CCCChhhHHHHHHHHHhcCChHH
Q 016681          175 EYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSR-K--LLPSCSAFNEMIRRLCECGNAKQ  251 (384)
Q Consensus       175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~~  251 (384)
                      ..|+..+|-..++++.+. .+.|...+...=.+|.-.|+...-...++++... +  .+..........-++...|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            456677777777777654 3555566666667777778777777777776654 2  21112233334445567788888


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 016681          252 ANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK---SISPTLPAYTSLISSLCQCGKLEEADKYFKI  328 (384)
Q Consensus       252 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  328 (384)
                      |++.-++..+.+. .|...-.+....+.-.+++.++.++..+-...   +.-.-...|....-.+...+.++.|.++|++
T Consensus       194 AEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  194 AEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            8888777776543 25555566666666777777777766554322   1111122344444455566778888888865


Q ss_pred             Hh
Q 016681          329 MK  330 (384)
Q Consensus       329 ~~  330 (384)
                      -+
T Consensus       273 ei  274 (491)
T KOG2610|consen  273 EI  274 (491)
T ss_pred             HH
Confidence            43

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.20  E-value=0.13  Score=40.96  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 016681          180 EEANCLMQEMENAGLKPYDETFNLLIEGCAKAKR  213 (384)
Q Consensus       180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  213 (384)
                      +=++.++++|...|+.||..+-..+++++.+.+-
T Consensus       140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            3467888888888888888888888888877664

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.17  E-value=1  Score=41.33  Aligned_cols=305  Identities=11%  Similarity=0.049  Sum_probs=167.1

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCCh--hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRN--DLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVD   79 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   79 (384)
                      +.|..|+++-.++...-... ...|......+.+..+.  +++.+..++=..... -...+|..+.+..-..|+++.|..
T Consensus       451 ~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~k  528 (829)
T KOG2280|consen  451 HLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARK  528 (829)
T ss_pred             chhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHH
Confidence            45777888888775442222 55666666666665432  223333332222212 244567777777778899999988


Q ss_pred             HHHHHHhCCC----CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC-----------CCCHHHHHHHHH--------
Q 016681           80 MLDRIHGKRC----SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNM-----------IHDTIAYSLIVY--------  136 (384)
Q Consensus        80 ~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~ll~--------  136 (384)
                      +++.=...+.    -.+..-+...+.-...+|+.+....++-.+.+.-.           +.....|.-+++        
T Consensus       529 Lle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~  608 (829)
T KOG2280|consen  529 LLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLY  608 (829)
T ss_pred             HHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhh
Confidence            8775322210    01222333445556667777777666666654311           001111111111        


Q ss_pred             HHHhcCChHHHHHHH--HHHHHc-CCCCChHHHHHHHHHHHhcCCHHHH----------HHHHHHHHH-cCCCCChhhHH
Q 016681          137 AKVKMRNLESALVVY--EEMLKR-GFSANSFVYTTFIGAYCEYGKIEEA----------NCLMQEMEN-AGLKPYDETFN  202 (384)
Q Consensus       137 ~~~~~~~~~~a~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a----------~~~~~~~~~-~~~~~~~~~~~  202 (384)
                      .+...++-..+...|  +..... .+.+-........+.+.+.....-.          +.+.+.+.. .|..-..-+.+
T Consensus       609 d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~  688 (829)
T KOG2280|consen  609 DFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLH  688 (829)
T ss_pred             hhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHH
Confidence            011111111111111  110000 0111222233344455544432111          122222222 12223334555


Q ss_pred             HHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 016681          203 LLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG  282 (384)
Q Consensus       203 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  282 (384)
                      --+.-+...|+..+|.++-.+..    .||-..|-.=+.+++..+++++-+++-+...      ++.-|.-++.+|.+.|
T Consensus       689 dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~  758 (829)
T KOG2280|consen  689 DTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG  758 (829)
T ss_pred             HHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence            55666777888888888766653    3688889888999999999988776654433      3566788999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 016681          283 EIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFK  327 (384)
Q Consensus       283 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  327 (384)
                      +.++|.+.+.+....         .-...+|.+.|++.+|.++--
T Consensus       759 n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  759 NKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             cHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence            999999988664321         157788999999999877654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.13  E-value=0.019  Score=31.72  Aligned_cols=38  Identities=13%  Similarity=0.246  Sum_probs=19.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHH
Q 016681          305 AYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYES  343 (384)
Q Consensus       305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  343 (384)
                      ++..+...|.+.|++++|.++|+++++..+. |...|..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~   40 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRA   40 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHH
Confidence            3444555555666666666666665554433 3444433

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.01  E-value=0.37  Score=34.85  Aligned_cols=128  Identities=17%  Similarity=0.217  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016681          200 TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYA  279 (384)
Q Consensus       200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  279 (384)
                      ....++..+.+.+.+.....+++.+...+. .+...++.++..|++.+. .+....+..   .   .+......+++.|.
T Consensus         9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~   80 (140)
T smart00299        9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCE   80 (140)
T ss_pred             CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHH
Confidence            355677778777888899999998888764 577788888888887643 334444432   1   23444556778888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhc
Q 016681          280 KEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQC-GKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLE  350 (384)
Q Consensus       280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  350 (384)
                      +.+.++++..++.++..         +...+..+... ++++.|.+++++-      .+...|..++..+..
T Consensus        81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~  137 (140)
T smart00299       81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD  137 (140)
T ss_pred             HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence            88888888888876532         22233333333 7788888877751      266678877776654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.00  E-value=0.17  Score=40.26  Aligned_cols=96  Identities=23%  Similarity=0.187  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CC-CHhHHHHHH
Q 016681          270 TYSHLIGGYAKEGEIQEVLKLYYEMEYKSI--SPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSL-VP-GVDIYESLV  345 (384)
Q Consensus       270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~  345 (384)
                      .|+.-+..+ +.|++..|..-|....+...  .-....+-.|..++...|+++.|..+|..+.+.-+ .| -+..+-.|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            455555443 45556667666666665521  01122344466666777777777777766655211 11 235555666


Q ss_pred             HHHhccCCHHHHHHHHHHHHh
Q 016681          346 GIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       346 ~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      ....+.|+.++|..+|+++.+
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHH
Confidence            666677777777777777655

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=0.66  Score=37.57  Aligned_cols=121  Identities=7%  Similarity=-0.023  Sum_probs=53.2

Q ss_pred             HHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 016681           68 LCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESA  147 (384)
Q Consensus        68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  147 (384)
                      ....|++.+|...|+...... +.+....-.+..+|...|+.+.|..++..+....-.........-+..+.+.....+.
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~  222 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI  222 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence            344555555555555555443 3334444555555556666666655555544332111111111222333333333333


Q ss_pred             HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681          148 LVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMEN  191 (384)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  191 (384)
                      ..+-...-..  +-|...-..+...+...|+.+.|.+.+-.+.+
T Consensus       223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3333332221  11333444445555555555555555444433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.96  E-value=0.32  Score=39.97  Aligned_cols=153  Identities=10%  Similarity=-0.010  Sum_probs=93.3

Q ss_pred             HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH----HhHHHHHHHHHhhcc
Q 016681           33 VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV----IVNTSLILRIIQEER  108 (384)
Q Consensus        33 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~  108 (384)
                      +.-+|++.+|-..++++++. .+-|...+...=+++.-.|+.+.-...++++...- .++.    .....+.-++...|-
T Consensus       113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence            34567777777777777765 33366666666677777787777777777776441 2332    333334445567788


Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 016681          109 IEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR---GFSANSFVYTTFIGAYCEYGKIEEANCL  185 (384)
Q Consensus       109 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~  185 (384)
                      +++|++.-++..+-+.. |...-......+-..++..++.+...+-...   +--.-..-|-...-.+...+.++.|+++
T Consensus       191 y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  191 YDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             chhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            88888877777765433 6666666667777777777777766543221   1111112233333445556778888888


Q ss_pred             HHH
Q 016681          186 MQE  188 (384)
Q Consensus       186 ~~~  188 (384)
                      |+.
T Consensus       270 yD~  272 (491)
T KOG2610|consen  270 YDR  272 (491)
T ss_pred             HHH
Confidence            754

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.95  E-value=0.14  Score=40.86  Aligned_cols=34  Identities=15%  Similarity=0.254  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 016681          285 QEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGK  318 (384)
Q Consensus       285 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  318 (384)
                      +-+++++++|...|+-||..+-..|++++.+.+-
T Consensus       140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            3477888888888888888888888888877664

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.85  E-value=0.033  Score=30.76  Aligned_cols=22  Identities=23%  Similarity=0.152  Sum_probs=8.5

Q ss_pred             HHHHHccCChHHHHHHHHHHHh
Q 016681           65 ISALCKGGQLQTYVDMLDRIHG   86 (384)
Q Consensus        65 ~~~~~~~~~~~~a~~~~~~~~~   86 (384)
                      ...+.+.|++++|.++|+++.+
T Consensus         8 a~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    8 ARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            3333333333333333333333

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.85  E-value=0.84  Score=37.61  Aligned_cols=120  Identities=15%  Similarity=0.073  Sum_probs=53.7

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHH-------HhhcC-ChhHHHHHHHHHHhc--------CCCCCH-----HH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHV-------VTKSD-RNDLVWRIYQHMLEN--------IRYPNE-----AT   60 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~-~~~~a~~~~~~~~~~--------~~~~~~-----~~   60 (384)
                      |+++.|..++.+........++.....+.+.       ..+.+ +++.|..++++..+.        ...|+.     .+
T Consensus         7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~i   86 (278)
T PF08631_consen    7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSI   86 (278)
T ss_pred             CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHH
Confidence            6777888888877653212222222222222       22333 666666655554432        111221     23


Q ss_pred             HHHHHHHHHccCChH---HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681           61 IRTLISALCKGGQLQ---TYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus        61 ~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  122 (384)
                      +..++.++...+..+   +|.++++.+.... +..+.++..-+..+.+.++.+.+.+.+.+|+..
T Consensus        87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   87 LRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            444445554444332   2333444443222 222333333444444455555555555555554

It is also involved in sporulation [].

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.82  E-value=0.23  Score=45.85  Aligned_cols=16  Identities=19%  Similarity=0.154  Sum_probs=9.4

Q ss_pred             cCCHHHHHHHHHHHHh
Q 016681          281 EGEIQEVLKLYYEMEY  296 (384)
Q Consensus       281 ~~~~~~a~~~~~~~~~  296 (384)
                      .+++.....+++.|.+
T Consensus       574 ~~~~~~~~~Fl~~~~E  589 (933)
T KOG2114|consen  574 SQNYQILLNFLESMSE  589 (933)
T ss_pred             ccCHHHHHHHHHHHHh
Confidence            3456666666665654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.80  E-value=0.28  Score=34.18  Aligned_cols=91  Identities=16%  Similarity=0.053  Sum_probs=58.5

Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH---HHHHHHHhcCC
Q 016681          242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYT---SLISSLCQCGK  318 (384)
Q Consensus       242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~  318 (384)
                      ++...|+.+.|++.|.+....-+ -....||.-..++.-.|+.++|++-+++..+..-.-+.....   .-...|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            45667778888887777776532 366777777777777777787777777776653222222222   22234556677


Q ss_pred             hHHHHHHHHHHhhCC
Q 016681          319 LEEADKYFKIMKSHS  333 (384)
Q Consensus       319 ~~~a~~~~~~~~~~~  333 (384)
                      -+.|..-|+..-+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            777777777777665

>PRK11906 transcriptional regulator; Provisional

Probab=95.80  E-value=1.2  Score=38.85  Aligned_cols=163  Identities=10%  Similarity=0.048  Sum_probs=101.2

Q ss_pred             hhH--HHHHHHHHhc-----CchHHHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 016681          199 ETF--NLLIEGCAKA-----KRIEESLSYCEQMMSR-KLLPS-CSAFNEMIRRLCE---------CGNAKQANGMLTLAL  260 (384)
Q Consensus       199 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~  260 (384)
                      ..|  ..++.+....     ...+.|..+|.+.... ...|+ ...|..+..++..         ..+..+|.++.+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            345  5555554432     2456788888888722 23333 3444444333322         223456667777777


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHh
Q 016681          261 DKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP-GVD  339 (384)
Q Consensus       261 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~  339 (384)
                      +.+.. |......+..+....++++.|...|++....+ +....+|......+..+|+.++|.+.+++..+..+.- -..
T Consensus       332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~  409 (458)
T PRK11906        332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV  409 (458)
T ss_pred             hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence            77544 77777777777777888999999999988765 2334455556666777899999999999877654321 223


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHH
Q 016681          340 IYESLVGIHLEKGNKAKALHLCEEM  364 (384)
Q Consensus       340 ~~~~l~~~~~~~g~~~~a~~~~~~~  364 (384)
                      +....+..|+.++ .++|.+++-+-
T Consensus       410 ~~~~~~~~~~~~~-~~~~~~~~~~~  433 (458)
T PRK11906        410 VIKECVDMYVPNP-LKNNIKLYYKE  433 (458)
T ss_pred             HHHHHHHHHcCCc-hhhhHHHHhhc
Confidence            3344455666655 56777776543

>PRK11906 transcriptional regulator; Provisional

Probab=95.68  E-value=1.3  Score=38.55  Aligned_cols=82  Identities=11%  Similarity=0.054  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016681           74 LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEE  153 (384)
Q Consensus        74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  153 (384)
                      ..+|.+.-++..+.+ +.|......+..+..-.++++.|...|++....++. ...+|......+.-.|+.++|.+.+++
T Consensus       320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344555555555555 555555555555555555566666666665554322 333444444444455666666666665


Q ss_pred             HHHc
Q 016681          154 MLKR  157 (384)
Q Consensus       154 ~~~~  157 (384)
                      ..+.
T Consensus       398 alrL  401 (458)
T PRK11906        398 SLQL  401 (458)
T ss_pred             Hhcc
Confidence            4443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.67  E-value=1.2  Score=38.31  Aligned_cols=132  Identities=14%  Similarity=0.142  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681          163 SFVYTTFIGAYCEYGKIEEANCLMQEMENAG-LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR  241 (384)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  241 (384)
                      ..+|...++...+..-.+.|..+|-+..+.+ +.++...+++++..++ .|+...|..+|+.-...-.. +..-....+.
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~  474 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLL  474 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHH
Confidence            3456666777777777788888888887777 5566677777777665 46677777777765554222 2333345566


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016681          242 RLCECGNAKQANGMLTLALDKGFSPN--EITYSHLIGGYAKEGEIQEVLKLYYEMEYK  297 (384)
Q Consensus       242 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  297 (384)
                      -+...++-+.|..+|+...++ +..+  ...|..+|..-..-|+...+..+-++|.+.
T Consensus       475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            667777888888888755432 1112  456777777777777777777666666554

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.66  E-value=0.46  Score=33.26  Aligned_cols=64  Identities=27%  Similarity=0.282  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016681          130 AYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL  194 (384)
Q Consensus       130 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  194 (384)
                      .....+..+.+.|.-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus        88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            3444455555666666666666655542 234555555666666666666666666666665553

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.66  E-value=0.35  Score=38.57  Aligned_cols=59  Identities=14%  Similarity=0.158  Sum_probs=25.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681          169 FIGAYCEYGKIEEANCLMQEMENAG-LKP-YDETFNLLIEGCAKAKRIEESLSYCEQMMSR  227 (384)
Q Consensus       169 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  227 (384)
                      |..++...|++++|..+|..+.+.- -.| -...+--+..+..+.|+.++|..+|+++.+.
T Consensus       184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4444555555555555554444321 011 1133333444444455555555555555444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.65  E-value=0.8  Score=35.96  Aligned_cols=203  Identities=13%  Similarity=0.075  Sum_probs=86.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 016681          131 YSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAK  210 (384)
Q Consensus       131 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  210 (384)
                      |.....+|....++++|...+.+..+. ...+...|.       ....++.|.-+.+++.+..  --...|......|..
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY~E  103 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELYVE  103 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence            444445566666777777666555421 111222221       1223344444444444321  111334444555556


Q ss_pred             cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc---CC--CCCHHHHHHHHHHHHhcCCHH
Q 016681          211 AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK---GF--SPNEITYSHLIGGYAKEGEIQ  285 (384)
Q Consensus       211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~~  285 (384)
                      .|.++.|-..+++.-+.                ....+++.|++++++....   +-  ..-...+...-+.+.+...++
T Consensus       104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~  167 (308)
T KOG1585|consen  104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT  167 (308)
T ss_pred             hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence            66555555544443221                1122334444444333211   00  001123333444455555555


Q ss_pred             HHHHHHHHHHhc----CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCCHhHHHHHHHHHhccCCHHHH
Q 016681          286 EVLKLYYEMEYK----SISPT-LPAYTSLISSLCQCGKLEEADKYFKIMKSHS---LVPGVDIYESLVGIHLEKGNKAKA  357 (384)
Q Consensus       286 ~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a  357 (384)
                      +|-..+.+-...    .-.++ -..|-..|-.+....++..|...++.-.+.+   -.-+..+...|+.+| ..|+.+++
T Consensus       168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~  246 (308)
T KOG1585|consen  168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI  246 (308)
T ss_pred             HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence            554444332111    00111 1223444444555566777777766643321   112445566666555 44555555


Q ss_pred             HHH
Q 016681          358 LHL  360 (384)
Q Consensus       358 ~~~  360 (384)
                      ..+
T Consensus       247 ~kv  249 (308)
T KOG1585|consen  247 KKV  249 (308)
T ss_pred             HHH
Confidence            444

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.58  E-value=0.44  Score=33.26  Aligned_cols=91  Identities=14%  Similarity=0.065  Sum_probs=49.1

Q ss_pred             HHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcCC
Q 016681           67 ALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSL---IVYAKVKMRN  143 (384)
Q Consensus        67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~  143 (384)
                      +++..|+++.|++.|.+....- +.+...||.-..++.-.|+.++|++-+++..+..-.-.......   -...|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            4556667777777776665543 45566666666666666666666666666555321112222211   1223444555


Q ss_pred             hHHHHHHHHHHHHcC
Q 016681          144 LESALVVYEEMLKRG  158 (384)
Q Consensus       144 ~~~a~~~~~~~~~~~  158 (384)
                      .+.|..=|+...+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            566655555554443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.48  E-value=0.63  Score=33.62  Aligned_cols=126  Identities=9%  Similarity=0.097  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 016681          166 YTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE  245 (384)
Q Consensus       166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  245 (384)
                      ...++..+...+.+.....+++.+...+ ..+...++.++..|++.+ ..+....+..   .   .+......+++.|.+
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~   81 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence            4456666666777777777777777665 355567777777777653 3333444432   1   233344556666777


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 016681          246 CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE-GEIQEVLKLYYEMEYKSISPTLPAYTSLISSLC  314 (384)
Q Consensus       246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  314 (384)
                      .+-++++..++..+..         +...+..+... ++++.|.+++.+-      .+...|..++..+.
T Consensus        82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l  136 (140)
T smart00299       82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL  136 (140)
T ss_pred             cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence            7777777666655432         11222333333 6666666666541      24456665555544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.41  E-value=1.7  Score=38.12  Aligned_cols=163  Identities=12%  Similarity=0.113  Sum_probs=85.4

Q ss_pred             HHHHHHhhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhh
Q 016681           28 TLIHVVTKSDRNDLVWRIYQHMLENIRYPNEA-TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQE  106 (384)
Q Consensus        28 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  106 (384)
                      .+|.-.-+.++++.-++.-.+.++.  .||.. .|..|..  -......++.+++++..+.+    ...+.       +.
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAg----E~~lg-------~s  237 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLAE--EEASTIVEAEELLRQAVKAG----EASLG-------KS  237 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHH----HHhhc-------hh
Confidence            3444445555666555555555552  34432 2322221  22345677888887766543    11110       00


Q ss_pred             cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHHHHHHH
Q 016681          107 ERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS-ANSFVYTTFIGAYCEYGKIEEANCL  185 (384)
Q Consensus       107 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~  185 (384)
                      ......-..++....+...|-..+-..+..++-+.|+.++|.+.+.++.+.... -+......|+.++...+.+.++..+
T Consensus       238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l  317 (539)
T PF04184_consen  238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL  317 (539)
T ss_pred             hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence            000000011122222222223333345666777888888888888888764222 2344667788888888888888888


Q ss_pred             HHHHHHcCCCCCh-hhHHHHH
Q 016681          186 MQEMENAGLKPYD-ETFNLLI  205 (384)
Q Consensus       186 ~~~~~~~~~~~~~-~~~~~l~  205 (384)
                      +.+-.+...+.+. ..|+..+
T Consensus       318 L~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  318 LAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             HHHhccccCCchHHHHHHHHH
Confidence            8887554332222 3455544

The molecular function of this protein is uncertain.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=95.38  E-value=0.78  Score=34.05  Aligned_cols=133  Identities=14%  Similarity=0.149  Sum_probs=59.1

Q ss_pred             HHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 016681           80 MLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGF  159 (384)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  159 (384)
                      .++.+.+.+++|+...+..++..+.+.|++..    +..+.+.++-+|.......+-.+.  +....+.++--+|..+  
T Consensus        16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR--   87 (167)
T PF07035_consen   16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR--   87 (167)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence            34444455555666666666666666555432    333444444444444433332111  2223333333333322  


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 016681          160 SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMS  226 (384)
Q Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  226 (384)
                        =...+..++..+...|++-+|.++.+......    ......++++..+.+|...-..+++-..+
T Consensus        88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              01133445555556666666666555432211    12223444555555555444444444433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.35  E-value=1.3  Score=36.95  Aligned_cols=227  Identities=12%  Similarity=0.124  Sum_probs=120.2

Q ss_pred             hhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCChHHHHHHH----HHHHhCC-CCCcHHhHHHHHHHHHhh
Q 016681           34 TKSDRNDLVWRIYQHMLENI--RYPNEATIRTLISALCKGGQLQTYVDML----DRIHGKR-CSPMVIVNTSLILRIIQE  106 (384)
Q Consensus        34 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~-~~~~~~~~~~l~~~~~~~  106 (384)
                      ....+.++|+..|.+-+.+-  ......++..+..+.++.|.+++++..-    +-..+.. ..---..|..+.+++-+.
T Consensus        17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l   96 (518)
T KOG1941|consen   17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL   96 (518)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666665554430  1112335556666677777666654332    1111110 001123344455555555


Q ss_pred             cchHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCChHHHHHHHHHHHhcC
Q 016681          107 ERIEEGMVLLKRMLRK-NMIH---DTIAYSLIVYAKVKMRNLESALVVYEEMLKRG-----FSANSFVYTTFIGAYCEYG  177 (384)
Q Consensus       107 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~  177 (384)
                      -++.+++.+-+.-... |..|   .-....++..++.-.+.++.+++.|+...+..     ......++..+-..|.+..
T Consensus        97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~  176 (518)
T KOG1941|consen   97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK  176 (518)
T ss_pred             HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence            5555555555443322 2222   11233446667777778888888888776531     1123456778888888888


Q ss_pred             CHHHHHHHHHHHHH----cCCCCChhhHH-----HHHHHHHhcCchHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHH
Q 016681          178 KIEEANCLMQEMEN----AGLKPYDETFN-----LLIEGCAKAKRIEESLSYCEQMMSR----KLLP-SCSAFNEMIRRL  243 (384)
Q Consensus       178 ~~~~a~~~~~~~~~----~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~  243 (384)
                      ++++|.-+..+..+    .++..-..-|.     .+.-++...|....|.+..++..+.    |-.+ .......+.+.|
T Consensus       177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy  256 (518)
T KOG1941|consen  177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY  256 (518)
T ss_pred             hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            88888766655432    12111111222     2334556677777777766665432    3211 233445566777


Q ss_pred             HhcCChHHHHHHHHHHH
Q 016681          244 CECGNAKQANGMLTLAL  260 (384)
Q Consensus       244 ~~~~~~~~a~~~~~~~~  260 (384)
                      -..|+.+.|..-++...
T Consensus       257 R~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  257 RSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HhcccHhHHHHHHHHHH
Confidence            78888888877776654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.33  E-value=0.33  Score=39.32  Aligned_cols=79  Identities=18%  Similarity=0.190  Sum_probs=59.5

Q ss_pred             HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChHHHH
Q 016681           93 VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLK-----RGFSANSFVYT  167 (384)
Q Consensus        93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  167 (384)
                      ..++..++..+...|+++.+...++++...... +...|..++.+|.+.|+...|...|+.+.+     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            456667777788888888888888888877544 777788888888888888888888877755     37777777776


Q ss_pred             HHHHH
Q 016681          168 TFIGA  172 (384)
Q Consensus       168 ~l~~~  172 (384)
                      .....
T Consensus       232 ~y~~~  236 (280)
T COG3629         232 LYEEI  236 (280)
T ss_pred             HHHHH
Confidence            66666

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.14  E-value=0.42  Score=38.76  Aligned_cols=77  Identities=16%  Similarity=0.209  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHhHHHHH
Q 016681          270 TYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS-----HSLVPGVDIYESL  344 (384)
Q Consensus       270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l  344 (384)
                      ++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            34444455555555555555555555443 33445555555555555555555555554433     3555555544444


Q ss_pred             HHH
Q 016681          345 VGI  347 (384)
Q Consensus       345 ~~~  347 (384)
                      ...
T Consensus       234 ~~~  236 (280)
T COG3629         234 EEI  236 (280)
T ss_pred             HHH
Confidence            333

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.97  E-value=1.5  Score=34.92  Aligned_cols=55  Identities=22%  Similarity=0.236  Sum_probs=28.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHH
Q 016681          274 LIGGYAKEGEIQEVLKLYYEMEYKSISPTL---PAYTSLISSLCQCGKLEEADKYFKIM  329 (384)
Q Consensus       274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~  329 (384)
                      +.+.|.+.|.+..|..-++.|.+. .+-+.   ..+-.+..+|...|-.++|...-+-+
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl  230 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL  230 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            345555666666666666666554 11111   23334445555666665555554433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.92  E-value=1.5  Score=34.84  Aligned_cols=81  Identities=7%  Similarity=0.129  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016681           58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRC--SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIV  135 (384)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  135 (384)
                      ...|+.-+. -.+.|++++|.+.|+.+....+  +-...+.-.++.++-+.++++.|+..+++..+.-+......|..-|
T Consensus        35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            334444333 3567888888888888876531  2234455566677778888888888888887765443344555555


Q ss_pred             HHHH
Q 016681          136 YAKV  139 (384)
Q Consensus       136 ~~~~  139 (384)
                      .+++
T Consensus       114 kgLs  117 (254)
T COG4105         114 KGLS  117 (254)
T ss_pred             HHHH
Confidence            5554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.90  E-value=0.95  Score=32.45  Aligned_cols=59  Identities=12%  Similarity=0.098  Sum_probs=33.3

Q ss_pred             HHHHhhcCChhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 016681           30 IHVVTKSDRNDLVWRIYQHMLENIRY--PNEATIRTLISALCKGGQLQTYVDMLDRIHGKR   88 (384)
Q Consensus        30 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   88 (384)
                      .....+.|++++|.+.|+.+..+-+.  -....-..++.++.+.+++++|...+++.++.+
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            33444666666666666666654211  123344555666666666666666666666554

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.80  E-value=1.6  Score=34.45  Aligned_cols=205  Identities=16%  Similarity=0.082  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV  139 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  139 (384)
                      .|.....+|....++++|...+.+..+.. +.+...|.       ....++.|.-+.+++....-  -...|+.....|.
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-------AAKayEqaamLake~~klsE--vvdl~eKAs~lY~  102 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-------AAKAYEQAAMLAKELSKLSE--VVDLYEKASELYV  102 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-------HHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHH
Confidence            44455556666677777766666554221 22222111       12233444444444443211  1234455555666


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCCChhhHHHHHHHHHhcCch
Q 016681          140 KMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENA---G--LKPYDETFNLLIEGCAKAKRI  214 (384)
Q Consensus       140 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~  214 (384)
                      ..|..+.|-..+++.-+.                ....++++|+++|++...-   +  .+--...+..+-..+.+...+
T Consensus       103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf  166 (308)
T KOG1585|consen  103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF  166 (308)
T ss_pred             HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence            667666666666554332                1223444555555443211   1  000112233344445555555


Q ss_pred             HHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHH
Q 016681          215 EESLSYCEQMMSR----KLLPS-CSAFNEMIRRLCECGNAKQANGMLTLALDKG---FSPNEITYSHLIGGYAKEGEIQE  286 (384)
Q Consensus       215 ~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~  286 (384)
                      ++|-..+.+-...    .-.++ ...|...|-.+.-..++..|...++.-.+.+   -+-+..+...|+.+| ..|+.++
T Consensus       167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~  245 (308)
T KOG1585|consen  167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE  245 (308)
T ss_pred             hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence            5554433322111    11111 2234445555566667777777776643321   122455666667666 3566666


Q ss_pred             HHHHH
Q 016681          287 VLKLY  291 (384)
Q Consensus       287 a~~~~  291 (384)
                      +.+++
T Consensus       246 ~~kvl  250 (308)
T KOG1585|consen  246 IKKVL  250 (308)
T ss_pred             HHHHH
Confidence            65554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.58  E-value=1.4  Score=32.74  Aligned_cols=139  Identities=9%  Similarity=0.075  Sum_probs=78.7

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH-HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHH-HH--H
Q 016681           57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV-IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTI-AY--S  132 (384)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~--~  132 (384)
                      +...|..-+. +++.+..++|+.-|..+.+.|...-+ .............|+...|...|+++-.....|... -.  .
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl  136 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL  136 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence            3445554444 35566677777777777766532211 122223344556777777777777776554444322 11  1


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 016681          133 LIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKP  196 (384)
Q Consensus       133 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  196 (384)
                      .-...+...|.++......+-+-..+-+.....-..|.-+-.+.|++.+|.+.|..+......|
T Consensus       137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap  200 (221)
T COG4649         137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP  200 (221)
T ss_pred             HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence            1122345667777777666665554444445555666666677777777777777766543333

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.58  E-value=0.72  Score=34.92  Aligned_cols=59  Identities=10%  Similarity=0.081  Sum_probs=27.4

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHH
Q 016681           26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN--EATIRTLISALCKGGQLQTYVDMLDRI   84 (384)
Q Consensus        26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~   84 (384)
                      +..+...|.+.|+.+.|.+.|.++.+....+.  ...+..+|+.....+++..+...+.+.
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            44455555555555555555555444432222  223444444444455555544444443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.49  E-value=2.4  Score=35.21  Aligned_cols=129  Identities=10%  Similarity=0.192  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CChHHHHHHHHHHHHcCC---CCChHHHHHHHHHHHhcCC-
Q 016681          109 IEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK--M----RNLESALVVYEEMLKRGF---SANSFVYTTFIGAYCEYGK-  178 (384)
Q Consensus       109 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-  178 (384)
                      +++...+++.|.+.|+.-+..+|-+..-....  .    .....|..+|+.|++...   .++...+..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34455566666776666555554442222222  1    123456667777766521   1233334444332  2222 


Q ss_pred             ---HHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCc--hHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681          179 ---IEEANCLMQEMENAGLKPYD--ETFNLLIEGCAKAKR--IEESLSYCEQMMSRKLLPSCSAFNEM  239 (384)
Q Consensus       179 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l  239 (384)
                         .+.++.+|+.+.+.|...+.  ...+.++..+.....  ..++..+++.+.+.++++....|..+
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence               24455666666665544332  122222222211111  23555666666666666555554443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.44  E-value=0.1  Score=27.23  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=19.2

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681          340 IYESLVGIHLEKGNKAKALHLCEEMV  365 (384)
Q Consensus       340 ~~~~l~~~~~~~g~~~~a~~~~~~~~  365 (384)
                      +|..|...|.+.|++++|++++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36677788888888888888888754

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.40  E-value=2  Score=33.87  Aligned_cols=222  Identities=22%  Similarity=0.135  Sum_probs=105.5

Q ss_pred             cchHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHH
Q 016681          107 ERIEEGMVLLKRMLRKNMIH-DTIAYSLIVYAKVKMRNLESALVVYEEMLKR-GFSANSFVYTTFIGAYCEYGKIEEANC  184 (384)
Q Consensus       107 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~  184 (384)
                      +....+...+.......... ....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            44455555555554443221 2345555555666666666666666665542 122344455555555666666666666


Q ss_pred             HHHHHHHcCCCCChhhHHHHHH-HHHhcCchHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681          185 LMQEMENAGLKPYDETFNLLIE-GCAKAKRIEESLSYCEQMMSRKL--LPSCSAFNEMIRRLCECGNAKQANGMLTLALD  261 (384)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  261 (384)
                      .+.........+ ......... .+...|+++.+...+.+......  ......+......+...++.+.+...+.....
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            666665543222 111222222 45556666666666666543211  01222222233334445555566655555554


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681          262 KGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT-LPAYTSLISSLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  331 (384)
                      .........+..+...+...++.+.+...+.......  |+ ...+..+...+...+..+.+...++....
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3211123445555555555555555555555555432  21 22223333333344445555555555544

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.31  E-value=0.054  Score=27.87  Aligned_cols=32  Identities=19%  Similarity=0.363  Sum_probs=19.7

Q ss_pred             HHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHH
Q 016681          326 FKIMKSHSLVPGVDIYESLVGIHLEKGNKAKAL  358 (384)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  358 (384)
                      |++.++..+. +...|..+...|...|++++|+
T Consensus         2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence            3444554443 5666777777777777776664

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.24  E-value=1.3  Score=33.62  Aligned_cols=61  Identities=16%  Similarity=0.149  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc--HHhHHHHHHHHHhhcchHHHHHHHHHHH
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM--VIVNTSLILRIIQEERIEEGMVLLKRML  120 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~  120 (384)
                      .+..+...|++.|+.+.|.+.|.++......+.  ...+-.+++.....+++..+...+.+..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            344555555555666666666555554332221  3334444555555555555555554443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.24  E-value=4.9  Score=37.77  Aligned_cols=60  Identities=8%  Similarity=0.082  Sum_probs=38.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHH----HHHHHHHhCCCCC
Q 016681          308 SLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKAL----HLCEEMVSEGLKP  371 (384)
Q Consensus       308 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~----~~~~~~~~~~~~p  371 (384)
                      -++..+.+..+++.+..+.+..-+.    ++..|..++..+.+.+..+.-.    ++++.......-|
T Consensus       710 dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ip  773 (933)
T KOG2114|consen  710 DLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIP  773 (933)
T ss_pred             HHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCC
Confidence            3555566666777776666655443    7788999999999988655544    4444444443334

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.21  E-value=3.6  Score=36.20  Aligned_cols=57  Identities=16%  Similarity=0.055  Sum_probs=27.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681          239 MIRRLCECGNAKQANGMLTLALDKGFSP-NEITYSHLIGGYAKEGEIQEVLKLYYEME  295 (384)
Q Consensus       239 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  295 (384)
                      +..++-+.|+.++|.+.++++.+..... .......|+.++...+.+.++..++.+..
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            4444445555555555555554432111 22244445555555555555555555543

The molecular function of this protein is uncertain.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=94.13  E-value=4.2  Score=36.58  Aligned_cols=184  Identities=11%  Similarity=0.018  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 016681          163 SFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRR  242 (384)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  242 (384)
                      ..+|...+..-...|+.+.+.-+|+...-.- ..=...|-..+.-....|+.+-+..++....+-..+..+.+.-.-...
T Consensus       297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            4455556666666666666666666654211 000122333333333346666666555554443332222222111222


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHhcCCCCChhhHHHHHHHH-----
Q 016681          243 LCECGNAKQANGMLTLALDKGFSPNEI-TYSHLIGGYAKEGEIQEVL---KLYYEMEYKSISPTLPAYTSLISSL-----  313 (384)
Q Consensus       243 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~~-----  313 (384)
                      .-..|++..|..+++.+.+.-  |+.. .-..-+....+.|..+.+.   .++......  .-+......+.--+     
T Consensus       376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~  451 (577)
T KOG1258|consen  376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRY  451 (577)
T ss_pred             HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHH
Confidence            234567788888887777653  3322 2222233444566666666   333322221  11222222222222     


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccC
Q 016681          314 CQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKG  352 (384)
Q Consensus       314 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  352 (384)
                      .-.++.+.|..++.++.+. ..++...|..+++.....+
T Consensus       452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence            2256778888888888775 3446666777776655544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=93.99  E-value=2.4  Score=33.34  Aligned_cols=226  Identities=19%  Similarity=0.134  Sum_probs=98.2

Q ss_pred             CChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCCcHHhHHHHHHHHHhhcchHHHHH
Q 016681           37 DRNDLVWRIYQHMLENIRYP-NEATIRTLISALCKGGQLQTYVDMLDRIHGK-RCSPMVIVNTSLILRIIQEERIEEGMV  114 (384)
Q Consensus        37 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~  114 (384)
                      +....+...+.......... ....+......+...+++..+...+...... ........+......+...+++..+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            34444444444444332210 2344445555555555566555555554431 113334444444445555555555555


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681          115 LLKRMLRKNMIHDTIAYSLIVY-AKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG  193 (384)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  193 (384)
                      .+.........+ ......... .+...|+++.+...+......  .|.                               
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~-------------------------------  162 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPE-------------------------------  162 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-------------------------------
Confidence            555555433222 111111111 344445555555555444331  110                               


Q ss_pred             CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 016681          194 LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSH  273 (384)
Q Consensus       194 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  273 (384)
                      .......+......+...++.+.+...+..............+..+...+...++.+.+...+......... ....+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~  241 (291)
T COG0457         163 LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYN  241 (291)
T ss_pred             ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhh
Confidence            001112222222223344455555555555444322112344455555555555566666666555543211 1233333


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhc
Q 016681          274 LIGGYAKEGEIQEVLKLYYEMEYK  297 (384)
Q Consensus       274 l~~~~~~~~~~~~a~~~~~~~~~~  297 (384)
                      +...+...+..+.+...+......
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         242 LALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Confidence            333333455566666666666554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.88  E-value=2  Score=31.92  Aligned_cols=139  Identities=9%  Similarity=0.063  Sum_probs=90.7

Q ss_pred             cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHH
Q 016681           92 MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDT-IAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSF-VYTTF  169 (384)
Q Consensus        92 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l  169 (384)
                      +...|...+. +.+.+..++|+.-|..+.+.|...-+ .............|+...|...|+++-.-...|-.. ....|
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl  136 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL  136 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence            3445554443 45677889999999999887754211 112223345667899999999999987654444332 11111


Q ss_pred             --HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC
Q 016681          170 --IGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP  231 (384)
Q Consensus       170 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  231 (384)
                        .-.+...|.++......+.+...+-+.....-..|.-+-.+.|++.+|.+.|..+......|
T Consensus       137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap  200 (221)
T COG4649         137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP  200 (221)
T ss_pred             HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence              23456788899888888877665543444455566667778899999999999887754443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=93.86  E-value=1.7  Score=31.18  Aligned_cols=55  Identities=20%  Similarity=0.123  Sum_probs=27.0

Q ss_pred             HHhcCChHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016681          138 KVKMRNLESALVVYEEMLKRGF--SANSFVYTTFIGAYCEYGKIEEANCLMQEMENA  192 (384)
Q Consensus       138 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  192 (384)
                      ..+.|++++|.+.|+.+..+-.  +-.....-.++.+|.+.+++++|...+++..+.
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3445555555555555554411  112233334555555555555555555555543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.71  E-value=0.23  Score=25.90  Aligned_cols=24  Identities=17%  Similarity=0.177  Sum_probs=14.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH
Q 016681          166 YTTFIGAYCEYGKIEEANCLMQEM  189 (384)
Q Consensus       166 ~~~l~~~~~~~~~~~~a~~~~~~~  189 (384)
                      |..|...|.+.|++++|++++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455666666666666666666663

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.65  E-value=2.2  Score=31.73  Aligned_cols=131  Identities=15%  Similarity=0.095  Sum_probs=55.2

Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 016681           45 IYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNM  124 (384)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  124 (384)
                      ....+.+.++.|+...+..+++.+.+.|++.....+    .+.++-+|.......+-.+  .+....+.++=-.|..+  
T Consensus        16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR--   87 (167)
T PF07035_consen   16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR--   87 (167)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH--
Confidence            334444455666666666666666666655443332    2233233322222222111  11222223322222221  


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681          125 IHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEM  189 (384)
Q Consensus       125 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  189 (384)
                        =...+..+++.+...|++-+|.++.......    +......++.+..+.+|..--..+++-.
T Consensus        88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff  146 (167)
T PF07035_consen   88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF  146 (167)
T ss_pred             --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              0013344555566666666666665543222    1222234455555555544444444333

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.59  E-value=1.4  Score=36.01  Aligned_cols=128  Identities=16%  Similarity=0.230  Sum_probs=71.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHH----------HcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC---CCCChhh
Q 016681          169 FIGAYCEYGKIEEANCLMQEME----------NAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK---LLPSCSA  235 (384)
Q Consensus       169 l~~~~~~~~~~~~a~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~  235 (384)
                      |.++|+....|+.-....-.+-          ..|.+.+..+...++..-....+++.+...+-++....   ..|+. +
T Consensus        25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~  103 (418)
T KOG4570|consen   25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-T  103 (418)
T ss_pred             hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-c
Confidence            4455555555654333331221          22344445555555555555566777777766665431   11111 1


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016681          236 FNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKS  298 (384)
Q Consensus       236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  298 (384)
                      -..+++.+. .-++++++.++..=...|+-||..+++.+|+.+.+.+++.+|.++...|....
T Consensus       104 ~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  104 IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            122233222 33556777777766677777777777777777777777777777776665543

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.59  E-value=1.6  Score=35.73  Aligned_cols=103  Identities=13%  Similarity=0.155  Sum_probs=77.5

Q ss_pred             CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChh
Q 016681          158 GFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG---LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCS  234 (384)
Q Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  234 (384)
                      |.+....+...++..-....+++.++..+-++....   ..|+. +-.+.++.+.+ -++++++.++..=++-|+.||..
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence            445566667777777777788999999988886532   22322 22233444433 36789999999889999999999


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681          235 AFNEMIRRLCECGNAKQANGMLTLALDK  262 (384)
Q Consensus       235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~  262 (384)
                      +++.+|+.+.+.+++..|..+...|...
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            9999999999999999999998887765

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.50  E-value=1.9  Score=37.53  Aligned_cols=123  Identities=16%  Similarity=0.079  Sum_probs=75.1

Q ss_pred             HhcCChHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 016681          244 CECGNAKQANGMLTLALD-KGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEA  322 (384)
Q Consensus       244 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  322 (384)
                      ...|+...|-+-+..... ..-.|+..  ......+...|+++.+.+.+...... +.....+...+++.....|+++.|
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence            345666655544444433 22223333  33333445678888888777766543 334556777788888888888888


Q ss_pred             HHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 016681          323 DKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLK  370 (384)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  370 (384)
                      ...-+-|....++ +++............|-++++...|+++....-+
T Consensus       377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence            8888877776555 4554444444455567777888888877654433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.46  E-value=0.093  Score=26.99  Aligned_cols=22  Identities=14%  Similarity=0.045  Sum_probs=9.9

Q ss_pred             CcHHhHHHHHHHHHhhcchHHH
Q 016681           91 PMVIVNTSLILRIIQEERIEEG  112 (384)
Q Consensus        91 ~~~~~~~~l~~~~~~~~~~~~a  112 (384)
                      .+...|+.+...|...|++++|
T Consensus        11 ~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   11 NNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             CCHHHHHHHHHHHHHCcCHHhh
Confidence            3444444444444444444444

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=93.21  E-value=3.9  Score=33.30  Aligned_cols=136  Identities=12%  Similarity=0.097  Sum_probs=78.6

Q ss_pred             ChHHHHHHHHHHHh-CCCCCcHHhHHHHHHHHHh-hc-chHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHH
Q 016681           73 QLQTYVDMLDRIHG-KRCSPMVIVNTSLILRIIQ-EE-RIEEGMVLLKRMLR-KNMIHDTIAYSLIVYAKVKMRNLESAL  148 (384)
Q Consensus        73 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~  148 (384)
                      .+.+|+.+|+..-. ..+-.|..+...+++.... .+ ....-.++.+-+.. .+-.++..+...++..+++.+++....
T Consensus       143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~  222 (292)
T PF13929_consen  143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF  222 (292)
T ss_pred             HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence            34555566553221 1234455666666665554 22 12222333333332 234556667777788888888888888


Q ss_pred             HHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCChhhHHHHHHHH
Q 016681          149 VVYEEMLKR-GFSANSFVYTTFIGAYCEYGKIEEANCLMQE-----MENAGLKPYDETFNLLIEGC  208 (384)
Q Consensus       149 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~  208 (384)
                      +.++..... +...|...|..+|+.....|+..-...+.++     +.+.++..+...-..+-..+
T Consensus       223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF  288 (292)
T PF13929_consen  223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF  288 (292)
T ss_pred             HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence            887776554 4555777888888888888887776666654     23445555555444444433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.20  E-value=1.2  Score=33.96  Aligned_cols=78  Identities=9%  Similarity=-0.024  Sum_probs=58.7

Q ss_pred             hhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC---CCCcHHhHHHHHHHHHhhcchH
Q 016681           34 TKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKR---CSPMVIVNTSLILRIIQEERIE  110 (384)
Q Consensus        34 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~  110 (384)
                      .+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++-+..+..   -.+|+..+.+|+..+.+.|+++
T Consensus       118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            34444 678888888877665556777777776666 668889999888876542   2668999999999999999998


Q ss_pred             HHH
Q 016681          111 EGM  113 (384)
Q Consensus       111 ~a~  113 (384)
                      .|.
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            874

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=93.03  E-value=8.4  Score=36.62  Aligned_cols=199  Identities=15%  Similarity=0.093  Sum_probs=106.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHH-HHHhcCchHHHHHHHHHHHhC----CCCCChhhHHHHH
Q 016681          173 YCEYGKIEEANCLMQEMENAGLKPYD-------ETFNLLIE-GCAKAKRIEESLSYCEQMMSR----KLLPSCSAFNEMI  240 (384)
Q Consensus       173 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~  240 (384)
                      .....++.+|..++.+....-..|+.       ..++.+-. .....|+++.|.++.+.....    -..+....+..+.
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            34567899999998887654322222       12333222 223457888988888776654    2333455667777


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCCHH---HHHHHHH--HHHhcCCH--HHHHHHHHHHHhc---CCC---CChhhHH
Q 016681          241 RRLCECGNAKQANGMLTLALDKGFSPNEI---TYSHLIG--GYAKEGEI--QEVLKLYYEMEYK---SIS---PTLPAYT  307 (384)
Q Consensus       241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~--~~~~~~~~--~~a~~~~~~~~~~---~~~---~~~~~~~  307 (384)
                      .+..-.|++++|..+.....+..-.-+..   .|..+..  .+...|..  ++....+......   ..+   +-..++.
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            78888899999998887766532222333   3333322  23455632  2333333333221   111   1123344


Q ss_pred             HHHHHHHh-cCChHHHHHHHHHHhhCCCCCCHhHHH--HHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 016681          308 SLISSLCQ-CGKLEEADKYFKIMKSHSLVPGVDIYE--SLVGIHLEKGNKAKALHLCEEMVSEGLKP  371 (384)
Q Consensus       308 ~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~p  371 (384)
                      .+..++.+ .+...++..-++--......|-.....  .|+......|+.++|...++++......+
T Consensus       585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~  651 (894)
T COG2909         585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG  651 (894)
T ss_pred             HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            44555444 112222222333222233332222222  67778889999999999999987754444

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.90  E-value=3.4  Score=37.26  Aligned_cols=99  Identities=15%  Similarity=0.123  Sum_probs=51.5

Q ss_pred             HhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 016681          104 IQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEAN  183 (384)
Q Consensus       104 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  183 (384)
                      .+.|+++.|.++..+..      +..-|..|.++....+++..|.+.|.....         |..|+-.+...|+.+...
T Consensus       648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~  712 (794)
T KOG0276|consen  648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA  712 (794)
T ss_pred             hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence            45566666655544431      444566666666666666666666554432         334555555556655555


Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHH
Q 016681          184 CLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQ  223 (384)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  223 (384)
                      .+-....+.|. .     |....+|...|+++++.+++.+
T Consensus       713 ~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  713 VLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             HHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence            55555554442 1     2222234445666666555543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.21  E-value=13  Score=36.74  Aligned_cols=31  Identities=6%  Similarity=-0.075  Sum_probs=19.6

Q ss_pred             CCchhhHHHHHHHHhhcC--ChhHHHHHHHHHHh
Q 016681           20 SLSLISFNTLIHVVTKSD--RNDLVWRIYQHMLE   51 (384)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~   51 (384)
                      .|+ .....+|.++.+.+  ..+.+++.......
T Consensus       788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~  820 (1265)
T KOG1920|consen  788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL  820 (1265)
T ss_pred             Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            344 44557777888877  66666666665553

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=91.94  E-value=1.9  Score=28.71  Aligned_cols=47  Identities=17%  Similarity=0.128  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681          216 ESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK  262 (384)
Q Consensus       216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  262 (384)
                      +..+-+..+...+..|++.+..+.+++|.+.+++..|.++|+.+..+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            44455555555566666666666666666666666666666666543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=91.72  E-value=2.5  Score=27.80  Aligned_cols=46  Identities=13%  Similarity=0.073  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681          215 EESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLAL  260 (384)
Q Consensus       215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  260 (384)
                      -++.+-++.+...+..|++....+.+++|-+.+++..|.++|+.+.
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3444455555555556666666666666666666666666666555

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.64  E-value=3  Score=31.98  Aligned_cols=73  Identities=14%  Similarity=0.012  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCchHHHH
Q 016681          145 ESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENA---GLKPYDETFNLLIEGCAKAKRIEESL  218 (384)
Q Consensus       145 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~  218 (384)
                      +.|.+.|-.+...+.--++.....+...|. ..+.+++..++....+.   +-.+|+..+..|+..+.+.++++.|.
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            556666666666554445555555555444 55777777777666542   22556677777777777777777663

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=91.63  E-value=7  Score=32.52  Aligned_cols=130  Identities=15%  Similarity=0.241  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--c----CchHHHHHHHHHHHhCCCC---CChhhHHHHHHHHHhcCC--
Q 016681          180 EEANCLMQEMENAGLKPYDETFNLLIEGCAK--A----KRIEESLSYCEQMMSRKLL---PSCSAFNEMIRRLCECGN--  248 (384)
Q Consensus       180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~--  248 (384)
                      ++...+++.+.+.|..-+..+|-+.......  .    ....++..+++.|.+..+.   ++...+..++..  ..++  
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e  156 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE  156 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence            3445566666666666655554443222222  1    1245667777777766432   223334444332  2222  


Q ss_pred             --hHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 016681          249 --AKQANGMLTLALDKGFSPNE--ITYSHLIGGYAKEGE--IQEVLKLYYEMEYKSISPTLPAYTSLIS  311 (384)
Q Consensus       249 --~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~  311 (384)
                        .+.++.+++.+.+.|+..+.  ...+.++........  ..++.++++.+.+.|+++....|..+.-
T Consensus       157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl  225 (297)
T PF13170_consen  157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL  225 (297)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence              24456666667666665432  233333332222111  4467788888888888777777665543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.62  E-value=5.3  Score=31.05  Aligned_cols=64  Identities=9%  Similarity=-0.068  Sum_probs=32.3

Q ss_pred             HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681           93 VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR  157 (384)
Q Consensus        93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  157 (384)
                      +.++|.+.--+...|+++.|.+.|+...+.+..-+-...|.-| ++.-.|++.-|.+-+...-+.
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~  162 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD  162 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc
Confidence            4556666666666666666666666666554332222222222 222345566665555554443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.54  E-value=4.3  Score=29.87  Aligned_cols=51  Identities=14%  Similarity=0.101  Sum_probs=20.9

Q ss_pred             ccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 016681           70 KGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLR  121 (384)
Q Consensus        70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  121 (384)
                      +.++.+++..+++.+.-.. |.....-..-...+...|++.+|..+|+++..
T Consensus        22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            3344555555554444332 11122222222234445555555555555443

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=91.40  E-value=3  Score=27.81  Aligned_cols=47  Identities=17%  Similarity=0.181  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681           41 LVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK   87 (384)
Q Consensus        41 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   87 (384)
                      +..+-++.+......|++.+..+.+.+|.+.+++..|.++|+.++..
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            45555555555566667777777777777777777777777666543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.35  E-value=4.5  Score=29.76  Aligned_cols=51  Identities=8%  Similarity=-0.051  Sum_probs=22.2

Q ss_pred             hhcCChhHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHh
Q 016681           34 TKSDRNDLVWRIYQHMLENIRYPNEATI-RTLISALCKGGQLQTYVDMLDRIHG   86 (384)
Q Consensus        34 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~   86 (384)
                      .+.++.+++..++.-+.--  .|..... ..-...+...|+|.+|..+|+.+..
T Consensus        21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            3445555555555554432  2222111 1112223445555555555555543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.31  E-value=5.7  Score=30.87  Aligned_cols=178  Identities=12%  Similarity=0.068  Sum_probs=94.8

Q ss_pred             CChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHH
Q 016681           37 DRNDLVWRIYQHMLENIRYPN-EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVL  115 (384)
Q Consensus        37 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  115 (384)
                      |-+.-|+-=|.+...  +.|+ +.+||.+.--+...|+++.|.+.|+...+.+..-+-...|.-| ++--.|++.-|.+-
T Consensus        79 GL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d  155 (297)
T COG4785          79 GLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD  155 (297)
T ss_pred             hHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence            333444444444433  4565 6788888888899999999999999999876333333333333 33347889999888


Q ss_pred             HHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681          116 LKRMLRKNMI-HDTIAYSLIVYAKVKMRNLESALVVY-EEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG  193 (384)
Q Consensus       116 ~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  193 (384)
                      +...-+.+.. |-...|-.+.   -..-++.+|..-+ ++..+.    |..-|...|-.|. .|++. ...+++.+....
T Consensus       156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a  226 (297)
T COG4785         156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKIS-EETLMERLKADA  226 (297)
T ss_pred             HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhc
Confidence            8777766532 2122222222   1233555555433 333333    4444444333222 12211 112222222211


Q ss_pred             CCCC-------hhhHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681          194 LKPY-------DETFNLLIEGCAKAKRIEESLSYCEQMMSR  227 (384)
Q Consensus       194 ~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  227 (384)
                       ..+       ..||--+...+...|+.++|..+|+-.+..
T Consensus       227 -~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         227 -TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             -cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence             111       244555566666677777777777766554

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=91.24  E-value=17  Score=36.05  Aligned_cols=31  Identities=19%  Similarity=0.315  Sum_probs=18.0

Q ss_pred             CCcHHhHHHHHHHHHhhc--chHHHHHHHHHHHH
Q 016681           90 SPMVIVNTSLILRIIQEE--RIEEGMVLLKRMLR  121 (384)
Q Consensus        90 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~  121 (384)
                      .|+ .....++.+|.+.+  .++.|+....+...
T Consensus       788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~  820 (1265)
T KOG1920|consen  788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL  820 (1265)
T ss_pred             Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            344 34445666666666  56666666666654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.21  E-value=0.67  Score=23.49  Aligned_cols=28  Identities=18%  Similarity=0.302  Sum_probs=21.5

Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          339 DIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       339 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      .+|..+..++...|++++|...+++.++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            4677778888888888888888888775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.19  E-value=0.59  Score=25.01  Aligned_cols=28  Identities=25%  Similarity=0.312  Sum_probs=20.6

Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          339 DIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       339 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      .+++.+...|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4677778888888888888888877654

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=91.06  E-value=25  Score=37.79  Aligned_cols=320  Identities=11%  Similarity=0.058  Sum_probs=148.2

Q ss_pred             HHHHHHhhcCChhHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 016681           28 TLIHVVTKSDRNDLVWRIYQHM----LENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRI  103 (384)
Q Consensus        28 ~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  103 (384)
                      ++..+-.+++.+..|...++.-    .+..  -....+..+...|+.-++++...-+...-..   .|+  .+ .-+...
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEH 1459 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHH
Confidence            3444555667777777777663    1110  1223344444477777777776665553111   122  12 223344


Q ss_pred             HhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHH-HHHHHHhcCCHHHH
Q 016681          104 IQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTT-FIGAYCEYGKIEEA  182 (384)
Q Consensus       104 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a  182 (384)
                      ...|++..|...|+.+.+.+.. ...+++-++......+.++.+.-..+-.... ..+....++. =+.+--+.++++..
T Consensus      1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred             HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence            5677777888888887776532 3556666666666666666666554444333 1222222222 23344566666666


Q ss_pred             HHHHHHHHHcCCCCChhhHHHH--HHHHHhcC--chHHHHHHHHHHHhCCC--------C-CChhhHHHHHHHHHhcCCh
Q 016681          183 NCLMQEMENAGLKPYDETFNLL--IEGCAKAK--RIEESLSYCEQMMSRKL--------L-PSCSAFNEMIRRLCECGNA  249 (384)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~--------~-~~~~~~~~l~~~~~~~~~~  249 (384)
                      .+...   ..    +..+|...  .....+..  +.-......+.+.+.-+        . .-...|..++....-..-.
T Consensus      1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred             hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            65554   11    11222222  11111111  11111112222221111        1 0112333333332221111


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhcCCCC-----ChhhHHHHHHHHHhcCChHHHH
Q 016681          250 KQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLY-YEMEYKSISP-----TLPAYTSLISSLCQCGKLEEAD  323 (384)
Q Consensus       250 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~  323 (384)
                      .....+...-.......+..-|-.-+..-....+..+-+--+ +.+......|     -..+|....+....+|+++.|.
T Consensus      1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred             HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence            111111000000000111111222221111111111111111 1122211122     2457777888888899999998


Q ss_pred             HHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          324 KYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      ..+-...+.+   -+..+...+......|+...|+.++++-.+.
T Consensus      1691 nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1691 NALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred             HHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            8877776654   3456667778889999999999999998754

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.90  E-value=5.2  Score=30.62  Aligned_cols=88  Identities=18%  Similarity=0.147  Sum_probs=46.2

Q ss_pred             HHccCChHHHHHHHHHHHhCCCCCc-----HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 016681           68 LCKGGQLQTYVDMLDRIHGKRCSPM-----VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR  142 (384)
Q Consensus        68 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  142 (384)
                      +...|++++|..-|......- ++.     ...|..-..++.+.+.++.|++-..+.++.+.. ...+...-..+|.+..
T Consensus       105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e  182 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME  182 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence            345566666666666555442 221     223333444556666666666666666655432 2222222334566666


Q ss_pred             ChHHHHHHHHHHHHc
Q 016681          143 NLESALVVYEEMLKR  157 (384)
Q Consensus       143 ~~~~a~~~~~~~~~~  157 (384)
                      .+++|+.=|..+.+.
T Consensus       183 k~eealeDyKki~E~  197 (271)
T KOG4234|consen  183 KYEEALEDYKKILES  197 (271)
T ss_pred             hHHHHHHHHHHHHHh
Confidence            666666666666654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.65  E-value=0.8  Score=23.09  Aligned_cols=28  Identities=18%  Similarity=0.217  Sum_probs=20.8

Q ss_pred             hHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          339 DIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       339 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      ..|..+...+...|++++|.+.+++..+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3566777788888888888888888765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=90.45  E-value=12  Score=33.01  Aligned_cols=122  Identities=9%  Similarity=-0.017  Sum_probs=74.9

Q ss_pred             HccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 016681           69 CKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESAL  148 (384)
Q Consensus        69 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  148 (384)
                      ...|++..|-+-+....... +.++.........+...|+++.+.+.+...... +.....+...+++...+.|+++.|.
T Consensus       300 ~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~  377 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL  377 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence            34566666544443333322 333333333344566778888888877765443 2224557777888888888888888


Q ss_pred             HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681          149 VVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG  193 (384)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  193 (384)
                      ..-+.|....+. ++.............|-++++...+.+....+
T Consensus       378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence            888888776554 44444444444455667788888877776543

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=90.20  E-value=13  Score=33.10  Aligned_cols=165  Identities=12%  Similarity=0.075  Sum_probs=90.2

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681          162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR  241 (384)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  241 (384)
                      |.....+++..+..+..+.-.+.+-.+|..-|  .+...|..+++.|..+ ..++...+++++.+..+. |+..-..+..
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence            45555666666666666666666666666654  3445666677766666 456666677766665543 4434444444


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHh
Q 016681          242 RLCECGNAKQANGMLTLALDKGFSP-----NEITYSHLIGGYAKEGEIQEVLKLYYEMEYK-SISPTLPAYTSLISSLCQ  315 (384)
Q Consensus       242 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~  315 (384)
                      .|-+ ++...+...|..+...-++.     -...|..+....  ..+.+....+..++... |...-...+.-+-.-|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            4444 66666666666655432210     112344444321  24455555555555433 222223344444455666


Q ss_pred             cCChHHHHHHHHHHhhCC
Q 016681          316 CGKLEEADKYFKIMKSHS  333 (384)
Q Consensus       316 ~g~~~~a~~~~~~~~~~~  333 (384)
                      ..++.+|++++..+.+.+
T Consensus       218 ~eN~~eai~Ilk~il~~d  235 (711)
T COG1747         218 NENWTEAIRILKHILEHD  235 (711)
T ss_pred             ccCHHHHHHHHHHHhhhc
Confidence            667777777777666543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.91  E-value=0.79  Score=23.23  Aligned_cols=27  Identities=33%  Similarity=0.426  Sum_probs=13.2

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681          305 AYTSLISSLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~  331 (384)
                      +|..+...+...|++++|+..|++.++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344444555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.79  E-value=0.68  Score=25.45  Aligned_cols=26  Identities=35%  Similarity=0.470  Sum_probs=20.0

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681          343 SLVGIHLEKGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       343 ~l~~~~~~~g~~~~a~~~~~~~~~~~  368 (384)
                      .+..+|...|+.+.|.++++++.+.|
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            46677888888888888888887654

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.44  E-value=18  Score=33.50  Aligned_cols=112  Identities=9%  Similarity=-0.017  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHhcCCCCchhhHHHHH--HH---HhhcCChhHHHHHHHHHHh-------cCCCCCHHHHHHHHHHHHccC
Q 016681            5 EVAFDVCRYLEQRGFSLSLISFNTLI--HV---VTKSDRNDLVWRIYQHMLE-------NIRYPNEATIRTLISALCKGG   72 (384)
Q Consensus         5 ~~A~~~~~~~~~~~~~~~~~~~~~l~--~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~   72 (384)
                      ..|.+.++...+.|   +......+.  ..   +...++++.|...|+.+.+       .+   +......+..+|.+..
T Consensus       229 ~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~  302 (552)
T KOG1550|consen  229 SEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL  302 (552)
T ss_pred             hHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence            45666666666554   222222222  11   2244566666666666655       22   1223333444444322


Q ss_pred             -----ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh-hcchHHHHHHHHHHHHcC
Q 016681           73 -----QLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ-EERIEEGMVLLKRMLRKN  123 (384)
Q Consensus        73 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~  123 (384)
                           +.+.|..++......+ .|+....-..+..... ..+...|.++|...-+.|
T Consensus       303 ~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G  358 (552)
T KOG1550|consen  303 GVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG  358 (552)
T ss_pred             CCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence                 3444666666555555 3333332222221111 123455666666665555

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.37  E-value=1.3  Score=23.59  Aligned_cols=27  Identities=30%  Similarity=0.335  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681          164 FVYTTFIGAYCEYGKIEEANCLMQEME  190 (384)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~  190 (384)
                      .+++.+...|...|++++|..++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            345566666666666666666666554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.34  E-value=13  Score=31.84  Aligned_cols=65  Identities=20%  Similarity=0.136  Sum_probs=48.1

Q ss_pred             ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681          197 YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP---SCSAFNEMIRRLCECGNAKQANGMLTLALD  261 (384)
Q Consensus       197 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  261 (384)
                      ...++..+...+.+.|.++.|...+..+...+...   .+.....-++.+-..|+..+|...++...+
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34678888888889999999998888887754222   334555556677778888888888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=89.23  E-value=17  Score=33.00  Aligned_cols=326  Identities=14%  Similarity=0.115  Sum_probs=171.6

Q ss_pred             CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 016681           21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEA-TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSL   99 (384)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   99 (384)
                      .+...|..++.---.....+.+..++..++..  .|... -|......=.+.|..+.+..+|++.... ++.+...|...
T Consensus        43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y  119 (577)
T KOG1258|consen   43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY  119 (577)
T ss_pred             hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence            35566766676555555666777777777654  34433 4555556566777788888888877654 35667777666


Q ss_pred             HHHHH-hhcchHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH--
Q 016681          100 ILRII-QEERIEEGMVLLKRMLRK-NMI-HDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYC--  174 (384)
Q Consensus       100 ~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--  174 (384)
                      ...+. ..|+.+.....|+..... |.. .+...|...+..-..++++.....++++.++.    ....++....-|.  
T Consensus       120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~  195 (577)
T KOG1258|consen  120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQL  195 (577)
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHH
Confidence            65444 345666666777766553 211 13446666666666777777777777777764    1222222221111  


Q ss_pred             -hc------CCHHHHHHHHHHHHH--------------------cCCCCCh---hhHHHHHHH-------HHhcCchHHH
Q 016681          175 -EY------GKIEEANCLMQEMEN--------------------AGLKPYD---ETFNLLIEG-------CAKAKRIEES  217 (384)
Q Consensus       175 -~~------~~~~~a~~~~~~~~~--------------------~~~~~~~---~~~~~l~~~-------~~~~~~~~~a  217 (384)
                       +.      ...+++.++-.....                    .+ .|..   ...+.+-..       +-........
T Consensus       196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~-~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~k  274 (577)
T KOG1258|consen  196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDST-DPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEK  274 (577)
T ss_pred             HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhcc-CccchhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence             11      123333332222211                    01 1110   011111111       1111122222


Q ss_pred             HHHHHHHHhC---CCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 016681          218 LSYCEQMMSR---KLL----PSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKL  290 (384)
Q Consensus       218 ~~~~~~~~~~---~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  290 (384)
                      ...++.-+..   .++    ++..+|...+.--...|+.+.+.-++++..-. +..-...|-..+.-....|+.+-|..+
T Consensus       275 r~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~  353 (577)
T KOG1258|consen  275 RWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNV  353 (577)
T ss_pred             HHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHH
Confidence            3333333322   112    23456777777778888888888888877643 122334555555555566888888777


Q ss_pred             HHHHHhcCCCCChhhHHHHHHHH-HhcCChHHHHHHHHHHhhCCCCCCHh-HHHHHHHHHhccCCHHHHH
Q 016681          291 YYEMEYKSISPTLPAYTSLISSL-CQCGKLEEADKYFKIMKSHSLVPGVD-IYESLVGIHLEKGNKAKAL  358 (384)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~  358 (384)
                      +....+--+ |+......+-..+ -..|++..|..+++.+.+.-  |+.. .-..-+....+.|+.+.+.
T Consensus       354 ~~~~~~i~~-k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  354 LARACKIHV-KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHhhhhhcC-CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence            776655432 2222222222222 24678888888888887742  3322 2222334455667666666

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=89.14  E-value=36  Score=36.73  Aligned_cols=309  Identities=9%  Similarity=0.003  Sum_probs=161.6

Q ss_pred             cchHHHHHHHHHHHhcCC--CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGF--SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVD   79 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   79 (384)
                      +.|.+|+-.++.-.....  ......|-.+...|+.-++++...-+...-..     +...+ ..|......|++..|..
T Consensus      1397 ~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~~g~~~da~~ 1470 (2382)
T KOG0890|consen 1397 KAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEASGNWADAAA 1470 (2382)
T ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHhhccHHHHHH
Confidence            456777777777311111  11233344455588888998888777663111     22223 33445677899999999


Q ss_pred             HHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcC
Q 016681           80 MLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYS-LIVYAKVKMRNLESALVVYEEMLKRG  158 (384)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~  158 (384)
                      .|+.+.+.+ ++....++.++......|.++...-..+-..... .+....++ .=+.+.-+.++++.......   .. 
T Consensus      1471 Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~- 1544 (2382)
T KOG0890|consen 1471 CYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DR- 1544 (2382)
T ss_pred             HHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cc-
Confidence            999999987 6668888888888888888888877666655442 22333333 23344467778887777665   22 


Q ss_pred             CCCChHHHHHH--HHHHHhcC--CHHHHHHHHHHHHHcCCCC--------C-hhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681          159 FSANSFVYTTF--IGAYCEYG--KIEEANCLMQEMENAGLKP--------Y-DETFNLLIEGCAKAKRIEESLSYCEQMM  225 (384)
Q Consensus       159 ~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~~--------~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~  225 (384)
                         +..+|...  .....+..  +.-.-.+.++.+.+.-+.|        + ...|..++....-.    +.....+...
T Consensus      1545 ---n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~~~~~~l~ 1617 (2382)
T KOG0890|consen 1545 ---NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELENSIEELK 1617 (2382)
T ss_pred             ---cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHHHHHHHhh
Confidence               33333332  22222222  2111112333332211111        0 12233333322211    1111111111


Q ss_pred             hCC----CCCChhhHHHHHHHHHhcCChHHHHHHHHH-HHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681          226 SRK----LLPSCSAFNEMIRRLCECGNAKQANGMLTL-ALDK----GFS-PNEITYSHLIGGYAKEGEIQEVLKLYYEME  295 (384)
Q Consensus       226 ~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  295 (384)
                      ...    ...+..-|..-+..-....+..+-.--+++ +...    +.. --..+|....+.....|.++.|...+-...
T Consensus      1618 ~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1618 KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred             ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence            111    111111222222211111111111111111 1111    111 134577777787777999999988877776


Q ss_pred             hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681          296 YKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH  332 (384)
Q Consensus       296 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  332 (384)
                      +.+ .  +..+-.....+...|+...|+.+++...+.
T Consensus      1698 e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1698 ESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred             hcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            665 2  345666778888999999999999988753

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.12  E-value=19  Score=33.35  Aligned_cols=278  Identities=12%  Similarity=0.014  Sum_probs=148.7

Q ss_pred             hHHHHHHHHHHHhCCCCCcHHhHHHHHHH---HHhhcchHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-
Q 016681           74 LQTYVDMLDRIHGKRCSPMVIVNTSLILR---IIQEERIEEGMVLLKRMLR-------KNMIHDTIAYSLIVYAKVKMR-  142 (384)
Q Consensus        74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~-  142 (384)
                      ...+.++++.....| ..........+..   +....+.+.|+..++....       .|   ......-+..+|.+.. 
T Consensus       228 ~~~a~~~~~~~a~~g-~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~  303 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG-HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG  303 (552)
T ss_pred             hhHHHHHHHHHHhhc-chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence            457888888887766 2222222222222   3356788999999988876       44   2334555666666643 


Q ss_pred             ----ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--hcCchH
Q 016681          143 ----NLESALVVYEEMLKRGFSANSFVYTTFIGAYCE-YGKIEEANCLMQEMENAGLKPYDETFNLLIEGCA--KAKRIE  215 (384)
Q Consensus       143 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~  215 (384)
                          +.+.|..++....+.|.+ +....-..+..... ..+...|.++|...-+.|. +....+..++....  -..+..
T Consensus       304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~  381 (552)
T KOG1550|consen  304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLE  381 (552)
T ss_pred             CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHH
Confidence                667788888888877653 44333333322222 2457889999999888884 32222222222222  223678


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hh----cCCHHHH
Q 016681          216 ESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGY----AK----EGEIQEV  287 (384)
Q Consensus       216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~----~~~~~~a  287 (384)
                      .|..++++..+.+.. ...--...+..+.. +.++.+...+..+.+.|.. ...+-...+..-    ..    ..+.+.+
T Consensus       382 ~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~  458 (552)
T KOG1550|consen  382 LAFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERA  458 (552)
T ss_pred             HHHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHH
Confidence            889999988888733 32222223333333 6666666666666555433 222222211111    11    2245566


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHhc----CChHHHHHHHHHHhhCCCCCCHhHHHHHHHHH----hccCCHHHHHH
Q 016681          288 LKLYYEMEYKSISPTLPAYTSLISSLCQC----GKLEEADKYFKIMKSHSLVPGVDIYESLVGIH----LEKGNKAKALH  359 (384)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~  359 (384)
                      ...+.+....|   +......+-..|...    .+++.|...+......+   ...+|+ +...+    .-.. ...|.+
T Consensus       459 ~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~~~a~~  530 (552)
T KOG1550|consen  459 FSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-LHLAKR  530 (552)
T ss_pred             HHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-hHHHHH
Confidence            66666665554   334444444444332    24666766666665554   222232 22111    1222 566777


Q ss_pred             HHHHHHhCC
Q 016681          360 LCEEMVSEG  368 (384)
Q Consensus       360 ~~~~~~~~~  368 (384)
                      ++++..+.+
T Consensus       531 ~~~~~~~~~  539 (552)
T KOG1550|consen  531 YYDQASEED  539 (552)
T ss_pred             HHHHHHhcC
Confidence            777666543

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.03  E-value=11  Score=30.49  Aligned_cols=209  Identities=13%  Similarity=0.063  Sum_probs=125.5

Q ss_pred             CCCCChHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCchHHHHHHHHHHHhC---C--
Q 016681          158 GFSANSFVYTTFIGAY-CEYGKIEEANCLMQEMENAGLKPY---DETFNLLIEGCAKAKRIEESLSYCEQMMSR---K--  228 (384)
Q Consensus       158 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--  228 (384)
                      +-.||+..-|..-.+- .+..++++|+.-|++..+..-...   -.....++....+.+++++....+.++..-   .  
T Consensus        21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT  100 (440)
T KOG1464|consen   21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT  100 (440)
T ss_pred             CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence            4456655444332211 234468899999988876432222   234556778888899999999888887532   1  


Q ss_pred             CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh----c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----
Q 016681          229 LLPSCSAFNEMIRRLCECGNAKQANGMLTLALD----K-GFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSI----  299 (384)
Q Consensus       229 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----  299 (384)
                      -..+....|+++...+...+.+-...+++.-.+    . +-+.=-.|-+.+...|...+.+.+..+++.++....-    
T Consensus       101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG  180 (440)
T KOG1464|consen  101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG  180 (440)
T ss_pred             ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence            112455677777777666666666555554332    1 1111112335667777778888888888887754311    


Q ss_pred             C-------CChhhHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHhHHHHHHHHH-----hccCCHHHHHHHHHHHHh
Q 016681          300 S-------PTLPAYTSLISSLCQCGKLEEADKYFKIMKSH-SLVPGVDIYESLVGIH-----LEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       300 ~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~  366 (384)
                      .       .-...|..-|+.|....+-..-..++++.... .--|.+.+.. +|+-|     .+.|++++|..-|=+..+
T Consensus       181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFK  259 (440)
T KOG1464|consen  181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFK  259 (440)
T ss_pred             chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence            1       11345677777888888888888888776542 2234444333 34433     466788888777766654


Q ss_pred             C
Q 016681          367 E  367 (384)
Q Consensus       367 ~  367 (384)
                      .
T Consensus       260 N  260 (440)
T KOG1464|consen  260 N  260 (440)
T ss_pred             c
Confidence            3

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.01  E-value=7  Score=28.34  Aligned_cols=52  Identities=15%  Similarity=0.144  Sum_probs=26.6

Q ss_pred             cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 016681           71 GGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN  123 (384)
Q Consensus        71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  123 (384)
                      .++++++..+++.+.-.. |.....-..-...+...|++++|..+|+++.+.+
T Consensus        23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            556666666666655432 2222222222334455666666666666665544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.96  E-value=0.21  Score=36.28  Aligned_cols=128  Identities=16%  Similarity=0.214  Sum_probs=74.1

Q ss_pred             HHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 016681          204 LIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGE  283 (384)
Q Consensus       204 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  283 (384)
                      ++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++..       +..-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence            45566666777777777777776655556777777777777777666666666511       11233455666667777


Q ss_pred             HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCC
Q 016681          284 IQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGN  353 (384)
Q Consensus       284 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  353 (384)
                      ++++.-++.++....-.         +..+...++++.|.+++.   +.   ++...|..++..+...+.
T Consensus        86 ~~~a~~Ly~~~~~~~~a---------l~i~~~~~~~~~a~e~~~---~~---~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen   86 YEEAVYLYSKLGNHDEA---------LEILHKLKDYEEAIEYAK---KV---DDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             HHHHHHHHHCCTTHTTC---------SSTSSSTHCSCCCTTTGG---GC---SSSHHHHHHHHHHCTSTC
T ss_pred             HHHHHHHHHHcccHHHH---------HHHHHHHccHHHHHHHHH---hc---CcHHHHHHHHHHHHhcCc
Confidence            77777666554322110         011234455555553332   21   356778888887776654

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=88.95  E-value=4.9  Score=26.53  Aligned_cols=62  Identities=13%  Similarity=0.107  Sum_probs=38.0

Q ss_pred             ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 016681           38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLI  100 (384)
Q Consensus        38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  100 (384)
                      +.-++.+-++.+......|++....+.+++|.+.+++..|.++|+.++..- ..+...|..++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l   83 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL   83 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence            334556666666666666777777777777777777777777777665322 22333444444

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PRK09687 putative lyase; Provisional

Probab=88.75  E-value=12  Score=30.85  Aligned_cols=136  Identities=18%  Similarity=0.090  Sum_probs=66.0

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-chHHHHHHHHHHHhCCCCCChhhHHHHH
Q 016681          162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAK-RIEESLSYCEQMMSRKLLPSCSAFNEMI  240 (384)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~  240 (384)
                      +..+-...+.++.+.++ +.+...+-.+.+   .++...-...+.++.+.+ +...+...+..+...   ++..+-...+
T Consensus       141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~  213 (280)
T PRK09687        141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI  213 (280)
T ss_pred             CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence            44444555555555555 344444444443   233334444444444432 133444444444432   3555556666


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 016681          241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSL  313 (384)
Q Consensus       241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  313 (384)
                      .++.+.++. .+...+-...+.+   +  .....+.++...|.. +|...+..+.+..  ||..+-...+.++
T Consensus       214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~  277 (280)
T PRK09687        214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL  277 (280)
T ss_pred             HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence            666666663 3444443333331   2  223455666666664 5666666666532  4555554444444

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.64  E-value=4.8  Score=31.29  Aligned_cols=77  Identities=10%  Similarity=0.076  Sum_probs=55.5

Q ss_pred             hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCcHHhHHHHHHH
Q 016681           25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKR--CSPMVIVNTSLILR  102 (384)
Q Consensus        25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~  102 (384)
                      +.+..++.+.+.+.+.+++...+.-++.++ -|...-..++..+|-.|++++|..-++-.-...  ..+-...|..++++
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            345567788888899999998888777643 266677888899999999999988877665543  13345566666654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.27  E-value=15  Score=31.37  Aligned_cols=65  Identities=17%  Similarity=0.130  Sum_probs=43.9

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681          127 DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA---NSFVYTTFIGAYCEYGKIEEANCLMQEMEN  191 (384)
Q Consensus       127 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  191 (384)
                      ...+|..+...+.+.|.++.|...+..+...+...   .+...-.-++..-..|+..+|...++....
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44567777777888888888888887777643211   334444456666777888888887777665

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK11619 lytic murein transglycosylase; Provisional

Probab=88.25  E-value=23  Score=33.38  Aligned_cols=310  Identities=11%  Similarity=0.044  Sum_probs=144.6

Q ss_pred             hhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHH
Q 016681           34 TKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGM  113 (384)
Q Consensus        34 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  113 (384)
                      .+.|++..+.++...+...-. ..-..|..+.... ....+++....+++-..  .+.....-..-+..+.+.+++....
T Consensus        44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~~~~w~~~~  119 (644)
T PRK11619         44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANPT--LPPARSLQSRFVNELARREDWRGLL  119 (644)
T ss_pred             HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHccCHHHHH
Confidence            455666666666655532211 1222233332211 12234444444443221  1222233333444555566666555


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH--HHHHHHHHH
Q 016681          114 VLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEA--NCLMQEMEN  191 (384)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~  191 (384)
                      +.+..     .+.+...-.....+....|+.++|......+-..|.. .+..++.++..+.+.|.....  .+-++.+..
T Consensus       120 ~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~  193 (644)
T PRK11619        120 AFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMK  193 (644)
T ss_pred             HhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            42211     1234444455666777778877777666666555433 456777777777766654332  222222222


Q ss_pred             cCC-----------CCChh-hHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHH---HHHHHHHhcCChHHHHHHH
Q 016681          192 AGL-----------KPYDE-TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFN---EMIRRLCECGNAKQANGML  256 (384)
Q Consensus       192 ~~~-----------~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~  256 (384)
                      .|-           .++.. ....++..+   .+...+...+..     +.++...-.   ..+.-+ ...+.+.|...+
T Consensus       194 ~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rl-ar~d~~~A~~~~  264 (644)
T PRK11619        194 AGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFART-----TGPTDFTRQMAAVAFASV-ARQDAENARLMI  264 (644)
T ss_pred             CCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc-----cCCChhhHHHHHHHHHHH-HHhCHHHHHHHH
Confidence            221           11100 111111111   111111111111     112221111   112222 345567788888


Q ss_pred             HHHHhcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 016681          257 TLALDKG-FSPN--EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHS  333 (384)
Q Consensus       257 ~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  333 (384)
                      ....... ..+.  ...+..+....+..+...++...++......  .+......-+..-.+.++++.+...+..|....
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~  342 (644)
T PRK11619        265 PSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA  342 (644)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh
Confidence            7764432 2211  1233344333333332556666665543332  234444555555557888888888888875532


Q ss_pred             CCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681          334 LVPGVDIYESLVGIHLEKGNKAKALHLCEEMV  365 (384)
Q Consensus       334 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  365 (384)
                       .-...-.--+.+++...|+.++|...|+++.
T Consensus       343 -~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a  373 (644)
T PRK11619        343 -KEKDEWRYWQADLLLEQGRKAEAEEILRQLM  373 (644)
T ss_pred             -ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence             2233334445677677888888888888874

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=88.21  E-value=22  Score=33.04  Aligned_cols=31  Identities=13%  Similarity=0.228  Sum_probs=0.0

Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCcccccccc
Q 016681          350 EKGNKAKALHLCEEMVSEGLKPSTSYLCSAS  380 (384)
Q Consensus       350 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  380 (384)
                      +.|++.+|.+.+-.+.+.++-|.......+.
T Consensus       507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~  537 (566)
T PF07575_consen  507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLC  537 (566)
T ss_dssp             -------------------------------
T ss_pred             hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence            4577778887777777777777665544443

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=88.11  E-value=15  Score=31.10  Aligned_cols=98  Identities=14%  Similarity=0.017  Sum_probs=55.5

Q ss_pred             CCChhhHHHHHHHHHhcCc------------hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681          195 KPYDETFNLLIEGCAKAKR------------IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK  262 (384)
Q Consensus       195 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  262 (384)
                      +-|..+|-.++..--..-.            .+.-+.++++..+.++ -+...+..++..+.+..+.+...+.++.+...
T Consensus        16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~   94 (321)
T PF08424_consen   16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK   94 (321)
T ss_pred             cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4456677776654322211            2344566666666644 35556666666666666677767777777665


Q ss_pred             CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 016681          263 GFSPNEITYSHLIGGYAK---EGEIQEVLKLYYEM  294 (384)
Q Consensus       263 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~  294 (384)
                      .+. +...|...+.....   .-.++....+|.+.
T Consensus        95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~  128 (321)
T PF08424_consen   95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKC  128 (321)
T ss_pred             CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            332 56666666655443   23455666555544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.98  E-value=1.8  Score=21.69  Aligned_cols=27  Identities=11%  Similarity=0.123  Sum_probs=14.2

Q ss_pred             hHHHHHHHHhhcCChhHHHHHHHHHHh
Q 016681           25 SFNTLIHVVTKSDRNDLVWRIYQHMLE   51 (384)
Q Consensus        25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~   51 (384)
                      .|..+...+...|++++|++.|++..+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            344455555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.97  E-value=6.4  Score=30.18  Aligned_cols=89  Identities=21%  Similarity=0.222  Sum_probs=45.3

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 016681          138 KVKMRNLESALVVYEEMLKRGFSAN----SFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPY-DETFNLLIEGCAKAK  212 (384)
Q Consensus       138 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  212 (384)
                      +.+.|++++|..-|...+..-....    ...|..-..++.+.+.++.|++--.+..+.+  |+ ......-..+|.+..
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~e  182 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKME  182 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhh
Confidence            4556666666666666665421111    2233333445556666666666555555543  21 112222234455556


Q ss_pred             chHHHHHHHHHHHhCC
Q 016681          213 RIEESLSYCEQMMSRK  228 (384)
Q Consensus       213 ~~~~a~~~~~~~~~~~  228 (384)
                      .++.|+.-|+.+.+..
T Consensus       183 k~eealeDyKki~E~d  198 (271)
T KOG4234|consen  183 KYEEALEDYKKILESD  198 (271)
T ss_pred             hHHHHHHHHHHHHHhC
Confidence            6666666666666554

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.71  E-value=0.34  Score=35.20  Aligned_cols=83  Identities=10%  Similarity=0.100  Sum_probs=48.1

Q ss_pred             HHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcc
Q 016681           29 LIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEER  108 (384)
Q Consensus        29 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  108 (384)
                      +++.+.+.+.++.....++.+...+...+....+.++..|++.++.+...++++...       ..-...++..+.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence            456666677777777777777766555567777777777777766666666655111       1222334445555555


Q ss_pred             hHHHHHHHHH
Q 016681          109 IEEGMVLLKR  118 (384)
Q Consensus       109 ~~~a~~~~~~  118 (384)
                      ++++.-++.+
T Consensus        86 ~~~a~~Ly~~   95 (143)
T PF00637_consen   86 YEEAVYLYSK   95 (143)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            5555554444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.62  E-value=1.8  Score=21.78  Aligned_cols=27  Identities=26%  Similarity=0.290  Sum_probs=19.6

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          340 IYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       340 ~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      +|..+...|...|++++|...|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            466667777777777777777777664

...

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.78  E-value=8.6  Score=29.99  Aligned_cols=56  Identities=13%  Similarity=0.074  Sum_probs=27.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681          133 LIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEM  189 (384)
Q Consensus       133 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  189 (384)
                      ..+..+.+.+.+.+++...++-.+... .|...-..++..++-.|+|++|..-++-.
T Consensus         6 ~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~   61 (273)
T COG4455           6 DTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLA   61 (273)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence            334445555555555555544444321 13444444555555555555555544443

>PRK09687 putative lyase; Provisional

Probab=86.72  E-value=17  Score=30.11  Aligned_cols=234  Identities=11%  Similarity=0.007  Sum_probs=127.6

Q ss_pred             CcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCCChHHH
Q 016681           91 PMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNL----ESALVVYEEMLKRGFSANSFVY  166 (384)
Q Consensus        91 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~  166 (384)
                      +|.......+..+...|. +.+...+..+...   +|...-...+.++.+.|+.    .++...+..+...  .++..+-
T Consensus        35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR  108 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR  108 (280)
T ss_pred             CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence            344444444445544443 2333333333332   2444444455555555542    3455555544332  2344455


Q ss_pred             HHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681          167 TTFIGAYCEYGKI-----EEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR  241 (384)
Q Consensus       167 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  241 (384)
                      ...+.++...+..     ..+...+.....   .++..+-...+.++.+.++ +.+...+-.+.+.   ++..+-...+.
T Consensus       109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~  181 (280)
T PRK09687        109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF  181 (280)
T ss_pred             HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence            4555555444321     223333333322   3355566667777777776 4556666665553   35556666666


Q ss_pred             HHHhcC-ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 016681          242 RLCECG-NAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLE  320 (384)
Q Consensus       242 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  320 (384)
                      ++.+.+ +...+...+..+..   .++..+-...+.++.+.++. .+...+-+..+.+   +  .....+.++...|.. 
T Consensus       182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-  251 (280)
T PRK09687        182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-  251 (280)
T ss_pred             HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence            666653 24456666666664   35777777888888888874 5555555555543   2  234677888888885 


Q ss_pred             HHHHHHHHHhhCCCCCCHhHHHHHHHHHh
Q 016681          321 EADKYFKIMKSHSLVPGVDIYESLVGIHL  349 (384)
Q Consensus       321 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  349 (384)
                      +|...+..+.+..  ||..+-...+.++.
T Consensus       252 ~a~p~L~~l~~~~--~d~~v~~~a~~a~~  278 (280)
T PRK09687        252 TLLPVLDTLLYKF--DDNEIITKAIDKLK  278 (280)
T ss_pred             hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence            6888888877643  36666555555553

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=86.64  E-value=31  Score=33.13  Aligned_cols=223  Identities=14%  Similarity=0.047  Sum_probs=118.8

Q ss_pred             HHhhcchHHHHHHHHHHHHcCCCCCH----H---HHHHHHH-HHHhcCChHHHHHHHHHHHHc----CCCCChHHHHHHH
Q 016681          103 IIQEERIEEGMVLLKRMLRKNMIHDT----I---AYSLIVY-AKVKMRNLESALVVYEEMLKR----GFSANSFVYTTFI  170 (384)
Q Consensus       103 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~  170 (384)
                      .....++++|..++.++...-..|+.    .   .++.+-. .....|+++.+.++-+.....    -..+....+..+.
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            34567889999998887654222221    1   2333221 234568889999888777654    2334556677777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH---HHH--HHHHhcCc--hHHHHHHHHHHHhC---CCC---CChhhHH
Q 016681          171 GAYCEYGKIEEANCLMQEMENAGLKPYDETFN---LLI--EGCAKAKR--IEESLSYCEQMMSR---KLL---PSCSAFN  237 (384)
Q Consensus       171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~--~~~~~~~~--~~~a~~~~~~~~~~---~~~---~~~~~~~  237 (384)
                      .+..-.|++++|..+..+..+..-.-+...+.   .+.  ..+...|+  ..+....+......   ...   +-..++.
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            88888999999999988776542223333332   222  22344552  22223333322221   111   1223444


Q ss_pred             HHHHHHHhcCChHHHHHHH----HHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh----hHH
Q 016681          238 EMIRRLCECGNAKQANGML----TLALDKGFSPNEITY--SHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP----AYT  307 (384)
Q Consensus       238 ~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~  307 (384)
                      .+..++.+   .+.+..-.    .--......|-....  ..|+......|+.++|...++++......++..    +-.
T Consensus       585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~  661 (894)
T COG2909         585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA  661 (894)
T ss_pred             HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence            44555544   33332222    222222222222222  356777788999999999999887654333222    222


Q ss_pred             HHHH--HHHhcCChHHHHHHHHH
Q 016681          308 SLIS--SLCQCGKLEEADKYFKI  328 (384)
Q Consensus       308 ~l~~--~~~~~g~~~~a~~~~~~  328 (384)
                      ..+.  .....|+.+.+.....+
T Consensus       662 ~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         662 YKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHhhHHHhcccCCHHHHHHHHHh
Confidence            2222  22356777777776655

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=86.54  E-value=7.5  Score=25.91  Aligned_cols=79  Identities=15%  Similarity=0.063  Sum_probs=40.5

Q ss_pred             ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHH
Q 016681           38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLK  117 (384)
Q Consensus        38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  117 (384)
                      ..++|..+-+.+...+-. ...+-..-+..+...|++++|..+.+..    ..||...|-.|-.  .+.|--+.+..-+.
T Consensus        20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~   92 (115)
T TIGR02508        20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN   92 (115)
T ss_pred             HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence            345565555555443211 2222222334556667777776665554    2566666655533  24455555555555


Q ss_pred             HHHHcC
Q 016681          118 RMLRKN  123 (384)
Q Consensus       118 ~~~~~~  123 (384)
                      +|...|
T Consensus        93 rla~sg   98 (115)
T TIGR02508        93 RLAASG   98 (115)
T ss_pred             HHHhCC
Confidence            565555

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.96  E-value=1.2  Score=21.00  Aligned_cols=19  Identities=26%  Similarity=0.331  Sum_probs=9.5

Q ss_pred             HHHHHHhccCCHHHHHHHH
Q 016681          343 SLVGIHLEKGNKAKALHLC  361 (384)
Q Consensus       343 ~l~~~~~~~g~~~~a~~~~  361 (384)
                      .+...+...|++++|..++
T Consensus         6 ~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    6 ALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHcCCHHHHHHHH
Confidence            3444455555555555544

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.93  E-value=32  Score=32.54  Aligned_cols=71  Identities=18%  Similarity=0.293  Sum_probs=33.8

Q ss_pred             HHccCChHHHHHHHHHHHhCCCCC---cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 016681           68 LCKGGQLQTYVDMLDRIHGKRCSP---MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNL  144 (384)
Q Consensus        68 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  144 (384)
                      +.+.+.+++|+.+.+.....  .|   ....+...+..+...|++++|-...-.|...    +..-|...+..+...++.
T Consensus       366 ll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l  439 (846)
T KOG2066|consen  366 LLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQL  439 (846)
T ss_pred             HHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccccc
Confidence            34445555555554443322  22   2334455555555666666665555555443    333444444444444443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=85.92  E-value=3.2  Score=34.56  Aligned_cols=51  Identities=14%  Similarity=0.073  Sum_probs=25.8

Q ss_pred             HhhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 016681           33 VTKSDRNDLVWRIYQHMLENIRYP-NEATIRTLISALCKGGQLQTYVDMLDRIH   85 (384)
Q Consensus        33 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~   85 (384)
                      |.++|.+++|++.|......  .| |.+++..-..+|.+...+..|..-.....
T Consensus       107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai  158 (536)
T KOG4648|consen  107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI  158 (536)
T ss_pred             hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence            45555555555555554442  23 45555555555555555555444444433

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.72  E-value=2.2  Score=23.50  Aligned_cols=20  Identities=20%  Similarity=0.262  Sum_probs=8.3

Q ss_pred             HHHHhhcchHHHHHHHHHHH
Q 016681          101 LRIIQEERIEEGMVLLKRML  120 (384)
Q Consensus       101 ~~~~~~~~~~~a~~~~~~~~  120 (384)
                      .+|...|+.+.|.++++++.
T Consensus         7 ~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         7 RAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHcCChHHHHHHHHHHH
Confidence            33444444444444444443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=85.69  E-value=18  Score=29.49  Aligned_cols=125  Identities=8%  Similarity=-0.016  Sum_probs=68.8

Q ss_pred             HHHHHHHhhcCChhHHHHHHHHHHhcC-----CC-CC-------HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH
Q 016681           27 NTLIHVVTKSDRNDLVWRIYQHMLENI-----RY-PN-------EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV   93 (384)
Q Consensus        27 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   93 (384)
                      ....+.+.-..++..|++..++-.+.=     .. |+       ......=|.+++..++|.+++.+.-+.-+..-+-..
T Consensus        39 e~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPp  118 (309)
T PF07163_consen   39 EEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPP  118 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH
Confidence            334444555677888777776655431     11 11       112234467777777777777766554433212223


Q ss_pred             HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcCChHHHHHHH
Q 016681           94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV-----KMRNLESALVVY  151 (384)
Q Consensus        94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~~  151 (384)
                      .+...-|-.|.+.+++..+.++-....+..-.-+...|..++..|.     -.|.+++|+++.
T Consensus       119 kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  119 KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence            4444455567777777777777766665432223334555554443     357777776665

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=85.54  E-value=1.6  Score=21.69  Aligned_cols=27  Identities=11%  Similarity=0.210  Sum_probs=19.7

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          341 YESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       341 ~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      +-.+..++.+.|++++|.+.|+++++.
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            344566777788888888888887753

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=85.07  E-value=4.6  Score=33.69  Aligned_cols=90  Identities=13%  Similarity=0.088  Sum_probs=60.7

Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 016681           66 SALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE  145 (384)
Q Consensus        66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  145 (384)
                      .-|.++|.+++|++.|....... +-|..++..-..+|.+...+..|+.-....+..+-. -...|..-+.+-...|...
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHH
Confidence            45678899999999999877664 558888888899999999998888777766654311 1223333333333445556


Q ss_pred             HHHHHHHHHHHc
Q 016681          146 SALVVYEEMLKR  157 (384)
Q Consensus       146 ~a~~~~~~~~~~  157 (384)
                      +|.+=++..+..
T Consensus       183 EAKkD~E~vL~L  194 (536)
T KOG4648|consen  183 EAKKDCETVLAL  194 (536)
T ss_pred             HHHHhHHHHHhh
Confidence            666555555543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.72  E-value=16  Score=28.02  Aligned_cols=89  Identities=16%  Similarity=0.092  Sum_probs=49.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 016681          240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYS-----HLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLC  314 (384)
Q Consensus       240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  314 (384)
                      ...+...+++++|+..++.....   |....+.     .|.+.....|.+++|+..++...+.++.  ......-.+.+.
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill  170 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL  170 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence            34556667777777777666543   1222222     2334455667777777777665554321  122233345566


Q ss_pred             hcCChHHHHHHHHHHhhCC
Q 016681          315 QCGKLEEADKYFKIMKSHS  333 (384)
Q Consensus       315 ~~g~~~~a~~~~~~~~~~~  333 (384)
                      ..|+-++|+.-|+...+.+
T Consensus       171 ~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         171 AKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HcCchHHHHHHHHHHHHcc
Confidence            6777777777777666654

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=84.14  E-value=31  Score=30.92  Aligned_cols=164  Identities=12%  Similarity=0.068  Sum_probs=69.5

Q ss_pred             cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 016681           92 MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIG  171 (384)
Q Consensus        92 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  171 (384)
                      |-....+++..+..+....-+..+..+|..-|-  +...|..++.+|... ..+.-..+++++.+..+. |...-..|..
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence            333444455555555555555555555555432  344555555555554 444445555555544332 2222222222


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHhcCchHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHh
Q 016681          172 AYCEYGKIEEANCLMQEMENAGLKP-----YDETFNLLIEGCAKAKRIEESLSYCEQMMSR-KLLPSCSAFNEMIRRLCE  245 (384)
Q Consensus       172 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~  245 (384)
                      .|- .++.+.+...|.++...=++.     -...|..+....  ..+.+..+.+...+... |...-...+..+-.-|..
T Consensus       141 ~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            222 255555555555444322110     001222222211  22344444444444332 211122233333344555


Q ss_pred             cCChHHHHHHHHHHHhc
Q 016681          246 CGNAKQANGMLTLALDK  262 (384)
Q Consensus       246 ~~~~~~a~~~~~~~~~~  262 (384)
                      ..++++|.+++..+.+.
T Consensus       218 ~eN~~eai~Ilk~il~~  234 (711)
T COG1747         218 NENWTEAIRILKHILEH  234 (711)
T ss_pred             ccCHHHHHHHHHHHhhh
Confidence            55555555555555544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=83.77  E-value=3.8  Score=20.52  Aligned_cols=25  Identities=20%  Similarity=0.070  Sum_probs=11.2

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHH
Q 016681           96 NTSLILRIIQEERIEEGMVLLKRML  120 (384)
Q Consensus        96 ~~~l~~~~~~~~~~~~a~~~~~~~~  120 (384)
                      |..+...+...|++++|.+.|++..
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~   28 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3334444444444444444444443

...

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.75  E-value=18  Score=32.94  Aligned_cols=134  Identities=14%  Similarity=0.048  Sum_probs=96.1

Q ss_pred             hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 016681           23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR  102 (384)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  102 (384)
                      ...-+.+++.+.++|-.++|+++-         +|+.-.   .....+.|+++.|.++..+.      .+..-|..|.++
T Consensus       614 k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~  675 (794)
T KOG0276|consen  614 KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDA  675 (794)
T ss_pred             hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHH
Confidence            345667788888888888877653         233222   23345789999998887653      457789999999


Q ss_pred             HHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Q 016681          103 IIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEA  182 (384)
Q Consensus       103 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  182 (384)
                      ....+++..|.+.|.+...         |..|+-.+...|+.+....+-....+.|.. |     ...-+|...|+++++
T Consensus       676 al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C  740 (794)
T KOG0276|consen  676 ALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEEC  740 (794)
T ss_pred             HhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHH
Confidence            9999999999999887754         445666777788887777776676666542 2     334456778999999


Q ss_pred             HHHHHHH
Q 016681          183 NCLMQEM  189 (384)
Q Consensus       183 ~~~~~~~  189 (384)
                      .+++..-
T Consensus       741 ~~lLi~t  747 (794)
T KOG0276|consen  741 LELLIST  747 (794)
T ss_pred             HHHHHhc
Confidence            9887654

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.93  E-value=25  Score=28.93  Aligned_cols=69  Identities=14%  Similarity=0.117  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh-----CCCCCCcc
Q 016681          305 AYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS-----EGLKPSTS  374 (384)
Q Consensus       305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~  374 (384)
                      +++.....|..+|.+.+|.++.++....++ .+...|..++..+...|+--.|.+-++++.+     .|+..|.+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds  354 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS  354 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence            445566788899999999999999888653 3677788889999999997777777766542     36665544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.68  E-value=16  Score=26.57  Aligned_cols=51  Identities=10%  Similarity=0.125  Sum_probs=24.0

Q ss_pred             cCChHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681          141 MRNLESALVVYEEMLKRGFS-ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG  193 (384)
Q Consensus       141 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  193 (384)
                      .++.+++..+++.+.-..+. +...++...  .+...|+|++|..+|+++.+.+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence            55555555555555433111 122222222  2345566666666666655543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.57  E-value=45  Score=31.62  Aligned_cols=95  Identities=15%  Similarity=0.090  Sum_probs=50.5

Q ss_pred             cchHHHHHHHHHHHhcCCCC---chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSL---SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYV   78 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   78 (384)
                      +.+++|++.-+.....  .|   ....+...+..+.-.|++++|-...-.|...    +..-|..-+..+...++...  
T Consensus       370 k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~--  441 (846)
T KOG2066|consen  370 KKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTD--  441 (846)
T ss_pred             hHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccch--
Confidence            3456666655544332  23   3345666677777777777777666666543    45555555555555554433  


Q ss_pred             HHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681           79 DMLDRIHGKRCSPMVIVNTSLILRIIQ  105 (384)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~  105 (384)
                       ++.-++......+...|..++..+..
T Consensus       442 -Ia~~lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  442 -IAPYLPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             -hhccCCCCCcccCchHHHHHHHHHHH
Confidence             22222222222345666666666555

>PHA02875 ankyrin repeat protein; Provisional

Probab=82.27  E-value=35  Score=30.14  Aligned_cols=212  Identities=11%  Similarity=0.068  Sum_probs=103.7

Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH--HHHHHHHHHHhcC
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMIHDTIA--YSLIVYAKVKMRNLESALVVYEEMLKRGFSANSF--VYTTFIGAYCEYG  177 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~  177 (384)
                      ..+..|+.+.    ++.+.+.|..|+...  ....+..++..|+.+-    .+.+.+.|..|+..  .....+...+..|
T Consensus         8 ~A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          8 DAILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEG   79 (413)
T ss_pred             HHHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence            3445666644    455556777765433  2334556667777654    44455666555432  1233456666788


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCChHHHHHH
Q 016681          178 KIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSA--FNEMIRRLCECGNAKQANGM  255 (384)
Q Consensus       178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~  255 (384)
                      +.+.+..+++.-....-..+..-. +.+...+..|+.+    +++.+.+.|..|+...  -...+...+..|+.+-+..+
T Consensus        80 ~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L  154 (413)
T PHA02875         80 DVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL  154 (413)
T ss_pred             CHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            887766555431111001111112 2333344556654    4445555565544221  12233444566776544444


Q ss_pred             HHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh---HHHHHHHHHhcCChHHHHHHHHHH
Q 016681          256 LTLALDKGFSPN---EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPA---YTSLISSLCQCGKLEEADKYFKIM  329 (384)
Q Consensus       256 ~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~  329 (384)
                          .+.|..++   ..-.+.+.. .+..|+.+-    .+.+.+.|..++...   ...++...+..|+.+    +.+.+
T Consensus       155 ----l~~g~~~~~~d~~g~TpL~~-A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~L  221 (413)
T PHA02875        155 ----IDHKACLDIEDCCGCTPLII-AMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLF  221 (413)
T ss_pred             ----HhcCCCCCCCCCCCCCHHHH-HHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHH
Confidence                44454333   223333333 345566543    344555665555432   124444445566654    45555


Q ss_pred             hhCCCCCCHh
Q 016681          330 KSHSLVPGVD  339 (384)
Q Consensus       330 ~~~~~~~~~~  339 (384)
                      .+.|..++..
T Consensus       222 l~~gad~n~~  231 (413)
T PHA02875        222 IKRGADCNIM  231 (413)
T ss_pred             HHCCcCcchH
Confidence            6677776643

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=82.06  E-value=6.9  Score=27.33  Aligned_cols=47  Identities=13%  Similarity=0.142  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681          286 EVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH  332 (384)
Q Consensus       286 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  332 (384)
                      +..+-++......+.|++.....-+++|.+.+++..|.++|+-++.+
T Consensus        67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K  113 (149)
T KOG4077|consen   67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK  113 (149)
T ss_pred             HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            56666777777788899999999999999999999999999988764

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.04  E-value=27  Score=28.73  Aligned_cols=70  Identities=16%  Similarity=0.130  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHhH
Q 016681          270 TYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS-----HSLVPGVDI  340 (384)
Q Consensus       270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~  340 (384)
                      +++.....|..+|.+.+|.++.++....+ +.+...+-.|+..+...|+--.+.+-++++.+     .|+..+-..
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi  355 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI  355 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence            44556678889999999999999998875 66788888999999999998888887777643     466554443

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.99  E-value=58  Score=31.83  Aligned_cols=38  Identities=21%  Similarity=0.258  Sum_probs=24.3

Q ss_pred             HHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 016681          208 CAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE  245 (384)
Q Consensus       208 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  245 (384)
                      |......+-+..+++.+....-.++....+.++..|+.
T Consensus       601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e  638 (877)
T KOG2063|consen  601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE  638 (877)
T ss_pred             HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence            44556667777777777666555566666666666654

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=80.65  E-value=51  Score=31.02  Aligned_cols=48  Identities=15%  Similarity=0.091  Sum_probs=29.6

Q ss_pred             hcCChHHHHHHHHHHhhCCC-CC-----CHhHHHHHHHH--HhccCCHHHHHHHHH
Q 016681          315 QCGKLEEADKYFKIMKSHSL-VP-----GVDIYESLVGI--HLEKGNKAKALHLCE  362 (384)
Q Consensus       315 ~~g~~~~a~~~~~~~~~~~~-~~-----~~~~~~~l~~~--~~~~g~~~~a~~~~~  362 (384)
                      -.+++..|...++.+.+..- .|     ....+..++.+  +-..|+.+.|...|.
T Consensus       373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            46788888888888876311 11     11223333333  445788999999997

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=80.63  E-value=16  Score=25.62  Aligned_cols=45  Identities=11%  Similarity=0.080  Sum_probs=26.4

Q ss_pred             HHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681           78 VDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  122 (384)
                      .+-+..+...++.|++.+....++++.+.+++..|..+|+-++.+
T Consensus        69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K  113 (149)
T KOG4077|consen   69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK  113 (149)
T ss_pred             HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            334444555555666666666666666666666666666665543

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=80.51  E-value=30  Score=28.33  Aligned_cols=33  Identities=18%  Similarity=0.126  Sum_probs=21.6

Q ss_pred             HHHHHHhccCCHHHHHHHHHH----HHhCCCCCCccc
Q 016681          343 SLVGIHLEKGNKAKALHLCEE----MVSEGLKPSTSY  375 (384)
Q Consensus       343 ~l~~~~~~~g~~~~a~~~~~~----~~~~~~~p~~~~  375 (384)
                      .++..+.+.|.+.+|+.+.+.    +.+.+-+|+..+
T Consensus       130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~  166 (421)
T COG5159         130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT  166 (421)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence            467778889999888876544    444455555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-13
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-13
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-12
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 71.0 bits (172), Expect = 2e-13
 Identities = 24/207 (11%), Positives = 67/207 (32%), Gaps = 6/207 (2%)

Query: 91  PMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNL-ESALV 149
             ++      L +  E+             + +     +              L    LV
Sbjct: 96  ARLLQEAPGKLSLDVEQAPSG----QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151

Query: 150 VYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCA 209
           V+    ++       +Y   +  +   G  +E   ++  +++AGL P   ++   ++   
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211

Query: 210 KAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQA-NGMLTLALDKGFSPNE 268
           +  +   ++  C + MS++ L   + F  ++    +     +A + +          P  
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271

Query: 269 ITYSHLIGGYAKEGEIQEVLKLYYEME 295
           +  S L+     +       KL+  ++
Sbjct: 272 VNTSKLLRDVYAKDGRVSYPKLHLPLK 298

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 70.2 bits (170), Expect = 3e-13
 Identities = 24/201 (11%), Positives = 62/201 (30%), Gaps = 4/201 (1%)

Query: 182 ANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241
           A CL      A   P++E    L++       ++   +   Q    +L           +
Sbjct: 76  AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135

Query: 242 RLCECGNAKQANGMLTL---ALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKS 298
                     A+ +L +      K        Y+ ++ G+A++G  +E++ + + ++   
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195

Query: 299 ISPTLPAYTSLISSLCQCGKLEEA-DKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKA 357
           ++P L +Y + +  + +  +     ++  + M    L         L+            
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255

Query: 358 LHLCEEMVSEGLKPSTSYLCS 378
             +          P       
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSK 276

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 67.1 bits (162), Expect = 4e-12
 Identities = 24/232 (10%), Positives = 71/232 (30%), Gaps = 4/232 (1%)

Query: 137 AKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKP 196
            + ++ + + A  + +   +   S         +        ++       +   A L  
Sbjct: 66  VEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSG 125

Query: 197 YDETFNLLIEGCAKAKRIEES---LSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQAN 253
             +      + C    ++  +   L        ++ L +   +N ++      G  K+  
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185

Query: 254 GMLTLALDKGFSPNEITYSHLIGGYAKEGEIQE-VLKLYYEMEYKSISPTLPAYTSLISS 312
            +L +  D G +P+ ++Y+  +    ++ +    + +   +M  + +         L+S 
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245

Query: 313 LCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEM 364
             +   L+   K          +P       L+     K  +     L   +
Sbjct: 246 EDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 41.7 bits (96), Expect = 3e-04
 Identities = 15/249 (6%), Positives = 64/249 (25%), Gaps = 9/249 (3%)

Query: 4   FEVAFDVCRYLEQR---GFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEAT 60
             +A  +      +      L+L  +N ++    +      +  +   + +    P+  +
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202

Query: 61  IRTLISALCKGGQ-LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRM 119
               +  + +  Q   T    L+++  +      +    L+    +   ++    +    
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262

Query: 120 LRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVY-----TTFIGAYC 174
                +   +  S ++          S   ++  +          ++        + +  
Sbjct: 263 SLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVE 322

Query: 175 EYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCS 234
           +     +     ++        +++     +         E             LL    
Sbjct: 323 KPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDERE 382

Query: 235 AFNEMIRRL 243
               +++ L
Sbjct: 383 VVRMLLQVL 391

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 72/503 (14%), Positives = 145/503 (28%), Gaps = 172/503 (34%)

Query: 12  RYLEQRGFSLSLISFNTLIHVVTKSD--RNDLVWRIYQHMLENIRYPNEATI-------- 61
            Y+EQR        +N    V  K +  R     ++ +  L  +R P +  +        
Sbjct: 111 MYIEQRD-----RLYND-NQVFAKYNVSRLQPYLKL-RQALLELR-PAKNVLIDGVLGSG 162

Query: 62  -RTLISALCKGGQLQTYVDMLDRIH----GKRCSPMVIVN--TSLILRIIQE-------- 106
              +   +C   ++Q    M  +I         SP  ++     L+ +I           
Sbjct: 163 KTWVALDVCLSYKVQCK--MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 107 ERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGF------- 159
             I+  +  ++  LR+ +        L+V     + N+++A           F       
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLV-----LLNVQNAKAW------NAFNLSCKIL 269

Query: 160 --SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL-------KPYD------ETFNLL 204
             +    V      A   +  ++  +  +   E   L       +P D       T    
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 205 IEGCAKAKR--------------------IEESLSYCEQMMSRKLLPSCSAF-------- 236
           +   A++ R                    IE SL+  E    RK+    S F        
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 237 -------------------NEMIRR-LCECGNAKQANGMLTLALD--------------- 261
                              N++ +  L E    +    + ++ L+               
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 262 -------KGFSPNEIT--------YSHLIGGY----AKEGEIQEVL-KLYYE---MEYKS 298
                  K F  +++         YSH+  G+     +  E   +   ++ +   +E K 
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

Query: 299 ISPTLP--AYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVG--IH-LEKGN 353
              +    A  S++++L Q   L+    Y  I  +         YE LV   +  L K  
Sbjct: 508 RHDSTAWNASGSILNTLQQ---LKFYKPY--ICDND------PKYERLVNAILDFLPKIE 556

Query: 354 KAKALHLCEEMVSEGLKPSTSYL 376
           +        +++   L      +
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAI 579

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 17/239 (7%)

Query: 127 DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLM 186
            +        A   +     A+     +   G   ++ +         E    ++A   +
Sbjct: 72  YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIE-----PMLERNLNKQAMSKL 126

Query: 187 QEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC 246
           +E         D       E     +  +E     E + S   + S     +        
Sbjct: 127 KEK----FGDIDTATATPTE--LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANY 180

Query: 247 GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE-GEIQEVLKLYYEMEYKSISPTLP- 304
             + +A+  L   L   +  +  +Y      + K     +E L    E E   +   L  
Sbjct: 181 DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE--KLKEKLAI 238

Query: 305 AYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEE 363
           +                A +  K  K+  L P V+ Y  +  I  ++ +  +  +  ++
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIK--KAIELFPRVNSYIYMALIMADRNDSTEYYNYFDK 295

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.96
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.93
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.92
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.91
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.91
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.9
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.9
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.88
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.88
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.87
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.87
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.86
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.86
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.85
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.84
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.83
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.81
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.81
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.8
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.79
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.78
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.78
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.77
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.77
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.77
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.74
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.74
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.74
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.73
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.73
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.72
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.72
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.72
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.72
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.72
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.72
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.71
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.71
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.71
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.71
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.67
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.66
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.65
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.65
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.64
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.64
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.64
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.63
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.63
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.63
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.62
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.62
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.6
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.6
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.6
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.55
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.55
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.55
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.55
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.53
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.52
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.52
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.51
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.48
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.48
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.48
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.45
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.45
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.43
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.43
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.39
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.38
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.33
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.3
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.3
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.28
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.27
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.26
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.26
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.25
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.25
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.24
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.24
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.24
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.21
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.2
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.2
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.19
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.18
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.17
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.17
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.17
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.16
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.14
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.14
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.13
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.12
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.11
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.1
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.08
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.03
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.98
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.97
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.94
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.93
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.93
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.92
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.92
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.92
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.91
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.9
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.88
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.87
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.87
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.87
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.86
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.85
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.85
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.85
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.84
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.84
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.84
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.82
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.82
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.82
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.82
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.81
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.8
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.78
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.78
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.78
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.77
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.74
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.73
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.73
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.72
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.69
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.68
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.67
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.67
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.64
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.64
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.61
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.6
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.59
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.59
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.58
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.58
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.55
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.55
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.54
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.54
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.54
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.53
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.53
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.52
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.5
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.47
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.45
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.43
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.42
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.4
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.38
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.38
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.37
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.35
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.35
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.33
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.33
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.32
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.31
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.29
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.25
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.23
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.21
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.19
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.16
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.15
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.13
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.0
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.0
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.99
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.96
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.94
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.93
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.93
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.9
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.83
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.82
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.69
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.58
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.53
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.33
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.2
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.17
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.15
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.06
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.02
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.98
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.98
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.97
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.95
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.94
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.93
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.91
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.89
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.72
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.69
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.61
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.57
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.55
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.51
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.5
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.41
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.14
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.86
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.86
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.82
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.9
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.74
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.43
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	94.43
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.37
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.09
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	93.88
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	93.26
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.09
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.08
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.92
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	92.56
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	92.51
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	92.31
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	91.94
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	91.92
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	91.8
2p58_C	116	Putative type III secretion protein YSCG; type III	91.71
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	90.95
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.91
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	90.67
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	89.71
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	88.88
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	88.6
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	87.46
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	85.33
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	84.97
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	84.23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	82.98

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-35  Score=270.04  Aligned_cols=357  Identities=10%  Similarity=-0.055  Sum_probs=185.1

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML   81 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   81 (384)
                      |++++|+++|+.+...  .|+..++..++.+|.+.|++++|..+|+.+...  .++..+++.++.+|.+.|++++|.++|
T Consensus        98 g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~  173 (597)
T 2xpi_A           98 QQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLL  173 (597)
T ss_dssp             TCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHH
Confidence            5677777777777643  356666777777777777777777777766432  456667777777777777777777776


Q ss_pred             HHHHhC---------------CCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC----------------------
Q 016681           82 DRIHGK---------------RCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNM----------------------  124 (384)
Q Consensus        82 ~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------  124 (384)
                      +++...               +.+++..+|+.++.+|.+.|++++|.++|+++.+.+.                      
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~  253 (597)
T 2xpi_A          174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWD  253 (597)
T ss_dssp             CSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHH
T ss_pred             hccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHH
Confidence            642211               1123466667777777777777777776666654321                      


Q ss_pred             ------------------------------------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016681          125 ------------------------------------------------IHDTIAYSLIVYAKVKMRNLESALVVYEEMLK  156 (384)
Q Consensus       125 ------------------------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  156 (384)
                                                                      +++..+++.++..+.+.|++++|.++|+++.+
T Consensus       254 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  333 (597)
T 2xpi_A          254 LVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE  333 (597)
T ss_dssp             HHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence                                                            14556666666667777777777777776665


Q ss_pred             cCCC---------------------------------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 016681          157 RGFS---------------------------------ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNL  203 (384)
Q Consensus       157 ~~~~---------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  203 (384)
                      .+..                                 .+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.
T Consensus       334 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~  412 (597)
T 2xpi_A          334 IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIG  412 (597)
T ss_dssp             HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            4322                                 123334444444444444444444444443322 122334444


Q ss_pred             HHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 016681          204 LIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGE  283 (384)
Q Consensus       204 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  283 (384)
                      ++..|.+.|++++|.++|+++.+.++. +..++..++.+|.+.|++++|..+|+.+.+..+ .+..+|+.++..|.+.|+
T Consensus       413 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~  490 (597)
T 2xpi_A          413 FAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSD  490 (597)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCC
Confidence            444444444444444444444433221 334444444444444444444444444443322 134444444444444444


Q ss_pred             HHHHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHH
Q 016681          284 IQEVLKLYYEMEYK----SISPT--LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKA  357 (384)
Q Consensus       284 ~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  357 (384)
                      +++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.++|+++.+.++. +..+|..+..+|.+.|++++|
T Consensus       491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A  569 (597)
T 2xpi_A          491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLA  569 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHH
Confidence            44444444444333    33333  334444444444444444444444444443211 344444444444444444444


Q ss_pred             HHHHHHHHh
Q 016681          358 LHLCEEMVS  366 (384)
Q Consensus       358 ~~~~~~~~~  366 (384)
                      .+.++++.+
T Consensus       570 ~~~~~~~l~  578 (597)
T 2xpi_A          570 ITHLHESLA  578 (597)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            444444443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.3e-35  Score=265.95  Aligned_cols=342  Identities=10%  Similarity=-0.024  Sum_probs=275.1

Q ss_pred             CcchHHHHHHHHHHHh-c--------------CCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCC----------
Q 016681            1 MRLFEVAFDVCRYLEQ-R--------------GFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRY----------   55 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~-~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------   55 (384)
                      .|++++|+++|+++.. .              |.++++.+|+.++..|.+.|++++|.++|+++.+.+..          
T Consensus       163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  242 (597)
T 2xpi_A          163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVS  242 (597)
T ss_dssp             TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence            3677777777774221 1              22345777788888888888888888888877764321          


Q ss_pred             ------------------------------------------------------------CCHHHHHHHHHHHHccCChH
Q 016681           56 ------------------------------------------------------------PNEATIRTLISALCKGGQLQ   75 (384)
Q Consensus        56 ------------------------------------------------------------~~~~~~~~l~~~~~~~~~~~   75 (384)
                                                                                  ++..+++.++..+.+.|+++
T Consensus       243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  322 (597)
T 2xpi_A          243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI  322 (597)
T ss_dssp             TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHH
T ss_pred             hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHH
Confidence                                                                        44555666666666667777


Q ss_pred             HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681           76 TYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEML  155 (384)
Q Consensus        76 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  155 (384)
                      +|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..+++.++..|.+.|++++|.++|+++.
T Consensus       323 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  400 (597)
T 2xpi_A          323 DVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSS  400 (597)
T ss_dssp             HHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            7777776666554 4456666666667777777777777777666543 3478889999999999999999999999998


Q ss_pred             HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhh
Q 016681          156 KRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSA  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  235 (384)
                      +... .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..+. +..+
T Consensus       401 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~  477 (597)
T 2xpi_A          401 TMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLL  477 (597)
T ss_dssp             HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHH
T ss_pred             HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHH
Confidence            8633 368899999999999999999999999998875 467789999999999999999999999999987654 7889


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 016681          236 FNEMIRRLCECGNAKQANGMLTLALDK----GFSPN--EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSL  309 (384)
Q Consensus       236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  309 (384)
                      |..++..+.+.|++++|..+|+.+.+.    +..|+  ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..+
T Consensus       478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l  556 (597)
T 2xpi_A          478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAI  556 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence            999999999999999999999999876    66777  7899999999999999999999999999876 5578999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHh
Q 016681          310 ISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHL  349 (384)
Q Consensus       310 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  349 (384)
                      ..+|.+.|++++|.+.|+++.+..+. +...+..+...|.
T Consensus       557 ~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~  595 (597)
T 2xpi_A          557 ALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence            99999999999999999999987544 5677777766553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=3.3e-34  Score=251.13  Aligned_cols=206  Identities=11%  Similarity=0.091  Sum_probs=180.7

Q ss_pred             HHHHHHHHHHhcCCCCchh-hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---------hH
Q 016681            6 VAFDVCRYLEQRGFSLSLI-SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ---------LQ   75 (384)
Q Consensus         6 ~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~   75 (384)
                      .+..+.+.+.+.+..+++. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+.         ++
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~   87 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS   87 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence            4556667777777665554 5889999999999999999999999999999999999999999987664         68


Q ss_pred             HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681           76 TYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEML  155 (384)
Q Consensus        76 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  155 (384)
                      .|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus        88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A           88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 016681          156 KRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKA  211 (384)
Q Consensus       156 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  211 (384)
                      +.|+.||..||++||.+|++.|++++|.+++++|.+.+..|+..||+.++..|...
T Consensus       168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999988764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=7.7e-31  Score=226.14  Aligned_cols=360  Identities=13%  Similarity=0.059  Sum_probs=318.5

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML   81 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   81 (384)
                      |++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|...|
T Consensus        13 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   90 (388)
T 1w3b_A           13 GDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHY   90 (388)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            78999999999998774 4467778888889999999999999999988864 357889999999999999999999999


Q ss_pred             HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681           82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA  161 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  161 (384)
                      +++.+.. +.+...|..+..++.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+++.+... .
T Consensus        91 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~  167 (388)
T 1w3b_A           91 RHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-N  167 (388)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-T
T ss_pred             HHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-C
Confidence            9998875 667788999999999999999999999999987543 566778888899999999999999999988743 3


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681          162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR  241 (384)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  241 (384)
                      +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+..+. +..++..+..
T Consensus       168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~  245 (388)
T 1w3b_A          168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLAC  245 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHH
Confidence            67889999999999999999999999999865 445678889999999999999999999999887644 6788999999


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 016681          242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEE  321 (384)
Q Consensus       242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  321 (384)
                      ++...|++++|...++.+.+..+. +..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus       246 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  323 (388)
T 1w3b_A          246 VYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEE  323 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999999987543 67889999999999999999999999999874 6678899999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 016681          322 ADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPST  373 (384)
Q Consensus       322 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~  373 (384)
                      |...++++.+..+. +..++..+...+.+.|++++|...++++.+.  .|+.
T Consensus       324 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~  372 (388)
T 1w3b_A          324 AVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTF  372 (388)
T ss_dssp             HHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTC
T ss_pred             HHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC
Confidence            99999999986433 6788999999999999999999999999864  4543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.2e-33  Score=247.69  Aligned_cols=203  Identities=11%  Similarity=0.153  Sum_probs=108.4

Q ss_pred             HHHHHHHHhCCCCCcH-HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------hHHH
Q 016681           78 VDMLDRIHGKRCSPMV-IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRN---------LESA  147 (384)
Q Consensus        78 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a  147 (384)
                      ..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+.         ++.|
T Consensus        10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A   89 (501)
T 4g26_A           10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG   89 (501)
T ss_dssp             --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred             HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence            3344444444433322 24555666666666666666666666666666666666666666655433         3455


Q ss_pred             HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681          148 LVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSR  227 (384)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  227 (384)
                      .++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus        90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~  169 (501)
T 4g26_A           90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES  169 (501)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 016681          228 KLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAK  280 (384)
Q Consensus       228 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  280 (384)
                      |+.||..+|+.+|.+|++.|+.++|.+++++|.+.+..|+..||+.++..|..
T Consensus       170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            55555555555555555555555555555555555555555555555555543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.3e-28  Score=212.23  Aligned_cols=342  Identities=16%  Similarity=0.076  Sum_probs=301.0

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      .|++++|...++...+.. +.+..+|..+...+.+.|++++|...|+++.+..+ .+..+|..+...+.+.|++++|.+.
T Consensus        46 ~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~  123 (388)
T 1w3b_A           46 CRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQA  123 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence            378899999999988764 56889999999999999999999999999998643 3567899999999999999999999


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS  160 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  160 (384)
                      |+++.+.+ +.+...+..+...+...|++++|.+.|+++.+.... +..+|..+...+.+.|++++|...|+++.+....
T Consensus       124 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  201 (388)
T 1w3b_A          124 YVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN  201 (388)
T ss_dssp             HHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            99998876 556778888999999999999999999999987543 6789999999999999999999999999987543


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 016681          161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI  240 (384)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  240 (384)
                       +...+..+...+...|++++|...+++..... +.+..++..+...+.+.|++++|...++++.+.++. +..++..+.
T Consensus       202 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~  278 (388)
T 1w3b_A          202 -FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLA  278 (388)
T ss_dssp             -CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence             67789999999999999999999999998765 345688999999999999999999999999987654 677899999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 016681          241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLE  320 (384)
Q Consensus       241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  320 (384)
                      ..+.+.|++++|...++.+.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|+++
T Consensus       279 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  356 (388)
T 1w3b_A          279 NALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQ  356 (388)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999874 4588999999999999999999999999998864 456788999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCHhHHHHHHHHHhccC
Q 016681          321 EADKYFKIMKSHSLVPGVDIYESLVGIHLEKG  352 (384)
Q Consensus       321 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  352 (384)
                      +|...|+++.+..+. +...|..+...+...|
T Consensus       357 ~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          357 EALMHYKEAIRISPT-FADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhCCC-CHHHHHhHHHHHHHcc
Confidence            999999999986543 5677777777766655

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.1e-26  Score=204.76  Aligned_cols=358  Identities=9%  Similarity=-0.047  Sum_probs=303.2

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      .|++++|++.|+.+.+..  |+..+|..+..++.+.|++++|...++.+.+.++ .+..++..+..++...|++++|...
T Consensus        19 ~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~   95 (514)
T 2gw1_A           19 NKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMFD   95 (514)
T ss_dssp             TSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            489999999999999875  6899999999999999999999999999998754 3678999999999999999999999


Q ss_pred             HHHHHhCCCCCc--------------------------------------------------------------------
Q 016681           81 LDRIHGKRCSPM--------------------------------------------------------------------   92 (384)
Q Consensus        81 ~~~~~~~~~~~~--------------------------------------------------------------------   92 (384)
                      |+++...+ +++                                                                    
T Consensus        96 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
T 2gw1_A           96 LSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE  174 (514)
T ss_dssp             HHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred             HHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence            99987765 221                                                                    


Q ss_pred             -----------HHhHHHHHHHHHh---hcchHHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHhcCChH
Q 016681           93 -----------VIVNTSLILRIIQ---EERIEEGMVLLKRMLR-----KNM--------IHDTIAYSLIVYAKVKMRNLE  145 (384)
Q Consensus        93 -----------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ll~~~~~~~~~~  145 (384)
                                 ...+......+..   .|++++|...++++.+     ...        +.+..++..+...+...|+++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (514)
T 2gw1_A          175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL  254 (514)
T ss_dssp             CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence                       2233333333333   8999999999999988     311        123567788888999999999


Q ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681          146 SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMM  225 (384)
Q Consensus       146 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  225 (384)
                      +|...++++.+....  ...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++..
T Consensus       255 ~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  331 (514)
T 2gw1_A          255 GAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAK  331 (514)
T ss_dssp             HHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            999999999887544  8888999999999999999999999998765 4566788999999999999999999999999


Q ss_pred             hCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC--
Q 016681          226 SRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS-PT--  302 (384)
Q Consensus       226 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--  302 (384)
                      +..+. +...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.... ++  
T Consensus       332 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  409 (514)
T 2gw1_A          332 ELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY  409 (514)
T ss_dssp             HTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred             HhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence            87655 677889999999999999999999999988643 36788999999999999999999999998765311 11  


Q ss_pred             --hhhHHHHHHHHHh---cCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681          303 --LPAYTSLISSLCQ---CGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       303 --~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  368 (384)
                        ..++..+...+..   .|++++|...++++.+..+. +...+..+...+...|++++|...++++.+..
T Consensus       410 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence              2388889999999   99999999999999886543 67888999999999999999999999998753

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.96  E-value=1.4e-25  Score=197.18  Aligned_cols=349  Identities=11%  Similarity=0.046  Sum_probs=281.3

Q ss_pred             HHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 016681            6 VAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIH   85 (384)
Q Consensus         6 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~   85 (384)
                      .+...|..+.... +.++..+..+...+.+.|++++|..+|+.+.+... .+..++..+...+...|++++|...|+++.
T Consensus        10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   87 (450)
T 2y4t_A           10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVI   87 (450)
T ss_dssp             --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3444555555443 55788899999999999999999999999998643 478899999999999999999999999999


Q ss_pred             hCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCH---HHHHHH------------HHHHHhcCChHHHHHH
Q 016681           86 GKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDT---IAYSLI------------VYAKVKMRNLESALVV  150 (384)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~  150 (384)
                      +.+ +.+..++..+...+.+.|++++|.+.|+++.+.... +.   ..+..+            ...+...|++++|...
T Consensus        88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~  165 (450)
T 2y4t_A           88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF  165 (450)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            876 667889999999999999999999999999886432 33   455544            4448899999999999


Q ss_pred             HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCC
Q 016681          151 YEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLL  230 (384)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  230 (384)
                      |+++.+... .+...+..+..+|.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+..+.
T Consensus       166 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  243 (450)
T 2y4t_A          166 LDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD  243 (450)
T ss_dssp             HHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999988743 378889999999999999999999999998764 456788999999999999999999999999876543


Q ss_pred             CChhhHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681          231 PSCSAFNEM------------IRRLCECGNAKQANGMLTLALDKGFSPN----EITYSHLIGGYAKEGEIQEVLKLYYEM  294 (384)
Q Consensus       231 ~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~  294 (384)
                       +...+..+            ...+...|++++|...++.+.+..+. +    ...+..+...+.+.|++++|...++++
T Consensus       244 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  321 (450)
T 2y4t_A          244 -HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEV  321 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             44445444            78899999999999999999886432 2    447888899999999999999999999


Q ss_pred             HhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHH------------HHhccC-----CHHHH
Q 016681          295 EYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVG------------IHLEKG-----NKAKA  357 (384)
Q Consensus       295 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~a  357 (384)
                      .+.. +.+..+|..+..+|...|++++|...++++.+..+. +...+..+..            .|...|     +.+++
T Consensus       322 ~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~  399 (450)
T 2y4t_A          322 LQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI  399 (450)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHH
T ss_pred             HHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHH
Confidence            8764 456789999999999999999999999999986544 5666666663            244444     55677


Q ss_pred             HHHHHHH
Q 016681          358 LHLCEEM  364 (384)
Q Consensus       358 ~~~~~~~  364 (384)
                      .+.++++
T Consensus       400 ~~~y~~~  406 (450)
T 2y4t_A          400 IKAYRKL  406 (450)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8878763

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.96  E-value=2.8e-24  Score=188.86  Aligned_cols=347  Identities=12%  Similarity=0.055  Sum_probs=277.0

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      .|++++|+++|+.+.+.. +.+..+|..+..++...|++++|...|+.+.+.+. .+..++..+...+.+.|++++|...
T Consensus        39 ~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~  116 (450)
T 2y4t_A           39 AGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDD  116 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            488999999999998864 45889999999999999999999999999998754 3688999999999999999999999


Q ss_pred             HHHHHhCCCCCcH---HhHHHH------------HHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 016681           81 LDRIHGKRCSPMV---IVNTSL------------ILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE  145 (384)
Q Consensus        81 ~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  145 (384)
                      |+++.... +.+.   ..+..+            ...+...|++++|.+.|+++.+.... +..++..+..++.+.|+++
T Consensus       117 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~  194 (450)
T 2y4t_A          117 FKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPR  194 (450)
T ss_dssp             HHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHH
Confidence            99999875 4455   666655            44488999999999999999987543 7888999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH------------HHHHHhcCc
Q 016681          146 SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLL------------IEGCAKAKR  213 (384)
Q Consensus       146 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~  213 (384)
                      +|.++|+++.+.. +.+..++..+..+|...|++++|...|+++.... +.+...+..+            ...+.+.|+
T Consensus       195 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  272 (450)
T 2y4t_A          195 KAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGR  272 (450)
T ss_dssp             GGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999998763 3378899999999999999999999999998754 2333444444            788999999


Q ss_pred             hHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 016681          214 IEESLSYCEQMMSRKLLPS----CSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLK  289 (384)
Q Consensus       214 ~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  289 (384)
                      +++|...++++.+..+. +    ...+..+..++.+.|++++|...++.+.+.. +.+...|..+..+|...|++++|..
T Consensus       273 ~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~  350 (450)
T 2y4t_A          273 YTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQ  350 (450)
T ss_dssp             HHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999999886433 2    3478888999999999999999999998764 3378999999999999999999999


Q ss_pred             HHHHHHhcCCCCChhhHHHHHHH------------HHhcC-----ChHHHHHHHHH-HhhCCC--CCCH-------hHHH
Q 016681          290 LYYEMEYKSISPTLPAYTSLISS------------LCQCG-----KLEEADKYFKI-MKSHSL--VPGV-------DIYE  342 (384)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~~~~~--~~~~-------~~~~  342 (384)
                      .++++.+.. +-+...+..+..+            |...|     +.+++.+.+++ ..+..+  .|+.       ..+.
T Consensus       351 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~  429 (450)
T 2y4t_A          351 DYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFI  429 (450)
T ss_dssp             HHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHH
Confidence            999999863 2344555555532            33333     55677777776 333221  1221       2455


Q ss_pred             HHHHHHhccCCHHH
Q 016681          343 SLVGIHLEKGNKAK  356 (384)
Q Consensus       343 ~l~~~~~~~g~~~~  356 (384)
                      .+..+|...|+.++
T Consensus       430 ~i~~ay~~L~d~~~  443 (450)
T 2y4t_A          430 DIAAAKEVLSDPEM  443 (450)
T ss_dssp             HHHHHHHHSSGGGG
T ss_pred             HHHHHHHHhCCHHH
Confidence            56666666555544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.94  E-value=2.1e-23  Score=187.56  Aligned_cols=359  Identities=12%  Similarity=0.045  Sum_probs=286.3

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      .|++++|++.|+.+.+.. +.++.+|..+..++.+.|++++|++.|+.+.+.++ .+..++..+...+...|++++|...
T Consensus        38 ~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~  115 (537)
T 3fp2_A           38 AKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANESLGNFTDAMFD  115 (537)
T ss_dssp             TTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence            478999999999998875 45889999999999999999999999999998754 3788899999999999999999999


Q ss_pred             HHHHHhCCCC------------------------------------CcHH------------------------------
Q 016681           81 LDRIHGKRCS------------------------------------PMVI------------------------------   94 (384)
Q Consensus        81 ~~~~~~~~~~------------------------------------~~~~------------------------------   94 (384)
                      |+.+....-.                                    |+..                              
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (537)
T 3fp2_A          116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL  195 (537)
T ss_dssp             HHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHH
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHH
Confidence            9644211100                                    0000                              


Q ss_pred             hHHHHHHHHH--------hhcchHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 016681           95 VNTSLILRII--------QEERIEEGMVLLKRMLRKNMIHDT-------IAYSLIVYAKVKMRNLESALVVYEEMLKRGF  159 (384)
Q Consensus        95 ~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  159 (384)
                      ....+...+.        ..|++++|..+++++.+.... +.       .++..+...+...|++++|...++.+.+.. 
T Consensus       196 ~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-  273 (537)
T 3fp2_A          196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH-  273 (537)
T ss_dssp             HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-
Confidence            1111111111        124788999999999876533 32       346667778889999999999999999874 


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681          160 SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM  239 (384)
Q Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  239 (384)
                       |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+..+. +...+..+
T Consensus       274 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l  350 (537)
T 3fp2_A          274 -PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQL  350 (537)
T ss_dssp             -CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHH
T ss_pred             -CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence             457888899999999999999999999998865 456788999999999999999999999999887654 57789999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCChhhHHHHHHHHH
Q 016681          240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSI-----SPTLPAYTSLISSLC  314 (384)
Q Consensus       240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~  314 (384)
                      ...+...|++++|...++.+.+..+ .+...+..+...+...|++++|...++++.+...     ......+..+...+.
T Consensus       351 a~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~  429 (537)
T 3fp2_A          351 ACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA  429 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999998753 3677899999999999999999999999876531     111122344456777


Q ss_pred             hc----------CChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681          315 QC----------GKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       315 ~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  368 (384)
                      ..          |++++|...|+++.+..+. +...+..+...+...|++++|.+.++++.+..
T Consensus       430 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          430 RQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             HHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            77          9999999999999986544 67889999999999999999999999998753

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.3e-24  Score=189.40  Aligned_cols=339  Identities=11%  Similarity=0.006  Sum_probs=286.3

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      .+..+......+.+.|++++|+..|+.+.+..  |+..++..+..++.+.|++++|...++++.+.+ +.+..++..+..
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~   81 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence            45667788899999999999999999999875  799999999999999999999999999999876 677889999999


Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCC-------------------------------------------------------
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMIH-------------------------------------------------------  126 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------------------------------  126 (384)
                      ++.+.|++++|...|+++...+...                                                       
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            9999999999999999988765311                                                       


Q ss_pred             -----------------------CHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCC--------CCChHHHH
Q 016681          127 -----------------------DTIAYSLIVYAKVK---MRNLESALVVYEEMLK-----RGF--------SANSFVYT  167 (384)
Q Consensus       127 -----------------------~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~  167 (384)
                                             +...+......+..   .|++++|...++++.+     ...        +.+...+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE  241 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence                                   12223333333443   7999999999999987     311        22356778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 016681          168 TFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECG  247 (384)
Q Consensus       168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  247 (384)
                      .+...+...|++++|...++++.+..  |+...+..+...+...|++++|...++++.+..+. +..++..+...+...|
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence            88899999999999999999998865  33788899999999999999999999999987654 6778999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 016681          248 NAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFK  327 (384)
Q Consensus       248 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  327 (384)
                      ++++|...++.+.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++
T Consensus       319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~  396 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD  396 (514)
T ss_dssp             CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999999987544 67889999999999999999999999998774 4467788899999999999999999999


Q ss_pred             HHhhCCCC-CC----HhHHHHHHHHHhc---cCCHHHHHHHHHHHHhCC
Q 016681          328 IMKSHSLV-PG----VDIYESLVGIHLE---KGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       328 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~  368 (384)
                      ++.+.... ++    ...+..+...+..   .|++++|...++++.+..
T Consensus       397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~  445 (514)
T 2gw1_A          397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD  445 (514)
T ss_dssp             HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence            98774322 11    3388899999999   999999999999998753

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.94  E-value=3.7e-22  Score=169.81  Aligned_cols=319  Identities=11%  Similarity=0.067  Sum_probs=226.0

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      ++..+..+...+...|++++|...|+.+.+..+ .+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            456777888888889999999999988887643 367788888888888999999999998888765 556788888888


Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCC--CCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMI--HDTIAYSLI------------VYAKVKMRNLESALVVYEEMLKRGFSANSFVYT  167 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  167 (384)
                      .+...|++++|...++++.+....  .+...+..+            ...+...|++++|.+.++++.+... .+...+.
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~  158 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE  158 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence            888999999999999988876430  133344433            4667777888888888888776633 3667777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHH----------
Q 016681          168 TFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFN----------  237 (384)
Q Consensus       168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------  237 (384)
                      .+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+..+. +...+.          
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~  236 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK  236 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHH
Confidence            77788888888888888888777654 445667777777778888888888888877765433 333222          


Q ss_pred             --HHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 016681          238 --EMIRRLCECGNAKQANGMLTLALDKGFSPNE----ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLIS  311 (384)
Q Consensus       238 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  311 (384)
                        .+...+...|++++|...++.+.+..+. +.    ..+..+...+...|++++|...+++..+.. +.+..++..+..
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~  314 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE  314 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence              2245567777777777777777765332 22    224445667777777777777777777653 345667777777


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 016681          312 SLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIH  348 (384)
Q Consensus       312 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  348 (384)
                      .+...|++++|...|+++.+..+. +...+..+..+.
T Consensus       315 ~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~  350 (359)
T 3ieg_A          315 AYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQ  350 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence            777777777777777777765433 445555554443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.93  E-value=1.1e-21  Score=166.88  Aligned_cols=308  Identities=12%  Similarity=0.025  Sum_probs=259.0

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016681           57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVY  136 (384)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  136 (384)
                      +...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence            45677888899999999999999999998876 667889999999999999999999999999987543 6788999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCC--CChHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 016681          137 AKVKMRNLESALVVYEEMLKRGFS--ANSFVYTTF------------IGAYCEYGKIEEANCLMQEMENAGLKPYDETFN  202 (384)
Q Consensus       137 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  202 (384)
                      .+...|++++|...++++.+....  .+...+..+            ...+...|++++|.+.++++.+.. +.+...+.
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  158 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE  158 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence            999999999999999999886330  244444444            578899999999999999998875 45678889


Q ss_pred             HHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH---------
Q 016681          203 LLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSH---------  273 (384)
Q Consensus       203 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------  273 (384)
                      .+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++.+.+..+. +...+..         
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~  236 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK  236 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHH
Confidence            9999999999999999999999987654 7889999999999999999999999999886433 4444432         


Q ss_pred             ---HHHHHHhcCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHH
Q 016681          274 ---LIGGYAKEGEIQEVLKLYYEMEYKSISPTL----PAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVG  346 (384)
Q Consensus       274 ---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  346 (384)
                         +...+.+.|++++|...++++.+.. +.+.    ..+..+...+...|++++|...+++..+..+. +...+..+..
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~  314 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAE  314 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence               3666889999999999999998864 2222    23455778899999999999999999986433 7889999999


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCCc
Q 016681          347 IHLEKGNKAKALHLCEEMVSEGLKPST  373 (384)
Q Consensus       347 ~~~~~g~~~~a~~~~~~~~~~~~~p~~  373 (384)
                      .+...|++++|...++++.+.  .|+.
T Consensus       315 ~~~~~g~~~~A~~~~~~a~~~--~p~~  339 (359)
T 3ieg_A          315 AYLIEEMYDEAIQDYEAAQEH--NEND  339 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTT--CTTC
T ss_pred             HHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence            999999999999999999975  3553

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.92  E-value=1.1e-21  Score=165.04  Aligned_cols=292  Identities=11%  Similarity=-0.005  Sum_probs=199.7

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016681           57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVY  136 (384)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  136 (384)
                      +...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.... +...+..+..
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~   98 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC   98 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence            44455555666666666777776666666554 445555556666666677777777777776665432 4556666666


Q ss_pred             HHHhcC-ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchH
Q 016681          137 AKVKMR-NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIE  215 (384)
Q Consensus       137 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  215 (384)
                      .+...| ++++|.+.|+++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence            677777 67777777777666532 245666677777777777777777777776654 233455666777777777777


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHhcCCHHHH
Q 016681          216 ESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKG--------FSPNEITYSHLIGGYAKEGEIQEV  287 (384)
Q Consensus       216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a  287 (384)
                      +|...+++..+..+. +...+..+...+...|++++|...++.+.+..        .+.....+..+...+...|++++|
T Consensus       177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  255 (330)
T 3hym_B          177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA  255 (330)
T ss_dssp             HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            777777777766543 56677777777788888888888877776531        133456788888888888888888


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHH-hccCCHH
Q 016681          288 LKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIH-LEKGNKA  355 (384)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~  355 (384)
                      ...+++..+.. +.+..++..+...+...|++++|...|+++.+..+. +...+..+..++ ...|+.+
T Consensus       256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCchh
Confidence            88888887764 346677888888888889999999888888876533 667777777776 4556543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.91  E-value=2.4e-21  Score=162.87  Aligned_cols=295  Identities=8%  Similarity=-0.066  Sum_probs=249.2

Q ss_pred             CCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHH
Q 016681           19 FSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTS   98 (384)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (384)
                      .+.++..+..+...+...|++++|.++|+.+.+... .+...+..++..+...|++++|...++++.+.. +.+...+..
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~   95 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA   95 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence            456788888999999999999999999999998744 355667778888899999999999999998876 667889999


Q ss_pred             HHHHHHhhc-chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 016681           99 LILRIIQEE-RIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYG  177 (384)
Q Consensus        99 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (384)
                      +...+...| ++++|.+.+++..+.... +...+..+...+...|++++|...++++.+.... +...+..+...+...|
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence            999999999 999999999999987543 6778999999999999999999999999887433 5677778999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCCh
Q 016681          178 KIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK--------LLPSCSAFNEMIRRLCECGNA  249 (384)
Q Consensus       178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~  249 (384)
                      ++++|...+++..+.. +.+...+..+...+...|++++|...+++..+..        .+....++..+..++...|++
T Consensus       174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            9999999999998865 4566889999999999999999999999987642        133467889999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCChH
Q 016681          250 KQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSL-CQCGKLE  320 (384)
Q Consensus       250 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~  320 (384)
                      ++|...++.+.+.... +...+..+...+.+.|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus       253 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          253 AEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence            9999999999987543 77889999999999999999999999998764 34666777777777 4555543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.91  E-value=2.4e-21  Score=174.06  Aligned_cols=338  Identities=12%  Similarity=0.051  Sum_probs=268.3

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      ....|..+...+.+.|++++|+..|+.+.+..+ .+...+..+..++.+.|++++|++.|+++.+.+ +.+...+..+..
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~  101 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence            456788889999999999999999999998754 478899999999999999999999999999876 678899999999


Q ss_pred             HHHhhcchHHHHHHHHHHHHcCC------------------------------------CCCHH----------------
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNM------------------------------------IHDTI----------------  129 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~------------------------------------~~~~~----------------  129 (384)
                      ++...|++++|.+.|+.+.....                                    .|+..                
T Consensus       102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS  181 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence            99999999999999964311110                                    01111                


Q ss_pred             --------------HHHHHHHHHH--------hcCChHHHHHHHHHHHHcCCCCC-------hHHHHHHHHHHHhcCCHH
Q 016681          130 --------------AYSLIVYAKV--------KMRNLESALVVYEEMLKRGFSAN-------SFVYTTFIGAYCEYGKIE  180 (384)
Q Consensus       130 --------------~~~~ll~~~~--------~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~  180 (384)
                                    ....+...+.        ..+++++|..+++++.+.... +       ..++..+...+...|+++
T Consensus       182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~  260 (537)
T 3fp2_A          182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLL  260 (537)
T ss_dssp             TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHH
Confidence                          1111111111        124788899999988876332 2       234666778889999999


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681          181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLAL  260 (384)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  260 (384)
                      +|...++.+.+..  |+...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++.+.
T Consensus       261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  337 (537)
T 3fp2_A          261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQ  337 (537)
T ss_dssp             HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            9999999998864  55788888999999999999999999999887654 67889999999999999999999999999


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-----
Q 016681          261 DKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLV-----  335 (384)
Q Consensus       261 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----  335 (384)
                      +..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+..+.     
T Consensus       338 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  415 (537)
T 3fp2_A          338 SLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH  415 (537)
T ss_dssp             HHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred             HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence            87543 67889999999999999999999999998875 456678899999999999999999999998763211     


Q ss_pred             CCHhHHHHHHHHHhcc----------CCHHHHHHHHHHHHhC
Q 016681          336 PGVDIYESLVGIHLEK----------GNKAKALHLCEEMVSE  367 (384)
Q Consensus       336 ~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~  367 (384)
                      .....+......+...          |++++|...++++.+.
T Consensus       416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  457 (537)
T 3fp2_A          416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL  457 (537)
T ss_dssp             STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence            1222244555667777          9999999999999875

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.90  E-value=4.2e-21  Score=164.04  Aligned_cols=290  Identities=11%  Similarity=-0.014  Sum_probs=219.1

Q ss_pred             ccCChHHHHH-HHHHHHhCCC---CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 016681           70 KGGQLQTYVD-MLDRIHGKRC---SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE  145 (384)
Q Consensus        70 ~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  145 (384)
                      ..|++++|.+ .+++......   ..+...+..+...+.+.|++++|...|+++.+.... +..++..+..++...|+++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~  115 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQEL  115 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHH
Confidence            3467777777 7765544321   113456777788888888888888888888876533 6777888888888888888


Q ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH---------------HHHHHHh
Q 016681          146 SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNL---------------LIEGCAK  210 (384)
Q Consensus       146 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~  210 (384)
                      +|...++++.+... .+..++..+..++...|++++|...++++.... +.+...+..               .+..+..
T Consensus       116 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (368)
T 1fch_A          116 LAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLS  193 (368)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHH
T ss_pred             HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence            88888888877643 367778888888888888888888888887754 122222211               2333448


Q ss_pred             cCchHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 016681          211 AKRIEESLSYCEQMMSRKLLP-SCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLK  289 (384)
Q Consensus       211 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  289 (384)
                      .|++++|...++++.+..+.. +..++..+...+...|++++|...++.+.+..+ .+...+..+...+...|++++|..
T Consensus       194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~  272 (368)
T 1fch_A          194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence            899999999999998875432 578889999999999999999999999988643 367899999999999999999999


Q ss_pred             HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC----------CHhHHHHHHHHHhccCCHHHHHH
Q 016681          290 LYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP----------GVDIYESLVGIHLEKGNKAKALH  359 (384)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~  359 (384)
                      .++++.+.. +.+..++..+...+.+.|++++|...|+++.+..+..          ...+|..+..++...|++++|..
T Consensus       273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  351 (368)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence            999998874 4567788999999999999999999999987743221          26889999999999999999998


Q ss_pred             HHHHH
Q 016681          360 LCEEM  364 (384)
Q Consensus       360 ~~~~~  364 (384)
                      ++++.
T Consensus       352 ~~~~~  356 (368)
T 1fch_A          352 ADARD  356 (368)
T ss_dssp             HHTTC
T ss_pred             hHHHH
Confidence            87643

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.90  E-value=4e-18  Score=151.16  Aligned_cols=338  Identities=12%  Similarity=0.025  Sum_probs=283.0

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCC
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTK----SDRNDLVWRIYQHMLENIRYPNEATIRTLISALCK----GGQ   73 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~   73 (384)
                      +++++|++.|+...+.|   ++.++..+...|..    .+++++|.+.|++..+.|   +...+..+...|..    .++
T Consensus        57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~  130 (490)
T 2xm6_A           57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVD  130 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence            67899999999998875   67788888888888    899999999999988764   66777788888887    789


Q ss_pred             hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh----hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChH
Q 016681           74 LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ----EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK----MRNLE  145 (384)
Q Consensus        74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~  145 (384)
                      +++|...|++....+   +...+..+...|..    .+++++|.+.|++..+.|   +...+..+...|..    .++.+
T Consensus       131 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~  204 (490)
T 2xm6_A          131 KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDA  204 (490)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHH
Confidence            999999999988765   46677778888877    789999999999998875   67788888888887    89999


Q ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchHHH
Q 016681          146 SALVVYEEMLKRGFSANSFVYTTFIGAYCE----YGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAK----AKRIEES  217 (384)
Q Consensus       146 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a  217 (384)
                      +|.++|++..+.+   +...+..+...|..    .+++++|..+|++..+.+   +...+..+...|..    .+++++|
T Consensus       205 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A  278 (490)
T 2xm6_A          205 ISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKA  278 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHH
Confidence            9999999988864   56677778888876    789999999999988765   34566666677776    7899999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHH
Q 016681          218 LSYCEQMMSRKLLPSCSAFNEMIRRLCEC-----GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG---EIQEVLK  289 (384)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~  289 (384)
                      ...|++..+.+   +...+..+...+...     +++++|...++...+.+   +...+..+...|...|   +.++|.+
T Consensus       279 ~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~  352 (490)
T 2xm6_A          279 LEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVE  352 (490)
T ss_dssp             HHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHH
Confidence            99999998765   566777788888887     89999999999998874   5567777888887756   7899999


Q ss_pred             HHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhc----cCCHHHHHHHH
Q 016681          290 LYYEMEYKSISPTLPAYTSLISSLCQ----CGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLE----KGNKAKALHLC  361 (384)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~  361 (384)
                      .|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...|
T Consensus       353 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  426 (490)
T 2xm6_A          353 WFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWF  426 (490)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            999998874   56788888888888    899999999999999875   57788888888887    89999999999


Q ss_pred             HHHHhCCC
Q 016681          362 EEMVSEGL  369 (384)
Q Consensus       362 ~~~~~~~~  369 (384)
                      ++..+.+.
T Consensus       427 ~~A~~~~~  434 (490)
T 2xm6_A          427 DTASTNDM  434 (490)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHCCC
Confidence            99988764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.89  E-value=5e-21  Score=163.54  Aligned_cols=311  Identities=11%  Similarity=-0.013  Sum_probs=228.8

Q ss_pred             hHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHH-HHHHHHhcCCC-C--CHHHHHHHHHHHHccCChHHHHH
Q 016681            4 FEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWR-IYQHMLENIRY-P--NEATIRTLISALCKGGQLQTYVD   79 (384)
Q Consensus         4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~   79 (384)
                      |+.+...|+.+.+.+  |+         ++...|++++|.. .|+........ |  +...+..+...+.+.|++++|..
T Consensus        17 ~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~   85 (368)
T 1fch_A           17 WDKLQAELEEMAKRD--AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVL   85 (368)
T ss_dssp             ----------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCC--ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHH
Confidence            445555555554442  22         3334578888888 77765543211 1  34567788888999999999999


Q ss_pred             HHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 016681           80 MLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGF  159 (384)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  159 (384)
                      .|+++.+.. +.+..++..+...+...|++++|.+.++++.+.... +..++..+...+...|++++|.+.++++.+...
T Consensus        86 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  163 (368)
T 1fch_A           86 LFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTP  163 (368)
T ss_dssp             HHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            999999876 677889999999999999999999999999887543 788899999999999999999999999988643


Q ss_pred             CCChHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCchHHHHHHHHH
Q 016681          160 SANSFVYTT---------------FIGAYCEYGKIEEANCLMQEMENAGLK-PYDETFNLLIEGCAKAKRIEESLSYCEQ  223 (384)
Q Consensus       160 ~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~  223 (384)
                      . +...+..               .+..+...|++++|...++++.+.... ++..++..+...+...|++++|...+++
T Consensus       164 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  242 (368)
T 1fch_A          164 A-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA  242 (368)
T ss_dssp             T-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             C-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3 2222221               233444899999999999999886521 1468889999999999999999999999


Q ss_pred             HHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 016681          224 MMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP--  301 (384)
Q Consensus       224 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--  301 (384)
                      +.+..+. +..++..+...+...|++++|...++.+.+..+ .+...+..+...|.+.|++++|...|+++.+.....  
T Consensus       243 al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  320 (368)
T 1fch_A          243 ALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG  320 (368)
T ss_dssp             HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence            9887543 678899999999999999999999999988643 368899999999999999999999999987653111  


Q ss_pred             --------ChhhHHHHHHHHHhcCChHHHHHHHHHHh
Q 016681          302 --------TLPAYTSLISSLCQCGKLEEADKYFKIMK  330 (384)
Q Consensus       302 --------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  330 (384)
                              ...+|..+..++...|++++|..++++..
T Consensus       321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL  357 (368)
T ss_dssp             ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence                    15789999999999999999999887543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.88  E-value=7.7e-21  Score=162.23  Aligned_cols=266  Identities=11%  Similarity=-0.003  Sum_probs=212.5

Q ss_pred             cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 016681           92 MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIG  171 (384)
Q Consensus        92 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  171 (384)
                      +...+..+...+.+.|++++|.+.|+++.+.... +..++..+...+...|++++|...|+++.+... .+...+..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence            4556778888888899999999999988877543 778888888889999999999999998887643 36778888889


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCC-----------hhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC-ChhhHHHH
Q 016681          172 AYCEYGKIEEANCLMQEMENAGLKPY-----------DETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP-SCSAFNEM  239 (384)
Q Consensus       172 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l  239 (384)
                      +|...|++++|...++++.+..  |+           ...+..+...+...|++++|...++++.+..+.. +..++..+
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  219 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL  219 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence            9999999999999998887643  22           1223345778889999999999999998875432 67889999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 016681          240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKL  319 (384)
Q Consensus       240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  319 (384)
                      ...+...|++++|...++.+.+..+ .+..+|..+...|...|++++|...|+++.+.. +.+..++..+..+|...|++
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~  297 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY  297 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence            9999999999999999999988743 378899999999999999999999999998874 44578899999999999999


Q ss_pred             HHHHHHHHHHhhCCCC-----------CCHhHHHHHHHHHhccCCHHHHHHHHHH
Q 016681          320 EEADKYFKIMKSHSLV-----------PGVDIYESLVGIHLEKGNKAKALHLCEE  363 (384)
Q Consensus       320 ~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~  363 (384)
                      ++|...|+++.+..+.           .+...|..+..++...|+.+.+..+.++
T Consensus       298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9999999998763211           1367899999999999999988887665

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.88  E-value=5.2e-21  Score=163.30  Aligned_cols=268  Identities=11%  Similarity=-0.035  Sum_probs=217.9

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016681           57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVY  136 (384)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  136 (384)
                      +...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|++.|+++.+.... +..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence            34558888889999999999999999998876 677889999999999999999999999999887543 6888999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHH
Q 016681          137 AKVKMRNLESALVVYEEMLKRGFSA---------NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLK-PYDETFNLLIE  206 (384)
Q Consensus       137 ~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~  206 (384)
                      .+...|++++|...++++.+.....         ....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            9999999999999999998752110         1223344578899999999999999999886521 15788999999


Q ss_pred             HHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 016681          207 GCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQE  286 (384)
Q Consensus       207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  286 (384)
                      .+...|++++|...+++..+..+. +..++..+..++...|++++|...++.+.+..+. +...+..+...|.+.|++++
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHH
Confidence            999999999999999999887654 7889999999999999999999999999987433 68899999999999999999


Q ss_pred             HHHHHHHHHhcCCC-----------CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 016681          287 VLKLYYEMEYKSIS-----------PTLPAYTSLISSLCQCGKLEEADKYFKI  328 (384)
Q Consensus       287 a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~  328 (384)
                      |...|+++.+....           .+...|..+..++...|+.+.+..+.++
T Consensus       300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            99999998764211           1367889999999999999998887764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.87  E-value=1.5e-19  Score=151.66  Aligned_cols=266  Identities=9%  Similarity=-0.029  Sum_probs=191.7

Q ss_pred             HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 016681           94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAY  173 (384)
Q Consensus        94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  173 (384)
                      ..+..+...+...|++++|..+++++.+.... +..++..+...+...|++++|...++++.+... .+...+..+...+
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~   99 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH   99 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence            34445555666666666666666666654332 555566666666666666666666666665522 2455666666666


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHH--------------HH-HHHhcCchHHHHHHHHHHHhCCCCCChhhHHH
Q 016681          174 CEYGKIEEANCLMQEMENAGLKPYDETFNLL--------------IE-GCAKAKRIEESLSYCEQMMSRKLLPSCSAFNE  238 (384)
Q Consensus       174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  238 (384)
                      ...|++++|.+.++++.+.. +.+...+..+              .. .+...|++++|...++++.+..+. +...+..
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~  177 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHAS  177 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHH
Confidence            66666666666666666543 1122222222              22 366778899999999998887544 6788888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 016681          239 MIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGK  318 (384)
Q Consensus       239 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  318 (384)
                      +...+...|++++|...++.+.+..+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus       178 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~  255 (327)
T 3cv0_A          178 LGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ  255 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence            99999999999999999999887643 367889999999999999999999999988764 4567788889999999999


Q ss_pred             hHHHHHHHHHHhhCCCCC-----------CHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681          319 LEEADKYFKIMKSHSLVP-----------GVDIYESLVGIHLEKGNKAKALHLCEEMV  365 (384)
Q Consensus       319 ~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  365 (384)
                      +++|...++++.+..+..           +...|..+..++...|++++|..++++..
T Consensus       256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999999988754332           46788899999999999999999887644

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.87  E-value=1.2e-16  Score=141.64  Aligned_cols=331  Identities=11%  Similarity=0.021  Sum_probs=279.1

Q ss_pred             HHHHHHHHhcCCCCchhhHHHHHHHHhh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHH
Q 016681            8 FDVCRYLEQRGFSLSLISFNTLIHVVTK----SDRNDLVWRIYQHMLENIRYPNEATIRTLISALCK----GGQLQTYVD   79 (384)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~   79 (384)
                      ++.+....+.|   ++.++..+...|..    .+++++|...|+...+.|   +...+..+...|..    .+++++|.+
T Consensus        27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~  100 (490)
T 2xm6_A           27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI  100 (490)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            45555555543   78888888888888    899999999999998863   67788888899988    899999999


Q ss_pred             HHHHHHhCCCCCcHHhHHHHHHHHHh----hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHH
Q 016681           80 MLDRIHGKRCSPMVIVNTSLILRIIQ----EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK----MRNLESALVVY  151 (384)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~  151 (384)
                      +|++....+   +...+..+...|..    .+++++|.+.|++..+.|   +...+..+...|..    .++.++|.+.|
T Consensus       101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  174 (490)
T 2xm6_A          101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY  174 (490)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            999998865   56677778888887    789999999999998886   67778888888887    78999999999


Q ss_pred             HHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchHHHHHHHHH
Q 016681          152 EEMLKRGFSANSFVYTTFIGAYCE----YGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAK----AKRIEESLSYCEQ  223 (384)
Q Consensus       152 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~  223 (384)
                      ++..+.|   +...+..+...|..    .+++++|.+.|++..+.+   +...+..+...|..    .+++++|...|++
T Consensus       175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~  248 (490)
T 2xm6_A          175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ  248 (490)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            9998874   67788888889988    899999999999998865   34667777777775    7899999999999


Q ss_pred             HHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 016681          224 MMSRKLLPSCSAFNEMIRRLCE----CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE-----GEIQEVLKLYYEM  294 (384)
Q Consensus       224 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~  294 (384)
                      ..+.+   +...+..+...+..    .+++++|...|+...+.+   +...+..+...|...     +++++|...|++.
T Consensus       249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a  322 (490)
T 2xm6_A          249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS  322 (490)
T ss_dssp             HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred             HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence            98875   55677778888887    899999999999998764   566777888888877     8999999999999


Q ss_pred             HhcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHHHhC
Q 016681          295 EYKSISPTLPAYTSLISSLCQCG---KLEEADKYFKIMKSHSLVPGVDIYESLVGIHLE----KGNKAKALHLCEEMVSE  367 (384)
Q Consensus       295 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~  367 (384)
                      .+.+   +...+..+...|...|   ++++|.++|++..+.+   +...+..+...|..    .+++++|..++++..+.
T Consensus       323 ~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~  396 (490)
T 2xm6_A          323 AEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ  396 (490)
T ss_dssp             HHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence            8876   4567777888887766   8899999999999874   67888899999988    89999999999999887


Q ss_pred             C
Q 016681          368 G  368 (384)
Q Consensus       368 ~  368 (384)
                      |
T Consensus       397 ~  397 (490)
T 2xm6_A          397 G  397 (490)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.86  E-value=4.6e-19  Score=148.72  Aligned_cols=280  Identities=9%  Similarity=-0.020  Sum_probs=162.8

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      +...+......+...|++++|..+|+.+.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence            445566777778888888888888888877643 366777777788888888888888888877665 556777777777


Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH-HH-HHHhcCCH
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTF-IG-AYCEYGKI  179 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~  179 (384)
                      .+...|++++|.+.++++...... +...+..+....                      |+......+ .. .+...|++
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~  154 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY  154 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence            888888888888888877765432 222222220000                      000000011 11 23444555


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016681          180 EEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLA  259 (384)
Q Consensus       180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  259 (384)
                      ++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++.+
T Consensus       155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a  232 (327)
T 3cv0_A          155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRA  232 (327)
T ss_dssp             HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55555555554433 223445555555555555555555555555544322 4455555666666666666666666665


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------ChhhHHHHHHHHHhcCChHHHHHHHHH
Q 016681          260 LDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP-----------TLPAYTSLISSLCQCGKLEEADKYFKI  328 (384)
Q Consensus       260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~  328 (384)
                      .+..+ .+...+..+...+.+.|++++|.+.++++.+.....           +..++..+..++.+.|++++|..++++
T Consensus       233 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          233 LDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             HHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            55432 245566666666666666666666666665442111           345666666666677777776666654


Q ss_pred             H
Q 016681          329 M  329 (384)
Q Consensus       329 ~  329 (384)
                      .
T Consensus       312 ~  312 (327)
T 3cv0_A          312 N  312 (327)
T ss_dssp             C
T ss_pred             H
Confidence            3

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.86  E-value=5.9e-17  Score=145.08  Aligned_cols=118  Identities=16%  Similarity=0.066  Sum_probs=88.9

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HccCChHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISAL-CKGGQLQTYVD   79 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~   79 (384)
                      .|++++|..+|+.+.+.- |.+...|...+..+.+.|++++|..+|++++..  .|+...|...+... ...|+.+.|.+
T Consensus        25 ~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~  101 (530)
T 2ooe_A           25 NQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKE  101 (530)
T ss_dssp             SSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred             hCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHH
Confidence            378899999999998863 567888999999999999999999999999875  36777777776533 34577776655


Q ss_pred             ----HHHHHHhC-CC-CCcHHhHHHHHHHHHh---------hcchHHHHHHHHHHHH
Q 016681           80 ----MLDRIHGK-RC-SPMVIVNTSLILRIIQ---------EERIEEGMVLLKRMLR  121 (384)
Q Consensus        80 ----~~~~~~~~-~~-~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~  121 (384)
                          +|+..... |. +++...|...+.....         .|+++.|..+|++.++
T Consensus       102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~  158 (530)
T 2ooe_A          102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV  158 (530)
T ss_dssp             HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence                66665432 32 2456777777776554         6888899999988877

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.85  E-value=1.9e-20  Score=157.10  Aligned_cols=283  Identities=12%  Similarity=0.117  Sum_probs=136.4

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      +|++++|.++++++.      ++.+|..+..++.+.|++++|++.|.+.      +|..+|..++..+...|++++|+..
T Consensus        16 ~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y   83 (449)
T 1b89_A           16 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY   83 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            367889999998882      3459999999999999999999999653      5778999999999999999999998


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS  160 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  160 (384)
                      ++...+.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|.+++|...|..+      
T Consensus        84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------  148 (449)
T 1b89_A           84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------  148 (449)
T ss_dssp             ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred             HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence            8877664  5567889999999999999999988885       367779999999999999999999999876      


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 016681          161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI  240 (384)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  240 (384)
                         ..|..++.++.+.|++++|.+.++++      .+..+|..++.+|...|+++.|......     +..++.-...++
T Consensus       149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv  214 (449)
T 1b89_A          149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI  214 (449)
T ss_dssp             ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH
T ss_pred             ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH
Confidence               47999999999999999999999988      2568999999999999999999554443     233455566788


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCC------ChhhHHHHHHHH
Q 016681          241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEY-KSISP------TLPAYTSLISSL  313 (384)
Q Consensus       241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~~~  313 (384)
                      ..|.+.|.+++|..+++...... +-....|+-+...|++- ++++..+.++...+ .+++|      +...|..++..|
T Consensus       215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly  292 (449)
T 1b89_A          215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY  292 (449)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998765 44678888888888764 34444444443322 23333      467889999999


Q ss_pred             HhcCChHHHHHHH
Q 016681          314 CQCGKLEEADKYF  326 (384)
Q Consensus       314 ~~~g~~~~a~~~~  326 (384)
                      .+.++++.|....
T Consensus       293 ~~~~e~d~A~~tm  305 (449)
T 1b89_A          293 DKYEEYDNAIITM  305 (449)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HhhchHHHHHHHH
Confidence            9999999886643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.84  E-value=1.8e-17  Score=146.34  Aligned_cols=351  Identities=11%  Similarity=-0.026  Sum_probs=234.0

Q ss_pred             CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhc-----C--CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhC----
Q 016681           20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLEN-----I--RYP-NEATIRTLISALCKGGQLQTYVDMLDRIHGK----   87 (384)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----   87 (384)
                      +..+..||.+...+...|++++|++.|++..+.     +  ..| ...+|..+..+|...|++++|...+++....    
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            345677999999999999999999999887652     1  123 4668899999999999999999999887542    


Q ss_pred             -C--CCCcHHhHHHHHHHHHhh--cchHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHcCC
Q 016681           88 -R--CSPMVIVNTSLILRIIQE--ERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA---KVKMRNLESALVVYEEMLKRGF  159 (384)
Q Consensus        88 -~--~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~  159 (384)
                       +  ......++.....++...  +++++|++.|++..+..+. +...+..+..+   +...++.++|.+.+++..+...
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p  206 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP  206 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence             1  112345666665555544  5789999999999886543 55555555444   3456777889999988877643


Q ss_pred             CCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhh
Q 016681          160 SANSFVYTTFIGAYCE----YGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSA  235 (384)
Q Consensus       160 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  235 (384)
                      . +...+..+...+..    .+++++|.+.+++..... +.+...+..+...|...|++++|...+++..+..+. +..+
T Consensus       207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~  283 (472)
T 4g1t_A          207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL  283 (472)
T ss_dssp             S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred             c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence            2 55566555555444    456788999999887765 455677888899999999999999999999887654 5666


Q ss_pred             HHHHHHHHHhc-------------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016681          236 FNEMIRRLCEC-------------------GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEY  296 (384)
Q Consensus       236 ~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  296 (384)
                      +..+..+|...                   +..+.|...++...+..+. +...+..+...+...|++++|...|++..+
T Consensus       284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~  362 (472)
T 4g1t_A          284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFS  362 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence            66666555332                   2356677777777765433 567788889999999999999999999887


Q ss_pred             cCCCCChh--hHHHHHH-HHHhcCChHHHHHHHHHHhhCCC-----------------------CCCHhHHHHHHHHHhc
Q 016681          297 KSISPTLP--AYTSLIS-SLCQCGKLEEADKYFKIMKSHSL-----------------------VPGVDIYESLVGIHLE  350 (384)
Q Consensus       297 ~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~  350 (384)
                      ....+...  .+..+.. .....|++++|+..|++..+...                       +.+..+|..+...|..
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~  442 (472)
T 4g1t_A          363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL  442 (472)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            65333221  1222222 23467889999988887765322                       2256789999999999


Q ss_pred             cCCHHHHHHHHHHHHhCCC-CCCccc
Q 016681          351 KGNKAKALHLCEEMVSEGL-KPSTSY  375 (384)
Q Consensus       351 ~g~~~~a~~~~~~~~~~~~-~p~~~~  375 (384)
                      .|++++|.+.|++.++.+- .|+..+
T Consensus       443 ~g~~~~A~~~y~kALe~~~~~p~a~~  468 (472)
T 4g1t_A          443 NEKMQQADEDSERGLESGSLIPSASS  468 (472)
T ss_dssp             HHHCC---------------------
T ss_pred             cCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence            9999999999999998753 355443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.84  E-value=3e-18  Score=140.63  Aligned_cols=253  Identities=12%  Similarity=0.063  Sum_probs=131.1

Q ss_pred             HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681           31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE  110 (384)
Q Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  110 (384)
                      +.....|+++.|+..++........+.......+.+++...|+++.|+..++.   .. +|+..++..+...+...++.+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~-~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SS-APELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TS-CHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cC-ChhHHHHHHHHHHHcCCCcHH
Confidence            34455666666666655443321111122334455666666666666654433   12 455556666666666666666


Q ss_pred             HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681          111 EGMVLLKRMLRKNMIH-DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEM  189 (384)
Q Consensus       111 ~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  189 (384)
                      +|++.++++...+..| +...+..+...+...|++++|.+.+++      +.+...+..++..+.+.|++++|.+.++++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  156 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM  156 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            6666666666554333 344444455566666666666666655      235555666666666666666666666666


Q ss_pred             HHcCCCCChhhH---HHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 016681          190 ENAGLKPYDETF---NLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP  266 (384)
Q Consensus       190 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  266 (384)
                      .+..  |+....   ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...++++.+..+. 
T Consensus       157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-  232 (291)
T 3mkr_A          157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-  232 (291)
T ss_dssp             HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence            5543  332111   1111222233555555555555555432 24555555555555555555555555555554322 


Q ss_pred             CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhc
Q 016681          267 NEITYSHLIGGYAKEGEIQE-VLKLYYEMEYK  297 (384)
Q Consensus       267 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~  297 (384)
                      +..++..++..+...|+.++ +.++++++.+.
T Consensus       233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            44555555555555555543 34555555443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.84  E-value=3.4e-18  Score=140.27  Aligned_cols=271  Identities=12%  Similarity=0.090  Sum_probs=213.6

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      .|+++.|+..++.+..............+.++|...|+++.|+..++.    .-.|+..++..+...+...++.++|++.
T Consensus        12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~   87 (291)
T 3mkr_A           12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAE   87 (291)
T ss_dssp             TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence            488999999988776543222234566778999999999999987654    2345777888999999999999999999


Q ss_pred             HHHHHhCCC-CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 016681           81 LDRIHGKRC-SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGF  159 (384)
Q Consensus        81 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  159 (384)
                      ++++...+. +.+...+..+...+...|++++|++.+++      +.+...+..+...+.+.|++++|.+.++.+.+.. 
T Consensus        88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-  160 (291)
T 3mkr_A           88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-  160 (291)
T ss_dssp             HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence            999987653 44677788888999999999999999988      3578899999999999999999999999998874 


Q ss_pred             CCChHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhH
Q 016681          160 SANSFVY---TTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAF  236 (384)
Q Consensus       160 ~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  236 (384)
                       |+....   ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+..+. +..++
T Consensus       161 -p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l  237 (291)
T 3mkr_A          161 -EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETL  237 (291)
T ss_dssp             -TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred             -cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence             443211   223344555689999999999999874 567788999999999999999999999999988655 78899


Q ss_pred             HHHHHHHHhcCChHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 016681          237 NEMIRRLCECGNAKQ-ANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKL  290 (384)
Q Consensus       237 ~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  290 (384)
                      ..++..+...|+.++ +..+++++.+..+. ++.    +.....+.+.++++..-
T Consensus       238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~----~~d~~~~~~~fd~~~~~  287 (291)
T 3mkr_A          238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPF----IKEYRAKENDFDRLVLQ  287 (291)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChH----HHHHHHHHHHHHHHHHH
Confidence            999999999999876 67899998876432 332    23334445555555443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.83  E-value=2e-16  Score=141.67  Aligned_cols=349  Identities=8%  Similarity=-0.005  Sum_probs=245.7

Q ss_pred             HHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 016681           11 CRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCS   90 (384)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   90 (384)
                      |+...+.. |-+..+|..++.. .+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|+++....  
T Consensus         2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--   76 (530)
T 2ooe_A            2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--   76 (530)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred             hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence            44554443 4588899999984 78999999999999999863 3478889999999999999999999999999874  


Q ss_pred             CcHHhHHHHHHHH-HhhcchHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHH
Q 016681           91 PMVIVNTSLILRI-IQEERIEEGMV----LLKRMLRK-NMIH-DTIAYSLIVYAKVK---------MRNLESALVVYEEM  154 (384)
Q Consensus        91 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~  154 (384)
                      |+...|...+... ...|+.+.|.+    +|++.... |..| +...|...+....+         .|+++.|..+|++.
T Consensus        77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a  156 (530)
T 2ooe_A           77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG  156 (530)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence            5778888777543 34577776665    77766543 4443 55677777766554         67888999999888


Q ss_pred             HHcCCCCChHHHHHHHHHH-------------HhcCCHH-----------------------------------------
Q 016681          155 LKRGFSANSFVYTTFIGAY-------------CEYGKIE-----------------------------------------  180 (384)
Q Consensus       155 ~~~~~~~~~~~~~~l~~~~-------------~~~~~~~-----------------------------------------  180 (384)
                      .+.........|.......             .+.++++                                         
T Consensus       157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~  236 (530)
T 2ooe_A          157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY  236 (530)
T ss_dssp             TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred             HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence            7631111112222211110             0111222                                         


Q ss_pred             -------------------HHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCchH-------HHHHHHHHHHhC
Q 016681          181 -------------------EANCLMQEMENAGLKPYDETFNLLIEGCAK-------AKRIE-------ESLSYCEQMMSR  227 (384)
Q Consensus       181 -------------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~  227 (384)
                                         ++..+|++..... +.+...|......+.+       .|+++       +|..++++..+.
T Consensus       237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~  315 (530)
T 2ooe_A          237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST  315 (530)
T ss_dssp             HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence                               3333444444321 2334555555655554       57776       889999998863


Q ss_pred             CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH
Q 016681          228 KLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNE-ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAY  306 (384)
Q Consensus       228 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  306 (384)
                      -.+.+...|..++..+.+.|++++|..+|+.+.+..+. +. ..|..++..+.+.|+.++|..+|++..+.. +.+...|
T Consensus       316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~  393 (530)
T 2ooe_A          316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY  393 (530)
T ss_dssp             TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence            22336788888999999999999999999999986322 33 578888888888999999999999998763 2233333


Q ss_pred             HHHHHH-HHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681          307 TSLISS-LCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       307 ~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  368 (384)
                      ...... +...|++++|..+|++..+..+. +...|..++..+.+.|+.++|..+|++....+
T Consensus       394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~  455 (530)
T 2ooe_A          394 VTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  455 (530)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence            332222 33589999999999998876433 67889999999999999999999999998864

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.81  E-value=8.7e-19  Score=147.14  Aligned_cols=284  Identities=12%  Similarity=0.085  Sum_probs=137.6

Q ss_pred             hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHH
Q 016681           35 KSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMV  114 (384)
Q Consensus        35 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  114 (384)
                      +.|++++|.+.++++      +++.+|..++.++.+.|++++|++.|.+      .+|...|..++..+...|++++|++
T Consensus        15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence            667899999999988      2345999999999999999999999965      3577799999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016681          115 LLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL  194 (384)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  194 (384)
                      .++..++.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|.+++|...|..+     
T Consensus        83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----  148 (449)
T 1b89_A           83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----  148 (449)
T ss_dssp             ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred             HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence            88877764  3457788999999999999999998884       367789999999999999999999999976     


Q ss_pred             CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 016681          195 KPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHL  274 (384)
Q Consensus       195 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  274 (384)
                          ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......     +...+.....+
T Consensus       149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l  213 (449)
T 1b89_A          149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL  213 (449)
T ss_dssp             ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred             ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence                47999999999999999999999998      2788999999999999999999665543     22345556678


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCC------CHhHHHHHHHH
Q 016681          275 IGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH-SLVP------GVDIYESLVGI  347 (384)
Q Consensus       275 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~  347 (384)
                      +..|.+.|++++|..+++...... +-....|+.|..+|++- ++++..+.++..-+. +++|      +...|..+...
T Consensus       214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l  291 (449)
T 1b89_A          214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL  291 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988665 55667788887777764 355555544443331 2222      45679999999


Q ss_pred             HhccCCHHHHHHHH
Q 016681          348 HLEKGNKAKALHLC  361 (384)
Q Consensus       348 ~~~~g~~~~a~~~~  361 (384)
                      |...++++.|....
T Consensus       292 y~~~~e~d~A~~tm  305 (449)
T 1b89_A          292 YDKYEEYDNAIITM  305 (449)
T ss_dssp             HHHTTCHHHHHHHH
T ss_pred             HHhhchHHHHHHHH
Confidence            99999999988743

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.81  E-value=2.7e-16  Score=138.91  Aligned_cols=329  Identities=11%  Similarity=-0.048  Sum_probs=227.9

Q ss_pred             CcchHHHHHHHHHHHhc--------CCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcC------CC-CCHHHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQR--------GFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENI------RY-PNEATIRTLI   65 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~-~~~~~~~~l~   65 (384)
                      +|++++|++.|++..+.        ..+....+|+.+..+|...|++++|...+++..+..      .. ....++....
T Consensus        64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g  143 (472)
T 4g1t_A           64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG  143 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence            58899999999887542        123356789999999999999999999998876531      11 1355666665


Q ss_pred             HHHHc--cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH---hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 016681           66 SALCK--GGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII---QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK  140 (384)
Q Consensus        66 ~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  140 (384)
                      .++..  .+++++|++.|++..+.. |.++..+..+...+.   ..++.++|++.+++..+.... +..++..+...+..
T Consensus       144 ~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~  221 (472)
T 4g1t_A          144 WTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHK  221 (472)
T ss_dssp             HHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHH
Confidence            55554  457999999999998876 556777766665544   456678899999998876543 56666666555544


Q ss_pred             ----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----
Q 016681          141 ----MRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKA-----  211 (384)
Q Consensus       141 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----  211 (384)
                          .+++++|.+++++...... .+...+..+...|...|++++|...+++..+.. +.+..++..+...|...     
T Consensus       222 ~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~  299 (472)
T 4g1t_A          222 MREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVM  299 (472)
T ss_dssp             CC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhh
Confidence                4678899999999887643 377788999999999999999999999998764 33455666655554322     


Q ss_pred             --------------CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH--HHHHHH
Q 016681          212 --------------KRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEI--TYSHLI  275 (384)
Q Consensus       212 --------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~  275 (384)
                                    +..+.|...++...+.++. +..++..+...+...|++++|...|++..+....+...  .+..+.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~  378 (472)
T 4g1t_A          300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYG  378 (472)
T ss_dssp             HC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence                          3456788888888776544 56778889999999999999999999998865443221  222332


Q ss_pred             H-HHHhcCCHHHHHHHHHHHHhcC-----------------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681          276 G-GYAKEGEIQEVLKLYYEMEYKS-----------------------ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       276 ~-~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  331 (384)
                      . .....|+.++|+..|.+..+..                       -+.+..+|..+...+...|++++|.+.|++..+
T Consensus       379 ~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe  458 (472)
T 4g1t_A          379 NFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE  458 (472)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            2 2346789999999888776542                       134567889999999999999999999999988


Q ss_pred             CCC
Q 016681          332 HSL  334 (384)
Q Consensus       332 ~~~  334 (384)
                      .+.
T Consensus       459 ~~~  461 (472)
T 4g1t_A          459 SGS  461 (472)
T ss_dssp             ---
T ss_pred             cCC
Confidence            653

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.80  E-value=5.6e-20  Score=166.62  Aligned_cols=111  Identities=13%  Similarity=0.201  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 016681          235 AFNEMIRRLCECGNAKQANGMLTLAL---DKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLIS  311 (384)
Q Consensus       235 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  311 (384)
                      +|+++|.+|++.|++++|..+|..|.   ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~  208 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            45555555555555555555554433   234455555555555555555555555555555555555555555555555


Q ss_pred             HHHhcCCh-HHHHHHHHHHhhCCCCCCHhHHHHHH
Q 016681          312 SLCQCGKL-EEADKYFKIMKSHSLVPGVDIYESLV  345 (384)
Q Consensus       312 ~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~  345 (384)
                      ++++.|+. ++|.++|++|.+.|+.||..+|++++
T Consensus       209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll  243 (1134)
T 3spa_A          209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL  243 (1134)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCC
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCCCChhhccccc
Confidence            55555542 44455555555555555555555444

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.79  E-value=3.4e-19  Score=161.60  Aligned_cols=119  Identities=10%  Similarity=0.089  Sum_probs=103.6

Q ss_pred             cHHhHHHHHHHHHhhcchHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHH
Q 016681           92 MVIVNTSLILRIIQEERIEEGMVLLKRMLR---KNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTT  168 (384)
Q Consensus        92 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  168 (384)
                      -..+|+++|.+|++.|++++|.++|++|.+   .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            356899999999999999999999987763   57889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 016681          169 FIGAYCEYGK-IEEANCLMQEMENAGLKPYDETFNLLIEGCAK  210 (384)
Q Consensus       169 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  210 (384)
                      +|.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR  248 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR  248 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence            9999999887 47888999999999999999999988765544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.7e-16  Score=128.20  Aligned_cols=226  Identities=12%  Similarity=0.064  Sum_probs=155.4

Q ss_pred             HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CC----hHHH
Q 016681           93 VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS--AN----SFVY  166 (384)
Q Consensus        93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~  166 (384)
                      ...+..+...+...|++++|...|++..+..  .+..++..+..++...|++++|.+.+++..+....  ++    ...+
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            3455666666777777777777777776665  46666777777777777777777777776654211  11    4566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 016681          167 TTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC  246 (384)
Q Consensus       167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  246 (384)
                      ..+...+...|++++|...+++..+..  |+.       ..+.+.|++++|...++.+....+. +...+..+...+...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence            777777777777777777777776643  332       3455567777787777777765433 455667777777777


Q ss_pred             CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681          247 GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYF  326 (384)
Q Consensus       247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  326 (384)
                      |++++|...++.+.+..+. +...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+
T Consensus       153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  230 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL  230 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            8888888888777765433 56777777777777888888888887777664 344666777777777788888888777


Q ss_pred             HHHhhC
Q 016681          327 KIMKSH  332 (384)
Q Consensus       327 ~~~~~~  332 (384)
                      ++..+.
T Consensus       231 ~~a~~~  236 (258)
T 3uq3_A          231 DAARTK  236 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            777653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.78  E-value=1.5e-16  Score=124.92  Aligned_cols=200  Identities=11%  Similarity=-0.004  Sum_probs=137.5

Q ss_pred             CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 016681           20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSL   99 (384)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   99 (384)
                      |+++..+..+...+.+.|++++|...|+..++..+ .+...+..+...+.+.|++++|+..|++..+.. |.+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            45677788888888888888888888888877643 367778888888888888888888888887765 5667778888


Q ss_pred             HHHHHhh-----------cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHH
Q 016681          100 ILRIIQE-----------ERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTT  168 (384)
Q Consensus       100 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  168 (384)
                      ...+...           |++++|+..+++..+..+. +...+..+...+...|++++|...|++..+..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            8888887           7778888777777776433 56667777777777777777777777777765  46677777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681          169 FIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMM  225 (384)
Q Consensus       169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  225 (384)
                      +..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            7777777777777777777776654 3445566666777777777777777766553

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.77  E-value=4.6e-16  Score=135.95  Aligned_cols=340  Identities=10%  Similarity=-0.009  Sum_probs=222.8

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCCh---hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-----C
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRN---DLVWRIYQHMLENIRYPNEATIRTLISALCKGG-----Q   73 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~   73 (384)
                      |++++|++.|+...+.|   ++.++..+...+...|+.   ++|..+|+...+.    ++..+..+...+...+     +
T Consensus        17 g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~   89 (452)
T 3e4b_A           17 GDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAE   89 (452)
T ss_dssp             HHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred             CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcC
Confidence            78999999999998876   455556666777778888   8999999988764    5555666666455554     7


Q ss_pred             hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 016681           74 LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE---EGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVV  150 (384)
Q Consensus        74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  150 (384)
                      +++|...|++....+ .++  .+..|...|...+..+   .+.+.+......|   +......+...|...+.++.+...
T Consensus        90 ~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~  163 (452)
T 3e4b_A           90 HHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD  163 (452)
T ss_dssp             HHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred             HHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence            889999999998876 333  6667777777666544   4455555555555   345666677777777766555554


Q ss_pred             HHHHHHcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CchHHHHHHHHH
Q 016681          151 YEEMLKRGFSANSFVYTTFIGAYCEYG---KIEEANCLMQEMENAGLKPYDETFNLLIEGCAKA----KRIEESLSYCEQ  223 (384)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~  223 (384)
                      ...+.+.-...++..+..+...|...|   +.++|++.|++..+.| .++...+..+...|...    +++++|...|++
T Consensus       164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~  242 (452)
T 3e4b_A          164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEK  242 (452)
T ss_dssp             HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence            433333222224447888888888888   8889999999988887 45555556666666554    688899999998


Q ss_pred             HHhCCCCCChhhHHHHHHH-H--HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHH
Q 016681          224 MMSRKLLPSCSAFNEMIRR-L--CECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG-----EIQEVLKLYYEME  295 (384)
Q Consensus       224 ~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~  295 (384)
                      .. .+   +...+..+... +  ...+++++|...|++..+.|   +...+..+...|. .|     ++++|...|++..
T Consensus       243 aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          243 IA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             Hc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            87 32   55566666666 3  46789999999999988875   6677777777776 45     8999999998877


Q ss_pred             hcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHHHhC
Q 016681          296 YKSISPTLPAYTSLISSLCQ----CGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLE----KGNKAKALHLCEEMVSE  367 (384)
Q Consensus       296 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~  367 (384)
                       .|   +......|...|..    ..++++|..+|++..+.|   +......|...|..    ..+.++|..+++...+.
T Consensus       315 -~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~  387 (452)
T 3e4b_A          315 -GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ  387 (452)
T ss_dssp             -TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred             -CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence             33   55666767777665    348899999999888876   34455566666653    45888899998888887


Q ss_pred             CCC
Q 016681          368 GLK  370 (384)
Q Consensus       368 ~~~  370 (384)
                      |..
T Consensus       388 g~~  390 (452)
T 3e4b_A          388 DTP  390 (452)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            753

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=2.4e-16  Score=127.33  Aligned_cols=224  Identities=12%  Similarity=0.003  Sum_probs=116.2

Q ss_pred             hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCc----HHhH
Q 016681           23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRC--SPM----VIVN   96 (384)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~   96 (384)
                      ...|..+...+...|++++|...|+...+..  .+...+..+...+...|++++|.+.+++......  .++    ..++
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            4456666666666777777777777666655  4566666666666666777777666666554320  011    3555


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 016681           97 TSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY  176 (384)
Q Consensus        97 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  176 (384)
                      ..+...+...|++++|.+.+++.....  |+.       ..+.+.|++++|...++.+..... .+...+..+...+...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence            556666666666666666666655532  221       223344555555555555544311 1333444455555555


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681          177 GKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGML  256 (384)
Q Consensus       177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  256 (384)
                      |++++|...+++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...+
T Consensus       153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~  230 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETL  230 (258)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            55555555555554433 223344444444444445555555544444443322 3344444444444444444444444


Q ss_pred             HHHH
Q 016681          257 TLAL  260 (384)
Q Consensus       257 ~~~~  260 (384)
                      +.+.
T Consensus       231 ~~a~  234 (258)
T 3uq3_A          231 DAAR  234 (258)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.77  E-value=1.4e-16  Score=124.96  Aligned_cols=209  Identities=15%  Similarity=0.025  Sum_probs=101.6

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 016681          126 HDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLI  205 (384)
Q Consensus       126 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  205 (384)
                      ++...+..+...+.+.|++++|...|++..+.... +...+..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            34455555555566666666666666665554222 45555555566666666666666666555543 22334455555


Q ss_pred             HHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 016681          206 EGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQ  285 (384)
Q Consensus       206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  285 (384)
                      ..+...+..            .   ..         .....|++++|...+++..+..+. +...+..+...+...|+++
T Consensus        81 ~~~~~~~~~------------~---~~---------~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~  135 (217)
T 2pl2_A           81 EAYVALYRQ------------A---ED---------RERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERD  135 (217)
T ss_dssp             HHHHHHHHT------------C---SS---------HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhh------------h---hh---------hcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChH
Confidence            555544000            0   00         000115555555555555554322 4455555555555666666


Q ss_pred             HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHH
Q 016681          286 EVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEM  364 (384)
Q Consensus       286 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  364 (384)
                      +|...|++..+..  .+...+..+..++...|++++|...|++..+..+. +...+..+...+...|++++|...+++.
T Consensus       136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            6666666555554  44555555555666666666666666665554332 4455555555666666666666555543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.74  E-value=2.2e-15  Score=122.73  Aligned_cols=164  Identities=10%  Similarity=-0.005  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 016681          166 YTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE  245 (384)
Q Consensus       166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  245 (384)
                      |..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+...+..
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~  154 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHH
Confidence            3344444444444444444444444332 122234444444444444444444444444443221 23333333312222


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC-CCCC------hhhHHHHHHHHHh
Q 016681          246 CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGE---IQEVLKLYYEMEYKS-ISPT------LPAYTSLISSLCQ  315 (384)
Q Consensus       246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~  315 (384)
                      .+++++|...++.+.+..+. +...+..+...+...++   +++|...++++.+.. -.|+      ..+|..+...+..
T Consensus       155 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (272)
T 3u4t_A          155 NKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI  233 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence            23445555555444443211 23444444444444444   444444444443221 0111      1244445555555


Q ss_pred             cCChHHHHHHHHHHhhC
Q 016681          316 CGKLEEADKYFKIMKSH  332 (384)
Q Consensus       316 ~g~~~~a~~~~~~~~~~  332 (384)
                      .|++++|...|+++.+.
T Consensus       234 ~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          234 NRDKVKADAAWKNILAL  250 (272)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhc
Confidence            55555555555555554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.74  E-value=5e-14  Score=132.39  Aligned_cols=307  Identities=14%  Similarity=0.112  Sum_probs=227.0

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      +|.+++|..+|++..     ....+.+.++.   ..+++++|.++.++.      -+..+|..+..++...|++++|++.
T Consensus      1062 lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A         1062 NELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred             CCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            477888888888863     12333333333   667888888887754      2577888888999999999999998


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS  160 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  160 (384)
                      |.+.      .|...|..++.++.+.|++++|.+.+...++...  ++...+.++.+|++.+++++.....    +   .
T Consensus      1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A         1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred             HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence            8653      4677788888999999999999999988777653  3223334788888888887544332    2   2


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 016681          161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI  240 (384)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  240 (384)
                      ++...|..+...|...|++++|..+|...         ..|..+..++.+.|++++|.+.+++.      .+..+|..+.
T Consensus      1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A         1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence            35667777888889999999999999884         36888889999999999999988877      2567888888


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--CC
Q 016681          241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQC--GK  318 (384)
Q Consensus       241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~  318 (384)
                      .+|...|++..|......+     ..++..+..++..|.+.|.+++|+.+++...... +-+...|+-+...+++.  ++
T Consensus      1258 ~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A         1258 FACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred             HHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHH
Confidence            8888888888888766542     2366778899999999999999999998887654 44455676666666653  34


Q ss_pred             hHHHHHHHHHHhhCCCC------CCHhHHHHHHHHHhccCCHHHHHH
Q 016681          319 LEEADKYFKIMKSHSLV------PGVDIYESLVGIHLEKGNKAKALH  359 (384)
Q Consensus       319 ~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~  359 (384)
                      ..++.++|..-..  +.      -+...|..++..|.+.|+++.|..
T Consensus      1332 lmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1332 MREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             HHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            4445555443222  21      246779999999999999999984

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.74  E-value=3e-15  Score=126.87  Aligned_cols=249  Identities=12%  Similarity=0.078  Sum_probs=182.3

Q ss_pred             HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 016681           93 VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRN-LESALVVYEEMLKRGFSANSFVYTTFIG  171 (384)
Q Consensus        93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~  171 (384)
                      ...|..+...+...|++++|++.+++++..... +..+|+.+..++...|+ +++|...|+++.+.... +...|..+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence            456777777777888888888888888876544 67777778888888885 88888888888776443 6777888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChH
Q 016681          172 AYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE-CGNAK  250 (384)
Q Consensus       172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~  250 (384)
                      ++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++++.++. +...|+.+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence            8888888888888888887765 455677788888888888888888888888887655 67788888888887 55546


Q ss_pred             HH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC------
Q 016681          251 QA-----NGMLTLALDKGFSPNEITYSHLIGGYAKEG--EIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCG------  317 (384)
Q Consensus       251 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------  317 (384)
                      +|     ...++......+. +...|..+...+...|  ++++|.+.+.++ +.. +.+...+..+...|.+.|      
T Consensus       253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~  329 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN  329 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence            66     4777777776443 6778888888888777  578888888877 332 445667777888887764      


Q ss_pred             ---ChHHHHHHHHHH-hhCCCCCCHhHHHHHHHHHh
Q 016681          318 ---KLEEADKYFKIM-KSHSLVPGVDIYESLVGIHL  349 (384)
Q Consensus       318 ---~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~  349 (384)
                         .+++|.++++++ .+.++. ....|..+...+.
T Consensus       330 ~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~  364 (382)
T 2h6f_A          330 KEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence               258888888888 665432 3455665555443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.74  E-value=4.2e-15  Score=126.00  Aligned_cols=230  Identities=10%  Similarity=0.046  Sum_probs=144.4

Q ss_pred             hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ-LQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      ..+|+.+...+.+.|++++|+..|+++++.... +...|..+..++...|+ +++|+..|+++...+ +.+...|..+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            455666666777777777777777777765332 56667777777777775 777777777777665 556677777777


Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCCHH
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCE-YGKIE  180 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~  180 (384)
                      ++...|++++|+..|+++++.... +...|..+..++.+.|++++|...++++.+.... +...|+.+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence            777777777777777777766544 6667777777777777777777777777766433 56666667666666 44445


Q ss_pred             HH-----HHHHHHHHHcCCCCChhhHHHHHHHHHhcC--chHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC------
Q 016681          181 EA-----NCLMQEMENAGLKPYDETFNLLIEGCAKAK--RIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECG------  247 (384)
Q Consensus       181 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------  247 (384)
                      +|     +..+++..... +-+...|..+...+...|  ++++|++.+.++ +.. ..+...+..+..++.+.|      
T Consensus       253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~  329 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN  329 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence            55     35566655543 233445555555555555  456666666555 222 224455555555555542      


Q ss_pred             ---ChHHHHHHHHHH
Q 016681          248 ---NAKQANGMLTLA  259 (384)
Q Consensus       248 ---~~~~a~~~~~~~  259 (384)
                         ..++|..+++.+
T Consensus       330 ~~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          330 KEDILNKALELCEIL  344 (382)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence               135566666555

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.73  E-value=2.7e-15  Score=122.20  Aligned_cols=234  Identities=9%  Similarity=-0.013  Sum_probs=130.8

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 016681           61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIH--DTIAYSLIVYAK  138 (384)
Q Consensus        61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~  138 (384)
                      +......+...|++++|+..|+++.+.. +.+...+..+...+...|++++|++.+++..+.+..|  ...+|..+...+
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            3344455555666666666666655544 3344455555556666666666666666665532111  122355555666


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHH
Q 016681          139 VKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESL  218 (384)
Q Consensus       139 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  218 (384)
                      ...|++++|.+.|++..+.... +...+..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|.
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666554322 44566666666666666666666666655442 223344444442233334666666


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHhcC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 016681          219 SYCEQMMSRKLLPSCSAFNEMIRRLCECGN---AKQANGMLTLALDKG-FSPN------EITYSHLIGGYAKEGEIQEVL  288 (384)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~~a~  288 (384)
                      ..+++..+..+. +...+..+..++...++   +++|...++.+.+.. ..|+      ...|..+...|.+.|++++|.
T Consensus       163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            666666655432 34555555666666665   566666666655431 0122      245666677777777777777


Q ss_pred             HHHHHHHhcC
Q 016681          289 KLYYEMEYKS  298 (384)
Q Consensus       289 ~~~~~~~~~~  298 (384)
                      +.++++.+..
T Consensus       242 ~~~~~al~~~  251 (272)
T 3u4t_A          242 AAWKNILALD  251 (272)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            7777777654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.73  E-value=6.5e-16  Score=126.09  Aligned_cols=221  Identities=8%  Similarity=-0.058  Sum_probs=105.0

Q ss_pred             hcCChhHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHH
Q 016681           35 KSDRNDLVWRIYQHMLENIRY---PNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEE  111 (384)
Q Consensus        35 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  111 (384)
                      ..|++++|+..|+.+.+....   .+..++..+...+...|++++|...|+++.... +.+..++..+...+...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            345556666666665554211   123445555555556666666666666555543 3445555555555556666666


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681          112 GMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMEN  191 (384)
Q Consensus       112 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  191 (384)
                      |.+.++++.+.... +..++..+...+...|++++|...++++.+..  |+.......+..+...|++++|...++....
T Consensus        96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            66666655554322 34455555555555555555555555555432  2222233333333444555555555544444


Q ss_pred             cCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681          192 AGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP---SCSAFNEMIRRLCECGNAKQANGMLTLALD  261 (384)
Q Consensus       192 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  261 (384)
                      .. +++...+ .++..+...++.++|...+..........   +..++..+...+...|++++|...++.+.+
T Consensus       173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  243 (275)
T 1xnf_A          173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA  243 (275)
T ss_dssp             HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            32 2222222 23333444444455555555443322110   023333344444444444444444444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.72  E-value=9.7e-15  Score=117.51  Aligned_cols=200  Identities=9%  Similarity=-0.064  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016681           59 ATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAK  138 (384)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  138 (384)
                      ..+..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.++++.+.... +...+..+...+
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~  115 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence            445555555666666666666666655543 444556666666666666666666666666554322 455566666666


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHH
Q 016681          139 VKMRNLESALVVYEEMLKRGFSA-NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEES  217 (384)
Q Consensus       139 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  217 (384)
                      ...|++++|.++++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence            66666666666666665522222 34455556666666666666666666665543 23345566666666666666666


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681          218 LSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK  262 (384)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  262 (384)
                      ...++++.+... .+...+..+...+...|++++|...++.+.+.
T Consensus       195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            666666665433 24555666666666667777777766666654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.72  E-value=1.5e-14  Score=116.40  Aligned_cols=202  Identities=17%  Similarity=0.040  Sum_probs=140.4

Q ss_pred             HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 016681           93 VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGA  172 (384)
Q Consensus        93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  172 (384)
                      ...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence            456666777777777777777777777765432 566777777777777777777777777766532 256667777777


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 016681          173 YCEYGKIEEANCLMQEMENAGLKP-YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQ  251 (384)
Q Consensus       173 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  251 (384)
                      +...|++++|.+.++++.+.+..| +...+..+...+...|++++|...+++..+.... +...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence            777777777777777776622223 3456666677777777777777777777665433 56667777777777777777


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016681          252 ANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKS  298 (384)
Q Consensus       252 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  298 (384)
                      |...++.+.+... .+...+..+...+...|+.++|.+.++++.+..
T Consensus       194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            7777777766533 356667777777777777777777777776653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.72  E-value=6e-14  Score=114.34  Aligned_cols=224  Identities=11%  Similarity=-0.015  Sum_probs=144.1

Q ss_pred             cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHH
Q 016681           92 MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK----MRNLESALVVYEEMLKRGFSANSFVYT  167 (384)
Q Consensus        92 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  167 (384)
                      +..++..+...+...|++++|.+.|++..+.+   +..++..+...+..    .+++++|...|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            45566667777777777777777777777633   45566666667777    777777777777776654   556666


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681          168 TFIGAYCE----YGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAK----AKRIEESLSYCEQMMSRKLLPSCSAFNEM  239 (384)
Q Consensus       168 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  239 (384)
                      .+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...+++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            67777777    777777777777766654   34556666666666    667777777777666654   44555556


Q ss_pred             HHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 016681          240 IRRLCE----CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAK----EGEIQEVLKLYYEMEYKSISPTLPAYTSLIS  311 (384)
Q Consensus       240 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  311 (384)
                      ...+..    .+++++|...++...+.+   +...+..+...|..    .+++++|...+++..+.+   +...+..+..
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~  226 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  226 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence            666665    666666666666666542   34555566666666    666666666666666553   1445555556


Q ss_pred             HHHh----cCChHHHHHHHHHHhhCC
Q 016681          312 SLCQ----CGKLEEADKYFKIMKSHS  333 (384)
Q Consensus       312 ~~~~----~g~~~~a~~~~~~~~~~~  333 (384)
                      .|..    .+++++|.+.|++..+.+
T Consensus       227 ~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          227 MQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            6665    666666666666666544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.72  E-value=1.8e-13  Score=128.67  Aligned_cols=315  Identities=14%  Similarity=0.162  Sum_probs=241.6

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML   81 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   81 (384)
                      +++++|.++.++.      -++.+|..+..++.+.|++++|++.|.+.      .|...|..++..+.+.|++++|.+.|
T Consensus      1090 ~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A         1090 GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred             hhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6778888887754      36889999999999999999999999664      47889999999999999999999999


Q ss_pred             HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681           82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA  161 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  161 (384)
                      ....+..  +++...+.++.+|++.+++++...+    ++   .++...|..+...|...|++++|..+|...       
T Consensus      1158 ~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A         1158 QMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred             HHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence            9887764  3333444589999999988854433    22   346667778999999999999999999885       


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681          162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR  241 (384)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  241 (384)
                        ..|..+...+.+.|++++|.+.+++.      .+..+|..+-.+|...|++..|......+     ..++..+..++.
T Consensus      1222 --~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~ 1288 (1630)
T 1xi4_A         1222 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELIN 1288 (1630)
T ss_pred             --hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHH
Confidence              48999999999999999999999876      34488999999999999999988866542     336677889999


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCC------ChhhHHHHHHHH
Q 016681          242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE--GEIQEVLKLYYEMEYKSISP------TLPAYTSLISSL  313 (384)
Q Consensus       242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~  313 (384)
                      .|.+.|.+++|..+++...... +-....|+-+...|++.  ++..++.+.|..-.  +++|      +...|..++..|
T Consensus      1289 yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY 1365 (1630)
T 1xi4_A         1289 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLY 1365 (1630)
T ss_pred             HHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHH
Confidence            9999999999999998888654 33556777777777753  34444555544322  2333      456799999999


Q ss_pred             HhcCChHHHHHHH-------------HHHhhCCCCCCHhHHHHHHHHHhccC---------------CHHHHHHHHH
Q 016681          314 CQCGKLEEADKYF-------------KIMKSHSLVPGVDIYESLVGIHLEKG---------------NKAKALHLCE  362 (384)
Q Consensus       314 ~~~g~~~~a~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~  362 (384)
                      .+.|+++.|....             +....  -..++..|...+.-|...+               +++++.+++.
T Consensus      1366 ~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A         1366 DKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred             HhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence            9999999988322             22221  1336777777777777666               6666666665

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.72  E-value=8.3e-14  Score=113.49  Aligned_cols=224  Identities=11%  Similarity=0.007  Sum_probs=116.2

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh----hcchHHHHHHHHHHHHcCCCCCHHHHH
Q 016681           57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ----EERIEEGMVLLKRMLRKNMIHDTIAYS  132 (384)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  132 (384)
                      +..++..+...+...|++++|...|++..+.   .+...+..+...+..    .+++++|.+.|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            3444455555555555555555555555542   233444455555555    555555555555555543   444555


Q ss_pred             HHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 016681          133 LIVYAKVK----MRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCE----YGKIEEANCLMQEMENAGLKPYDETFNLL  204 (384)
Q Consensus       133 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  204 (384)
                      .+...+..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            55555555    555555555555555542   44455555555555    555555555555555543   22344444


Q ss_pred             HHHHHh----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016681          205 IEGCAK----AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE----CGNAKQANGMLTLALDKGFSPNEITYSHLIG  276 (384)
Q Consensus       205 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  276 (384)
                      ...|..    .+++++|...+++..+.+   +...+..+...+..    .+++++|...++...+.+   +...+..+..
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~  226 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  226 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence            444444    555555555555555442   33444555555555    555555555555555442   1344445555


Q ss_pred             HHHh----cCCHHHHHHHHHHHHhcC
Q 016681          277 GYAK----EGEIQEVLKLYYEMEYKS  298 (384)
Q Consensus       277 ~~~~----~~~~~~a~~~~~~~~~~~  298 (384)
                      .|..    .+++++|.+.|++..+.+
T Consensus       227 ~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          227 MQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            5555    555555555555555443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.72  E-value=1.8e-14  Score=113.69  Aligned_cols=202  Identities=9%  Similarity=-0.030  Sum_probs=120.3

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      ++..|..+...+...|++++|.+.++.+.+... .+...+..+...+...|++++|.+.++++.... +.+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            455666666777777777777777777666532 245666666666667777777777777666554 445566666666


Q ss_pred             HHHhh-cchHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 016681          102 RIIQE-ERIEEGMVLLKRMLRKNMIH-DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKI  179 (384)
Q Consensus       102 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (384)
                      .+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+..++...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence            66666 66666666666666522222 244555566666666666666666666655422 2455555666666666666


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 016681          180 EEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMS  226 (384)
Q Consensus       180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  226 (384)
                      ++|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            66666666655533113344455555555555666666655555544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.71  E-value=2.8e-15  Score=119.90  Aligned_cols=198  Identities=14%  Similarity=0.068  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV  139 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  139 (384)
                      .+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...+.
T Consensus        25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~  102 (243)
T 2q7f_A           25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV  102 (243)
T ss_dssp             -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence            44444444455555555555555554433 334445555555555555555555555555444321 3444455555555


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHH
Q 016681          140 KMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLS  219 (384)
Q Consensus       140 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  219 (384)
                      ..|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|..
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence            55555555555555544422 234444455555555555555555555554432 2233444444445555555555555


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681          220 YCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK  262 (384)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  262 (384)
                      .++++.+.... +..++..+..++...|++++|...++.+.+.
T Consensus       181 ~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          181 QFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            55554443322 3444444555555555555555555555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.71  E-value=1.1e-15  Score=124.79  Aligned_cols=245  Identities=10%  Similarity=-0.000  Sum_probs=193.4

Q ss_pred             cchHHHHHHHHHHHhcCC---CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGF---SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYV   78 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   78 (384)
                      |++++|++.|+.+.+...   +.+..+|..+...+...|++++|...|+.+.+... .+..++..+...+...|++++|.
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~   97 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAY   97 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHH
Confidence            789999999999988632   23577899999999999999999999999998743 37889999999999999999999


Q ss_pred             HHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 016681           79 DMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG  158 (384)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  158 (384)
                      ..|+++.... +.+..++..+...+...|++++|.+.++++.+..  |+.......+..+...|++++|...+++.....
T Consensus        98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A           98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            9999999876 6678899999999999999999999999999864  333344445556677899999999998887763


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhh
Q 016681          159 FSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLK---PYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSA  235 (384)
Q Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  235 (384)
                       +++...+ .++..+...++.++|...++........   .+...+..+...+...|++++|...+++..+..+. +   
T Consensus       175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~---  248 (275)
T 1xnf_A          175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-N---  248 (275)
T ss_dssp             -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-T---
T ss_pred             -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-h---
Confidence             3344444 4777788888999999999887653211   11467888999999999999999999999987532 2   


Q ss_pred             HHHHHHHHHhcCChHHHHHHH
Q 016681          236 FNEMIRRLCECGNAKQANGML  256 (384)
Q Consensus       236 ~~~l~~~~~~~~~~~~a~~~~  256 (384)
                      +.....++...|++++|...+
T Consensus       249 ~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHhhHHHH
Confidence            233355666777777777665

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.71  E-value=2.2e-15  Score=120.50  Aligned_cols=211  Identities=11%  Similarity=0.067  Sum_probs=164.4

Q ss_pred             CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 016681           21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLI  100 (384)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  100 (384)
                      .++..|..+...+...|++++|...|+.+.+... .+...+..+...+...|++++|...++++.... +.+...+..+.
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   98 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG   98 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence            4667788888999999999999999999988643 368889999999999999999999999998876 66788999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Q 016681          101 LRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE  180 (384)
Q Consensus       101 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  180 (384)
                      ..+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999887543 678888899999999999999999999988743 36788899999999999999


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHH
Q 016681          181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFN  237 (384)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  237 (384)
                      +|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...+.
T Consensus       177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~  231 (243)
T 2q7f_A          177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALH  231 (243)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred             HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHH
Confidence            9999999998765 455678899999999999999999999999887544 444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.71  E-value=3.2e-14  Score=112.20  Aligned_cols=200  Identities=9%  Similarity=-0.028  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016681           58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA  137 (384)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  137 (384)
                      ...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.... +..++..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~   85 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence            3344455555555555555555555555443 334445555555555555555555555555544321 34444445555


Q ss_pred             HHhc-CChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchH
Q 016681          138 KVKM-RNLESALVVYEEMLKRGFSA-NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIE  215 (384)
Q Consensus       138 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  215 (384)
                      +... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence            5555 55555555555554421111 13344444444555555555555554444432 122333444444444444444


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681          216 ESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLAL  260 (384)
Q Consensus       216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  260 (384)
                      +|...+++..+..+..+...+..+...+...|+.+.+...++.+.
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            444444444433221133333333333444444444444444433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.67  E-value=7.4e-15  Score=126.86  Aligned_cols=176  Identities=11%  Similarity=0.005  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCC
Q 016681          179 IEEANCLMQEMENA----GLKP-YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLL-PS----CSAFNEMIRRLCECGN  248 (384)
Q Consensus       179 ~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~  248 (384)
                      +++|...+++..+.    +..| ...++..+...+...|++++|...+++..+.... ++    ..++..+...+...|+
T Consensus       163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  242 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  242 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            56666555554321    1011 1234555666666667777776666665443111 11    2356666677777777


Q ss_pred             hHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCC
Q 016681          249 AKQANGMLTLALDKGFS-PN----EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS-PT----LPAYTSLISSLCQCGK  318 (384)
Q Consensus       249 ~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~  318 (384)
                      +++|...++...+.... ++    ..++..+...+...|++++|...+++..+.... ++    ..++..+...+...|+
T Consensus       243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  322 (406)
T 3sf4_A          243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN  322 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            77777777666542110 11    445667777777778888888777776543100 11    3456667777778888


Q ss_pred             hHHHHHHHHHHhhC----CCC-CCHhHHHHHHHHHhccCCH
Q 016681          319 LEEADKYFKIMKSH----SLV-PGVDIYESLVGIHLEKGNK  354 (384)
Q Consensus       319 ~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~  354 (384)
                      +++|...+++..+.    +.. ....++..+...+...|+.
T Consensus       323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            88888887776542    111 1234455666666666654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.66  E-value=1.9e-14  Score=125.68  Aligned_cols=315  Identities=15%  Similarity=0.056  Sum_probs=213.8

Q ss_pred             HHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681           29 LIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQL---QTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ  105 (384)
Q Consensus        29 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  105 (384)
                      +...+.+.|++++|.++|+...+.|   +...+..+...+...|+.   ++|..+|++..+.    ++..+..+...+..
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence            5677788999999999999998875   334455566666777887   8999999998754    55666667664554


Q ss_pred             hc-----chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 016681          106 EE-----RIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE---SALVVYEEMLKRGFSANSFVYTTFIGAYCEYG  177 (384)
Q Consensus       106 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (384)
                      .+     ++++|+..|++..+.|..   ..+..+...|...+..+   .+.+.+......|   +......+...|...+
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~  155 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG  155 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred             CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence            44     889999999999998743   36666777777665543   4555555555444   3556777888888888


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---chHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CChH
Q 016681          178 KIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAK---RIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC----GNAK  250 (384)
Q Consensus       178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~  250 (384)
                      .++++......+.+.-...+...+..+...|.+.|   +.++|+..|++..+.+.. +...+..+...|...    ++++
T Consensus       156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~  234 (452)
T 3e4b_A          156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK  234 (452)
T ss_dssp             CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred             CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence            66555554333333222233347888888888899   999999999999998754 555556677777554    7999


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-----ChHHH
Q 016681          251 QANGMLTLALDKGFSPNEITYSHLIGG-Y--AKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCG-----KLEEA  322 (384)
Q Consensus       251 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a  322 (384)
                      +|...|+... .|   +...+..+... +  ...+++++|...|++..+.|   +...+..|...|. .|     ++++|
T Consensus       235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A  306 (452)
T 3e4b_A          235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA  306 (452)
T ss_dssp             HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred             HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence            9999999988 43   55666677666 4  46899999999999999887   5667777877777 55     99999


Q ss_pred             HHHHHHHhhCCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCC
Q 016681          323 DKYFKIMKSHSLVPGVDIYESLVGIHLE----KGNKAKALHLCEEMVSEGL  369 (384)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~  369 (384)
                      ...|++.. .|   +...+..|...|..    ..++++|..+|++..+.|.
T Consensus       307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  353 (452)
T 3e4b_A          307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ  353 (452)
T ss_dssp             HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence            99999888 43   67778888877766    4499999999999988775

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.65  E-value=1.1e-14  Score=126.05  Aligned_cols=117  Identities=15%  Similarity=0.107  Sum_probs=61.8

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH----HhHHHHHHHHHhhcchHHHHHHHHHHHHc----C-CCCCHHHH
Q 016681           61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV----IVNTSLILRIIQEERIEEGMVLLKRMLRK----N-MIHDTIAY  131 (384)
Q Consensus        61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~  131 (384)
                      +..+...+...|++++|...|+++.+.. +.+.    .++..+...+...|++++|...+++..+.    + ......++
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  129 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS  129 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence            3444555666666666666666666543 2222    35556666666666666666666665442    1 01123445


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCChHHHHHHHHHHHhcCC
Q 016681          132 SLIVYAKVKMRNLESALVVYEEMLKR----G-FSANSFVYTTFIGAYCEYGK  178 (384)
Q Consensus       132 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~  178 (384)
                      ..+...+...|++++|...+++..+.    + ......++..+...|...|+
T Consensus       130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            55555566666666666666555432    1 01122344455555555555

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.65  E-value=1.4e-14  Score=125.07  Aligned_cols=300  Identities=12%  Similarity=-0.019  Sum_probs=223.1

Q ss_pred             CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCC-
Q 016681           20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN----EATIRTLISALCKGGQLQTYVDMLDRIHGK----RCS-   90 (384)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-   90 (384)
                      ......+......+...|++++|...|+...+.... +    ..++..+...+...|++++|...+++....    +.. 
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            346667778888999999999999999999987432 3    357788889999999999999999886532    212 


Q ss_pred             CcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------hH
Q 016681           91 PMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI-HD----TIAYSLIVYAKVKMRN--------------------LE  145 (384)
Q Consensus        91 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~--------------------~~  145 (384)
                      ....++..+...+...|++++|...+++....... ++    ..++..+...+...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            23567888889999999999999999987753211 12    4477788888999999                    99


Q ss_pred             HHHHHHHHHHHc----CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCchH
Q 016681          146 SALVVYEEMLKR----GFS-ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL-KPY----DETFNLLIEGCAKAKRIE  215 (384)
Q Consensus       146 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~  215 (384)
                      +|...+++..+.    +.. ....++..+...+...|++++|...+++..+... .++    ..++..+...+...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999998887543    111 1234678888999999999999999988865310 111    237788888999999999


Q ss_pred             HHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHH
Q 016681          216 ESLSYCEQMMSRKLL-PS----CSAFNEMIRRLCECGNAKQANGMLTLALDKGFS-PN----EITYSHLIGGYAKEGEIQ  285 (384)
Q Consensus       216 ~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~  285 (384)
                      +|...+++..+.... .+    ..++..+...+...|++++|...++...+.... ++    ..++..+...|...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            999999987653211 11    457788889999999999999999887753111 12    557788889999999999


Q ss_pred             HHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCChH
Q 016681          286 EVLKLYYEMEYK----SI-SPTLPAYTSLISSLCQCGKLE  320 (384)
Q Consensus       286 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~  320 (384)
                      +|...+++..+.    +. .....++..+...+...|+..
T Consensus       325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            999999987654    11 112345566666777666553

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.64  E-value=1e-14  Score=126.26  Aligned_cols=237  Identities=12%  Similarity=-0.022  Sum_probs=157.9

Q ss_pred             hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhC----C-CCCcH
Q 016681           23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNE----ATIRTLISALCKGGQLQTYVDMLDRIHGK----R-CSPMV   93 (384)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~   93 (384)
                      ...+..+...+...|++++|...|+.+.+.... +.    ..+..+...+...|++++|...+++....    + .+...
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            344556777889999999999999999987433 33    47888889999999999999999987653    1 13346


Q ss_pred             HhHHHHHHHHHhhcchHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCC-----------------hHHHHHHH
Q 016681           94 IVNTSLILRIIQEERIEEGMVLLKRMLRKN-----MIHDTIAYSLIVYAKVKMRN-----------------LESALVVY  151 (384)
Q Consensus        94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~  151 (384)
                      .++..+...+...|++++|...+++.....     ......++..+...+...|+                 +++|.+.+
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            788889999999999999999999877641     11134577788888999999                 88888888


Q ss_pred             HHHHHc----CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCchHHHHHHH
Q 016681          152 EEMLKR----GF-SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL-KPY----DETFNLLIEGCAKAKRIEESLSYC  221 (384)
Q Consensus       152 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~  221 (384)
                      ++..+.    +. ......+..+...+...|++++|...+++..+... .++    ...+..+...+...|++++|...+
T Consensus       207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  286 (411)
T 4a1s_A          207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY  286 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            776542    11 11234666777788888888888888877654310 011    124555556666666666666666


Q ss_pred             HHHHhCCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681          222 EQMMSRKLL-----PSCSAFNEMIRRLCECGNAKQANGMLTLAL  260 (384)
Q Consensus       222 ~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  260 (384)
                      ++..+....     ....++..+...+...|++++|...++...
T Consensus       287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  330 (411)
T 4a1s_A          287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL  330 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            655432110     012334444444445555555555444443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.64  E-value=8.8e-14  Score=106.10  Aligned_cols=173  Identities=10%  Similarity=0.018  Sum_probs=97.5

Q ss_pred             hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016681          199 ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGY  278 (384)
Q Consensus       199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  278 (384)
                      ..|..+...+.+.|++++|+..|++..+..+. +..++..+..++.+.|++++|...+......... +...+..+...+
T Consensus         6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~   83 (184)
T 3vtx_A            6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSAN   83 (184)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHH
Confidence            44555555555555555555555555554433 4455555555555566666666655555554322 444555555555


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHH
Q 016681          279 AKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKAL  358 (384)
Q Consensus       279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  358 (384)
                      ...++++.+...+.+..+.. +.+...+..+...+.+.|++++|++.|++..+..+. +...|..+..+|.+.|++++|.
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHH
Confidence            56666666666666655543 334455555666666666666666666666654433 4556666666666666666666


Q ss_pred             HHHHHHHhCCCCCCccccc
Q 016681          359 HLCEEMVSEGLKPSTSYLC  377 (384)
Q Consensus       359 ~~~~~~~~~~~~p~~~~~~  377 (384)
                      +.|++.++.  .|+...|.
T Consensus       162 ~~~~~al~~--~p~~a~~~  178 (184)
T 3vtx_A          162 KYFKKALEK--EEKKAKYE  178 (184)
T ss_dssp             HHHHHHHHT--THHHHHHC
T ss_pred             HHHHHHHhC--CccCHHHH
Confidence            666666553  34443333

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.64  E-value=6.4e-13  Score=110.16  Aligned_cols=218  Identities=10%  Similarity=0.044  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHhcCCCCchhhHHHHHHHHhh-------cCCh-------hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 016681            5 EVAFDVCRYLEQRGFSLSLISFNTLIHVVTK-------SDRN-------DLVWRIYQHMLENIRYPNEATIRTLISALCK   70 (384)
Q Consensus         5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   70 (384)
                      ++|+.+|++..... +.++..|..++..+..       .|++       ++|..+|++.++.-.+.+...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            45555666655542 3355555555555442       3443       5555555555542111134455555555555


Q ss_pred             cCChHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHHH
Q 016681           71 GGQLQTYVDMLDRIHGKRCSPMVI-VNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV-KMRNLESAL  148 (384)
Q Consensus        71 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~  148 (384)
                      .|++++|..+|++..+.. +.+.. +|..++..+.+.|++++|.++|++.++... ++...|........ ..|+.++|.
T Consensus       112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence            555555555555555432 22222 455555555555555555555555554432 12223322221111 135555555


Q ss_pred             HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681          149 VVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG-LKP--YDETFNLLIEGCAKAKRIEESLSYCEQMM  225 (384)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  225 (384)
                      .+|+...+... .+...|..++..+.+.|++++|..+|++..... ++|  ....|..++....+.|+.+.|..+++++.
T Consensus       190 ~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          190 KIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55555544321 134444455555555555555555555554431 222  12344444444444455555555554444


Q ss_pred             h
Q 016681          226 S  226 (384)
Q Consensus       226 ~  226 (384)
                      +
T Consensus       269 ~  269 (308)
T 2ond_A          269 T  269 (308)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.63  E-value=2.7e-14  Score=119.87  Aligned_cols=134  Identities=19%  Similarity=0.097  Sum_probs=90.6

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----h
Q 016681          234 SAFNEMIRRLCECGNAKQANGMLTLALDKGFS-P----NEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS-PT----L  303 (384)
Q Consensus       234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~  303 (384)
                      .++..+...+...|++++|...++...+.... +    ....+..+...+...|++++|...+++..+.... ++    .
T Consensus       184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  263 (338)
T 3ro2_A          184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA  263 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            35566666777777777777777766542100 1    1236677777788888888888888876543100 11    3


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHhhCC-----CCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          304 PAYTSLISSLCQCGKLEEADKYFKIMKSHS-----LVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       304 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      .++..+...+...|++++|...+++..+..     ......++..+...+...|++++|...+++..+.
T Consensus       264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            466777788888899999988888776521     1111346777888888999999999999888764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.63  E-value=2.4e-14  Score=120.19  Aligned_cols=277  Identities=12%  Similarity=-0.020  Sum_probs=147.9

Q ss_pred             hhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhC----CC-CCcHH
Q 016681           24 ISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN----EATIRTLISALCKGGQLQTYVDMLDRIHGK----RC-SPMVI   94 (384)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~   94 (384)
                      ..+......+...|++++|...|+++.+.... +    ...+..+...+...|++++|.+.+++....    +. +....
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            34455566677788888888888887775322 2    345667777777778888887777765432    11 12245


Q ss_pred             hHHHHHHHHHhhcchHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------hHHHHH
Q 016681           95 VNTSLILRIIQEERIEEGMVLLKRMLRKNMI-HD----TIAYSLIVYAKVKMRN--------------------LESALV  149 (384)
Q Consensus        95 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~--------------------~~~a~~  149 (384)
                      ++..+...+...|++++|...+++..+.... ++    ..++..+...+...|+                    +++|.+
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            5666667777777777777777766542110 11    2245555566666666                    566665


Q ss_pred             HHHHHHHc----CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCchHHHHHHHHH
Q 016681          150 VYEEMLKR----GFS-ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL-KPYDETFNLLIEGCAKAKRIEESLSYCEQ  223 (384)
Q Consensus       150 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  223 (384)
                      .+++..+.    +.. .....+..+...+...|++++|...+++..+... .++                          
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------------  218 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--------------------------  218 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--------------------------
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC--------------------------
Confidence            55554321    100 0122344445555555555555555554432100 000                          


Q ss_pred             HHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016681          224 MMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFS-PN----EITYSHLIGGYAKEGEIQEVLKLYYEMEYKS  298 (384)
Q Consensus       224 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  298 (384)
                           ......++..+...+...|++++|...++...+.... ++    ..++..+...+...|++++|...+++..+..
T Consensus       219 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  293 (338)
T 3ro2_A          219 -----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  293 (338)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence                 0001123444444555555555555555444321100 01    3445555666666666666666666554321


Q ss_pred             ----C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681          299 ----I-SPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH  332 (384)
Q Consensus       299 ----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  332 (384)
                          - .....++..+...+...|++++|...+++..+.
T Consensus       294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence                0 011235556666777777777777777766653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.63  E-value=1.1e-12  Score=108.67  Aligned_cols=217  Identities=9%  Similarity=0.051  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh-------hcch-------HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 016681           75 QTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ-------EERI-------EEGMVLLKRMLRK-NMIHDTIAYSLIVYAKV  139 (384)
Q Consensus        75 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~  139 (384)
                      ++|...|++..... +.++..|..++..+..       .|++       ++|..+|++.+.. .. -+...|..++..+.
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence            34445555554433 4445555555444432       2332       4444444444442 11 13334444444444


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCchHHH
Q 016681          140 KMRNLESALVVYEEMLKRGFSANSF-VYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCA-KAKRIEES  217 (384)
Q Consensus       140 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a  217 (384)
                      +.|++++|..+|+++.+.... +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence            444555555555444442111 121 44444444444444444444444444332 112222221111111 13444444


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681          218 LSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKG-FSP--NEITYSHLIGGYAKEGEIQEVLKLYYEM  294 (384)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~  294 (384)
                      ..+|+...+..+. +...|..++..+.+.|++++|..+|++..... .+|  ....|..++....+.|+.+.|..+++++
T Consensus       189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4444444333221 33344444444444444444444444444321 121  2233444444444444444444444444


Q ss_pred             Hh
Q 016681          295 EY  296 (384)
Q Consensus       295 ~~  296 (384)
                      .+
T Consensus       268 ~~  269 (308)
T 2ond_A          268 FT  269 (308)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.62  E-value=1.2e-13  Score=121.54  Aligned_cols=215  Identities=7%  Similarity=-0.050  Sum_probs=138.6

Q ss_pred             ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHH
Q 016681           38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQL-QTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLL  116 (384)
Q Consensus        38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  116 (384)
                      .+++++..++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+...|...|++++|.+.|
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3556666666554432 23566666666777777777 77777777766654 445666777777777777777777777


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc--------CCH
Q 016681          117 KRMLRKNMIHDTIAYSLIVYAKVKM---------RNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY--------GKI  179 (384)
Q Consensus       117 ~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~  179 (384)
                      ++..+..  |+...+..+...+...         |++++|.+.+++..+.... +...|..+..+|...        |++
T Consensus       161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence            7776653  4456666666666666         7777777777776665322 556666666666666        667


Q ss_pred             HHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681          180 EEANCLMQEMENAGLK---PYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGML  256 (384)
Q Consensus       180 ~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  256 (384)
                      ++|+..|++..+.. +   .+...|..+..+|...|++++|...|++..+..+. +...+..+..++...|++++|...+
T Consensus       238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77777777766643 2   34566666777777777777777777777665443 4556666666667777777666655


Q ss_pred             HHH
Q 016681          257 TLA  259 (384)
Q Consensus       257 ~~~  259 (384)
                      ..+
T Consensus       316 ~~~  318 (474)
T 4abn_A          316 GKT  318 (474)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.62  E-value=1.8e-13  Score=117.30  Aligned_cols=129  Identities=12%  Similarity=-0.045  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCChhh
Q 016681          235 AFNEMIRRLCECGNAKQANGMLTLALDK----GF-SPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK----SISPTLPA  305 (384)
Q Consensus       235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~  305 (384)
                      ++..+..++...|++++|...+++..+.    +. +....++..+...+.+.|++++|...+++..+.    +-+.....
T Consensus       226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  305 (383)
T 3ulq_A          226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE  305 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4455555555666666666655555441    11 223445566666666666666666666655432    11111222


Q ss_pred             HHHHHHHHHhcCC---hHHHHHHHHHHhhCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          306 YTSLISSLCQCGK---LEEADKYFKIMKSHSLVP-GVDIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       306 ~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      +..+...+...|+   +++|..++++.   +..| ....+..+...|...|++++|...+++..+
T Consensus       306 ~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          306 FEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4555566666666   55555555554   2112 234556677777777777777777777654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.60  E-value=5e-13  Score=114.55  Aligned_cols=294  Identities=9%  Similarity=0.006  Sum_probs=212.0

Q ss_pred             HhhcCChhHHHHHHHHHHhc--CCCCCHH--HHHHHHHH--HHccCChHHHH-----------HHHHHHHhCCCCCcHHh
Q 016681           33 VTKSDRNDLVWRIYQHMLEN--IRYPNEA--TIRTLISA--LCKGGQLQTYV-----------DMLDRIHGKRCSPMVIV   95 (384)
Q Consensus        33 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~   95 (384)
                      +.+.+++++|..+++.+.+.  ....|..  .|-.++..  ..-.+.++.+.           +.++.+....  .+...
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~   99 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG   99 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence            46789999999999998765  2333443  33444332  22334555555           7777776532  22222


Q ss_pred             HHH------HHHHHHhhcchHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C--
Q 016681           96 NTS------LILRIIQEERIEEGMVLLKRMLRK----NMIH-DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS-A--  161 (384)
Q Consensus        96 ~~~------l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~--  161 (384)
                      +..      ....+...|++++|...+++..+.    +..+ ...++..+...+...|+++.|...+++..+.... +  
T Consensus       100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  179 (383)
T 3ulq_A          100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY  179 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence            222      556677899999999999999874    1111 3467888889999999999999999998764111 1  


Q ss_pred             ---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCchHHHHHHHHHHHh-----CC
Q 016681          162 ---NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL-KPY----DETFNLLIEGCAKAKRIEESLSYCEQMMS-----RK  228 (384)
Q Consensus       162 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~  228 (384)
                         ...+++.+..+|...|++++|...+++..+... .++    ..++..+...|...|++++|...+++..+     ..
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence               135678888999999999999999998875321 111    24788888999999999999999999877     33


Q ss_pred             CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCC
Q 016681          229 LLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKG----FSPNEITYSHLIGGYAKEGE---IQEVLKLYYEMEYKSISP  301 (384)
Q Consensus       229 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~  301 (384)
                      .+....++..+...+...|++++|...++...+..    .+.....+..+...+...|+   .++|..++++.   +..|
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~  336 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA  336 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence            13346778899999999999999999999887531    11122335667788888898   77777777765   2222


Q ss_pred             -ChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681          302 -TLPAYTSLISSLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       302 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  331 (384)
                       ....+..+...|...|++++|...+++..+
T Consensus       337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             344677788999999999999999998875

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.60  E-value=6.6e-13  Score=101.19  Aligned_cols=166  Identities=15%  Similarity=0.063  Sum_probs=102.2

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      ++..|..+...+.+.|++++|++.|++.++..+. +..++..+...+.+.|++++|...++...... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            4556666666666666666666666666665332 45566666666666666666666666665554 444555556666


Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE  181 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (384)
                      .+...++++.|.+.+.+....... +...+..+...+.+.|++++|.+.|++..+... .+...+..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence            666666666666666666654332 455566666666666666666666666665532 245556666666666666666


Q ss_pred             HHHHHHHHHH
Q 016681          182 ANCLMQEMEN  191 (384)
Q Consensus       182 a~~~~~~~~~  191 (384)
                      |.+.|++..+
T Consensus       160 A~~~~~~al~  169 (184)
T 3vtx_A          160 AVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6666666655

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.60  E-value=1.7e-13  Score=120.55  Aligned_cols=214  Identities=11%  Similarity=-0.027  Sum_probs=115.4

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 016681          109 IEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNL-ESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQ  187 (384)
Q Consensus       109 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  187 (384)
                      ++++++.+++...... .+...+..+...+...|++ ++|.+.|++..+.... +...|..+..+|...|++++|.+.|+
T Consensus        84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4444444544433321 2445555555555555555 5555555555554221 34555555555555555555555555


Q ss_pred             HHHHcCCCCChhhHHHHHHHHHhc---------CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CChH
Q 016681          188 EMENAGLKPYDETFNLLIEGCAKA---------KRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC--------GNAK  250 (384)
Q Consensus       188 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~  250 (384)
                      +..+..  |+...+..+...+...         |++++|...+++..+..+. +...|..+..++...        |+++
T Consensus       162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence            555432  4445555555555555         5666666666665554433 455555555555555        5566


Q ss_pred             HHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 016681          251 QANGMLTLALDKGFS--PNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKI  328 (384)
Q Consensus       251 ~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  328 (384)
                      +|...|+...+..+.  -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+.+
T Consensus       239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            666666666554220  255566666666666666666666666665543 23344555555666666666666554443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.55  E-value=5.1e-14  Score=116.91  Aligned_cols=243  Identities=17%  Similarity=0.162  Sum_probs=122.0

Q ss_pred             cHHhHHHHHHHHHhhcchHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C
Q 016681           92 MVIVNTSLILRIIQEERIEEGMVLLKRMLRK-------NMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR------G  158 (384)
Q Consensus        92 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~  158 (384)
                      +..++..+...+...|++++|..+++++.+.       ..+....++..+...+...|++++|...+++..+.      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            4566677777777777777777777776652       12223455666666677777777777777666543      1


Q ss_pred             C-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCC
Q 016681          159 F-SANSFVYTTFIGAYCEYGKIEEANCLMQEMENA------GLKP-YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLL  230 (384)
Q Consensus       159 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  230 (384)
                      . +.....+..+...+...|++++|...+++..+.      +..| ....+..+...+...|++++|...+++..+..  
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--  183 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY--  183 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--
Confidence            1 112345555666666666666666666655442      1111 12234444444444455555554444443320  


Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCC
Q 016681          231 PSCSAFNEMIRRLCECGNAKQANGMLTLALDK--GFSP-NEITYSHLIGGYAKEGEIQEVLKLYYEMEYK-------SIS  300 (384)
Q Consensus       231 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~  300 (384)
                                                   .+.  +..| ...++..+...+...|++++|...++++.+.       ...
T Consensus       184 -----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  234 (311)
T 3nf1_A          184 -----------------------------QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD  234 (311)
T ss_dssp             -----------------------------HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             -----------------------------HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence                                         000  1011 2234455555555556666666555555432       111


Q ss_pred             CChh-------hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          301 PTLP-------AYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       301 ~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      +...       .+..+...+...+.+.++...++....... ....++..+..+|...|++++|.+.+++..+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             ---CCHHHHHHHHHHC-------CCSCCCC---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            1111       112222233344555566666666554322 2456677888888888888888888888765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.55  E-value=7.6e-14  Score=115.88  Aligned_cols=171  Identities=13%  Similarity=0.121  Sum_probs=124.2

Q ss_pred             CchhhHHHHHHHHhhcCChhHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC------
Q 016681           21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLEN-------IRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK------   87 (384)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------   87 (384)
                      .+..++..+...+...|++++|...++.+.+.       .......++..+...+...|++++|...+++....      
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            35677888888899999999999999888763       12223556778888888899999999888887653      


Q ss_pred             C-CCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q 016681           88 R-CSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK------NMIH-DTIAYSLIVYAKVKMRNLESALVVYEEMLKR--  157 (384)
Q Consensus        88 ~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--  157 (384)
                      + .+....++..+...+...|++++|.+.+++..+.      +..| ....+..+...+...|++++|.++++++.+.  
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            1 1334567778888888888888888888887754      2112 3455677777888888888888888877654  


Q ss_pred             ----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681          158 ----GFSA-NSFVYTTFIGAYCEYGKIEEANCLMQEMEN  191 (384)
Q Consensus       158 ----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  191 (384)
                          +..| ...++..+..++...|++++|...++++.+
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                1122 344567777788888888888888877764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.55  E-value=2.5e-10  Score=103.40  Aligned_cols=357  Identities=7%  Similarity=-0.004  Sum_probs=200.5

Q ss_pred             HHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHH
Q 016681            7 AFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ---LQTYVDMLDR   83 (384)
Q Consensus         7 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~   83 (384)
                      -+..|+...... +-|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.++   ++.+..+|++
T Consensus        51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR  128 (679)
T 4e6h_A           51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR  128 (679)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence            344455555544 458888888888888888888888888888876 33467778888877777777   8888888888


Q ss_pred             HHhCC-CCCcHHhHHHHHHHHHhhcch--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHHh---------cC
Q 016681           84 IHGKR-CSPMVIVNTSLILRIIQEERI--------EEGMVLLKRMLR-KNM-IH-DTIAYSLIVYAKVK---------MR  142 (384)
Q Consensus        84 ~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~---------~~  142 (384)
                      ..... .+|++..|...+....+.++.        +.+.++|+..+. -|. .| +...|...+.....         .+
T Consensus       129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~  208 (679)
T 4e6h_A          129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ  208 (679)
T ss_dssp             HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence            87654 137777888777665554443        334466666554 344 34 34566665544321         23


Q ss_pred             ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-------------cCCHHHH---------------------------
Q 016681          143 NLESALVVYEEMLKRGFSANSFVYTTFIGAYCE-------------YGKIEEA---------------------------  182 (384)
Q Consensus       143 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a---------------------------  182 (384)
                      +.+.+..+|+.+.......-..+|......-..             ..+++.|                           
T Consensus       209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~  288 (679)
T 4e6h_A          209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE  288 (679)
T ss_dssp             HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence            455566666665542111111122111100000             0011111                           


Q ss_pred             ----------------------------------------HHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHH-HHH
Q 016681          183 ----------------------------------------NCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESL-SYC  221 (384)
Q Consensus       183 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~  221 (384)
                                                              ..+|++....- +-+...|...+..+...|+.++|. .+|
T Consensus       289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il  367 (679)
T 4e6h_A          289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL  367 (679)
T ss_dssp             TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence                                                    22222222211 112233333444444556666675 777


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC---------CCC------------HHHHHHHHHHHHh
Q 016681          222 EQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGF---------SPN------------EITYSHLIGGYAK  280 (384)
Q Consensus       222 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~  280 (384)
                      ++..... +.+...|-..+....+.|++++|..+|+.+.+...         .|+            ...|...+....+
T Consensus       368 ~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR  446 (679)
T 4e6h_A          368 KLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR  446 (679)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence            7776543 23455566666667777777777777777665310         121            2356666666666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHH
Q 016681          281 EGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQC-GKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALH  359 (384)
Q Consensus       281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  359 (384)
                      .|+.+.|..+|.++.+.-..+....|...+..-.+. ++.+.|..+|+...+. ..-+...|...+......|+.+.|..
T Consensus       447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~  525 (679)
T 4e6h_A          447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKS  525 (679)
T ss_dssp             HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHH
Confidence            777777777777776651111223333333333333 3477777777777664 22255566666666667777777777


Q ss_pred             HHHHHHhCC
Q 016681          360 LCEEMVSEG  368 (384)
Q Consensus       360 ~~~~~~~~~  368 (384)
                      +|++.+...
T Consensus       526 lferal~~~  534 (679)
T 4e6h_A          526 LFESSIDKI  534 (679)
T ss_dssp             HHHHHTTTS
T ss_pred             HHHHHHHhc
Confidence            777776654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.55  E-value=1.3e-10  Score=105.30  Aligned_cols=219  Identities=7%  Similarity=-0.080  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681          147 ALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEAN-CLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMM  225 (384)
Q Consensus       147 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  225 (384)
                      +..+|+++... ++-+...|-..+..+...|+.++|. ++|++..... +.+...|...+....+.|+++.|..+|+.+.
T Consensus       328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            34455555554 2335666777777777888988996 9999988643 4455567778888888999999999999987


Q ss_pred             hCC---------CCCC------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CC
Q 016681          226 SRK---------LLPS------------CSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE-GE  283 (384)
Q Consensus       226 ~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~  283 (384)
                      ...         ..|+            ..+|...+....+.|+.+.|..+|..+.+....+....|...+..-.+. ++
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence            641         0132            3467778888888899999999999998761122334444333333344 45


Q ss_pred             HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHhHHHHHHHHHhccCCHHHHHHHH
Q 016681          284 IQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP--GVDIYESLVGIHLEKGNKAKALHLC  361 (384)
Q Consensus       284 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~  361 (384)
                      .+.|..+|+...+. .+-+...+...+......|+.+.|..+|++.......+  ....|..++..-.+.|+.+.+..+.
T Consensus       486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~  564 (679)
T 4e6h_A          486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE  564 (679)
T ss_dssp             CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            89999999999887 34456667788888888999999999999999865422  3467888888888999999999999


Q ss_pred             HHHHhCC
Q 016681          362 EEMVSEG  368 (384)
Q Consensus       362 ~~~~~~~  368 (384)
                      +++.+.-
T Consensus       565 ~R~~~~~  571 (679)
T 4e6h_A          565 KRFFEKF  571 (679)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhC
Confidence            9998753

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.53  E-value=1.6e-11  Score=104.73  Aligned_cols=300  Identities=9%  Similarity=0.037  Sum_probs=204.4

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH----HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC-CCH----HHH
Q 016681           61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV----IVNTSLILRIIQEERIEEGMVLLKRMLRKNMI-HDT----IAY  131 (384)
Q Consensus        61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~  131 (384)
                      .......+...|++++|...+++........+.    ..++.+...+...|++++|.+.+++....... .+.    .++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            344455667789999999999998776422222    25566777888899999999999988753211 122    235


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--Chhh
Q 016681          132 SLIVYAKVKMRNLESALVVYEEMLKR----GFS--A-NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLK--P--YDET  200 (384)
Q Consensus       132 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~  200 (384)
                      ..+...+...|++++|...+++..+.    +..  | ....+..+...+...|++++|...+++.......  +  ...+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            56777888999999999999888653    221  2 2345666788889999999999999988764321  1  1245


Q ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHhCCCCCC-hhhHH-----HHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HHHH
Q 016681          201 FNLLIEGCAKAKRIEESLSYCEQMMSRKLLPS-CSAFN-----EMIRRLCECGNAKQANGMLTLALDKGFSPN---EITY  271 (384)
Q Consensus       201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~  271 (384)
                      +..+...+...|++++|...+++.......++ ...+.     ..+..+...|++++|...++........+.   ...+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            66777888899999999999998865422211 11222     233447789999999999988876432211   2345


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHH
Q 016681          272 SHLIGGYAKEGEIQEVLKLYYEMEYK----SISPTL-PAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVG  346 (384)
Q Consensus       272 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  346 (384)
                      ..+...+...|++++|...+++....    +..++. .++..+..++...|+.++|...+++......  .    ...+.
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~~  330 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFIS  330 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHHH
Confidence            67778888899999999999887543    211222 2556667788889999999999998887321  0    11223


Q ss_pred             HHhccCCHHHHHHHHHHHHhCC
Q 016681          347 IHLEKGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       347 ~~~~~g~~~~a~~~~~~~~~~~  368 (384)
                      .+...|  +....+++.+....
T Consensus       331 ~~~~~g--~~~~~ll~~~~~~~  350 (373)
T 1hz4_A          331 HFVIEG--EAMAQQLRQLIQLN  350 (373)
T ss_dssp             HHHTTH--HHHHHHHHHHHHTT
T ss_pred             HHHHcc--HHHHHHHHHHHhCC
Confidence            445555  56777888777653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.52  E-value=9.4e-12  Score=106.38  Aligned_cols=227  Identities=10%  Similarity=-0.008  Sum_probs=137.9

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCC-CC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---CC-ChhhHHHH
Q 016681          136 YAKVKMRNLESALVVYEEMLKRGF-SA----NSFVYTTFIGAYCEYGKIEEANCLMQEMENAG--L---KP-YDETFNLL  204 (384)
Q Consensus       136 ~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~---~~-~~~~~~~l  204 (384)
                      ..+...|++++|...|++..+... .+    ...++..+..+|...|+++.|...+++..+..  .   .+ ...++..+
T Consensus       109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  188 (378)
T 3q15_A          109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI  188 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence            344566777777777766654310 01    23455566666777777777777766654321  0   11 12455666


Q ss_pred             HHHHHhcCchHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCCHHHHHHH
Q 016681          205 IEGCAKAKRIEESLSYCEQMMSR----KL-LPSCSAFNEMIRRLCECGNAKQANGMLTLALD-----KGFSPNEITYSHL  274 (384)
Q Consensus       205 ~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l  274 (384)
                      ...|...|++++|...+.+..+.    +. .....++..+..++...|++++|...+++..+     ..+. ...++..+
T Consensus       189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l  267 (378)
T 3q15_A          189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGL  267 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHH
Confidence            66677777777777777665542    11 11134566677777777888888877777765     3222 35667777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCC----CChhhHHHHHHHHHhcCC---hHHHHHHHHHHhhCCCCC-CHhHHHHHHH
Q 016681          275 IGGYAKEGEIQEVLKLYYEMEYKSIS----PTLPAYTSLISSLCQCGK---LEEADKYFKIMKSHSLVP-GVDIYESLVG  346 (384)
Q Consensus       275 ~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~  346 (384)
                      ...+.+.|++++|...+++..+..-.    .....+..+...+...++   +.+|...+++.   +..| ....+..+..
T Consensus       268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~  344 (378)
T 3q15_A          268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAA  344 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHH
Confidence            77888888888888888877654211    112234445555666666   66666666652   2222 2345667778


Q ss_pred             HHhccCCHHHHHHHHHHHHh
Q 016681          347 IHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       347 ~~~~~g~~~~a~~~~~~~~~  366 (384)
                      .|...|++++|...+++..+
T Consensus       345 ~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          345 VFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            88888888888888887754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.52  E-value=1.2e-11  Score=105.62  Aligned_cols=308  Identities=9%  Similarity=0.016  Sum_probs=211.1

Q ss_pred             CCchhhHHHHHHHH--hhcCChhHHHHHHHHHHhc--CCCCCHH--HHHHHHHH--HHccCChHHHH---------HHHH
Q 016681           20 SLSLISFNTLIHVV--TKSDRNDLVWRIYQHMLEN--IRYPNEA--TIRTLISA--LCKGGQLQTYV---------DMLD   82 (384)
Q Consensus        20 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~~~l~~~--~~~~~~~~~a~---------~~~~   82 (384)
                      .|+...-+.+-.-|  ...+++++|.++++.+.+.  ....|..  .|-.++..  ..-.+.+..+.         +.++
T Consensus         7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A            7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence            34555555555555  7889999999999988664  2323433  33333332  11112222233         6666


Q ss_pred             HHHhCCCCCc--H--HhHHHHHHHHHhhcchHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016681           83 RIHGKRCSPM--V--IVNTSLILRIIQEERIEEGMVLLKRMLRKNM-IH----DTIAYSLIVYAKVKMRNLESALVVYEE  153 (384)
Q Consensus        83 ~~~~~~~~~~--~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~  153 (384)
                      .+.....+.+  .  ..+......+...|++++|+..+++..+... .+    ...++..+...+...|+++.|...+++
T Consensus        87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~  166 (378)
T 3q15_A           87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ  166 (378)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            6654321111  1  1233344566789999999999999876421 12    245677888899999999999999998


Q ss_pred             HHHcC----C-C-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCchHHHHHHHH
Q 016681          154 MLKRG----F-S-ANSFVYTTFIGAYCEYGKIEEANCLMQEMENA----GLKP-YDETFNLLIEGCAKAKRIEESLSYCE  222 (384)
Q Consensus       154 ~~~~~----~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~  222 (384)
                      ..+..    . . ....+++.+..+|...|++++|.+.+++..+.    +..+ ...++..+...|...|++++|...++
T Consensus       167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~  246 (378)
T 3q15_A          167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ  246 (378)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            87531    1 1 12456788899999999999999999887653    1111 13467788889999999999999999


Q ss_pred             HHHh-----CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 016681          223 QMMS-----RKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGF----SPNEITYSHLIGGYAKEGE---IQEVLKL  290 (384)
Q Consensus       223 ~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~a~~~  290 (384)
                      +..+     ..+. ...++..+...+.+.|++++|...++...+...    +.....+..+...+...++   ..+|...
T Consensus       247 ~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~  325 (378)
T 3q15_A          247 KAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY  325 (378)
T ss_dssp             HHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            9877     4443 377888899999999999999999999886422    2223445666666777788   7777777


Q ss_pred             HHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681          291 YYEMEYKSISP-TLPAYTSLISSLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       291 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  331 (384)
                      +++.   +..| ....+..+...|...|++++|...|++..+
T Consensus       326 ~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          326 FEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7662   2222 234567788999999999999999998765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.51  E-value=3.4e-11  Score=102.69  Aligned_cols=301  Identities=9%  Similarity=0.009  Sum_probs=211.4

Q ss_pred             hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHhCCC---CCc--HHh
Q 016681           25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEA----TIRTLISALCKGGQLQTYVDMLDRIHGKRC---SPM--VIV   95 (384)
Q Consensus        25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~   95 (384)
                      .+......+...|++++|...++.........+..    ++..+...+...|++++|...+++......   .+.  ..+
T Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   95 (373)
T 1hz4_A           16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   95 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            34445566778999999999999988764333332    456677788889999999999998764310   111  234


Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChH
Q 016681           96 NTSLILRIIQEERIEEGMVLLKRMLRK----NMI--H-DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA----NSF  164 (384)
Q Consensus        96 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~  164 (384)
                      +..+...+...|++++|.+.+++....    +..  | ....+..+...+...|++++|...+++........    ...
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            566778889999999999999988753    221  2 23456667888999999999999999987653221    234


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCchHHHHHHHHHHHhCCCCCC---hhh
Q 016681          165 VYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYD-ETFN-----LLIEGCAKAKRIEESLSYCEQMMSRKLLPS---CSA  235 (384)
Q Consensus       165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~  235 (384)
                      .+..+...+...|++++|...+++.......++. ..+.     ..+..+...|++++|...+++.......+.   ...
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            6777888999999999999999988754212211 1222     233447789999999999998876543221   224


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 016681          236 FNEMIRRLCECGNAKQANGMLTLALDK----GFSPNE-ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLI  310 (384)
Q Consensus       236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  310 (384)
                      +..+...+...|++++|...++.....    +..++. ..+..+..++...|+.++|...+++.....  +..    ..+
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~~----g~~  329 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NRT----GFI  329 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH----CCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--ccc----cHH
Confidence            567788899999999999999887643    222222 356667788889999999999999998763  111    122


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCC
Q 016681          311 SSLCQCGKLEEADKYFKIMKSHS  333 (384)
Q Consensus       311 ~~~~~~g~~~~a~~~~~~~~~~~  333 (384)
                      ..+...|  +....+++.+....
T Consensus       330 ~~~~~~g--~~~~~ll~~~~~~~  350 (373)
T 1hz4_A          330 SHFVIEG--EAMAQQLRQLIQLN  350 (373)
T ss_dssp             HHHHTTH--HHHHHHHHHHHHTT
T ss_pred             HHHHHcc--HHHHHHHHHHHhCC
Confidence            3344444  56667777776653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.48  E-value=8.3e-12  Score=94.98  Aligned_cols=165  Identities=15%  Similarity=0.063  Sum_probs=118.5

Q ss_pred             hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016681          199 ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGY  278 (384)
Q Consensus       199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  278 (384)
                      ..+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++.+.+... .+...+..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~   86 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence            34555566666677777777777766655432 566677777777777777777777777776532 3566777777777


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHH
Q 016681          279 AKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKAL  358 (384)
Q Consensus       279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  358 (384)
                      ...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence            78888888888888777664 445667777777888888888888888887775433 5677778888888888888888


Q ss_pred             HHHHHHHhC
Q 016681          359 HLCEEMVSE  367 (384)
Q Consensus       359 ~~~~~~~~~  367 (384)
                      ..++++.+.
T Consensus       165 ~~~~~~~~~  173 (186)
T 3as5_A          165 PHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            888887754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.48  E-value=3.9e-12  Score=116.37  Aligned_cols=168  Identities=15%  Similarity=0.095  Sum_probs=150.4

Q ss_pred             CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 016681           20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSL   99 (384)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   99 (384)
                      +-++.+|+.+...+.+.|++++|++.|++.++.... +..++..+..++.+.|++++|+..|++..+.+ +.+...|..+
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL   83 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM   83 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            346788999999999999999999999999987432 68899999999999999999999999999876 6678999999


Q ss_pred             HHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 016681          100 ILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKI  179 (384)
Q Consensus       100 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  179 (384)
                      ..++...|++++|++.|++.++.... +..+|..+..++.+.|++++|.+.|++..+.... +...+..+..++...|++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence            99999999999999999999987644 7889999999999999999999999999987443 678899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 016681          180 EEANCLMQEMEN  191 (384)
Q Consensus       180 ~~a~~~~~~~~~  191 (384)
                      ++|.+.+++..+
T Consensus       162 ~~A~~~~~kal~  173 (723)
T 4gyw_A          162 TDYDERMKKLVS  173 (723)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998887754

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.48  E-value=1.3e-11  Score=93.85  Aligned_cols=160  Identities=16%  Similarity=0.097  Sum_probs=69.6

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681           26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ  105 (384)
Q Consensus        26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  105 (384)
                      |..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            44444444445555555555444443211 234444444444444444555444444444332 3334444444444444


Q ss_pred             hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 016681          106 EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCL  185 (384)
Q Consensus       106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  185 (384)
                      .|++++|.+.++++..... .+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...
T Consensus        89 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHH
Confidence            4444444444444444321 1333444444444444444444444444443321 1333444444444444444444444


Q ss_pred             HHHH
Q 016681          186 MQEM  189 (384)
Q Consensus       186 ~~~~  189 (384)
                      ++..
T Consensus       167 ~~~~  170 (186)
T 3as5_A          167 FKKA  170 (186)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.45  E-value=5.5e-12  Score=115.40  Aligned_cols=165  Identities=18%  Similarity=0.115  Sum_probs=99.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 016681          163 SFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRR  242 (384)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  242 (384)
                      ...++.+..+|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++..+.++. +...|..+..+
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~   86 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            4556666666666666666666666666543 233455666666666666666666666666655433 45566666666


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 016681          243 LCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEA  322 (384)
Q Consensus       243 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  322 (384)
                      +...|++++|...|++..+.... +...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence            66666666666666666654332 45566666666666666666666666665543 22345555566666666666666


Q ss_pred             HHHHHHHhh
Q 016681          323 DKYFKIMKS  331 (384)
Q Consensus       323 ~~~~~~~~~  331 (384)
                      .+.++++.+
T Consensus       165 ~~~~~kal~  173 (723)
T 4gyw_A          165 DERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666655544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.45  E-value=4.3e-11  Score=94.53  Aligned_cols=206  Identities=8%  Similarity=-0.006  Sum_probs=158.9

Q ss_pred             CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 016681           21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLI  100 (384)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  100 (384)
                      .|+..+......+...|++++|...|+...+....++...+..+...+...|++++|+..|++..+.. +.+...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            46788888999999999999999999999987654688888889999999999999999999999876 66788999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hHHHHHHH
Q 016681          101 LRIIQEERIEEGMVLLKRMLRKNMIHDT-------IAYSLIVYAKVKMRNLESALVVYEEMLKRGFSAN---SFVYTTFI  170 (384)
Q Consensus       101 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~  170 (384)
                      ..+...|++++|++.+++..+.... +.       ..|..+...+...|++++|.+.|++..+.  .|+   ...+..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            9999999999999999999987543 44       45777888889999999999999999876  333   45666777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681          171 GAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM  239 (384)
Q Consensus       171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  239 (384)
                      .+|...|     ...++++...+ ..+...|....  ....+.+++|...+++..+..+. +..+...+
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l  220 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ  220 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence            7776544     33445554443 23334444433  33456789999999999887543 44444433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.43  E-value=5.3e-11  Score=94.00  Aligned_cols=195  Identities=13%  Similarity=0.018  Sum_probs=129.9

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 016681          127 DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIE  206 (384)
Q Consensus       127 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  206 (384)
                      |+..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence            5567777777888888888888888888776543566677777888888888888888888887754 334567777778


Q ss_pred             HHHhcCchHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHH
Q 016681          207 GCAKAKRIEESLSYCEQMMSRKLLPSC-------SAFNEMIRRLCECGNAKQANGMLTLALDKGFSPN---EITYSHLIG  276 (384)
Q Consensus       207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~  276 (384)
                      .+...|++++|...+++..+..+. +.       ..|..+...+...|++++|...++.+.+.  .|+   ...+..+..
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence            888888888888888887776543 34       34666667777778888888888777765  333   345555666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 016681          277 GYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHS  333 (384)
Q Consensus       277 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  333 (384)
                      .|...|     ...++++...+ ..+...|....  ....+.+++|...+++..+..
T Consensus       162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence            654333     33444444443 22333333332  223455777777777777654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.43  E-value=4.5e-12  Score=103.51  Aligned_cols=225  Identities=13%  Similarity=0.080  Sum_probs=156.3

Q ss_pred             cchHHHHHHHHHHHh-------cCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhc------CCCC-CHHHHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQ-------RGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLEN------IRYP-NEATIRTLISA   67 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~   67 (384)
                      |++++|+..|++..+       ...+....++..+...+...|++++|...++...+.      +..| ...++..+...
T Consensus        15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~   94 (283)
T 3edt_B           15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL   94 (283)
T ss_dssp             SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            445555555555433       333446778999999999999999999999998865      2122 35578889999


Q ss_pred             HHccCChHHHHHHHHHHHhC------C-CCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc------CCCC-CHHHHHH
Q 016681           68 LCKGGQLQTYVDMLDRIHGK------R-CSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK------NMIH-DTIAYSL  133 (384)
Q Consensus        68 ~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~  133 (384)
                      +...|++++|.+.+++....      . .+....++..+...+...|++++|.+.+++..+.      +..| ...++..
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  174 (283)
T 3edt_B           95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN  174 (283)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            99999999999999988754      1 1334678888999999999999999999998775      1122 3567888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHc-------CCCC-ChHHHHHHHHHHHhcCCHHHH------HHHHHHHHHcCCCCChh
Q 016681          134 IVYAKVKMRNLESALVVYEEMLKR-------GFSA-NSFVYTTFIGAYCEYGKIEEA------NCLMQEMENAGLKPYDE  199 (384)
Q Consensus       134 ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a------~~~~~~~~~~~~~~~~~  199 (384)
                      +...+...|++++|...+++..+.       ...+ ....+..+...+...+....+      ...++.... ..+....
T Consensus       175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  253 (283)
T 3edt_B          175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNT  253 (283)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHH
Confidence            899999999999999999998763       1122 223333333333333332222      222221111 1122345


Q ss_pred             hHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681          200 TFNLLIEGCAKAKRIEESLSYCEQMMSR  227 (384)
Q Consensus       200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~  227 (384)
                      ++..+...|...|++++|...+++..+.
T Consensus       254 ~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          254 TLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7888899999999999999999988754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.39  E-value=4.4e-09  Score=92.45  Aligned_cols=345  Identities=8%  Similarity=-0.025  Sum_probs=220.3

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCC-hhHHHHHHHHHHhc-CCC-CCHHHHHHHHHHHH----ccCCh
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDR-NDLVWRIYQHMLEN-IRY-PNEATIRTLISALC----KGGQL   74 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~----~~~~~   74 (384)
                      |+++.+..+|+.....  .|++..|...+....+.+. .+....+|+..+.. |.. ++...|...+..+.    ..++.
T Consensus        28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~  105 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI  105 (493)
T ss_dssp             TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred             CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence            5788999999999885  4799999999988877763 46677888888775 433 36788888887654    24678


Q ss_pred             HHHHHHHHHHHhCCCCCcHHhHHHHHHHHH-------------hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 016681           75 QTYVDMLDRIHGKRCSPMVIVNTSLILRII-------------QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM  141 (384)
Q Consensus        75 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  141 (384)
                      +.+..+|++........-...|......-.             ..+.+..|..+++.+...-...+...|...+..-...
T Consensus       106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~  185 (493)
T 2uy1_A          106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN  185 (493)
T ss_dssp             HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence            889999999987432111233332222111             1122334444444443211011334555554432221


Q ss_pred             C--C-----hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCch
Q 016681          142 R--N-----LESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRI  214 (384)
Q Consensus       142 ~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  214 (384)
                      +  -     .+.+..+|+++.... +.+...|...+..+.+.|+.++|..++++....  +.+...+.    .|....+.
T Consensus       186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~  258 (493)
T 2uy1_A          186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE  258 (493)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred             CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence            1  1     345677899888763 446788888899999999999999999999887  33332222    22222111


Q ss_pred             HHHHHHHHHHHhCC------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-c
Q 016681          215 EESLSYCEQMMSRK------------LLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAK-E  281 (384)
Q Consensus       215 ~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~  281 (384)
                      ++.   ++.+.+.-            .......|...+....+.++.+.|..+|+.+ .. ...+...|......-.. .
T Consensus       259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~  333 (493)
T 2uy1_A          259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT  333 (493)
T ss_dssp             THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred             hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence            221   22222110            0111245666677777788899999999999 32 22344555433322222 3


Q ss_pred             CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHH
Q 016681          282 GEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLC  361 (384)
Q Consensus       282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  361 (384)
                      ++.+.|..+|+...+.. +-++..+...++.....|+.+.|..+|+++.+     ....|...+..-...|+.+.+..++
T Consensus       334 ~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~  407 (493)
T 2uy1_A          334 GSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELV  407 (493)
T ss_dssp             CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            36999999999988763 23345566677777889999999999999732     5778888888878889999999999


Q ss_pred             HHHHh
Q 016681          362 EEMVS  366 (384)
Q Consensus       362 ~~~~~  366 (384)
                      ++..+
T Consensus       408 ~~~~~  412 (493)
T 2uy1_A          408 DQKMD  412 (493)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88774

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.38  E-value=1.5e-11  Score=100.40  Aligned_cols=96  Identities=13%  Similarity=0.064  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHc------C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC
Q 016681          130 AYSLIVYAKVKMRNLESALVVYEEMLKR------G-FSANSFVYTTFIGAYCEYGKIEEANCLMQEMENA------GLKP  196 (384)
Q Consensus       130 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~  196 (384)
                      ++..+...+...|++++|.+.+++..+.      . .+.....+..+...+...|++++|...+++..+.      +..|
T Consensus        87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  166 (283)
T 3edt_B           87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP  166 (283)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            3444444444444444444444444332      0 0112334444445555555555555555544432      0011


Q ss_pred             -ChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681          197 -YDETFNLLIEGCAKAKRIEESLSYCEQMM  225 (384)
Q Consensus       197 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  225 (384)
                       ...++..+...+...|++++|...+++..
T Consensus       167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  196 (283)
T 3edt_B          167 NVAKTKNNLASCYLKQGKYQDAETLYKEIL  196 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             12334444455555555555555555443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.33  E-value=2.8e-10  Score=93.45  Aligned_cols=165  Identities=12%  Similarity=-0.016  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHhc-CchHHHHHHHHHHHhCCCCC-C----h
Q 016681          165 VYTTFIGAYCEYGKIEEANCLMQEMENAGL---KP--YDETFNLLIEGCAKA-KRIEESLSYCEQMMSRKLLP-S----C  233 (384)
Q Consensus       165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~  233 (384)
                      +|+.+..+|...|++++|+..+++..+...   .+  -..++..+...|... |++++|+..+++..+..... +    .
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~  158 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence            444455555555555555555544433110   00  012444455555553 66666666555554421110 0    2


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh---
Q 016681          234 SAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNE------ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP---  304 (384)
Q Consensus       234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---  304 (384)
                      .++..+...+...|++++|...++...+..+....      ..|..+..++...|++++|...|++..+.  .|+..   
T Consensus       159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~  236 (292)
T 1qqe_A          159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR  236 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence            34555566666666666666666666654322111      13455555666666666666666665543  12211   


Q ss_pred             ---hHHHHHHHHH--hcCChHHHHHHHHHHhh
Q 016681          305 ---AYTSLISSLC--QCGKLEEADKYFKIMKS  331 (384)
Q Consensus       305 ---~~~~l~~~~~--~~g~~~~a~~~~~~~~~  331 (384)
                         .+..++.++.  ..+++++|...|+.+..
T Consensus       237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence               2233344443  33456666666655443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.30  E-value=1.2e-09  Score=88.10  Aligned_cols=246  Identities=9%  Similarity=-0.014  Sum_probs=147.1

Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 016681           66 SALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE  145 (384)
Q Consensus        66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  145 (384)
                      +-..-.|.+..++.-..++   ...........+.+++...|++...         ....|....+..+...+ ..+   
T Consensus        21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---   84 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---   84 (310)
T ss_dssp             HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred             HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence            3344568888777733322   2122223333455777777776642         12334443444443333 222   


Q ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 016681          146 SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL-KPYDETFNLLIEGCAKAKRIEESLSYCEQM  224 (384)
Q Consensus       146 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  224 (384)
                       |...|++..+.+ .++..++..+..++...|++++|++++.+....+- .-+...+...+..+.+.|+.+.|.+.++.|
T Consensus        85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             566676666544 34555556777788888888888888887766542 134566777778888888888888888888


Q ss_pred             HhCCC---CCChhhHHHHHHHH--HhcC--ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016681          225 MSRKL---LPSCSAFNEMIRRL--CECG--NAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK  297 (384)
Q Consensus       225 ~~~~~---~~~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  297 (384)
                      .+...   ..+..+...+..++  ...|  ++.+|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus       163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred             HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            76531   00244555555552  2223  788888888887665  344333344444777888888888888766543


Q ss_pred             -----C----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 016681          298 -----S----ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHS  333 (384)
Q Consensus       298 -----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  333 (384)
                           +    -+-++.++..+|......|+  +|.++++++.+..
T Consensus       241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence                 0    02355566455555555665  7778888887754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.30  E-value=2.6e-09  Score=86.18  Aligned_cols=249  Identities=13%  Similarity=0.087  Sum_probs=165.0

Q ss_pred             HHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcch
Q 016681           30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERI  109 (384)
Q Consensus        30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  109 (384)
                      ++-..-.|++..++.-   ..+............+.+++...|++...         ....|....+..+...+ ..+  
T Consensus        20 ikn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred             HHHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence            4556678888888773   33222222333444456777777876642         11234443444444333 322  


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016681          110 EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGF-SANSFVYTTFIGAYCEYGKIEEANCLMQE  188 (384)
Q Consensus       110 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  188 (384)
                        |+..++++...+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++
T Consensus        85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~  161 (310)
T 3mv2_B           85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN  161 (310)
T ss_dssp             --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence              677888777665 44566667788888899999999999998877654 23667778888999999999999999999


Q ss_pred             HHHcCCCC-----ChhhHHHHHHHHHh--cC--chHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016681          189 MENAGLKP-----YDETFNLLIEGCAK--AK--RIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLA  259 (384)
Q Consensus       189 ~~~~~~~~-----~~~~~~~l~~~~~~--~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  259 (384)
                      |.+.  .|     +..+...+..++..  .|  +..+|..+|+++.+..  |+...-..++.++.+.|++++|+..++.+
T Consensus       162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l  237 (310)
T 3mv2_B          162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL  237 (310)
T ss_dssp             HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9774  45     34566666655332  23  8899999999987653  34333344444888999999999999876


Q ss_pred             HhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh
Q 016681          260 LDKG---------FSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP  304 (384)
Q Consensus       260 ~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  304 (384)
                      .+..         -+-++.+...++......|+  +|.++++++.+..  |+..
T Consensus       238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~--P~hp  287 (310)
T 3mv2_B          238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD--HEHA  287 (310)
T ss_dssp             HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT--CCCH
T ss_pred             HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC--CCCh
Confidence            6531         02366677566655556676  8889999998764  5544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.28  E-value=2.1e-08  Score=81.75  Aligned_cols=218  Identities=11%  Similarity=0.034  Sum_probs=122.2

Q ss_pred             ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH----Hhh---cc
Q 016681           38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGG--QLQTYVDMLDRIHGKRCSPMVIVNTSLILRI----IQE---ER  108 (384)
Q Consensus        38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~  108 (384)
                      ..++|+.+++.++..++. +...|+.--..+...|  +++++++.++.+...+ +.+..+|+.-...+    ...   ++
T Consensus        48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence            335788888877775432 4556777667777777  7788888888777765 55666666655554    334   56


Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC------HH
Q 016681          109 IEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE--SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGK------IE  180 (384)
Q Consensus       109 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~  180 (384)
                      +++++++++++.+...+ +..+|+.-...+.+.+.++  ++++.++++.+..+. |...|+.-.......+.      ++
T Consensus       126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~  203 (306)
T 3dra_A          126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID  203 (306)
T ss_dssp             THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence            67777777777766544 6666666666666666666  666666666665443 55556555555544444      55


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchH-HHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 016681          181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIE-ESLSYCEQMMSRK--LLPSCSAFNEMIRRLCECGNAKQANGMLT  257 (384)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  257 (384)
                      ++++.++.+.... +-|...|+-.-..+.+.|+.. .+..+..++.+.+  ...++..+..+...+.+.|+.++|.++++
T Consensus       204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~  282 (306)
T 3dra_A          204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD  282 (306)
T ss_dssp             HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            5555555555443 334444544444444444322 2333333333221  01234444444444444444444444444


Q ss_pred             HHH
Q 016681          258 LAL  260 (384)
Q Consensus       258 ~~~  260 (384)
                      .+.
T Consensus       283 ~l~  285 (306)
T 3dra_A          283 LLK  285 (306)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.27  E-value=6.5e-10  Score=79.41  Aligned_cols=129  Identities=16%  Similarity=0.115  Sum_probs=63.8

Q ss_pred             hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681           25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII  104 (384)
Q Consensus        25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  104 (384)
                      +|..+...+...|++++|..+++.+.+... .+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            344455555555555555555555554422 234445555555555555555555555554443 333444444555555


Q ss_pred             hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016681          105 QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLK  156 (384)
Q Consensus       105 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  156 (384)
                      ..|++++|.+.++++...... +...+..+...+.+.|++++|...++++.+
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            555555555555555443221 334444444444455555555555444443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.26  E-value=6.3e-10  Score=79.49  Aligned_cols=130  Identities=15%  Similarity=0.210  Sum_probs=85.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 016681          235 AFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLC  314 (384)
Q Consensus       235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  314 (384)
                      .+..+...+...|++++|..+++.+.+... .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            345556666666777777777766665432 255666666666777777777777777766654 334556666677777


Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          315 QCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       315 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      ..|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            777777777777777664332 4566667777777777777777777777653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.26  E-value=6.1e-10  Score=91.38  Aligned_cols=235  Identities=11%  Similarity=0.018  Sum_probs=164.4

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--C-ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 016681          111 EGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM--R-NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQ  187 (384)
Q Consensus       111 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  187 (384)
                      +|.+++.+..+.- +++...| .+    .+.  + ++++|...|++.               ...|...|++++|.+.|+
T Consensus         3 ~a~~~~~~a~k~~-~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~   61 (292)
T 1qqe_A            3 DPVELLKRAEKKG-VPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL   61 (292)
T ss_dssp             CHHHHHHHHHHHS-SCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred             cHHHHHHHHHHHh-CcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence            4666777766652 2222222 22    232  2 488888887776               346778999999999998


Q ss_pred             HHHHc----CCCCC-hhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHhc-CChHHHHHHH
Q 016681          188 EMENA----GLKPY-DETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP-S----CSAFNEMIRRLCEC-GNAKQANGML  256 (384)
Q Consensus       188 ~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~a~~~~  256 (384)
                      +..+.    +-+++ ..+|+.+...|.+.|++++|+..+++..+..... +    ..++..+...|... |++++|...+
T Consensus        62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~  141 (292)
T 1qqe_A           62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY  141 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            87653    32222 4678899999999999999999999886642111 1    35788889999996 9999999999


Q ss_pred             HHHHhcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh------hHHHHHHHHHhcCChHHHHHH
Q 016681          257 TLALDKGFSP-N----EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP------AYTSLISSLCQCGKLEEADKY  325 (384)
Q Consensus       257 ~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~  325 (384)
                      ++..+..... +    ..++..+...+.+.|++++|...|++..+........      .|..+..++...|++++|...
T Consensus       142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  221 (292)
T 1qqe_A          142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART  221 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9987642111 1    3568889999999999999999999998864322221      467778889999999999999


Q ss_pred             HHHHhhCCCCC-C---HhHHHHHHHHHh--ccCCHHHHHHHHHHHHh
Q 016681          326 FKIMKSHSLVP-G---VDIYESLVGIHL--EKGNKAKALHLCEEMVS  366 (384)
Q Consensus       326 ~~~~~~~~~~~-~---~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~  366 (384)
                      |++..+..+.. +   ...+..++.++.  ..+++++|...|+++..
T Consensus       222 ~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            99988743221 1   123445566664  45678888888876643

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.25  E-value=3e-08  Score=80.79  Aligned_cols=219  Identities=8%  Similarity=0.010  Sum_probs=127.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc--chHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---C
Q 016681           72 GQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE--RIEEGMVLLKRMLRKNMIHDTIAYSLIVYAK----VKM---R  142 (384)
Q Consensus        72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---~  142 (384)
                      ...++|+.+++.+...+ |.+..+|+.--..+...+  +++++++.++.+....++ +..+|+.--..+    ...   +
T Consensus        47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~  124 (306)
T 3dra_A           47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF  124 (306)
T ss_dssp             CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence            34467888888877776 666777777777777777  788888888888776544 455555444444    344   5


Q ss_pred             ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc------h
Q 016681          143 NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE--EANCLMQEMENAGLKPYDETFNLLIEGCAKAKR------I  214 (384)
Q Consensus       143 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~  214 (384)
                      ++++++++++.+.+...+ +...|+.-.-++.+.|.++  ++++.++++.+.+ +-|...|+.-...+.+.+.      +
T Consensus       125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence            677777777777766433 6666666666666667666  7777777776655 3444555554444444444      5


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH-HHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 016681          215 EESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQ-ANGMLTLALDKG--FSPNEITYSHLIGGYAKEGEIQEVLKLY  291 (384)
Q Consensus       215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~  291 (384)
                      +++++.++.++...+. |...|+..-..+.+.|+... +..+...+.+.+  -..+...+..+...|.+.|+.++|.+++
T Consensus       203 ~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~  281 (306)
T 3dra_A          203 DEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY  281 (306)
T ss_dssp             HHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            5555555555555444 55555555555555554222 233333333221  0123444444445554445555555555


Q ss_pred             HHHH
Q 016681          292 YEME  295 (384)
Q Consensus       292 ~~~~  295 (384)
                      +.+.
T Consensus       282 ~~l~  285 (306)
T 3dra_A          282 DLLK  285 (306)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.25  E-value=1.7e-09  Score=87.20  Aligned_cols=188  Identities=8%  Similarity=-0.010  Sum_probs=103.9

Q ss_pred             CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCcHHh
Q 016681           21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN---EATIRTLISALCKGGQLQTYVDMLDRIHGKRC--SPMVIV   95 (384)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~   95 (384)
                      .++..+-.....+.+.|++++|...|+.+.+..+. +   ...+..+..++.+.|++++|+..|+++.+...  +.....
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            34555666666677777777777777777665322 2   45666666777777777777777777665431  122445


Q ss_pred             HHHHHHHHHh--------hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH
Q 016681           96 NTSLILRIIQ--------EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYT  167 (384)
Q Consensus        96 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  167 (384)
                      +..+..++..        .|++++|...|+++++..+. +......+..              +..+...    ....+.
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~  152 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY  152 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence            5556666666        67777777777776665322 2222211100              0000000    011134


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-ChhhHHHHHHHHHhc----------CchHHHHHHHHHHHhCC
Q 016681          168 TFIGAYCEYGKIEEANCLMQEMENAGLK-P-YDETFNLLIEGCAKA----------KRIEESLSYCEQMMSRK  228 (384)
Q Consensus       168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~  228 (384)
                      .+...|.+.|++++|+..|+.+.+.... + ....+..+..+|...          |++++|...++++.+..
T Consensus       153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            4556666777777777777776654311 0 123455555555544          66666777776666653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.24  E-value=1.5e-10  Score=106.42  Aligned_cols=150  Identities=10%  Similarity=-0.079  Sum_probs=71.5

Q ss_pred             cchHHHHHHHHHHH--------hcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016681            2 RLFEVAFDVCRYLE--------QRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ   73 (384)
Q Consensus         2 ~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   73 (384)
                      |++++|++.++...        +.. +.+...+..+..++.+.|++++|+..|++..+... .+...|..+..++...|+
T Consensus       405 ~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~  482 (681)
T 2pzi_A          405 SQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLTGD  482 (681)
T ss_dssp             CCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHcCC
Confidence            44455555555554        221 22344444555555555555555555555544322 134444445555555555


Q ss_pred             hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016681           74 LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEE  153 (384)
Q Consensus        74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  153 (384)
                      +++|+..|++..+.+ +.+...+..+..++.+.|++++ ++.|++..+.+.. +...+..+..++.+.|++++|.+.|++
T Consensus       483 ~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~  559 (681)
T 2pzi_A          483 YDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDE  559 (681)
T ss_dssp             HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            555555555554443 3344444455555555555555 5555555444322 344444444555555555555555544


Q ss_pred             HHH
Q 016681          154 MLK  156 (384)
Q Consensus       154 ~~~  156 (384)
                      ..+
T Consensus       560 al~  562 (681)
T 2pzi_A          560 VPP  562 (681)
T ss_dssp             SCT
T ss_pred             hcc
Confidence            443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.24  E-value=2.4e-09  Score=86.35  Aligned_cols=173  Identities=10%  Similarity=0.037  Sum_probs=122.7

Q ss_pred             CcchHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCC-CC-HHHHHHHHHHHHc-----
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLS---LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRY-PN-EATIRTLISALCK-----   70 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~-----   70 (384)
                      .|++++|++.|+.+.+.. +.+   ..++..+..++.+.|++++|+..|+...+..+. |. ...+..+..++..     
T Consensus        28 ~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~  106 (261)
T 3qky_A           28 QGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPY  106 (261)
T ss_dssp             TTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCT
T ss_pred             hCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccc
Confidence            489999999999998874 224   678888999999999999999999999986432 22 4567778888888     


Q ss_pred             ---cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 016681           71 ---GGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESA  147 (384)
Q Consensus        71 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  147 (384)
                         .|++++|+..|+++.... +.+......+.......+..                  ...+..+...+.+.|++++|
T Consensus       107 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~------------------~~~~~~la~~~~~~g~~~~A  167 (261)
T 3qky_A          107 ELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKL------------------ARKQYEAARLYERRELYEAA  167 (261)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHccCHHHH
Confidence               999999999999998765 33333332221111111110                  11245566778888888888


Q ss_pred             HHHHHHHHHcCCCC--ChHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcC
Q 016681          148 LVVYEEMLKRGFSA--NSFVYTTFIGAYCEY----------GKIEEANCLMQEMENAG  193 (384)
Q Consensus       148 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~  193 (384)
                      ...|+.+.+.....  ....+..+..+|...          |++++|...|+.+.+..
T Consensus       168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            88888887753221  234566677777755          78888888888887753

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.24  E-value=8.2e-10  Score=85.66  Aligned_cols=97  Identities=7%  Similarity=-0.009  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHH----------------HHHHHHccCChHHHHHHHHHHHhC
Q 016681           24 ISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRT----------------LISALCKGGQLQTYVDMLDRIHGK   87 (384)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~   87 (384)
                      ..+......+.+.|++++|+..|+...+..+. +...+..                +...+.+.|++++|+..|++..+.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            33444455666777777777777777764221 2333333                344444444444444444444443


Q ss_pred             CCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681           88 RCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus        88 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  122 (384)
                      . |.+...+..+...+...|++++|...|++.++.
T Consensus        84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  117 (208)
T 3urz_A           84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL  117 (208)
T ss_dssp             C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            3 333444444444444444444444444444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.21  E-value=3.3e-10  Score=104.12  Aligned_cols=171  Identities=11%  Similarity=-0.069  Sum_probs=86.2

Q ss_pred             HhcCCHHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 016681          174 CEYGKIEEANCLMQEME--------NAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE  245 (384)
Q Consensus       174 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  245 (384)
                      ...|++++|++.+++..        +.. +.+...+..+...+...|++++|...+++..+.++. +...+..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            44555555555555554        221 223344555555555555555555555555554332 44455555555555


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 016681          246 CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKY  325 (384)
Q Consensus       246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  325 (384)
                      .|++++|...|+++.+..+. +...+..+..++.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|...
T Consensus       480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            55555555555555554322 44455555555555555555 55555555443 23344555555555555555555555


Q ss_pred             HHHHhhCCCCCCHhHHHHHHHHHhc
Q 016681          326 FKIMKSHSLVPGVDIYESLVGIHLE  350 (384)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~l~~~~~~  350 (384)
                      |+++.+.++. +...+..+..++..
T Consensus       557 ~~~al~l~P~-~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          557 LDEVPPTSRH-FTTARLTSAVTLLS  580 (681)
T ss_dssp             HHTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred             HHhhcccCcc-cHHHHHHHHHHHHc
Confidence            5555543322 23444444444444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.20  E-value=1.8e-09  Score=88.25  Aligned_cols=165  Identities=13%  Similarity=0.038  Sum_probs=99.4

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHH-HHH
Q 016681           57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYS-LIV  135 (384)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll  135 (384)
                      +...+..+...+...|++++|...|++..... +.+...+..+...+.+.|++++|...++++....  |+..... ...
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~  192 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence            34455566666666777777777777766654 4556666666677777777777777777665543  2322222 222


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCch
Q 016681          136 YAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLK-PYDETFNLLIEGCAKAKRI  214 (384)
Q Consensus       136 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~  214 (384)
                      ..+...++.+.|...+++..+... .+...+..+...+...|++++|...|+++.+.... .+...+..+...+...|+.
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            234455666666666666666532 25566666677777777777777777776664311 1145566666677777776


Q ss_pred             HHHHHHHHHHH
Q 016681          215 EESLSYCEQMM  225 (384)
Q Consensus       215 ~~a~~~~~~~~  225 (384)
                      ++|...+++..
T Consensus       272 ~~a~~~~r~al  282 (287)
T 3qou_A          272 DALASXYRRQL  282 (287)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            66666665543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.20  E-value=2.8e-09  Score=82.64  Aligned_cols=75  Identities=16%  Similarity=0.094  Sum_probs=37.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 016681          134 IVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAK  210 (384)
Q Consensus       134 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  210 (384)
                      +..++.+.|++++|...|++..+.... +...+..+..++...|++++|...|++..+.. +.+..++..+...|..
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL  134 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            444555555555555555555554222 44455555555555555555555555555543 2233444444444433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.19  E-value=6.1e-09  Score=80.97  Aligned_cols=176  Identities=9%  Similarity=-0.058  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC----ChHHHHHHH
Q 016681            6 VAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGG----QLQTYVDML   81 (384)
Q Consensus         6 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~   81 (384)
                      +|++.|+...+.|   ++.++..+...+...+++++|.+.|++..+.|   +...+..+...|.. +    ++++|.++|
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            4677777777764   67777777777878888888888888877653   56666667777666 5    778888888


Q ss_pred             HHHHhCCCCCcHHhHHHHHHHHHh----hcchHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 016681           82 DRIHGKRCSPMVIVNTSLILRIIQ----EERIEEGMVLLKRMLRKNMI-HDTIAYSLIVYAKVK----MRNLESALVVYE  152 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~  152 (384)
                      ++....+   +...+..+...|..    .+++++|++.|++..+.|.. .+...+..|...|..    .+++++|..+|+
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            8776644   45566666666665    66777888888777766531 015566667667766    667777777777


Q ss_pred             HHHHcCCCCChHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 016681          153 EMLKRGFSANSFVYTTFIGAYCEY-G-----KIEEANCLMQEMENAG  193 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~  193 (384)
                      +..+.  ..+...+..+...|... |     ++++|...|+...+.|
T Consensus       154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            77665  12344555666666543 2     6777777777776665

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.18  E-value=9.2e-10  Score=82.92  Aligned_cols=163  Identities=12%  Similarity=0.058  Sum_probs=103.1

Q ss_pred             hhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH-
Q 016681           24 ISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR-  102 (384)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-  102 (384)
                      ..+......+.+.|++++|...|+...+..+ .+...+..+...+...|++++|+..++++.... + +...+..+... 
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~   83 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLE   83 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHH
Confidence            3455566677778888888888877766533 256677777777888888888888887776554 2 44333322211 


Q ss_pred             HHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHH
Q 016681          103 IIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA-NSFVYTTFIGAYCEYGKIEE  181 (384)
Q Consensus       103 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~  181 (384)
                      +...+....|.+.+++..+..+. +...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++
T Consensus        84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  162 (176)
T 2r5s_A           84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA  162 (176)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred             HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence            11222333456677776665433 56666677777777777777777777776654332 24466667777777777777


Q ss_pred             HHHHHHHHH
Q 016681          182 ANCLMQEME  190 (384)
Q Consensus       182 a~~~~~~~~  190 (384)
                      |...|++..
T Consensus       163 A~~~y~~al  171 (176)
T 2r5s_A          163 IASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.17  E-value=3.2e-10  Score=82.86  Aligned_cols=143  Identities=9%  Similarity=-0.012  Sum_probs=97.5

Q ss_pred             HHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 016681          207 GCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQE  286 (384)
Q Consensus       207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  286 (384)
                      .+...|++++|+..+.......+. +...+..+...|.+.|++++|...|++..+..+. +...|..+..+|.+.|++++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHH
Confidence            344556777777777776654322 3445566777778888888888888887776443 67778888888888888888


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH-HHHHhhCCCCCCHhHHHHHHHHHhccCC
Q 016681          287 VLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKY-FKIMKSHSLVPGVDIYESLVGIHLEKGN  353 (384)
Q Consensus       287 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~  353 (384)
                      |...|++..+.. +-+..++..+...+.+.|++++|.+. +++..+..+. ++.+|......+...|+
T Consensus        84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence            888888877764 33566777777788888887665554 5777765443 56666666666666654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.17  E-value=3e-08  Score=87.15  Aligned_cols=330  Identities=11%  Similarity=-0.033  Sum_probs=203.9

Q ss_pred             hHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC-hHHHHHHHH
Q 016681            4 FEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ-LQTYVDMLD   82 (384)
Q Consensus         4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~   82 (384)
                      ++.|..+|+.+...  -|.              |+++.+..+|++.+..  .|+...|...+....+.++ .+....+|+
T Consensus        11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe   72 (493)
T 2uy1_A           11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE   72 (493)
T ss_dssp             -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred             hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            66677777777654  122              7899999999999884  4799999999888777763 456777888


Q ss_pred             HHHhC-CC-CCcHHhHHHHHHHHH----hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------------hcCC
Q 016681           83 RIHGK-RC-SPMVIVNTSLILRII----QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV-------------KMRN  143 (384)
Q Consensus        83 ~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------------~~~~  143 (384)
                      ..... |. +.+...|...+..+.    ..++.+.+.++|++.+......-...|......-.             ..+.
T Consensus        73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~  152 (493)
T 2uy1_A           73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPI  152 (493)
T ss_dssp             HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHH
Confidence            76653 32 456788888887654    35788999999999987422211122222211110             1122


Q ss_pred             hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHH
Q 016681          144 LESALVVYEEMLKRGFSANSFVYTTFIGAYCEYG--K-----IEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEE  216 (384)
Q Consensus       144 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  216 (384)
                      +..|..+++.+...-...+...|...+..-...+  -     .+.+..+|+++.... +.+...|...+..+.+.|+.+.
T Consensus       153 y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~  231 (493)
T 2uy1_A          153 FQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEK  231 (493)
T ss_dssp             HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            3334444444432200013345655555433221  1     345677888887754 4556778888888889999999


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---------C---CCCHHHHHHHHHHHHhcCCH
Q 016681          217 SLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKG---------F---SPNEITYSHLIGGYAKEGEI  284 (384)
Q Consensus       217 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~~~~~~  284 (384)
                      |..++++.... + .+...+.    .|....+.++.   ++.+.+.-         .   ......|...+....+.++.
T Consensus       232 ar~i~erAi~~-P-~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~  302 (493)
T 2uy1_A          232 AKKVVERGIEM-S-DGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL  302 (493)
T ss_dssp             HHHHHHHHHHH-C-CSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHhC-C-CcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence            99999999987 2 2332222    22222222222   22222210         0   01124577777777778889


Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHH
Q 016681          285 QEVLKLYYEMEYKSISPTLPAYTSLISSLCQC-GKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEE  363 (384)
Q Consensus       285 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  363 (384)
                      +.|..+|++. ... ..+...|......-... ++.+.|..+|+...+.-+. ++..|...+....+.|+.+.|..+|++
T Consensus       303 ~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er  379 (493)
T 2uy1_A          303 ELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKR  379 (493)
T ss_dssp             HHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999 321 22334444333222233 3699999999999885322 456677788888889999999999988


Q ss_pred             H
Q 016681          364 M  364 (384)
Q Consensus       364 ~  364 (384)
                      +
T Consensus       380 ~  380 (493)
T 2uy1_A          380 L  380 (493)
T ss_dssp             S
T ss_pred             H
Confidence            6

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.17  E-value=8.6e-10  Score=80.57  Aligned_cols=140  Identities=11%  Similarity=-0.099  Sum_probs=60.0

Q ss_pred             hhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHH
Q 016681           34 TKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGM  113 (384)
Q Consensus        34 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  113 (384)
                      ...|++++|+..++....... .+...+..+...|.+.|++++|++.|++..+.+ +.+..+|..+..++...|++++|+
T Consensus         8 ~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~   85 (150)
T 4ga2_A            8 RSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAV   85 (150)
T ss_dssp             CCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHH
Confidence            334444444444444332210 012223334444445555555555555544443 334444555555555555555555


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCChHHHHHHHHHHHhcC
Q 016681          114 VLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVV-YEEMLKRGFSANSFVYTTFIGAYCEYG  177 (384)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (384)
                      ..|++..+..+. +..++..+...+.+.|++++|.+. +++..+..+. ++.+|......+...|
T Consensus        86 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           86 ECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence            555554443322 344444444445555544433332 2444433211 3344444444443333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.16  E-value=2.9e-09  Score=87.06  Aligned_cols=168  Identities=11%  Similarity=0.000  Sum_probs=127.1

Q ss_pred             CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH-H
Q 016681           90 SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYT-T  168 (384)
Q Consensus        90 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~  168 (384)
                      +.+...+..+...+...|++++|...|++....... +...+..+...+...|++++|...++++....  |+..... .
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence            455667777888888889999999999988877544 67778888888888999999998888876653  3433322 2


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcC
Q 016681          169 FIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP-SCSAFNEMIRRLCECG  247 (384)
Q Consensus       169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  247 (384)
                      ....+...++.++|...+++..... +.+...+..+...+...|++++|...+.++.+..+.. +...+..++..+...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            2334667777888888888887765 4566778888888888899999999998888875442 2567888888888888


Q ss_pred             ChHHHHHHHHHHHh
Q 016681          248 NAKQANGMLTLALD  261 (384)
Q Consensus       248 ~~~~a~~~~~~~~~  261 (384)
                      +.++|...+++...
T Consensus       270 ~~~~a~~~~r~al~  283 (287)
T 3qou_A          270 TGDALASXYRRQLY  283 (287)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHH
Confidence            88888888877653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.15  E-value=1.2e-08  Score=80.10  Aligned_cols=187  Identities=9%  Similarity=0.018  Sum_probs=120.8

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCC-CC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH---HhH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRY-PN-EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV---IVN   96 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~   96 (384)
                      ++..+..+...+.+.|++++|+..|+.+.+..+. |. ...+..+..++.+.|++++|+..|+++.+.. |.+.   ..+
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence            4455666677788899999999999998876432 11 3567778888889999999999999988764 2222   234


Q ss_pred             HHHHHHHHh------------------hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 016681           97 TSLILRIIQ------------------EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG  158 (384)
Q Consensus        97 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  158 (384)
                      ..+..++..                  .|++++|...|+++++..+. +...+......          ..+...+.   
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---  147 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---  147 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH---
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH---
Confidence            444444443                  45677777777777765322 22222211100          00000000   


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCC
Q 016681          159 FSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYD----ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLL  230 (384)
Q Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  230 (384)
                           .....+...|.+.|++++|...|+.+.+..  |+.    ..+..+..++.+.|++++|.+.++.+...++.
T Consensus       148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence                 111345677888899999999998887753  332    45777888888899999999999888776543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.15  E-value=2e-09  Score=97.17  Aligned_cols=154  Identities=8%  Similarity=-0.056  Sum_probs=120.2

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML   81 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   81 (384)
                      |++++|++.|++..+.. +.+...|..+...+.+.|++++|.+.|++..+... .+...+..+...+...|++++|.+.+
T Consensus         3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            78999999999998764 44688899999999999999999999999988643 36888999999999999999999999


Q ss_pred             HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcC
Q 016681           82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM---RNLESALVVYEEMLKRG  158 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~  158 (384)
                      ++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+...   |+.++|.+.+++..+.+
T Consensus        81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            9998876 667889999999999999999999999999887543 677888899999999   99999999999998874


Q ss_pred             C
Q 016681          159 F  159 (384)
Q Consensus       159 ~  159 (384)
                      .
T Consensus       159 p  159 (568)
T 2vsy_A          159 V  159 (568)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.14  E-value=3e-09  Score=95.99  Aligned_cols=154  Identities=10%  Similarity=-0.045  Sum_probs=119.6

Q ss_pred             cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHH
Q 016681           36 SDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVL  115 (384)
Q Consensus        36 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  115 (384)
                      .|++++|.+.|++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4788999999999887533 367889999999999999999999999999876 66788999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 016681          116 LKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY---GKIEEANCLMQEMENA  192 (384)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~  192 (384)
                      +++..+.... +...+..+..++.+.|++++|.+.+++..+... .+...+..+..++...   |++++|.+.+++..+.
T Consensus        80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            9999887543 678899999999999999999999999988743 3677888899999999   9999999999999876


Q ss_pred             C
Q 016681          193 G  193 (384)
Q Consensus       193 ~  193 (384)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.14  E-value=8.6e-10  Score=83.10  Aligned_cols=158  Identities=11%  Similarity=-0.014  Sum_probs=76.4

Q ss_pred             HHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcC
Q 016681          204 LIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGG-YAKEG  282 (384)
Q Consensus       204 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~  282 (384)
                      ....+...|++++|...+++..+..+. +...+..+...+...|++++|...++.+....+  +...+...... +...+
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~   88 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQA   88 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhc
Confidence            334444455555555555554443322 344455555555555555555555555443321  22222211111 11111


Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHhHHHHHHHHHhccCCHHHHHHHH
Q 016681          283 EIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP-GVDIYESLVGIHLEKGNKAKALHLC  361 (384)
Q Consensus       283 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~  361 (384)
                      ...+|...+++..+.. +.+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...|
T Consensus        89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            2223455555555443 2234555556666666666666666666666544332 2345556666666666666666666


Q ss_pred             HHHH
Q 016681          362 EEMV  365 (384)
Q Consensus       362 ~~~~  365 (384)
                      ++.+
T Consensus       168 ~~al  171 (176)
T 2r5s_A          168 RRQL  171 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.13  E-value=1.2e-08  Score=79.25  Aligned_cols=176  Identities=10%  Similarity=-0.023  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc----chHHHHHHH
Q 016681           41 LVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE----RIEEGMVLL  116 (384)
Q Consensus        41 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~  116 (384)
                      +|.+.|+...+.   -+...+..+...+...+++++|..+|++..+.+   ++..+..+...|.. +    ++++|.+.|
T Consensus         4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            455666666654   256677777777777777777777777777654   45556666666666 5    677777777


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHh----cCCHHHHHHHHH
Q 016681          117 KRMLRKNMIHDTIAYSLIVYAKVK----MRNLESALVVYEEMLKRGFS-ANSFVYTTFIGAYCE----YGKIEEANCLMQ  187 (384)
Q Consensus       117 ~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~  187 (384)
                      ++..+.|   +...+..+...|..    .+++++|.++|++..+.+.. .+...+..|...|..    .+++++|...|+
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            7776665   55566666666665    66777777777777665431 014566666666666    666777777777


Q ss_pred             HHHHcCCCCChhhHHHHHHHHHhc-C-----chHHHHHHHHHHHhCC
Q 016681          188 EMENAGLKPYDETFNLLIEGCAKA-K-----RIEESLSYCEQMMSRK  228 (384)
Q Consensus       188 ~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~  228 (384)
                      +..+.+  .+...+..+...|... |     ++++|...|+...+.|
T Consensus       154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            766641  2233455555555432 2     5667777666666554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.12  E-value=8.7e-09  Score=85.14  Aligned_cols=198  Identities=11%  Similarity=-0.028  Sum_probs=106.8

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML   81 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   81 (384)
                      |++++|.+++++..+... .+         .+...++++.|...|...               ...+...|++++|...|
T Consensus         5 ~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~   59 (307)
T 2ifu_A            5 QKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY   59 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence            567788888887765421 11         011145666666666554               34555677777777777


Q ss_pred             HHHHhCCC---CC--cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCChHHHHHHH
Q 016681           82 DRIHGKRC---SP--MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNM---IH--DTIAYSLIVYAKVKMRNLESALVVY  151 (384)
Q Consensus        82 ~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~  151 (384)
                      .+......   .+  -..+|+.+...|...|++++|+..|++......   .+  ...++..+...|.. |++++|...|
T Consensus        60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~  138 (307)
T 2ifu_A           60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY  138 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            76543210   11  134566666667777777777777776554210   01  12345555556655 6777777666


Q ss_pred             HHHHHcCCCC-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCchHHHHHHH
Q 016681          152 EEMLKRGFSA-----NSFVYTTFIGAYCEYGKIEEANCLMQEMENA----GLKPY-DETFNLLIEGCAKAKRIEESLSYC  221 (384)
Q Consensus       152 ~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~  221 (384)
                      ++..+.....     ...++..+...|.+.|++++|+..|++..+.    +..++ ...+..+...+...|++++|...|
T Consensus       139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~  218 (307)
T 2ifu_A          139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV  218 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6655431000     1344555666666666666666666665442    11111 113344444445556666666666


Q ss_pred             HHHH
Q 016681          222 EQMM  225 (384)
Q Consensus       222 ~~~~  225 (384)
                      ++..
T Consensus       219 ~~al  222 (307)
T 2ifu_A          219 RESY  222 (307)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            6655

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.11  E-value=2.6e-08  Score=78.18  Aligned_cols=188  Identities=8%  Similarity=-0.044  Sum_probs=116.0

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCCh--hhHH
Q 016681          162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL-KP-YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSC--SAFN  237 (384)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~  237 (384)
                      +...+-.+...+.+.|++++|+..|+++.+... .| ....+..+..++.+.|++++|+..|+++.+..+....  ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            344556677788889999999999998887531 11 1246777788888899999999999998876544221  2344


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh-h-----------
Q 016681          238 EMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP-A-----------  305 (384)
Q Consensus       238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~-----------  305 (384)
                      .+..++...+..     .+            ..|..+...+...|+.++|...|+++.+..  |+.. +           
T Consensus        83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~  143 (225)
T 2yhc_A           83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLK  143 (225)
T ss_dssp             HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHH
Confidence            444444432100     00            001111111222334444444444444331  2111 1           


Q ss_pred             ------HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681          306 ------YTSLISSLCQCGKLEEADKYFKIMKSHSLVPG--VDIYESLVGIHLEKGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       306 ------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  368 (384)
                            ...+...+.+.|++++|...|+++.+..+...  ...+..+..++.+.|++++|.+.++.+...+
T Consensus       144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                  12456678889999999999999988543311  2568888999999999999999999988764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.10  E-value=6.1e-09  Score=86.09  Aligned_cols=159  Identities=10%  Similarity=-0.050  Sum_probs=78.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--hhhHHHHH
Q 016681          136 YAKVKMRNLESALVVYEEMLKR----GFSA-NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL---KPY--DETFNLLI  205 (384)
Q Consensus       136 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~  205 (384)
                      ..|...|++++|...|.+..+.    +..+ -..+|+.+..+|...|++++|+..|++..+.-.   .+.  ..++..+.
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  123 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG  123 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555667777777776665443    1000 123556666666666677777666666543210   111  23444555


Q ss_pred             HHHHhcCchHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCC-HHHHHHHH
Q 016681          206 EGCAKAKRIEESLSYCEQMMSRKLLP-----SCSAFNEMIRRLCECGNAKQANGMLTLALDKG----FSPN-EITYSHLI  275 (384)
Q Consensus       206 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~  275 (384)
                      ..|.. |++++|+..+++..+.....     ...++..+...+...|++++|...+++..+..    ..+. ...+..+.
T Consensus       124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g  202 (307)
T 2ifu_A          124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV  202 (307)
T ss_dssp             HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence            55555 66666666666554421110     02344555555555555555555555554321    1000 11333344


Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q 016681          276 GGYAKEGEIQEVLKLYYEME  295 (384)
Q Consensus       276 ~~~~~~~~~~~a~~~~~~~~  295 (384)
                      .++...|++++|...|++..
T Consensus       203 ~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          203 LVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHh
Confidence            44444555555555555554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.08  E-value=2.8e-07  Score=75.93  Aligned_cols=176  Identities=9%  Similarity=-0.007  Sum_probs=123.0

Q ss_pred             HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhh-c-ch
Q 016681           33 VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGG-QLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQE-E-RI  109 (384)
Q Consensus        33 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~  109 (384)
                      ..+....++|+++++.++..+.. +..+|+.--..+...| .+++++.+++.+...+ +.+..+|+.....+.+. + ++
T Consensus        64 ~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~  141 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP  141 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred             HHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence            34444556889999888886543 5667777777777777 5889999999988877 77788888887777776 6 78


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC---
Q 016681          110 EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE--------SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGK---  178 (384)
Q Consensus       110 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  178 (384)
                      ++++++++++.+.... |..+|+.-...+.+.+.++        ++++.++++.+..+. |...|+.....+.+.++   
T Consensus       142 ~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          142 VSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             HHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence            8888888888877654 7777776665555555555        777778877776444 67777777777666665   


Q ss_pred             ----HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 016681          179 ----IEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKR  213 (384)
Q Consensus       179 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  213 (384)
                          ++++++.+++..... +-|...|+-+-..+.+.|.
T Consensus       220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence                567777777766654 3445556555444444443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.03  E-value=5.4e-07  Score=74.27  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=17.0

Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHh
Q 016681          301 PTLPAYTSLISSLCQCGKLEEADKYFKIMK  330 (384)
Q Consensus       301 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  330 (384)
                      ++...+..++..|...|+.++|.++++.+.
T Consensus       300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~  329 (349)
T 3q7a_A          300 PVPLALEYLADSFIEQNRVDDAAKVFEKLS  329 (349)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            344455555555666666666666666554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.98  E-value=6.1e-08  Score=75.29  Aligned_cols=129  Identities=9%  Similarity=-0.046  Sum_probs=95.4

Q ss_pred             hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681           25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII  104 (384)
Q Consensus        25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  104 (384)
                      .+..+...+...|++++|...|+..    +.|+...+..+...+...|++++|...|++..... +.+...+..+..++.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            3455666777888888888888766    34577788888888888888888888888877765 556777888888888


Q ss_pred             hhcchHHHHHHHHHHHHcCCCC---------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 016681          105 QEERIEEGMVLLKRMLRKNMIH---------------DTIAYSLIVYAKVKMRNLESALVVYEEMLKRG  158 (384)
Q Consensus       105 ~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  158 (384)
                      ..|++++|.+.|++..+.....               ....+..+..++.+.|++++|...|+...+..
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            8888888888888887753221               12566677777778888888888887777653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.97  E-value=4.3e-07  Score=74.40  Aligned_cols=162  Identities=11%  Similarity=0.090  Sum_probs=91.8

Q ss_pred             HHHHHhhcchHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHHHHHH
Q 016681          100 ILRIIQEERIEEGMVLLKRMLRKNM-IHDT----IAYSLIVYAKVKMRNLESALVVYEEMLKRGFS-AN----SFVYTTF  169 (384)
Q Consensus       100 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l  169 (384)
                      +..+...|++++|.+++++...... .|+.    ..+..+...+...+++++|...+++..+.... ++    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            4556666777777777766665321 1121    12223445555566777777777776653221 12    2246666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH----c-CCCCC-hhhHHHHHHHHHhcCchHHHHHHHHHHHhC----CCCCC-hhhHHH
Q 016681          170 IGAYCEYGKIEEANCLMQEMEN----A-GLKPY-DETFNLLIEGCAKAKRIEESLSYCEQMMSR----KLLPS-CSAFNE  238 (384)
Q Consensus       170 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~  238 (384)
                      ..+|...|++++|...++++.+    . +..+. ..++..+...|.+.|++++|...+++..+.    +..+. ..++..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            7777777777777777766653    1 11111 235666666777777777777777665432    11111 456666


Q ss_pred             HHHHHHhcCC-hHHHHHHHHHHHh
Q 016681          239 MIRRLCECGN-AKQANGMLTLALD  261 (384)
Q Consensus       239 l~~~~~~~~~-~~~a~~~~~~~~~  261 (384)
                      +..++...|+ +++|...+++...
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHH
Confidence            7777777774 4777777666553

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.94  E-value=1.1e-08  Score=83.25  Aligned_cols=99  Identities=11%  Similarity=-0.058  Sum_probs=74.2

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      +...+..+...+.+.|++++|...|+...+... .+...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            456677777778888888888888888777533 266777777777888888888888888877765 556777777777


Q ss_pred             HHHhhcchHHHHHHHHHHHHc
Q 016681          102 RIIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~  122 (384)
                      ++...|++++|...|++..+.
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            788888888888888777654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.93  E-value=1.5e-08  Score=82.40  Aligned_cols=195  Identities=12%  Similarity=-0.001  Sum_probs=112.8

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681          162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR  241 (384)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  241 (384)
                      +...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+..+. +...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            34556666677777777777777777776654 335566777777777777777777777777766543 5667777777


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 016681          242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEE  321 (384)
Q Consensus       242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  321 (384)
                      ++...|++++|...++...+..+. +...+...+....+   ..++. -+........+.+......+ ..+ ..|++++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~  153 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERER  153 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHH
Confidence            778888888888877776653211 10011111111111   11111 11222223333444443333 222 2678888


Q ss_pred             HHHHHHHHhhCCCCCCH-hHHHHHHHHHhcc-CCHHHHHHHHHHHHhC
Q 016681          322 ADKYFKIMKSHSLVPGV-DIYESLVGIHLEK-GNKAKALHLCEEMVSE  367 (384)
Q Consensus       322 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~  367 (384)
                      |.+.++...+..  |+. .....+...+.+. +.+++|.++|.++.+.
T Consensus       154 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          154 ELEECQRNHEGH--EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHTTTSGGGTTT--SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            888888777653  333 3333444444444 6678888888887764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.93  E-value=2.1e-07  Score=72.18  Aligned_cols=125  Identities=10%  Similarity=0.023  Sum_probs=70.1

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 016681           61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK  140 (384)
Q Consensus        61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  140 (384)
                      +..+...+...|++++|...|++..    .|+...+..+...+...|++++|.+.+++..+.... +...+..+..++..
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence            3444555556666666666666552    345556666666666666666666666666554322 45555556666666


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681          141 MRNLESALVVYEEMLKRGFSANS----------------FVYTTFIGAYCEYGKIEEANCLMQEMEN  191 (384)
Q Consensus       141 ~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~  191 (384)
                      .|++++|.+.|++..+.... +.                ..+..+..++...|++++|...|+...+
T Consensus        84 ~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            66666666666666554221 11                3444455555555555555555555544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.92  E-value=7.1e-07  Score=73.09  Aligned_cols=163  Identities=10%  Similarity=-0.060  Sum_probs=118.4

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCC-CCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHH
Q 016681          134 IVYAKVKMRNLESALVVYEEMLKRGF-SANS----FVYTTFIGAYCEYGKIEEANCLMQEMENAGLK-PY----DETFNL  203 (384)
Q Consensus       134 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~  203 (384)
                      .+..+...|++++|..++++..+... .|+.    ..+..+...+...+++++|+..+++..+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            45677888999999999999877532 2221    13335667777788999999999998874322 22    225888


Q ss_pred             HHHHHHhcCchHHHHHHHHHHHh----C-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC-HHHHH
Q 016681          204 LIEGCAKAKRIEESLSYCEQMMS----R-KLLP-SCSAFNEMIRRLCECGNAKQANGMLTLALDK----GFSPN-EITYS  272 (384)
Q Consensus       204 l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~  272 (384)
                      +...|...|++++|...++++.+    . +..+ ...++..+...|.+.|++++|...++...+.    +..+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            88899999999999999988874    1 1111 2347788889999999999999998877642    22222 56788


Q ss_pred             HHHHHHHhcCC-HHHHHHHHHHHHh
Q 016681          273 HLIGGYAKEGE-IQEVLKLYYEMEY  296 (384)
Q Consensus       273 ~l~~~~~~~~~-~~~a~~~~~~~~~  296 (384)
                      .+..++.+.|+ +++|.+.+++...
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            88889999994 6899988887754

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.92  E-value=6.3e-08  Score=68.16  Aligned_cols=97  Identities=11%  Similarity=-0.025  Sum_probs=54.6

Q ss_pred             hhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 016681           24 ISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRI  103 (384)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  103 (384)
                      ..+......+.+.|++++|++.|++.++..+ .+...|..+..++.+.|++++|+..|++..+.+ +.+...|..+..++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence            3445555555666666666666666555432 245555555555556666666666666555544 44455555555555


Q ss_pred             HhhcchHHHHHHHHHHHHc
Q 016681          104 IQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus       104 ~~~~~~~~a~~~~~~~~~~  122 (384)
                      ...|++++|.+.|++.++.
T Consensus        92 ~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH
Confidence            5556666666655555554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.92  E-value=3.8e-09  Score=88.38  Aligned_cols=130  Identities=11%  Similarity=0.031  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc---------------HHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681           58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM---------------VIVNTSLILRIIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  122 (384)
                      ...+..+...+.+.|++++|+..|++..... +.+               ..+|..+..++.+.|++++|+..+++.++.
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3445555555555666666666666555443 222               466666777777777777777777777665


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 016681          123 NMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEA-NCLMQEME  190 (384)
Q Consensus       123 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~  190 (384)
                      ... +...+..+..++...|++++|...|++..+.... +...+..+..++.+.|+.++| ...+..|.
T Consensus       226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433 5666666777777777777777777777665322 555666666777777777666 33444443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.91  E-value=1e-07  Score=70.61  Aligned_cols=96  Identities=7%  Similarity=-0.041  Sum_probs=48.1

Q ss_pred             hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681           25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII  104 (384)
Q Consensus        25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  104 (384)
                      .+..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++..... +.+...+..+...+.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            344444555555555555555555554322 234445555555555555555555555554443 334444444555555


Q ss_pred             hhcchHHHHHHHHHHHHc
Q 016681          105 QEERIEEGMVLLKRMLRK  122 (384)
Q Consensus       105 ~~~~~~~a~~~~~~~~~~  122 (384)
                      ..|++++|.+.+++....
T Consensus        93 ~~~~~~~A~~~~~~a~~~  110 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKV  110 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHh
Confidence            555555555555554443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.90  E-value=1.3e-07  Score=70.07  Aligned_cols=126  Identities=11%  Similarity=0.035  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV  139 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  139 (384)
                      .+..+...+...|++++|...|++..... +.+..++..+...+...|++++|.+.+++..+.... +...+..+..++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence            34444555555566666666666555443 334555555555555555666665555555554321 4445555555555


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHH
Q 016681          140 KMRNLESALVVYEEMLKRGFSANSFVYT--TFIGAYCEYGKIEEANCLMQE  188 (384)
Q Consensus       140 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~  188 (384)
                      ..|++++|...+++..+.... +...+.  .....+...|++++|.+.+..
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  142 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH  142 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            555555555555555544221 222221  222224444555555554443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.88  E-value=1.1e-07  Score=66.83  Aligned_cols=95  Identities=14%  Similarity=0.084  Sum_probs=47.1

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 016681           61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK  140 (384)
Q Consensus        61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  140 (384)
                      +......+.+.|++++|++.|++..+.+ +.+...|..+..++.+.|++++|++.+++.++.+.. +...|..+..++..
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~   93 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence            4444445555555555555555554443 344455555555555555555555555555444322 34444445555555


Q ss_pred             cCChHHHHHHHHHHHHc
Q 016681          141 MRNLESALVVYEEMLKR  157 (384)
Q Consensus       141 ~~~~~~a~~~~~~~~~~  157 (384)
                      .|++++|.+.|++..+.
T Consensus        94 ~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           94 MREWSKAQRAYEDALQV  110 (126)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            55555555555554443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.87  E-value=8.7e-07  Score=72.57  Aligned_cols=167  Identities=11%  Similarity=0.068  Sum_probs=90.5

Q ss_pred             HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--h
Q 016681           94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHD-----TIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS---AN--S  163 (384)
Q Consensus        94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~  163 (384)
                      ..+...+..+...|++++|.+.+.+..+.....+     ...+..+...+...|++++|...+++..+....   +.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            3444455556666666666666665555422211     012233444555666677777666666543111   11  3


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-----hhhHHHHHHHHHhcCchHHHHHHHHHHHhCC----CCC-C
Q 016681          164 FVYTTFIGAYCEYGKIEEANCLMQEMENA-GLKPY-----DETFNLLIEGCAKAKRIEESLSYCEQMMSRK----LLP-S  232 (384)
Q Consensus       164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~  232 (384)
                      .+++.+...|...|++++|...+++..+. ...|+     ..++..+...|...|++++|...+++..+..    ... -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            35666666667777777777766665521 00111     1356666666667777777777666654321    111 1


Q ss_pred             hhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 016681          233 CSAFNEMIRRLCECGNAKQA-NGMLTLAL  260 (384)
Q Consensus       233 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~  260 (384)
                      ..++..+..++...|++++| ...++...
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            44566666777777777777 55555544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.87  E-value=1.5e-07  Score=65.84  Aligned_cols=98  Identities=15%  Similarity=0.082  Sum_probs=55.1

Q ss_pred             hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 016681           23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR  102 (384)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  102 (384)
                      ...|..+...+...|++++|.+.++.+.+... .+..++..+...+...|++++|...++++.... +.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            44555555666666666666666666655422 244555555555666666666666666555443 3345555555555


Q ss_pred             HHhhcchHHHHHHHHHHHHc
Q 016681          103 IIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus       103 ~~~~~~~~~a~~~~~~~~~~  122 (384)
                      +...|++++|...++++.+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHh
Confidence            55555555555555555544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.87  E-value=8.5e-08  Score=72.09  Aligned_cols=117  Identities=7%  Similarity=-0.019  Sum_probs=51.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCh--HHHH
Q 016681           72 GQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA-KVKMRNL--ESAL  148 (384)
Q Consensus        72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~--~~a~  148 (384)
                      |++++|...+++..... +.+...+..+...+...|++++|...|++..+.... +...+..+..+ +...|++  ++|.
T Consensus        24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~  101 (177)
T 2e2e_A           24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTR  101 (177)
T ss_dssp             ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred             cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHH
Confidence            34444444444444332 333444444444444444444444444444443221 33344444444 3444444  5555


Q ss_pred             HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681          149 VVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMEN  191 (384)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  191 (384)
                      ..+++..+.... +...+..+..++...|++++|...++++.+
T Consensus       102 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A          102 AMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            555554443211 334444444555555555555555555444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.86  E-value=5.9e-08  Score=74.70  Aligned_cols=155  Identities=8%  Similarity=-0.081  Sum_probs=67.7

Q ss_pred             hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC----CC-CCcHHhHHHHHHHHHhhcch
Q 016681           35 KSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK----RC-SPMVIVNTSLILRIIQEERI  109 (384)
Q Consensus        35 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~  109 (384)
                      ..|++++|.+.++.+.. .......++..+...+...|++++|...+++....    +. +....++..+...+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            34455555553333322 11123344445555555555555555555544331    10 11233444555555555555


Q ss_pred             HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChHHHHHHHHHHHhcCC
Q 016681          110 EEGMVLLKRMLRK----NMIH--DTIAYSLIVYAKVKMRNLESALVVYEEMLKR----GFS-ANSFVYTTFIGAYCEYGK  178 (384)
Q Consensus       110 ~~a~~~~~~~~~~----~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~  178 (384)
                      ++|.+.+++....    +..|  ....+..+...+...|++++|...+++..+.    +.. .-..++..+..++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            5555555554432    1010  1223444455555555555555555554432    100 001223445555555666


Q ss_pred             HHHHHHHHHHHH
Q 016681          179 IEEANCLMQEME  190 (384)
Q Consensus       179 ~~~a~~~~~~~~  190 (384)
                      +++|.+.+++..
T Consensus       163 ~~~A~~~~~~al  174 (203)
T 3gw4_A          163 LLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666655555443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.85  E-value=2.5e-07  Score=64.69  Aligned_cols=97  Identities=13%  Similarity=0.113  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016681           59 ATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAK  138 (384)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  138 (384)
                      ..+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...++++.+... .+..++..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence            344445555555555555555555554443 33444555555555555555555555555544322 1344444445555


Q ss_pred             HhcCChHHHHHHHHHHHHc
Q 016681          139 VKMRNLESALVVYEEMLKR  157 (384)
Q Consensus       139 ~~~~~~~~a~~~~~~~~~~  157 (384)
                      ...|++++|...++++.+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh
Confidence            5555555555555554443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.85  E-value=1.2e-07  Score=67.27  Aligned_cols=99  Identities=6%  Similarity=-0.034  Sum_probs=53.6

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      +...|..+...+.+.|++++|...|+...+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            445555555556666666666666665555322 244555555555555555555555555555443 334455555555


Q ss_pred             HHHhhcchHHHHHHHHHHHHc
Q 016681          102 RIIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~  122 (384)
                      .+...|++++|.+.+++..+.
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHh
Confidence            555555555555555555543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.85  E-value=5e-08  Score=70.88  Aligned_cols=96  Identities=9%  Similarity=-0.007  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV  139 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  139 (384)
                      .+..+...+.+.|++++|...|++....+ |.+...|..+..++...|++++|+..|++.....+. +...|..+..++.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~  115 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence            34444444555555555555555555443 344455555555555555555555555555544322 3444444555555


Q ss_pred             hcCChHHHHHHHHHHHHc
Q 016681          140 KMRNLESALVVYEEMLKR  157 (384)
Q Consensus       140 ~~~~~~~a~~~~~~~~~~  157 (384)
                      +.|++++|...|++..+.
T Consensus       116 ~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            555555555555555443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.84  E-value=1.9e-07  Score=66.23  Aligned_cols=98  Identities=8%  Similarity=0.024  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016681           58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA  137 (384)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  137 (384)
                      ...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.+++..+.... +...+..+..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~   93 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence            4455555556666666666666666655543 344555555555666666666666666665554322 44555555555


Q ss_pred             HHhcCChHHHHHHHHHHHHc
Q 016681          138 KVKMRNLESALVVYEEMLKR  157 (384)
Q Consensus       138 ~~~~~~~~~a~~~~~~~~~~  157 (384)
                      +.+.|++++|.+.|++..+.
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHh
Confidence            55556666666555555544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.84  E-value=1.2e-07  Score=66.96  Aligned_cols=118  Identities=15%  Similarity=0.063  Sum_probs=61.0

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      +...+..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence            344455555555566666666666665555422 244555555555555555555555555555443 334445555555


Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR  142 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  142 (384)
                      .+...|++++|.+.+++..+.... +...+..+..++.+.|
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence            555555555555555555544322 3444444444444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.84  E-value=6.4e-08  Score=72.79  Aligned_cols=123  Identities=9%  Similarity=0.053  Sum_probs=91.1

Q ss_pred             HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH-HHhhcch--
Q 016681           33 VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR-IIQEERI--  109 (384)
Q Consensus        33 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--  109 (384)
                      +...|++++|...++...+... .+...+..+...+...|++++|...|++..... +.+...+..+... +...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence            3456778888888888777643 367778888888888888888888888887765 5567777777777 6778887  


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 016681          110 EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG  158 (384)
Q Consensus       110 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  158 (384)
                      ++|...+++..+.... +...+..+...+...|++++|...++++.+..
T Consensus        98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            8888888888876533 56777778888888888888888888887763

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.82  E-value=1.4e-07  Score=75.24  Aligned_cols=187  Identities=10%  Similarity=-0.074  Sum_probs=105.1

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHH-------HHHHhhcCChhHHHHHHHHHHh------------cCCC-------
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTL-------IHVVTKSDRNDLVWRIYQHMLE------------NIRY-------   55 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~------------~~~~-------   55 (384)
                      +++++|.+.|..+.+.. +-....|+.+       ...+...++..++...+..-..            .|..       
T Consensus        20 ~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v   98 (282)
T 4f3v_A           20 MSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV   98 (282)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred             CCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence            46677777777777664 3366777666       4555555555555554444433            1100       


Q ss_pred             -CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC--HHHHH
Q 016681           56 -PNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHD--TIAYS  132 (384)
Q Consensus        56 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~  132 (384)
                       --......+...+...|++++|.++|+.+...+ +-+. ....+...+.+.+++++|+..|+...... .|.  ...+.
T Consensus        99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~  175 (282)
T 4f3v_A           99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV  175 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred             CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence             002233445566666777777777777665543 2223 44455556667777777777776443321 110  22455


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016681          133 LIVYAKVKMRNLESALVVYEEMLKRGFSAN--SFVYTTFIGAYCEYGKIEEANCLMQEMENA  192 (384)
Q Consensus       133 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  192 (384)
                      .+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...
T Consensus       176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            566666677777777777776654322132  234445556666677777777777776664

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.82  E-value=4.1e-07  Score=74.55  Aligned_cols=170  Identities=12%  Similarity=0.039  Sum_probs=125.5

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc-----HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC---CCC-
Q 016681           57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM-----VIVNTSLILRIIQEERIEEGMVLLKRMLRKNM---IHD-  127 (384)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-  127 (384)
                      ....+...+..+...|++++|.+.+.+........+     ...+..+...+...|++++|+..+++......   .+. 
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  153 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence            345666778888999999999999988776542211     12344566777888999999999999875321   112 


Q ss_pred             -HHHHHHHHHHHHhcCChHHHHHHHHHHHH---c-CCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC
Q 016681          128 -TIAYSLIVYAKVKMRNLESALVVYEEMLK---R-GFSA--NSFVYTTFIGAYCEYGKIEEANCLMQEMENAG----LKP  196 (384)
Q Consensus       128 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~  196 (384)
                       ..+++.+...|...|++++|...+++..+   . +..+  ...++..+...|...|++++|...+++..+..    ...
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~  233 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence             45788899999999999999999998873   2 1111  12578889999999999999999998876432    111


Q ss_pred             -ChhhHHHHHHHHHhcCchHHH-HHHHHHHHh
Q 016681          197 -YDETFNLLIEGCAKAKRIEES-LSYCEQMMS  226 (384)
Q Consensus       197 -~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~  226 (384)
                       -..+|..+...|.+.|++++| ...+++...
T Consensus       234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence             146788888999999999999 777776654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.82  E-value=2.1e-07  Score=65.69  Aligned_cols=115  Identities=10%  Similarity=-0.002  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV  139 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  139 (384)
                      .+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++....... +...+..+...+.
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~   91 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence            44444455555555555555555554433 334444555555555555555555555555443221 3444444444555


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 016681          140 KMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYG  177 (384)
Q Consensus       140 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (384)
                      ..|++++|...+++..+... .+...+..+..++.+.|
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred             HhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHh
Confidence            55555555555555444321 13333444444444333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.82  E-value=8.1e-08  Score=69.77  Aligned_cols=108  Identities=11%  Similarity=0.051  Sum_probs=63.9

Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS  160 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  160 (384)
                      |+++.... +.+...+..+...+...|++++|...|++....... +...|..+..++...|++++|...|++.......
T Consensus        10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A           10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            34444333 334455555666666666666666666666655432 5556666666666666666666666666655322


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681          161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMEN  191 (384)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  191 (384)
                       +...+..+..++...|++++|...|+...+
T Consensus        88 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           88 -EPRFPFHAAECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             -CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -CchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             455566666666666666666666666654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.81  E-value=1.2e-07  Score=72.94  Aligned_cols=156  Identities=9%  Similarity=-0.046  Sum_probs=89.6

Q ss_pred             HccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCC
Q 016681           69 CKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK----NMI-HDTIAYSLIVYAKVKMRN  143 (384)
Q Consensus        69 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~  143 (384)
                      ...|++++|.+.++.+... ......++..+...+...|++++|...+++....    +.. ....++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            3567788888755544432 1345667777777788888888888888776652    111 133456666667777777


Q ss_pred             hHHHHHHHHHHHHc----CCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--hhhHHHHHHHHHhcC
Q 016681          144 LESALVVYEEMLKR----GFSA--NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL---KPY--DETFNLLIEGCAKAK  212 (384)
Q Consensus       144 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~  212 (384)
                      +++|.+.+++..+.    +..+  ....+..+...+...|++++|...+++..+...   .+.  ..++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            77777777766543    1111  233456666677777777777777766543210   111  122345555556666


Q ss_pred             chHHHHHHHHHHH
Q 016681          213 RIEESLSYCEQMM  225 (384)
Q Consensus       213 ~~~~a~~~~~~~~  225 (384)
                      ++++|...+++..
T Consensus       162 ~~~~A~~~~~~al  174 (203)
T 3gw4_A          162 NLLEAQQHWLRAR  174 (203)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            6666666555543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.80  E-value=5.8e-08  Score=70.50  Aligned_cols=100  Identities=7%  Similarity=-0.109  Sum_probs=90.9

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      +...+..+...+.+.|++++|...|+...+..+ .+...|..+..++...|++++|+..|++..+.. |.++..|..+..
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~  112 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence            556788888999999999999999999998754 378899999999999999999999999999887 677889999999


Q ss_pred             HHHhhcchHHHHHHHHHHHHcC
Q 016681          102 RIIQEERIEEGMVLLKRMLRKN  123 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~  123 (384)
                      ++...|++++|.+.|++..+..
T Consensus       113 ~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999865

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.78  E-value=1.6e-07  Score=74.79  Aligned_cols=126  Identities=7%  Similarity=-0.073  Sum_probs=55.9

Q ss_pred             HHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhc
Q 016681           99 LILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSAN--SFVYTTFIGAYCEY  176 (384)
Q Consensus        99 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~  176 (384)
                      +...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  ...+..+..++...
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L  184 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL  184 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence            3444555555555555555554432  222133333344555555555555554332211 000  12344444555555


Q ss_pred             CCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681          177 GKIEEANCLMQEMENAGLKPY--DETFNLLIEGCAKAKRIEESLSYCEQMMSR  227 (384)
Q Consensus       177 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  227 (384)
                      |++++|+..|++.......|.  .........++.+.|+.++|..+|+++...
T Consensus       185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            555555555555443221122  122333334444555555555555555544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.78  E-value=2.5e-07  Score=77.32  Aligned_cols=128  Identities=11%  Similarity=-0.107  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 016681          235 AFNEMIRRLCECGNAKQANGMLTLALDKGFSPN--------------EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS  300 (384)
Q Consensus       235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  300 (384)
                      .+..+...+.+.|++++|...|++..+......              ...|..+..+|.+.|++++|...+++..+.. +
T Consensus       149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p  227 (336)
T 1p5q_A          149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S  227 (336)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence            344444444455555555555554444322211              3556666666666666666666666666553 3


Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHH-HHHHHHH
Q 016681          301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKA-LHLCEEM  364 (384)
Q Consensus       301 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~  364 (384)
                      .+...|..+..++...|++++|...|+++.+..+. +...+..+..++...|+.++| ...++.|
T Consensus       228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666666666666666664433 455566666666666666665 3344444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.78  E-value=8.6e-08  Score=69.63  Aligned_cols=99  Identities=10%  Similarity=-0.081  Sum_probs=61.8

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      +...+..+...+.+.|++++|...|+....... .+...|..+..++...|++++|+..|++....+ +.+...+..+..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence            445555566666666666666666666665432 255566666666666666666666666666554 445566666666


Q ss_pred             HHHhhcchHHHHHHHHHHHHc
Q 016681          102 RIIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~  122 (384)
                      ++...|++++|.+.|++..+.
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            666666666666666666553

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.77  E-value=4e-05  Score=62.94  Aligned_cols=183  Identities=9%  Similarity=-0.043  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-HHHHHHHH
Q 016681          110 EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR--NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGK-IEEANCLM  186 (384)
Q Consensus       110 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~  186 (384)
                      ++++.+++.+....++ +..+|+.-...+.+.+  .++++..+++.+.+.... |...|+.-..++...|. ++++++.+
T Consensus        91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            3444444444443322 3344443333333333  244444444444443222 33444443333444444 34444444


Q ss_pred             HHHHHcCCCCChhhHHHHHHHHHhc--------------CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc------
Q 016681          187 QEMENAGLKPYDETFNLLIEGCAKA--------------KRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC------  246 (384)
Q Consensus       187 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------  246 (384)
                      ..+.+.. +-|...|+.....+.+.              +.++++++.+.......+. |...|+-+-..+.+.      
T Consensus       169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~  246 (331)
T 3dss_A          169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL  246 (331)
T ss_dssp             HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence            4444433 22333333333222222              2345555555555554433 444444333333332      


Q ss_pred             -----CChHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhc
Q 016681          247 -----GNAKQANGMLTLALDKGFSPNEITYSHLIG---GYAKEGEIQEVLKLYYEMEYK  297 (384)
Q Consensus       247 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~  297 (384)
                           +.++++.+.++++.+..+. +...+..++.   .....+..+++...+.++.+.
T Consensus       247 ~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          247 SVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence                 2355666666666654322 2222211111   111345666777777777665

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.74  E-value=3.1e-08  Score=76.06  Aligned_cols=55  Identities=9%  Similarity=-0.077  Sum_probs=24.2

Q ss_pred             HHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681           32 VVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK   87 (384)
Q Consensus        32 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   87 (384)
                      .....|+++++.+.|+.-..... .....+..+...+...|++++|...|++....
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~   67 (198)
T 2fbn_A           13 GRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDF   67 (198)
T ss_dssp             ---------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            33344455555554443222111 12334555566666677777777777766654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.73  E-value=2.8e-08  Score=76.33  Aligned_cols=125  Identities=11%  Similarity=-0.039  Sum_probs=79.2

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN---------------EATIRTLISALCKGGQLQTYVDMLDRIHG   86 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   86 (384)
                      ....+..+...+.+.|++++|...|++..+......               ...+..+..++...|++++|+..+++...
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  116 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK  116 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            455677888899999999999999999987532211               15556666666666667777666666665


Q ss_pred             CCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 016681           87 KRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESAL  148 (384)
Q Consensus        87 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  148 (384)
                      .. +.+...+..+..++...|++++|.+.|++..+.... +...+..+..++...++.+++.
T Consensus       117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred             hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence            54 445566666666666666666666666666654322 4445555555555444444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.73  E-value=2.7e-07  Score=66.44  Aligned_cols=97  Identities=9%  Similarity=0.015  Sum_probs=56.9

Q ss_pred             HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 016681           93 VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGA  172 (384)
Q Consensus        93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  172 (384)
                      ...+..+...+.+.|++++|...|++....... +...|..+..++.+.|++++|...|+...+.... +...+..+..+
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~   95 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence            344445555566666666666666666554432 5555555666666666666666666666555322 44555556666


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 016681          173 YCEYGKIEEANCLMQEMEN  191 (384)
Q Consensus       173 ~~~~~~~~~a~~~~~~~~~  191 (384)
                      +...|++++|...|+...+
T Consensus        96 ~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            6666666666666666554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.72  E-value=5.2e-07  Score=63.38  Aligned_cols=98  Identities=10%  Similarity=-0.028  Sum_probs=60.2

Q ss_pred             hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 016681           23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR  102 (384)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  102 (384)
                      ...|......+.+.|++++|+..|+...+... .+...|..+..++.+.|++++|+..+++..+.+ +.+...|..+..+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            34455556666666666666666666665432 245566666666666666666666666666554 4455566666666


Q ss_pred             HHhhcchHHHHHHHHHHHHc
Q 016681          103 IIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus       103 ~~~~~~~~~a~~~~~~~~~~  122 (384)
                      +...|++++|.+.|++..+.
T Consensus        82 ~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHh
Confidence            66666666666666665554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.69  E-value=1.4e-06  Score=60.07  Aligned_cols=98  Identities=11%  Similarity=-0.020  Sum_probs=52.0

Q ss_pred             hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 016681           23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR  102 (384)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  102 (384)
                      +..+..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++..... +.+...+..+...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            34445555555555666666666655555422 244455555555555555555555555555443 3344455555555


Q ss_pred             HHhhcchHHHHHHHHHHHHc
Q 016681          103 IIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus       103 ~~~~~~~~~a~~~~~~~~~~  122 (384)
                      +...|++++|.+.+++..+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhhHHHHHHHHHHHHHc
Confidence            55555555555555555543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.68  E-value=1.5e-06  Score=59.82  Aligned_cols=97  Identities=11%  Similarity=-0.010  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016681           59 ATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAK  138 (384)
Q Consensus        59 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  138 (384)
                      ..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.... +...+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence            344555555556666666666666655543 344555555555566666666666666665554322 444555555555


Q ss_pred             HhcCChHHHHHHHHHHHHc
Q 016681          139 VKMRNLESALVVYEEMLKR  157 (384)
Q Consensus       139 ~~~~~~~~a~~~~~~~~~~  157 (384)
                      ...|++++|.+.++...+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHc
Confidence            5556666666555555544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.67  E-value=9e-07  Score=62.14  Aligned_cols=96  Identities=10%  Similarity=0.028  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV  139 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  139 (384)
                      .+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.... +...+..+..++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence            44455555556666666666666655544 445555666666666666666666666665554322 4455555555566


Q ss_pred             hcCChHHHHHHHHHHHHc
Q 016681          140 KMRNLESALVVYEEMLKR  157 (384)
Q Consensus       140 ~~~~~~~a~~~~~~~~~~  157 (384)
                      ..|++++|...|++..+.
T Consensus        84 ~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           84 AVKEYASALETLDAARTK  101 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHh
Confidence            666666666666555543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.67  E-value=8.9e-05  Score=60.86  Aligned_cols=196  Identities=12%  Similarity=0.035  Sum_probs=130.4

Q ss_pred             hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc-hHHHHHH
Q 016681          144 LESALVVYEEMLKRGFSANSFVYTTFIGAYCEYG--KIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKR-IEESLSY  220 (384)
Q Consensus       144 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~  220 (384)
                      +++++.+++.+.....+ +..+|+.-..++...+  .+++++.+++.+.+.. +-|..+|+.-.-.+...|. ++++++.
T Consensus        90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            56777788887776444 7777777777777777  4788888888888766 4566777766666667776 5788888


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhc--------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----
Q 016681          221 CEQMMSRKLLPSCSAFNEMIRRLCEC--------------GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE-----  281 (384)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----  281 (384)
                      ++.+.+.++. +..+|+.....+...              +.++++.+.+.......+. |...|+.+-..+.+.     
T Consensus       168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~  245 (331)
T 3dss_A          168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE  245 (331)
T ss_dssp             HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred             HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence            8888887765 777777666665554              3467788888888776544 777777655555544     


Q ss_pred             ------CCHHHHHHHHHHHHhcCCCCChhhHHHHHH-----HHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 016681          282 ------GEIQEVLKLYYEMEYKSISPTLPAYTSLIS-----SLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGI  347 (384)
Q Consensus       282 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  347 (384)
                            +.++++++.++++.+..  |+. .|..+..     .....|..+++...+.++++.++. ...-|.-+...
T Consensus       246 ~~~~~~~~l~~el~~~~elle~~--pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r~~~y~d~~~~  318 (331)
T 3dss_A          246 LSVEKSTVLQSELESCKELQELE--PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSK  318 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-GHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHhhC--ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-hhhHHHHHHHH
Confidence                  35678888888888764  443 3332221     222456777888888888875432 33445444433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.64  E-value=5.3e-07  Score=61.58  Aligned_cols=100  Identities=7%  Similarity=-0.114  Sum_probs=66.6

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--cHHhHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSP--MVIVNTSL   99 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l   99 (384)
                      +...|..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++..+.. +.  +...+..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l   82 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK   82 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence            455566666777777777777777777766532 255666666677777777777777777766654 44  56666666


Q ss_pred             HHHHHhh-cchHHHHHHHHHHHHcC
Q 016681          100 ILRIIQE-ERIEEGMVLLKRMLRKN  123 (384)
Q Consensus       100 ~~~~~~~-~~~~~a~~~~~~~~~~~  123 (384)
                      ...+... |++++|.+.+++.....
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence            6677777 77777777777666554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.64  E-value=4e-07  Score=65.60  Aligned_cols=99  Identities=8%  Similarity=-0.143  Sum_probs=63.2

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      +...+..+...+.+.|++++|...|+......+ .+...|..+..++...|++++|+..|++....+ +.+...+..+..
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   94 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence            344455556666667777777777776666533 255666666666666777777777777666654 455566666666


Q ss_pred             HHHhhcchHHHHHHHHHHHHc
Q 016681          102 RIIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~  122 (384)
                      ++...|++++|.+.|++..+.
T Consensus        95 ~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            666677777777766666554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.61  E-value=1.6e-06  Score=60.99  Aligned_cols=55  Identities=11%  Similarity=0.067  Sum_probs=21.9

Q ss_pred             HHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHH
Q 016681           64 LISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRM  119 (384)
Q Consensus        64 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  119 (384)
                      +...+.+.|++++|++.|++..+.. |.+...|..+..+|...|++++|++.+++.
T Consensus        14 lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A           14 LGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            3333344444444444444433332 233333444444444444444444444433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.60  E-value=1.5e-06  Score=61.90  Aligned_cols=99  Identities=15%  Similarity=0.015  Sum_probs=73.2

Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 016681          232 SCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLIS  311 (384)
Q Consensus       232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  311 (384)
                      +...+..+...+...|++++|...|+......+. +...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence            5667777777788888888888888877776433 56777777777778888888888888777664 345667777777


Q ss_pred             HHHhcCChHHHHHHHHHHhhC
Q 016681          312 SLCQCGKLEEADKYFKIMKSH  332 (384)
Q Consensus       312 ~~~~~g~~~~a~~~~~~~~~~  332 (384)
                      ++...|++++|...|++..+.
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHH
Confidence            777888888888888777653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.59  E-value=1.7e-06  Score=63.94  Aligned_cols=100  Identities=8%  Similarity=-0.008  Sum_probs=68.5

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      +...|..+...+.+.|++++|+..|+..++... .+...|..+..++...|++++|+..|++..+.. +.+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            455666677777777777777777777776533 256667777777777777777777777776665 455666777777


Q ss_pred             HHHhhcchHHHHHHHHHHHHcC
Q 016681          102 RIIQEERIEEGMVLLKRMLRKN  123 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~  123 (384)
                      ++...|++++|.+.|++..+..
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhC
Confidence            7777777777777777766543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.59  E-value=3.7e-06  Score=59.83  Aligned_cols=24  Identities=4%  Similarity=-0.093  Sum_probs=8.9

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHH
Q 016681           26 FNTLIHVVTKSDRNDLVWRIYQHM   49 (384)
Q Consensus        26 ~~~l~~~~~~~~~~~~a~~~~~~~   49 (384)
                      |..+...+...|++++|...|+..
T Consensus        12 ~~~~g~~~~~~~~~~~A~~~~~~a   35 (137)
T 3q49_B           12 LKEQGNRLFVGRKYPEAAACYGRA   35 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHH
Confidence            333333333333333333333333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=3.3e-06  Score=60.91  Aligned_cols=98  Identities=11%  Similarity=-0.018  Sum_probs=54.7

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN----EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNT   97 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (384)
                      +...+..+...+...|++++|.+.|+...+.  .|+    ...+..+...+...|++++|...+++..... +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            4455555556666666666666666665553  233    3455555555555666666666665555443 33455555


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHHc
Q 016681           98 SLILRIIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus        98 ~l~~~~~~~~~~~~a~~~~~~~~~~  122 (384)
                      .+..++...|++++|.+.|++....
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            5555555556666666555555544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.58  E-value=2.4e-06  Score=63.18  Aligned_cols=98  Identities=11%  Similarity=0.039  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016681           58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA  137 (384)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  137 (384)
                      ...+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|+..|++.++.... +...|..+..+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~   88 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            4456666667777777777777777776655 456667777777777777777777777777765433 56666667777


Q ss_pred             HHhcCChHHHHHHHHHHHHc
Q 016681          138 KVKMRNLESALVVYEEMLKR  157 (384)
Q Consensus       138 ~~~~~~~~~a~~~~~~~~~~  157 (384)
                      +...|++++|...|++..+.
T Consensus        89 ~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHh
Confidence            77777777777777776654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.55  E-value=1.9e-06  Score=58.78  Aligned_cols=97  Identities=12%  Similarity=-0.008  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CCHhHHHHHHHHH
Q 016681          270 TYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLV-PGVDIYESLVGIH  348 (384)
Q Consensus       270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~  348 (384)
                      .+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... .+...+..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            34444444455555555555555544432 223344444555555555555555555555543211 0244455555555


Q ss_pred             hcc-CCHHHHHHHHHHHHhC
Q 016681          349 LEK-GNKAKALHLCEEMVSE  367 (384)
Q Consensus       349 ~~~-g~~~~a~~~~~~~~~~  367 (384)
                      ... |++++|.+.+++..+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           87 RYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             TTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHhCCHHHHHHHHHHHhhc
Confidence            555 5555555555555543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.55  E-value=1.4e-06  Score=61.30  Aligned_cols=53  Identities=9%  Similarity=0.039  Sum_probs=20.2

Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHH
Q 016681           66 SALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRM  119 (384)
Q Consensus        66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  119 (384)
                      ..+...|++++|...|++..... +.+...+..+...+...|++++|...+++.
T Consensus        12 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   64 (131)
T 1elr_A           12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            33333344444444443333322 223333333333344444444444444433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.54  E-value=1.1e-05  Score=69.95  Aligned_cols=197  Identities=13%  Similarity=0.005  Sum_probs=101.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC
Q 016681          135 VYAKVKMRNLESALVVYEEMLKRGFSANS----------------FVYTTFIGAYCEYGKIEEANCLMQEMENAG-LKPY  197 (384)
Q Consensus       135 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~  197 (384)
                      .+.+.+.|++++|.+.|..+.+.......                ..+..+...|...|++++|.+.+..+...- ..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            34566778888888888887765322110                135566777777777777777776665421 1111


Q ss_pred             hh----hHHHHHHHHHhcCchHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--C--
Q 016681          198 DE----TFNLLIEGCAKAKRIEESLSYCEQMMSR----KLLP-SCSAFNEMIRRLCECGNAKQANGMLTLALDKG--F--  264 (384)
Q Consensus       198 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~--  264 (384)
                      ..    ..+.+-..+...|+++.+..++......    +..+ -..++..+...+...|++++|..+++.+...-  .  
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            11    1111222223345666666666655431    1111 13345556666666666666666666554321  1  


Q ss_pred             CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681          265 SP-NEITYSHLIGGYAKEGEIQEVLKLYYEMEYK--SISPT----LPAYTSLISSLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       265 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  331 (384)
                      .+ ....+..++..|...|++++|..++++....  .+..+    ...+..+...+...|++++|...|.+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            11 1234555556666666666666666655432  11111    12334444445555666666665555443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.54  E-value=1.2e-07  Score=82.88  Aligned_cols=127  Identities=13%  Similarity=0.058  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc---------------HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM---------------VIVNTSLILRIIQEERIEEGMVLLKRMLRKNM  124 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  124 (384)
                      .+..+...+.+.|++++|+..|++..+.. +.+               ...|..+..++.+.|++++|+..+++.++...
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  348 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS  348 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            44444555555555555555555544432 111               46667777777777777777777777777643


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH-HHHHH
Q 016681          125 IHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANC-LMQEM  189 (384)
Q Consensus       125 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~  189 (384)
                      . +...|..+..++...|++++|...|++..+.... +...+..+..++.+.++.+++.+ .+..|
T Consensus       349 ~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          349 A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             c-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 5667777777777777777777777777765322 45566677777777777766653 34443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.54  E-value=1.7e-06  Score=60.21  Aligned_cols=96  Identities=10%  Similarity=-0.006  Sum_probs=70.9

Q ss_pred             hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681           25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII  104 (384)
Q Consensus        25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  104 (384)
                      .+..+...+.+.|++++|+..|+..++... .+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            355566677778888888888888777643 267777777777888888888888888877765 556777777777888


Q ss_pred             hhcchHHHHHHHHHHHHc
Q 016681          105 QEERIEEGMVLLKRMLRK  122 (384)
Q Consensus       105 ~~~~~~~a~~~~~~~~~~  122 (384)
                      ..|++++|+..+++.++.
T Consensus        97 ~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            888888888888877654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=6.6e-06  Score=59.29  Aligned_cols=99  Identities=13%  Similarity=0.084  Sum_probs=57.8

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc---HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHH
Q 016681           57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM---VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSL  133 (384)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  133 (384)
                      +...+..+...+...|++++|...|++..+.. +.+   ...+..+...+...|++++|.+.+++..+.... +...+..
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~  104 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR  104 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence            45556666666666666666666666666543 222   455555566666666666666666665554322 4455555


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHc
Q 016681          134 IVYAKVKMRNLESALVVYEEMLKR  157 (384)
Q Consensus       134 ll~~~~~~~~~~~a~~~~~~~~~~  157 (384)
                      +..++...|++++|...|++..+.
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHc
Confidence            555566666666666666655554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.53  E-value=3.1e-06  Score=59.46  Aligned_cols=97  Identities=10%  Similarity=0.085  Sum_probs=63.1

Q ss_pred             HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----hHHHH
Q 016681           94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGF--SAN----SFVYT  167 (384)
Q Consensus        94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~  167 (384)
                      ..+..+...+.+.|++++|++.|++.++..+. +...|..+..++.+.|++++|.+.+++..+...  .++    ..+|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            45556677777777777777777777765433 566677777777777777777777777665321  111    12455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q 016681          168 TFIGAYCEYGKIEEANCLMQEMEN  191 (384)
Q Consensus       168 ~l~~~~~~~~~~~~a~~~~~~~~~  191 (384)
                      .+..++...|++++|++.|++...
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            566666677777777777766655

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.52  E-value=1.2e-06  Score=60.91  Aligned_cols=93  Identities=14%  Similarity=-0.022  Sum_probs=53.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhcc
Q 016681          272 SHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEK  351 (384)
Q Consensus       272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  351 (384)
                      ..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+..+. +...+..+..++...
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence            334445555666666666666665543 234455555556666666666666666666554433 455555666666666


Q ss_pred             CCHHHHHHHHHHHHh
Q 016681          352 GNKAKALHLCEEMVS  366 (384)
Q Consensus       352 g~~~~a~~~~~~~~~  366 (384)
                      |++++|...+++.++
T Consensus        99 g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           99 HNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHH
Confidence            666666666666554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.50  E-value=1.4e-06  Score=61.27  Aligned_cols=111  Identities=10%  Similarity=0.057  Sum_probs=87.7

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc-------HH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM-------VI   94 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~   94 (384)
                      ....|..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++..... +.+       ..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~   80 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAK   80 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHH
Confidence            356778888999999999999999999988743 467888899999999999999999999987653 222       66


Q ss_pred             hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016681           95 VNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVY  136 (384)
Q Consensus        95 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  136 (384)
                      ++..+...+...|++++|.+.|++..+..  |+......+..
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~  120 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ  120 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence            77788888888888888888888887754  35544444433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.47  E-value=2.5e-05  Score=67.67  Aligned_cols=190  Identities=13%  Similarity=0.010  Sum_probs=133.4

Q ss_pred             cchHHHHHHHHHHHhcCCCCc----------------hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCC-CCHH----H
Q 016681            2 RLFEVAFDVCRYLEQRGFSLS----------------LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRY-PNEA----T   60 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~----~   60 (384)
                      |++++|++.|..+.+......                ..++..+...|.+.|++++|.+.+..+.+.-.. ++..    +
T Consensus        18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   97 (434)
T 4b4t_Q           18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL   97 (434)
T ss_dssp             TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            789999999999987642211                124778899999999999999999887764211 2221    2


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHh----CCCC-CcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC--C--CC-CHHH
Q 016681           61 IRTLISALCKGGQLQTYVDMLDRIHG----KRCS-PMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN--M--IH-DTIA  130 (384)
Q Consensus        61 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~--~~-~~~~  130 (384)
                      .+.+...+...|+.+.|..+++....    .+.. .-..++..+...+...|++++|..++.++...-  .  .+ ...+
T Consensus        98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~  177 (434)
T 4b4t_Q           98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDV  177 (434)
T ss_dssp             HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHH
Confidence            23333444456889999998887653    2212 235677888999999999999999999876531  1  11 2456


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681          131 YSLIVYAKVKMRNLESALVVYEEMLKR----GFSAN--SFVYTTFIGAYCEYGKIEEANCLMQEMEN  191 (384)
Q Consensus       131 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  191 (384)
                      +..++..|...|++++|..++++....    +.++.  ...+..+...+...+++++|...|.+..+
T Consensus       178 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          178 HLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            788888999999999999999887643    11111  24456666777888999999888877654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.45  E-value=5.3e-07  Score=62.43  Aligned_cols=85  Identities=12%  Similarity=-0.026  Sum_probs=45.4

Q ss_pred             cchHHHHHHHHHHHhcC--CCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRG--FSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVD   79 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   79 (384)
                      |++++|+..|+...+.+  -+.+..+|..+..++...|++++|+..|++..+..+. +...+..+..++...|++++|..
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence            55566666666665543  1223455555556666666666666666666554322 35555555555666666666666


Q ss_pred             HHHHHHhC
Q 016681           80 MLDRIHGK   87 (384)
Q Consensus        80 ~~~~~~~~   87 (384)
                      .+++....
T Consensus        83 ~~~~al~~   90 (117)
T 3k9i_A           83 LLLKIIAE   90 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66555443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.43  E-value=4.4e-06  Score=72.98  Aligned_cols=122  Identities=10%  Similarity=-0.109  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 016681          235 AFNEMIRRLCECGNAKQANGMLTLALDKGFSPN--------------EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS  300 (384)
Q Consensus       235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  300 (384)
                      .+..+...+.+.|++++|...|+++.+......              ...|..+..+|.+.|++++|+..+++..+.. +
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p  348 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S  348 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence            445555556666666666666666555322211              4566666667777777777777777766654 3


Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHH
Q 016681          301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKAL  358 (384)
Q Consensus       301 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  358 (384)
                      .+...|..+..+|...|++++|...|+++.+..+. +...+..+..++.+.|+.+++.
T Consensus       349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666667777777777777777777665433 4455666666666666666554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.42  E-value=3.5e-07  Score=80.22  Aligned_cols=124  Identities=11%  Similarity=-0.022  Sum_probs=94.4

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681           26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ  105 (384)
Q Consensus        26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  105 (384)
                      +..+...+.+.|++++|.+.|++..+... .+...+..+..++.+.|++++|++.+++..+.. +.+...+..+..++..
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA   86 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            44445567788999999999999888643 257888889999999999999999999988876 6678888889999999


Q ss_pred             hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 016681          106 EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA--KVKMRNLESALVVYE  152 (384)
Q Consensus       106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~  152 (384)
                      .|++++|++.|++..+.... +...+..+..+  +.+.|++++|.+.++
T Consensus        87 ~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           87 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999998876533 34455555545  778889999998887

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.40  E-value=1.8e-06  Score=75.76  Aligned_cols=114  Identities=6%  Similarity=-0.033  Sum_probs=93.7

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      .|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+... .+...+..+..++...|++++|.+.
T Consensus        19 ~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA~~~   96 (477)
T 1wao_1           19 AKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAALRD   96 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            489999999999998874 44789999999999999999999999999998643 3678899999999999999999999


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHH--HHhhcchHHHHHHHH
Q 016681           81 LDRIHGKRCSPMVIVNTSLILR--IIQEERIEEGMVLLK  117 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~  117 (384)
                      |++..+.. +.+...+..+..+  +.+.|++++|++.++
T Consensus        97 ~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           97 YETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99998765 4455566666666  888999999999988

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.38  E-value=1.9e-05  Score=55.41  Aligned_cols=93  Identities=12%  Similarity=0.024  Sum_probs=52.3

Q ss_pred             HHHHHHhhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc---HHhHHHHHH
Q 016681           28 TLIHVVTKSDRNDLVWRIYQHMLENIRYPNE---ATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM---VIVNTSLIL  101 (384)
Q Consensus        28 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~  101 (384)
                      .+...+...|++++|...|+.+.+.... +.   ..+..+...+...|++++|...|+++.... +.+   ...+..+..
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~   84 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence            3445555666666666666666654321 12   345555556666666666666666665543 222   444555555


Q ss_pred             HHHhhcchHHHHHHHHHHHHc
Q 016681          102 RIIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~  122 (384)
                      ++...|++++|...|+++...
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            666666666666666666554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.38  E-value=2.6e-05  Score=54.62  Aligned_cols=91  Identities=8%  Similarity=-0.034  Sum_probs=41.1

Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCCcH---HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHh
Q 016681           66 SALCKGGQLQTYVDMLDRIHGKRCSPMV---IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHD--TIAYSLIVYAKVK  140 (384)
Q Consensus        66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~  140 (384)
                      ..+...|++++|...|+++.+.. +.+.   ..+..+..++...|++++|...|+++.+......  ...+..+..++..
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~   88 (129)
T 2xev_A           10 FDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG   88 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence            34444555555555555554432 2222   3444444455555555555555555444322100  3334444444444


Q ss_pred             cCChHHHHHHHHHHHHc
Q 016681          141 MRNLESALVVYEEMLKR  157 (384)
Q Consensus       141 ~~~~~~a~~~~~~~~~~  157 (384)
                      .|++++|...|+.+.+.
T Consensus        89 ~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           89 EGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            55555555555444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.37  E-value=2.8e-06  Score=62.30  Aligned_cols=132  Identities=20%  Similarity=0.103  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-Chh
Q 016681          235 AFNEMIRRLCECGNAKQANGMLTLALDKGFS-PN----EITYSHLIGGYAKEGEIQEVLKLYYEMEYKS----ISP-TLP  304 (384)
Q Consensus       235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~  304 (384)
                      ++..+...+...|++++|...+++..+.... ++    ...+..+...+...|++++|...+++..+..    -.+ ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            3444555555556666665555554432100 01    1355556666666777777777776654321    000 133


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CCHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          305 AYTSLISSLCQCGKLEEADKYFKIMKSH----SLV-PGVDIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      ++..+...+...|++++|...+++..+.    +.. .....+..+...+...|++++|.+.+++..+
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4566667777777777777777766542    111 1134566677777888888888888877654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.35  E-value=5e-06  Score=60.91  Aligned_cols=59  Identities=12%  Similarity=0.041  Sum_probs=24.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681          131 YSLIVYAKVKMRNLESALVVYEEMLKR----GFS-ANSFVYTTFIGAYCEYGKIEEANCLMQEM  189 (384)
Q Consensus       131 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  189 (384)
                      +..+...+...|++++|.+.+++..+.    +.. .....+..+...+...|++++|.+.+++.
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            333444444445555555444444322    000 01223334444444455555555444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.35  E-value=7.8e-05  Score=66.70  Aligned_cols=173  Identities=9%  Similarity=0.006  Sum_probs=116.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcc----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 016681           73 QLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEER----------IEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR  142 (384)
Q Consensus        73 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  142 (384)
                      ..++|++.++++...+ +.+..+|+.--.++...|+          ++++++.++.+.+...+ +..+|+.-...+.+.+
T Consensus        44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence            3456677777777665 5556667666666666665          77777777777776554 6667776666677777


Q ss_pred             --ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--------
Q 016681          143 --NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYG-KIEEANCLMQEMENAGLKPYDETFNLLIEGCAKA--------  211 (384)
Q Consensus       143 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------  211 (384)
                        +++++.+.++++.+.... +...|+.-..++.+.| .++++++.++++.+.. +-+...|+.....+.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence              557777777777776444 6667776666667777 6777777777776654 34555666555555442        


Q ss_pred             ------CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 016681          212 ------KRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAK  250 (384)
Q Consensus       212 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  250 (384)
                            +.++++++.+++.....+. +...|...-..+.+.+..+
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~  243 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD  243 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence                  5578888888888877655 6777877777776666533

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.33  E-value=9.1e-06  Score=68.69  Aligned_cols=137  Identities=7%  Similarity=0.006  Sum_probs=69.5

Q ss_pred             hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681           25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII  104 (384)
Q Consensus        25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  104 (384)
                      .+..+...+.+.|++++|+..|++.++.-.  ...          ....       .+...... +.+..+|..+..++.
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~~~----------~~~~-------~~~~~~~~-~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--GSR----------AAAE-------DADGAKLQ-PVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHH----------HHSC-------HHHHGGGH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--cCc----------cccC-------hHHHHHHH-HHHHHHHHHHHHHHH
Confidence            455666667777777777777776665200  000          0000       00000011 223445555555666


Q ss_pred             hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 016681          105 QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEAN  183 (384)
Q Consensus       105 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  183 (384)
                      +.|++++|++.+++.++.... +...+..+..++...|++++|.+.|++..+.... +...+..+..++...++.+++.
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666554322 4555555556666666666666666665554221 4445555555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.33  E-value=5.5e-05  Score=67.66  Aligned_cols=173  Identities=9%  Similarity=-0.014  Sum_probs=138.4

Q ss_pred             ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc
Q 016681           38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ----------LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE  107 (384)
Q Consensus        38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  107 (384)
                      ..++|++.++.+...++. +..+|+.--..+...|+          ++++++.++.+.+.+ +-+..+|+.-...+.+.+
T Consensus        44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence            446789999999987543 56677777666666666          899999999999887 778899999998999999


Q ss_pred             --chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc--------
Q 016681          108 --RIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR-NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY--------  176 (384)
Q Consensus       108 --~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------  176 (384)
                        +++++++.++++.+.+.. +..+|+.-...+.+.| .++++.+.++++.+..+. |...|+....++.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence              679999999999998766 8889988888888888 899999999999887554 788888877777663        


Q ss_pred             ------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchH
Q 016681          177 ------GKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIE  215 (384)
Q Consensus       177 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  215 (384)
                            +.++++++.+++..... +-+...|.-.-..+.+.++.+
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~  243 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD  243 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred             cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence                  45788999998888765 455677777766666666533

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.32  E-value=2e-06  Score=59.51  Aligned_cols=86  Identities=12%  Similarity=0.045  Sum_probs=49.3

Q ss_pred             cCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHH
Q 016681           36 SDRNDLVWRIYQHMLENIR--YPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGM  113 (384)
Q Consensus        36 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  113 (384)
                      .|++++|+..|++.++.+.  +.+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence            4566666666666665421  1134455666666666666666666666666554 445566666666666666666666


Q ss_pred             HHHHHHHHc
Q 016681          114 VLLKRMLRK  122 (384)
Q Consensus       114 ~~~~~~~~~  122 (384)
                      +.+++....
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666666554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.31  E-value=1.2e-05  Score=67.95  Aligned_cols=138  Identities=9%  Similarity=-0.001  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV  139 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  139 (384)
                      .+..+...+.+.|++++|+..|++..+..  +..          ......+.       ..... +.+..+|..+..++.
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~-------~~~~~-~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDAD-------GAKLQ-PVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHH-------HGGGH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHH-------HHHHH-HHHHHHHHHHHHHHH
Confidence            45556666777777777777777665421  000          00001111       11111 114567888999999


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHH
Q 016681          140 KMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLS  219 (384)
Q Consensus       140 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  219 (384)
                      +.|++++|.+.+++..+... .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...++.+++.+
T Consensus       285 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998743 367888999999999999999999999998865 3455677777777777787777654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.29  E-value=2.5e-05  Score=57.43  Aligned_cols=63  Identities=11%  Similarity=0.079  Sum_probs=32.6

Q ss_pred             HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681           94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR  157 (384)
Q Consensus        94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  157 (384)
                      ..|..+..++.+.|++++|+..+++.+..... +...|..+..++...|++++|...|+...+.
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            44455555555555555555555555554322 4445555555555555555555555555444

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.25  E-value=2.2e-05  Score=57.71  Aligned_cols=101  Identities=12%  Similarity=0.027  Sum_probs=86.1

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhc--------CC--------C-CCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLEN--------IR--------Y-PNEATIRTLISALCKGGQLQTYVDMLDRI   84 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~--------~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   84 (384)
                      .+..+......+.+.|++++|+..|...++.        ..        . .+...|..+..++.+.|++++|+..+++.
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4556777888999999999999999998875        00        1 13467888899999999999999999999


Q ss_pred             HhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 016681           85 HGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN  123 (384)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  123 (384)
                      ...+ +.+...|..+..++...|++++|...|++.....
T Consensus        90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            8876 7778999999999999999999999999998874

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.23  E-value=3e-05  Score=55.81  Aligned_cols=97  Identities=13%  Similarity=-0.036  Sum_probs=51.6

Q ss_pred             hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCC-C-----CH-----HHHHHHHHHHHccCChHHHHHHHHHHHhC----
Q 016681           23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRY-P-----NE-----ATIRTLISALCKGGQLQTYVDMLDRIHGK----   87 (384)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----   87 (384)
                      ...+......+.+.|++++|+..|++.++.... |     +.     ..|..+..++.+.|++++|+..+++....    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            344555666777888888888888887775332 1     11     14555555555555555555555554443    


Q ss_pred             ---CCCCcHHhH----HHHHHHHHhhcchHHHHHHHHHHH
Q 016681           88 ---RCSPMVIVN----TSLILRIIQEERIEEGMVLLKRML  120 (384)
Q Consensus        88 ---~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~  120 (384)
                         + +.+...|    .....++...|++++|+..|++..
T Consensus        91 ~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           91 GELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             CCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence               2 2233344    444444444444444444444443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.21  E-value=5.8e-06  Score=69.09  Aligned_cols=149  Identities=10%  Similarity=0.025  Sum_probs=74.0

Q ss_pred             hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 016681           23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR  102 (384)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  102 (384)
                      ...+..+...+.+.|++++|...|+...+.  .|+...       +...++.+++...+.          ...|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            344666667777788888888888877664  233221       112222222222111          1366777777


Q ss_pred             HHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH-HHhcCCHHH
Q 016681          103 IIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGA-YCEYGKIEE  181 (384)
Q Consensus       103 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~  181 (384)
                      +.+.|++++|+..+++.++.... +...|..+..++...|++++|...|++..+.... +...+..+... ....+..+.
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888887776432 6677777888888888888888888877654221 34444444444 233455667


Q ss_pred             HHHHHHHHHHc
Q 016681          182 ANCLMQEMENA  192 (384)
Q Consensus       182 a~~~~~~~~~~  192 (384)
                      +...|..+...
T Consensus       318 a~~~~~~~l~~  328 (338)
T 2if4_A          318 QKEMYKGIFKG  328 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHHhhCC
Confidence            77777777553

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.19  E-value=7.3e-06  Score=68.47  Aligned_cols=96  Identities=11%  Similarity=0.045  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHH-H
Q 016681          270 TYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGI-H  348 (384)
Q Consensus       270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~  348 (384)
                      .|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+..+. +...+..+... .
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~  309 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAE  309 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence            77888889999999999999999988774 446778888999999999999999999998875433 44555555555 3


Q ss_pred             hccCCHHHHHHHHHHHHhC
Q 016681          349 LEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       349 ~~~g~~~~a~~~~~~~~~~  367 (384)
                      ...+..+.+...|.+|...
T Consensus       310 ~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          310 QEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHHHHHhhCC
Confidence            4456777888888888754

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.16  E-value=3.5e-05  Score=55.46  Aligned_cols=93  Identities=14%  Similarity=-0.053  Sum_probs=55.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCC------C-----hhhHHHHHHHHHhcCChHHHHHHHHHHhhC-------CC
Q 016681          273 HLIGGYAKEGEIQEVLKLYYEMEYKSISP------T-----LPAYTSLISSLCQCGKLEEADKYFKIMKSH-------SL  334 (384)
Q Consensus       273 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~  334 (384)
                      .....+.+.|++++|...|++..+.....      +     ...|..+..++.+.|++++|+..+++.++.       ++
T Consensus        16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p   95 (159)
T 2hr2_A           16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   95 (159)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence            33444445555555555555554432110      1     126666666677777777777777766664       32


Q ss_pred             CCCHhHH----HHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          335 VPGVDIY----ESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       335 ~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      . +...|    .....++...|++++|+..|++.++
T Consensus        96 d-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           96 D-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             T-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             c-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            2 34556    6777777777777777777777664

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.15  E-value=0.00013  Score=51.92  Aligned_cols=110  Identities=14%  Similarity=-0.040  Sum_probs=54.8

Q ss_pred             ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHH
Q 016681          248 NAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQ----CGKLEEAD  323 (384)
Q Consensus       248 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~  323 (384)
                      ++++|...|++..+.|. |+..    +...|...+.+++|.+.|++..+.|   +...+..|...|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            34445555555544431 1221    3444444444555555555555443   33444445555544    45555555


Q ss_pred             HHHHHHhhCCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHHHhCC
Q 016681          324 KYFKIMKSHSLVPGVDIYESLVGIHLE----KGNKAKALHLCEEMVSEG  368 (384)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~  368 (384)
                      .+|++..+.|   ++..+..|...|..    .++.++|..++++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            5555555543   34445555555555    555566666666555554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.13  E-value=0.00019  Score=51.06  Aligned_cols=86  Identities=8%  Similarity=-0.071  Sum_probs=37.8

Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh--
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK----MRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCE--  175 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  175 (384)
                      .|...+.+++|.+.|++..+.|   +...+..+...|..    .+++++|.++|++..+.|   +...+..+...|..  
T Consensus        34 ~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~  107 (138)
T 1klx_A           34 VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGK  107 (138)
T ss_dssp             HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred             HHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCC
Confidence            3333344444444444444443   33344444444444    444444444444444432   23334444444444  


Q ss_pred             --cCCHHHHHHHHHHHHHcC
Q 016681          176 --YGKIEEANCLMQEMENAG  193 (384)
Q Consensus       176 --~~~~~~a~~~~~~~~~~~  193 (384)
                        .+++++|.++|++..+.|
T Consensus       108 g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          108 GVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCcCHHHHHHHHHHHHHCC
Confidence              444445554444444433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.00  E-value=6e-05  Score=51.05  Aligned_cols=90  Identities=12%  Similarity=0.006  Sum_probs=55.7

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc------HHh
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM------VIV   95 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~   95 (384)
                      +...|..+...+...|++++|++.|+...+... .+...+..+..++...|++++|+..+++..... +.+      ...
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence            455666667777777777777777777766533 256666677777777777777777777776654 222      334


Q ss_pred             HHHHHHHHHhhcchHHHH
Q 016681           96 NTSLILRIIQEERIEEGM  113 (384)
Q Consensus        96 ~~~l~~~~~~~~~~~~a~  113 (384)
                      +..+..++...|+++.|.
T Consensus        81 ~~~~~~~~~~~~~~~~a~   98 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPV   98 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCS
T ss_pred             HHHHHHHHHHHHhHhhhH
Confidence            444444555555444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.00  E-value=6.6e-05  Score=51.42  Aligned_cols=62  Identities=11%  Similarity=-0.024  Sum_probs=25.4

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRI   84 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   84 (384)
                      +...+..+...+...|++++|...|+...+... .+...|..+...+...|++++|...|++.
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334444444444444444444444444443321 12333344444444444444444444433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.99  E-value=6.3e-05  Score=51.52  Aligned_cols=77  Identities=12%  Similarity=0.133  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681           77 YVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEML  155 (384)
Q Consensus        77 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  155 (384)
                      |+..|++..+.. +.+...+..+...+...|++++|+..|++..+.... +...+..+..++...|++++|...|++..
T Consensus         4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            333444444333 333444444444444444444444444444443221 33344444444444444444444444443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.96  E-value=6.9e-05  Score=65.46  Aligned_cols=97  Identities=11%  Similarity=-0.067  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhhHHHHHHHHHhcCchHHHHHHHHHHHh-----CCCC-C
Q 016681          165 VYTTFIGAYCEYGKIEEANCLMQEMENA-----G-LKPY-DETFNLLIEGCAKAKRIEESLSYCEQMMS-----RKLL-P  231 (384)
Q Consensus       165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~  231 (384)
                      +++.|..+|...|++++|+.++++..+.     | -.|+ ..+++.+...|...|++++|..++++..+     .|.. |
T Consensus       353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp  432 (490)
T 3n71_A          353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP  432 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            4444555555555555555555444321     1 0111 23444555555555555555555544432     1211 1


Q ss_pred             -ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681          232 -SCSAFNEMIRRLCECGNAKQANGMLTLALD  261 (384)
Q Consensus       232 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  261 (384)
                       ...+.+.+..++...+.+++|+.++..+.+
T Consensus       433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             122233444445555555555555555544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.94  E-value=5.5e-05  Score=66.07  Aligned_cols=26  Identities=15%  Similarity=0.003  Sum_probs=12.9

Q ss_pred             HhHHHHHHHHHhhcchHHHHHHHHHH
Q 016681           94 IVNTSLILRIIQEERIEEGMVLLKRM  119 (384)
Q Consensus        94 ~~~~~l~~~~~~~~~~~~a~~~~~~~  119 (384)
                      .+++.|...|...|++++|+.++++.
T Consensus       352 ~~~~nLa~~y~~~g~~~eA~~~~~~a  377 (490)
T 3n71_A          352 RLLSIASEVLSYLQAYEEASHYARRM  377 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34444555555555555555554444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.93  E-value=0.00014  Score=47.10  Aligned_cols=79  Identities=16%  Similarity=0.063  Sum_probs=41.9

Q ss_pred             hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 016681           23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR  102 (384)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  102 (384)
                      ...+..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++..... +.+...+..+...
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            44555555556666666666666666555422 244555555555555666666666665555443 3334444444433


Q ss_pred             H
Q 016681          103 I  103 (384)
Q Consensus       103 ~  103 (384)
                      +
T Consensus        87 ~   87 (91)
T 1na3_A           87 K   87 (91)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.93  E-value=6e-05  Score=51.09  Aligned_cols=66  Identities=12%  Similarity=0.126  Sum_probs=42.1

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 016681           57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN  123 (384)
Q Consensus        57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  123 (384)
                      +...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|++.+++..+..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            34455566666666677777777776666554 4456666666666666667777766666666543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.90  E-value=0.00017  Score=46.64  Aligned_cols=62  Identities=11%  Similarity=0.060  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  122 (384)
                      .+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+.
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34444444455555555555555544433 333444444444555555555555555554443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.83  E-value=0.00012  Score=52.53  Aligned_cols=36  Identities=6%  Similarity=-0.071  Sum_probs=15.8

Q ss_pred             CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016681           37 DRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ   73 (384)
Q Consensus        37 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   73 (384)
                      +.+++|.+.++...+.... +...|..+..++...++
T Consensus        16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~   51 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQ   51 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcc
Confidence            3444444444444443221 44444444444444433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.82  E-value=0.00016  Score=51.91  Aligned_cols=58  Identities=16%  Similarity=0.200  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 016681          145 ESALVVYEEMLKRGFSANSFVYTTFIGAYCEY-----------GKIEEANCLMQEMENAGLKPYDETFNLLI  205 (384)
Q Consensus       145 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  205 (384)
                      ++|...|++..+.... +...|..+..+|...           |++++|++.|++..+.  .|+...|...+
T Consensus        63 ~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al  131 (158)
T 1zu2_A           63 QEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL  131 (158)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            3555555555554322 444555555555544           3667777777766663  35544444333

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.69  E-value=0.00021  Score=47.44  Aligned_cols=64  Identities=14%  Similarity=0.085  Sum_probs=54.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681          267 NEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  331 (384)
                      +...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            67788888899999999999999999988875 34567888888999999999999999988775

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.58  E-value=0.00046  Score=45.74  Aligned_cols=57  Identities=9%  Similarity=0.016  Sum_probs=21.5

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHH
Q 016681           61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKR  118 (384)
Q Consensus        61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  118 (384)
                      +..+...+...|++++|+..|++..+.+ +.+...|..+..++...|++++|.+.|++
T Consensus        10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~   66 (100)
T 3ma5_A           10 RYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQ   66 (100)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3333333333344444444433333332 22233333333333334444444333333

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.53  E-value=0.0056  Score=50.64  Aligned_cols=63  Identities=13%  Similarity=0.043  Sum_probs=31.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681          127 DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMEN  191 (384)
Q Consensus       127 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  191 (384)
                      +..+|..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|.+.|++...
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr  338 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN  338 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            44444444444444455555555555555543  3444444444555555555555555555444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.33  E-value=0.0087  Score=49.52  Aligned_cols=74  Identities=15%  Similarity=0.025  Sum_probs=52.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHH
Q 016681          265 SPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYE  342 (384)
Q Consensus       265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  342 (384)
                      +.+...|..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|.+.|++....+  |...+|.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~  347 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLY  347 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHH
Confidence            4466777777666666788888888888887775  666666666777777888888888887777643  4445543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.20  E-value=0.0039  Score=40.47  Aligned_cols=67  Identities=9%  Similarity=-0.049  Sum_probs=41.4

Q ss_pred             CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 016681          266 PNEITYSHLIGGYAKEGE---IQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHS  333 (384)
Q Consensus       266 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  333 (384)
                      .++..+..+..++...++   .++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+..
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            455666666666543333   567777777766654 3345555666666667777777777777776643

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.17  E-value=0.0022  Score=55.12  Aligned_cols=87  Identities=14%  Similarity=0.065  Sum_probs=63.2

Q ss_pred             hcCCHHHHHHHHHHHHhc---CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCC-CC-HhHHHHHH
Q 016681          280 KEGEIQEVLKLYYEMEYK---SISPT----LPAYTSLISSLCQCGKLEEADKYFKIMKS-----HSLV-PG-VDIYESLV  345 (384)
Q Consensus       280 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~l~  345 (384)
                      ..|++++|..++++..+.   -+.|+    ..+++.|..+|...|++++|..++++..+     .|.. |+ ..+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            357788888888876542   12232    34678888889999999999998888764     3322 22 34578888


Q ss_pred             HHHhccCCHHHHHHHHHHHHh
Q 016681          346 GIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       346 ~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      ..|...|++++|..++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            889999999999998888764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.15  E-value=0.0042  Score=40.68  Aligned_cols=58  Identities=10%  Similarity=0.042  Sum_probs=33.0

Q ss_pred             HHHHhhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 016681           30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEA-TIRTLISALCKGGQLQTYVDMLDRIHGKR   88 (384)
Q Consensus        30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   88 (384)
                      ...+.+.|++++|...|+...+... .+.. .+..+..++...|++++|...|++..+..
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            3445556666666666666655432 1344 55555666666666666666666655543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.06  E-value=0.0065  Score=52.24  Aligned_cols=92  Identities=15%  Similarity=0.070  Sum_probs=64.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcC---CCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCC-CC-HhH
Q 016681          275 IGGYAKEGEIQEVLKLYYEMEYKS---ISPT----LPAYTSLISSLCQCGKLEEADKYFKIMKS-----HSLV-PG-VDI  340 (384)
Q Consensus       275 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~  340 (384)
                      +..+.+.|++++|..++++..+..   +.|+    ..+++.+..+|...|++++|..++++..+     .|.. |+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            444556788888888888876531   2222    34677788888888888888888887754     2322 22 345


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          341 YESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       341 ~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      ++.|...|...|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            77888888888888888888888654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.02  E-value=0.0024  Score=54.82  Aligned_cols=85  Identities=9%  Similarity=-0.073  Sum_probs=48.0

Q ss_pred             CChHHHHHHHHHHHHc-----CCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhhHHHHHHH
Q 016681          142 RNLESALVVYEEMLKR-----GFS--ANSFVYTTFIGAYCEYGKIEEANCLMQEMENA-----G-LKPY-DETFNLLIEG  207 (384)
Q Consensus       142 ~~~~~a~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~  207 (384)
                      |++++|..++++..+.     |..  ....+++.+..+|...|++++|+.++++..+.     | -.|+ ..+++.+...
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            4666666666655432     111  12345666666677777777777666665431     2 1122 2456666666


Q ss_pred             HHhcCchHHHHHHHHHHHh
Q 016681          208 CAKAKRIEESLSYCEQMMS  226 (384)
Q Consensus       208 ~~~~~~~~~a~~~~~~~~~  226 (384)
                      |...|++++|..++++..+
T Consensus       392 ~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHH
Confidence            7777777777766666543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.98  E-value=0.044  Score=51.60  Aligned_cols=46  Identities=11%  Similarity=0.141  Sum_probs=25.2

Q ss_pred             HHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016681          103 IIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEM  154 (384)
Q Consensus       103 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  154 (384)
                      ....|+++.|+++.+.+      .+...|..+...+.+.++++.|.+.|..+
T Consensus       662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            34455666665554322      14455666666666666666666666554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.98  E-value=0.084  Score=49.68  Aligned_cols=130  Identities=13%  Similarity=0.017  Sum_probs=68.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 016681          167 TTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC  246 (384)
Q Consensus       167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  246 (384)
                      ..++..+.+.|.++.|.++.++-.            .-.......|+++.|.++.+.+      .+...|..+...+.+.
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~  694 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR  694 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence            555666666666666665542110            0122234556777776664332      2556777777777777


Q ss_pred             CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681          247 GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYF  326 (384)
Q Consensus       247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  326 (384)
                      ++++.|++.|..+..         |..+...+...++.+...++-+.....|      -++....++.+.|++++|.+++
T Consensus       695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~  759 (814)
T 3mkq_A          695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL  759 (814)
T ss_dssp             TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence            777777777766542         2233333344555555444444444333      2233333444555566655555


Q ss_pred             HHH
Q 016681          327 KIM  329 (384)
Q Consensus       327 ~~~  329 (384)
                      .++
T Consensus       760 ~~~  762 (814)
T 3mkq_A          760 IKS  762 (814)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.97  E-value=0.009  Score=39.04  Aligned_cols=60  Identities=8%  Similarity=-0.001  Sum_probs=44.8

Q ss_pred             HHHHHHccCChHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 016681           64 LISALCKGGQLQTYVDMLDRIHGKRCSPMVI-VNTSLILRIIQEERIEEGMVLLKRMLRKNM  124 (384)
Q Consensus        64 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  124 (384)
                      ....+...|++++|...|++..+.. +.+.. .+..+..++...|++++|.+.|++..+...
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            3455667788888888888877765 55566 777788888888888888888888877653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.95  E-value=0.019  Score=37.13  Aligned_cols=68  Identities=13%  Similarity=0.121  Sum_probs=42.7

Q ss_pred             CCchhhHHHHHHHHhhcCC---hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 016681           20 SLSLISFNTLIHVVTKSDR---NDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKR   88 (384)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   88 (384)
                      +.++..+..+..++...++   .++|..++++.++.... +......+...+.+.|++++|+..|+++....
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            3455666666666544433   56777777777665432 55666666666777777777777777776654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.94  E-value=0.013  Score=40.98  Aligned_cols=102  Identities=9%  Similarity=0.050  Sum_probs=53.5

Q ss_pred             ChhhHHHHHHHHHhcCCh------HHHHHHHHHHHhcCCCCCH-HHHHHHHHHH---H---hcCCHHHHHHHHHHHHhcC
Q 016681          232 SCSAFNEMIRRLCECGNA------KQANGMLTLALDKGFSPNE-ITYSHLIGGY---A---KEGEIQEVLKLYYEMEYKS  298 (384)
Q Consensus       232 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~---~---~~~~~~~a~~~~~~~~~~~  298 (384)
                      |..+|-..+....+.|++      ++..++|++.... ++|+. ..|...+..+   +   ..+++++|.++|+.+++.+
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            455666666666666666      6666666666554 33322 1222222211   1   2355666666666665442


Q ss_pred             CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 016681          299 ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLV  335 (384)
Q Consensus       299 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  335 (384)
                      -.. ...|....+--.++|+...|.+++.+.+..+.+
T Consensus        91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            222 444444444455666666666666666665554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.93  E-value=0.0064  Score=52.27  Aligned_cols=88  Identities=10%  Similarity=0.046  Sum_probs=59.5

Q ss_pred             HhcCChHHHHHHHHHHHHcC---CCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhhHHHH
Q 016681          139 VKMRNLESALVVYEEMLKRG---FSA----NSFVYTTFIGAYCEYGKIEEANCLMQEMENA-----G-LKPY-DETFNLL  204 (384)
Q Consensus       139 ~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l  204 (384)
                      .+.|++++|..++++..+..   +.|    ...+++.+..+|...|++++|+.++++..+.     | ..|+ ..+++.+
T Consensus       298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            35677888888887776531   111    2346777788888888888888888776532     2 1222 3567777


Q ss_pred             HHHHHhcCchHHHHHHHHHHHh
Q 016681          205 IEGCAKAKRIEESLSYCEQMMS  226 (384)
Q Consensus       205 ~~~~~~~~~~~~a~~~~~~~~~  226 (384)
                      ...|...|++++|..++++..+
T Consensus       378 a~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          378 GKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Confidence            8888888888888888777654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.91  E-value=0.0039  Score=44.26  Aligned_cols=84  Identities=14%  Similarity=0.025  Sum_probs=64.0

Q ss_pred             ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChHHH
Q 016681          248 NAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG---EIQEVLKLYYEMEYKSISP--TLPAYTSLISSLCQCGKLEEA  322 (384)
Q Consensus       248 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a  322 (384)
                      ....+.+.|....+.+. ++..+...+..++++.+   +.+++..+++...+.. .|  +...+-.+.-++.+.|++++|
T Consensus        13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence            35566777777766655 68888888888888888   6668999999888764 34  344555577788999999999


Q ss_pred             HHHHHHHhhCC
Q 016681          323 DKYFKIMKSHS  333 (384)
Q Consensus       323 ~~~~~~~~~~~  333 (384)
                      .+.++.+.+..
T Consensus        91 ~~y~~~lL~ie  101 (152)
T 1pc2_A           91 LKYVRGLLQTE  101 (152)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            99999998853

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.89  E-value=0.019  Score=40.79  Aligned_cols=79  Identities=15%  Similarity=0.225  Sum_probs=36.8

Q ss_pred             HHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc---chHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHH
Q 016681           77 YVDMLDRIHGKRCSPMVIVNTSLILRIIQEE---RIEEGMVLLKRMLRKNMIH--DTIAYSLIVYAKVKMRNLESALVVY  151 (384)
Q Consensus        77 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~  151 (384)
                      +.+.|.+....+ +++..+...+..++++++   +.++++.+++++.+.+ .|  +...+-.+.-++.+.|++++|.+.+
T Consensus        17 ~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           17 FEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            333344333333 344444444555555544   4445555555555443 11  1223333444455555555555555


Q ss_pred             HHHHHc
Q 016681          152 EEMLKR  157 (384)
Q Consensus       152 ~~~~~~  157 (384)
                      +.+.+.
T Consensus        95 ~~lL~i  100 (152)
T 1pc2_A           95 RGLLQT  100 (152)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            555554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.72  E-value=0.031  Score=39.22  Aligned_cols=51  Identities=8%  Similarity=0.025  Sum_probs=26.0

Q ss_pred             CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016681          247 GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKS  298 (384)
Q Consensus       247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  298 (384)
                      +++++|.++|+.+.+.+-.- ...|......-.+.|+...|.+++.+....+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            45555555555554432221 4444444444445555555555555555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.69  E-value=0.02  Score=37.95  Aligned_cols=66  Identities=11%  Similarity=0.029  Sum_probs=36.9

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENI------RYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK   87 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   87 (384)
                      ++..+-.+...+.+.+++..|..+|+...+..      ..+....+..+..++.+.|+++.|...+++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            44455556666666666666666666655431      1123445555555555666666666666555544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.61  E-value=0.19  Score=39.97  Aligned_cols=84  Identities=15%  Similarity=0.092  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHh-----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CChH
Q 016681          180 EEANCLMQEMENAGLKPY---DETFNLLIEGCAK-----AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC-GNAK  250 (384)
Q Consensus       180 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~  250 (384)
                      ..|...+++..+.+  |+   ...|..+...|.+     .|+.++|.+.|++..+.++.-+..++......++.. |+.+
T Consensus       180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            34444455544432  33   2345555555555     255555555555555544322344444455555542 5555


Q ss_pred             HHHHHHHHHHhcCCC
Q 016681          251 QANGMLTLALDKGFS  265 (384)
Q Consensus       251 ~a~~~~~~~~~~~~~  265 (384)
                      .+.+.+++.....+.
T Consensus       258 ~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          258 GFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHcCCCC
Confidence            555555555554433

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.57  E-value=0.061  Score=39.24  Aligned_cols=46  Identities=11%  Similarity=0.024  Sum_probs=23.7

Q ss_pred             HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 016681           33 VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRI   84 (384)
Q Consensus        33 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   84 (384)
                      ..+.|+++.|.++.+.+      .+...|..|.......|+++-|.+.|.+.
T Consensus        15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            34455555555554433      24455555555555555555555555543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.55  E-value=0.099  Score=35.90  Aligned_cols=65  Identities=8%  Similarity=0.037  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 016681          269 ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSL  334 (384)
Q Consensus       269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  334 (384)
                      ..+...+..+...|.-++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.++.+.|+
T Consensus        92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            34444455555555555555555554332 245555555555555555555555555555555554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.51  E-value=0.04  Score=43.80  Aligned_cols=96  Identities=8%  Similarity=0.010  Sum_probs=59.0

Q ss_pred             CChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHcc-----CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhh-c
Q 016681           37 DRNDLVWRIYQHMLENIRYPN---EATIRTLISALCKG-----GQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQE-E  107 (384)
Q Consensus        37 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~  107 (384)
                      +....|...+++.++.  .|+   ...|..+...|...     |+.++|.+.|++..+.+..-+..++......++.. |
T Consensus       177 ~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g  254 (301)
T 3u64_A          177 DTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN  254 (301)
T ss_dssp             HHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred             HhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence            3455666666666664  334   44666666666663     77777777777776664222366666666666663 7


Q ss_pred             chHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 016681          108 RIEEGMVLLKRMLRKNMI--HDTIAYSLI  134 (384)
Q Consensus       108 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l  134 (384)
                      +.+++.+.+++..+....  |+....+.+
T Consensus       255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~  283 (301)
T 3u64_A          255 NRAGFDEALDRALAIDPESVPHNKLLVIL  283 (301)
T ss_dssp             CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence            777777777777776555  554444433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.50  E-value=0.11  Score=35.73  Aligned_cols=66  Identities=15%  Similarity=0.089  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016681          128 TIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL  194 (384)
Q Consensus       128 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  194 (384)
                      ...+...+..+...|.-+.-.+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus        91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            34455556666666666666666666433 2345666666666777777777777777766666664

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.41  E-value=0.044  Score=36.26  Aligned_cols=64  Identities=13%  Similarity=-0.065  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681          269 ITYSHLIGGYAKEGEIQEVLKLYYEMEYKS------ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH  332 (384)
Q Consensus       269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  332 (384)
                      ..+..+...+.+.+++..|...|+...+..      -.+....+..+..++.+.|+++.|...++++.+.
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            334445555555555555555555543320      0123344555556666666666666666666553

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.14  E-value=0.78  Score=43.24  Aligned_cols=257  Identities=12%  Similarity=0.034  Sum_probs=120.3

Q ss_pred             HHccCChHHHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHH
Q 016681           68 LCKGGQLQTYVDMLDRIHGKR--CSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNM-------IHDTIAYSLIVYAK  138 (384)
Q Consensus        68 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll~~~  138 (384)
                      ....|+.++++.+++.....+  -.+....-..+.-+.+..|..+++.+++.......-       .+....-..+.-++
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            344556666666665544311  012222333333445555555566666666554321       01111122222233


Q ss_pred             HhcCC-hHHHHHHHHHHHHcCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCc
Q 016681          139 VKMRN-LESALVVYEEMLKRGFSANSF--VYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEG--CAKAKR  213 (384)
Q Consensus       139 ~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~  213 (384)
                      +-.|. -+++.+.+..+....- +...  .--++...+.-.|+.+....++..+.+..   +......+..+  +...|+
T Consensus       464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~  539 (963)
T 4ady_A          464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR  539 (963)
T ss_dssp             HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred             HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence            33332 2344555555444311 0111  11122333445566666666666665432   22233333333  335677


Q ss_pred             hHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 016681          214 IEESLSYCEQMMSRKLLPSCSAF--NEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLY  291 (384)
Q Consensus       214 ~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  291 (384)
                      .+.+..+.+.+.... .|....-  .++.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.+++
T Consensus       540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv  617 (963)
T 4ady_A          540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV  617 (963)
T ss_dssp             GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred             hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            777777777776531 1121111  223345667778777777777777541 222332333333444456666666666


Q ss_pred             HHHHhcCCCCChhhHHHHHHHHHhcCCh-HHHHHHHHHHhh
Q 016681          292 YEMEYKSISPTLPAYTSLISSLCQCGKL-EEADKYFKIMKS  331 (384)
Q Consensus       292 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~  331 (384)
                      ..+.+.+ .|....-..+.-+....|.. .++...+..+..
T Consensus       618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            6555543 34433333344444444443 466777777654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.86  E-value=0.24  Score=33.77  Aligned_cols=85  Identities=11%  Similarity=-0.004  Sum_probs=49.3

Q ss_pred             CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH---HHHHHHHHHhCCCCC--cHHhHHHHHHHHHhhcchHH
Q 016681           37 DRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQT---YVDMLDRIHGKRCSP--MVIVNTSLILRIIQEERIEE  111 (384)
Q Consensus        37 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~  111 (384)
                      .....+.+-|......|. |+..+-..+..++.+..+...   ++.+++.+.+.+ .|  .....-.+.-++.+.|++++
T Consensus        15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence            344455555555544443 566666666666666665544   667777766654 22  33344445556666677777


Q ss_pred             HHHHHHHHHHcC
Q 016681          112 GMVLLKRMLRKN  123 (384)
Q Consensus       112 a~~~~~~~~~~~  123 (384)
                      |.+.++.+.+..
T Consensus        93 A~~~~~~lL~~e  104 (126)
T 1nzn_A           93 ALKYVRGLLQTE  104 (126)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            777666666643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.86  E-value=0.069  Score=36.42  Aligned_cols=86  Identities=13%  Similarity=-0.023  Sum_probs=46.4

Q ss_pred             hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCh
Q 016681          245 ECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQE---VLKLYYEMEYKSISP--TLPAYTSLISSLCQCGKL  319 (384)
Q Consensus       245 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~  319 (384)
                      .......+.+.+......|. ++..+--.+..++.+......   ++.++..+.+.+ .|  .....-.|.-++.+.|++
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y   90 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence            33444455555555544433 455555556666666555444   666666665543 12  222333345566666666


Q ss_pred             HHHHHHHHHHhhC
Q 016681          320 EEADKYFKIMKSH  332 (384)
Q Consensus       320 ~~a~~~~~~~~~~  332 (384)
                      ++|.+.++.+.+.
T Consensus        91 ~~A~~~~~~lL~~  103 (126)
T 1nzn_A           91 EKALKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666666664

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.82  E-value=0.35  Score=35.30  Aligned_cols=128  Identities=14%  Similarity=0.178  Sum_probs=83.4

Q ss_pred             HHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 016681          207 GCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQE  286 (384)
Q Consensus       207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  286 (384)
                      ...+.|+++.|.++.+.+      .+...|..+.......|+++-|++.|....+         +..+.-.|...|+.+.
T Consensus        14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred             HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence            344568888888877765      2567888888888888888888888876542         3344445556677777


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHH
Q 016681          287 VLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEM  364 (384)
Q Consensus       287 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  364 (384)
                      ..++-+.....|      -++.-...+...|+++++.++|.+...         |..-+......|..+.|.++.+++
T Consensus        79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence            666655555544      345555666778888888888865432         111222233456677777777765

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.90  E-value=1.7  Score=37.54  Aligned_cols=188  Identities=13%  Similarity=0.094  Sum_probs=88.6

Q ss_pred             cchHHHHHHHHHHHhc-----CCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH----HccC
Q 016681            2 RLFEVAFDVCRYLEQR-----GFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISAL----CKGG   72 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~   72 (384)
                      |++++|++-+-.+.+.     ....+......++..|.+.++++...+.+..+.+...+. ......+++.+    ....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence            3556666665555422     123345556667777777777777666665554432211 12222222222    1122


Q ss_pred             ChHH--HHHHHHHHHh--CC-CCC---cHHhHHHHHHHHHhhcchHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHH
Q 016681           73 QLQT--YVDMLDRIHG--KR-CSP---MVIVNTSLILRIIQEERIEEGMVLLKRMLRK--NMIHD---TIAYSLIVYAKV  139 (384)
Q Consensus        73 ~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~ll~~~~  139 (384)
                      ..+.  -..+.+.+..  .| +-.   .......|...+...|++.+|.+++..+...  +....   ...+...++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            2211  1111111110  01 000   1223345566666677777777777766532  11111   233445556666


Q ss_pred             hcCChHHHHHHHHHHHHc----CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681          140 KMRNLESALVVYEEMLKR----GFSAN--SFVYTTFIGAYCEYGKIEEANCLMQEME  190 (384)
Q Consensus       140 ~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~  190 (384)
                      ..+++..|..++.++...    ...|+  ...+...+..+...+++.+|.+.|.++.
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            677777777666665321    11111  1234455555666666666666665554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.74  E-value=0.33  Score=44.63  Aligned_cols=127  Identities=14%  Similarity=0.067  Sum_probs=79.4

Q ss_pred             HHHHHHHHccCC-hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcc-hHHHHHHHHHHHHc------CCCC-CHH---
Q 016681           62 RTLISALCKGGQ-LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEER-IEEGMVLLKRMLRK------NMIH-DTI---  129 (384)
Q Consensus        62 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~~---  129 (384)
                      ..++..+...++ .+.|.++|+++.......+......++..+...++ --+|.+++.+..+.      ...+ +..   
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            445555555666 57799999998876421222222333333333332 23555666555431      1111 111   


Q ss_pred             -------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681          130 -------AYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEM  189 (384)
Q Consensus       130 -------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  189 (384)
                             ....-.+.+...|+++.|+++-++..... +-+-.+|-.|..+|...|+++.|+-.++.+
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                   12222345667899999999999988762 336789999999999999999999988876

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.43  E-value=0.22  Score=42.13  Aligned_cols=73  Identities=12%  Similarity=0.054  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChHHHHH
Q 016681           95 VNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLK-----RGFSANSFVYTT  168 (384)
Q Consensus        95 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~  168 (384)
                      +...++..+...|+++++...+..+..... .+...+..++.++.+.|+..+|.+.|+.+.+     .|+.|+..+-..
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l  250 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL  250 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            445566777788888888888888776643 3777888888888888888888888877654     378887766543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=94.43  E-value=0.00019  Score=60.77  Aligned_cols=82  Identities=16%  Similarity=0.208  Sum_probs=44.6

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      .+..|..+..+..+.++..+|++-|-+.      -|+..|..++....+.|.+++-+..+.-.++.  ..++.+=+.|+.
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~  124 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF  124 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence            4455666666666666666665544211      24445556666666666666666665544433  223344445666


Q ss_pred             HHHhhcchHH
Q 016681          102 RIIQEERIEE  111 (384)
Q Consensus       102 ~~~~~~~~~~  111 (384)
                      +|++.++..+
T Consensus       125 ayAk~~rL~e  134 (624)
T 3lvg_A          125 ALAKTNRLAE  134 (624)
T ss_dssp             HHHTSCSSST
T ss_pred             HHHhhCcHHH
Confidence            6666665443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.37  E-value=0.82  Score=38.64  Aligned_cols=66  Identities=15%  Similarity=0.234  Sum_probs=32.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHhH
Q 016681          274 LIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS-----HSLVPGVDI  340 (384)
Q Consensus       274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~  340 (384)
                      ++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+.+.+     .|+.|+..+
T Consensus       177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            3444445555555555555544432 33444555555555555555555555554432     355555444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.09  E-value=0.33  Score=44.63  Aligned_cols=50  Identities=6%  Similarity=-0.119  Sum_probs=34.3

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 016681          266 PNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCG  317 (384)
Q Consensus       266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  317 (384)
                      -+..-|..|.....+.+++++|.+.|+.....  +.++..+..|++.|.+.+
T Consensus       611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~  660 (754)
T 4gns_B          611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP  660 (754)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred             cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence            35556777777777777777777777776654  356677777777777655

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=93.88  E-value=3.6  Score=37.16  Aligned_cols=287  Identities=9%  Similarity=-0.021  Sum_probs=141.6

Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 016681           62 RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM  141 (384)
Q Consensus        62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  141 (384)
                      ...+..+.+.+++...+..+..     .+.+...-.....+....|+..+|......+-..|.. ....+..++..+.+.
T Consensus        76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~  149 (618)
T 1qsa_A           76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRAS  149 (618)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHC
Confidence            4455666777777766654432     2556666667777888888888888877777766643 445677777777766


Q ss_pred             CChHH--HHHHHHHHHHcCC-----------CCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh---HHHH
Q 016681          142 RNLES--ALVVYEEMLKRGF-----------SANSF-VYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDET---FNLL  204 (384)
Q Consensus       142 ~~~~~--a~~~~~~~~~~~~-----------~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l  204 (384)
                      |.+..  ...=++.+...|-           .++.. ....++..+.   +...+.....   .  ..++...   +...
T Consensus       150 g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~---~--~~~~~~~~~~~~~~  221 (618)
T 1qsa_A          150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR---T--TGATDFTRQMAAVA  221 (618)
T ss_dssp             TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH---H--SCCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHh---c--cCCChhhHHHHHHH
Confidence            65433  2222222222211           11110 0111111111   1111111110   0  1122211   1112


Q ss_pred             HHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH----HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 016681          205 IEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR----RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAK  280 (384)
Q Consensus       205 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  280 (384)
                      +.-+.+ .+.+.|...+........ .+......+-.    .....+...++...+......  .++.....-.+....+
T Consensus       222 ~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr  297 (618)
T 1qsa_A          222 FASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALG  297 (618)
T ss_dssp             HHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHH
T ss_pred             HHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHH
Confidence            222233 366777777777654332 23322222222    222334244555555554433  2344334444444456


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh------------CCCCC-------C---H
Q 016681          281 EGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS------------HSLVP-------G---V  338 (384)
Q Consensus       281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~~~~-------~---~  338 (384)
                      .|+++.|...|..|...... .....--+.+++...|+.++|..+|+.+.+            .|..+       +   .
T Consensus       298 ~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~  376 (618)
T 1qsa_A          298 TGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVD  376 (618)
T ss_dssp             HTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCC
T ss_pred             CCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHH
Confidence            78888888888777543211 122223355666777888888887776532            12110       0   0


Q ss_pred             h-----HHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681          339 D-----IYESLVGIHLEKGNKAKALHLCEEMVSE  367 (384)
Q Consensus       339 ~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~  367 (384)
                      .     .-..-+..+...|....|...+..+.+.
T Consensus       377 ~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~  410 (618)
T 1qsa_A          377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKS  410 (618)
T ss_dssp             CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence            0     0112244566778888888877777653

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=93.26  E-value=1  Score=29.05  Aligned_cols=62  Identities=13%  Similarity=0.194  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHH
Q 016681          283 EIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLV  345 (384)
Q Consensus       283 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  345 (384)
                      +.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.+- .+...+|..++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l   86 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI   86 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence            444566666666666777777777777777777777777777777766532 22334565554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.09  E-value=6.2  Score=38.82  Aligned_cols=80  Identities=13%  Similarity=0.079  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 016681          131 YSLIVYAKVKMRNLESALVVYEEMLKRGFSAN----SFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIE  206 (384)
Q Consensus       131 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  206 (384)
                      |..++..+.+.+.++.+.+.-....+....-+    ...|..+.+.+...|++++|...+-.+.....+  ......++.
T Consensus       902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~  979 (1139)
T 4fhn_B          902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN  979 (1139)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence            44555555566666666655554444321111    113555666666666666666666555544322  233444444


Q ss_pred             HHHhcC
Q 016681          207 GCAKAK  212 (384)
Q Consensus       207 ~~~~~~  212 (384)
                      .++..+
T Consensus       980 ~lce~~  985 (1139)
T 4fhn_B          980 QLTKQG  985 (1139)
T ss_dssp             HHHHHC
T ss_pred             HHHhCC
Confidence            444433

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.08  E-value=3.9  Score=35.24  Aligned_cols=189  Identities=13%  Similarity=0.113  Sum_probs=100.2

Q ss_pred             cCChHHHHHHHHHHHHc-----CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----hc
Q 016681          141 MRNLESALVVYEEMLKR-----GFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCA----KA  211 (384)
Q Consensus       141 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~  211 (384)
                      .++++.|.+.+-.+.+.     ...........++..|...++++...+.+..+.+..-.. ......+++.+.    ..
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence            36788888777666542     233356667788888899999988888777665432222 122333333322    22


Q ss_pred             CchHH--HHHHHHHHHh---CCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC---HHHHHHHHHHH
Q 016681          212 KRIEE--SLSYCEQMMS---RKLLPS---CSAFNEMIRRLCECGNAKQANGMLTLALDK--GFSPN---EITYSHLIGGY  278 (384)
Q Consensus       212 ~~~~~--a~~~~~~~~~---~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~  278 (384)
                      ...+.  -..+.+.+..   ..+...   ......+...+...|++.+|..++..+...  +....   ...+...++.|
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            22221  1111111111   011111   122345666777778888888777776532  22111   23455566677


Q ss_pred             HhcCCHHHHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHh
Q 016681          279 AKEGEIQEVLKLYYEMEYK----SISPT--LPAYTSLISSLCQCGKLEEADKYFKIMK  330 (384)
Q Consensus       279 ~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~  330 (384)
                      ...+++.+|..++.++...    ...|+  ...+...+..+...+++.+|.+.|.++.
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            7777777777777765321    11111  1234445555666677776666655443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.92  E-value=0.85  Score=31.30  Aligned_cols=69  Identities=13%  Similarity=0.111  Sum_probs=38.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681          264 FSPNEITYSHLIGGYAKEGEI---QEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH  332 (384)
Q Consensus       264 ~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  332 (384)
                      ..|+..+--.+..++.+....   .+++.+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            345555555555555555443   356666666665441112334444556666777777777777776664

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=92.56  E-value=7.3  Score=36.97  Aligned_cols=151  Identities=10%  Similarity=0.002  Sum_probs=64.2

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCChHHHHHHH--HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCchH
Q 016681          140 KMRNLESALVVYEEMLKRGFSANSFVYTTFI--GAYCEYGKIEEANCLMQEMENAGLKPYDETFN--LLIEGCAKAKRIE  215 (384)
Q Consensus       140 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~  215 (384)
                      -.|+-+....++..+.+..   +..+...+.  -++...|+.+.+..+++.+.... .|....-.  ++.-+|+..|+..
T Consensus       502 GTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~  577 (963)
T 4ady_A          502 GTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNS  577 (963)
T ss_dssp             TCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHH
T ss_pred             ccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHH
Confidence            4455555555555544421   222222222  22334566666666666655432 12211111  2223445555655


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 016681          216 ESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEI-QEVLKLYYEM  294 (384)
Q Consensus       216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~  294 (384)
                      ...++++.+.... ..+..-...+.-++...|+.+.+.+++..+.+.+ .|....-..+.-+....|.. .++.+++..+
T Consensus       578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L  655 (963)
T 4ady_A          578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPL  655 (963)
T ss_dssp             HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence            5555666655431 1122222222223333555555555555444432 23333223333333333332 4555566665


Q ss_pred             Hh
Q 016681          295 EY  296 (384)
Q Consensus       295 ~~  296 (384)
                      ..
T Consensus       656 ~~  657 (963)
T 4ady_A          656 TK  657 (963)
T ss_dssp             HT
T ss_pred             cc
Confidence            53

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=92.51  E-value=1.9  Score=30.06  Aligned_cols=70  Identities=13%  Similarity=0.111  Sum_probs=46.8

Q ss_pred             CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 016681          264 FSPNEITYSHLIGGYAKEGEI---QEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHS  333 (384)
Q Consensus       264 ~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  333 (384)
                      ..|+..+--.+..++.++...   .+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+.+..
T Consensus        35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e  107 (144)
T 1y8m_A           35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  107 (144)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            356777766677777766554   4677788777765422233344446667888888888888888888754

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=92.31  E-value=0.00023  Score=60.33  Aligned_cols=264  Identities=13%  Similarity=0.076  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016681           58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA  137 (384)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  137 (384)
                      +..|..|..+....+++.+|++.|-+      ..|+..|..++....+.|.+++-.+.+...++..-.  +..=+.|+.+
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke--~~IDteLi~a  125 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIFA  125 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS--TTTTHHHHHH
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc--cccHHHHHHH
Confidence            34555666666666666555444311      234555666666666666666666665555444222  2233455566


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHH
Q 016681          138 KVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEES  217 (384)
Q Consensus       138 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  217 (384)
                      |++.++..+.++.+       -.||..-...+.+-|...|.++.|.-+|..+..         |..|...+.+.|++..|
T Consensus       126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~A  189 (624)
T 3lvg_A          126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAA  189 (624)
T ss_dssp             HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSS
T ss_pred             HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHH
Confidence            66666655433322       123444455556666666666666555543321         22223333444444444


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016681          218 LSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK  297 (384)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  297 (384)
                      .+.-+      -.-++.||..+-.+|...+.+.-|.-.--.+.-.     +.....++..|...|.+++.+.+++.....
T Consensus       190 VdaAr------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl  258 (624)
T 3lvg_A          190 VDGAR------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL  258 (624)
T ss_dssp             TTTTT------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred             HHHHH------hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence            32111      1125567777777777777666555443333321     112233455566667777777666665533


Q ss_pred             CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC-CCC------CCHhHHHHHHHHHhccCCHHHHH
Q 016681          298 SISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH-SLV------PGVDIYESLVGIHLEKGNKAKAL  358 (384)
Q Consensus       298 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~a~  358 (384)
                      . +.....|+-|.-.|++- ++++..+.++..-.+ +++      -....|..++-.|.+-.+++.|.
T Consensus       259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            2 34555666666666553 345444444432221 110      02233556666666666665543

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=91.94  E-value=6.9  Score=35.34  Aligned_cols=317  Identities=12%  Similarity=0.065  Sum_probs=166.3

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681           26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ  105 (384)
Q Consensus        26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  105 (384)
                      |..... ..+.|++..+..+...+...-+ ..-..|..+...+ ......+....+.+-..  .+.....-+.-+..+.+
T Consensus        10 ~~~a~~-a~~~~~~~~~~~l~~~l~~~pL-~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~   84 (618)
T 1qsa_A           10 YAQIKQ-AWDNRQMDVVEQMMPGLKDYPL-YPYLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELAR   84 (618)
T ss_dssp             HHHHHH-HHHTTCHHHHHHHSGGGTTSTT-HHHHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHCCCHHHHHHHHHhhcCCCc-HHHHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHh
Confidence            333333 3456777777776555432211 1122343333222 12245555555444221  12223333445566667


Q ss_pred             hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH--HH
Q 016681          106 EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE--AN  183 (384)
Q Consensus       106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~  183 (384)
                      .+++...+.++..     .+.+...-.....+....|+..+|......+-..|.. .+..+..++..+.+.|....  ..
T Consensus        85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~  158 (618)
T 1qsa_A           85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYL  158 (618)
T ss_dssp             TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred             CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHH
Confidence            7777766654432     2234444445666777889988888877777666533 56678888888887776433  33


Q ss_pred             HHHHHHHHcC-----------CCCChhhH-HHHHHHHHhcCchHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCC
Q 016681          184 CLMQEMENAG-----------LKPYDETF-NLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCS---AFNEMIRRLCECGN  248 (384)
Q Consensus       184 ~~~~~~~~~~-----------~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~  248 (384)
                      .-++.+...|           +.++.... ..++...   .++..+......     ..++..   .+...+.-+.+ .+
T Consensus       159 ~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar-~d  229 (618)
T 1qsa_A          159 ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFART-----TGATDFTRQMAAVAFASVAR-QD  229 (618)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHH-HC
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHh-cC
Confidence            3333333332           11221111 1111111   112222222111     112222   12222333333 37


Q ss_pred             hHHHHHHHHHHHhcCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 016681          249 AKQANGMLTLALDKGFSPNEITYSHLI----GGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADK  324 (384)
Q Consensus       249 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  324 (384)
                      .+.|...+....+... .+......+-    ......+...++...+.......  ++.......+....+.|+++.|..
T Consensus       230 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~  306 (618)
T 1qsa_A          230 AENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT  306 (618)
T ss_dssp             HHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence            8999999988865432 2433333332    23334453556666666654432  344444445555567899999999


Q ss_pred             HHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          325 YFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      .|+.|...... ...-.--+.+++...|+.++|..+|+.+..
T Consensus       307 ~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          307 WLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            99998763222 333344566778889999999999999864

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=91.92  E-value=1.6  Score=28.14  Aligned_cols=62  Identities=18%  Similarity=0.217  Sum_probs=36.1

Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016681          214 IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIG  276 (384)
Q Consensus       214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  276 (384)
                      .-+..+-++.+...+..|++.+..+.+++|-+.+++..|.++|+.+..+- .+...+|..+++
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            34455555666666666666666666666666666666666666665442 222334554443

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=91.80  E-value=2.1  Score=29.32  Aligned_cols=62  Identities=13%  Similarity=0.181  Sum_probs=43.8

Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHH
Q 016681          283 EIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLV  345 (384)
Q Consensus       283 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  345 (384)
                      +.-+..+-++.+....+.|++......+++|.+.+++..|.++|+-.+.+ ..+...+|..++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l  129 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI  129 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence            34456666667777777888888888888888888888888888877664 223345566655

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=91.71  E-value=1.7  Score=27.92  Aligned_cols=78  Identities=14%  Similarity=0.023  Sum_probs=41.9

Q ss_pred             ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHH
Q 016681           38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLK  117 (384)
Q Consensus        38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  117 (384)
                      ..++|..+-+.+...+.  ...+-..-+..+...|++++|..+.+...    .||...|-.|-.  .+.|--+++..-+.
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~   93 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN   93 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence            45666666666655422  22222222344566677777766655433    566666655543  34555556655555


Q ss_pred             HHHHcC
Q 016681          118 RMLRKN  123 (384)
Q Consensus       118 ~~~~~~  123 (384)
                      ++..+|
T Consensus        94 ~la~sg   99 (116)
T 2p58_C           94 RLARSQ   99 (116)
T ss_dssp             HHTTCC
T ss_pred             HHHhCC
Confidence            665554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=90.95  E-value=2.7  Score=28.82  Aligned_cols=68  Identities=10%  Similarity=-0.028  Sum_probs=32.8

Q ss_pred             CCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681           55 YPNEATIRTLISALCKGGQL---QTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  122 (384)
                      .|+..+-..+..++.+..+.   .+++.+++.+.+.+.......+-.+.-++.+.|+++.|.+..+.+.+.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            34555544445555544432   345555555554431112334444445555555555555555555543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.91  E-value=6.9  Score=38.53  Aligned_cols=147  Identities=12%  Similarity=0.062  Sum_probs=96.5

Q ss_pred             HHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc----C---------------
Q 016681          203 LLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK----G---------------  263 (384)
Q Consensus       203 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---------------  263 (384)
                      .++..+...+..+-+.++.....     .++..--.+..++...|++++|...|.+....    .               
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~  891 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK  891 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence            34555666666666655443322     23333445667888999999999999764321    0               


Q ss_pred             ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 016681          264 ---FSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL----PAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP  336 (384)
Q Consensus       264 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  336 (384)
                         ...-..-|..++..+.+.+.++.+.++-....+..-..+.    ..|..+.+.+...|++++|...+-.+.....  
T Consensus       892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--  969 (1139)
T 4fhn_B          892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--  969 (1139)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred             ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence               0011234677888888899999998888777654322121    2577888999999999999999988776543  


Q ss_pred             CHhHHHHHHHHHhccCCHHH
Q 016681          337 GVDIYESLVGIHLEKGNKAK  356 (384)
Q Consensus       337 ~~~~~~~l~~~~~~~g~~~~  356 (384)
                      -......|+...+..|..+.
T Consensus       970 r~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          970 KKSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             CHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHhCCChhh
Confidence            35667777777777666544

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=90.67  E-value=1.6  Score=27.97  Aligned_cols=78  Identities=14%  Similarity=-0.053  Sum_probs=43.0

Q ss_pred             ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHH
Q 016681           38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLK  117 (384)
Q Consensus        38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  117 (384)
                      ..++|..+-+.+...+.  ...+-..-+..+...|++++|..+.+...    .||...|-.|-.  .+.|--+++..-+.
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~   92 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA   92 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence            45666666666655432  22222222345566777777766654433    566666655543  35566666666666


Q ss_pred             HHHHcC
Q 016681          118 RMLRKN  123 (384)
Q Consensus       118 ~~~~~~  123 (384)
                      ++..+|
T Consensus        93 ~la~sg   98 (115)
T 2uwj_G           93 GLGGSS   98 (115)
T ss_dssp             HHHTCS
T ss_pred             HHHhCC
Confidence            666655

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=89.71  E-value=3.6  Score=28.25  Aligned_cols=61  Identities=18%  Similarity=0.225  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016681          215 EESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIG  276 (384)
Q Consensus       215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  276 (384)
                      -+..+-++.+...+..|++....+.+++|-+.+|+..|.++|+.+..+- .+...+|..+++
T Consensus        70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq  130 (152)
T 2y69_E           70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence            3445555555566666666666666666666666666666666665442 223334554443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=88.88  E-value=2.4  Score=30.41  Aligned_cols=118  Identities=12%  Similarity=0.090  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCChh
Q 016681          235 AFNEMIRRLCECGNAKQANGMLTLALDKG-FSPNE-------ITYSHLIGGYAKEGEIQEVLKLYYEMEYK--SISPTLP  304 (384)
Q Consensus       235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~  304 (384)
                      ++..-++.+...+.++.|+-+...+.... ..|+.       .++..+.+++...+++.+|...|++..+.  .+.-+..
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            34445666677777777776666544321 12221       24455566667777777777777765332  1111111


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681          305 AYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV  365 (384)
Q Consensus       305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  365 (384)
                      +...+.    .......         .....++.+.--.+..+|.+.|++++|+.+++.+.
T Consensus       102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            111110    0000000         00112233444457788889999999998887653

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.60  E-value=5.9  Score=33.94  Aligned_cols=98  Identities=10%  Similarity=-0.084  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc---CCCCCHHHHH--
Q 016681           60 TIRTLISALCKGGQLQTYVDMLDRIHGK--RCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK---NMIHDTIAYS--  132 (384)
Q Consensus        60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--  132 (384)
                      +...+...+.+.|+++.|.+.|.++...  +...-...+-..++.+...+++..+...+.+....   +..|+.....  
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            4555666667777777777777766543  22333556666667777777777777776665432   2222211100  


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHc
Q 016681          133 LIVYAKVKMRNLESALVVYEEMLKR  157 (384)
Q Consensus       133 ~ll~~~~~~~~~~~a~~~~~~~~~~  157 (384)
                      .-...+...+++..|...|-+....
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhcc
Confidence            0111233456777777777665443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.46  E-value=11  Score=32.28  Aligned_cols=98  Identities=10%  Similarity=-0.140  Sum_probs=65.2

Q ss_pred             HhHHHHHHHHHhhcchHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHHHHH--
Q 016681           94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNM--IHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG-FSANSFVYTT--  168 (384)
Q Consensus        94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~--  168 (384)
                      .+...+...|.+.|+++.|.+.+.++...-.  ..-...+-.+++.+...+++..+...+.++...- -.++....+.  
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            4667788888999999999999998887432  2234566777888888899999988888875431 1112222211  


Q ss_pred             --HHHHHHhcCCHHHHHHHHHHHHH
Q 016681          169 --FIGAYCEYGKIEEANCLMQEMEN  191 (384)
Q Consensus       169 --l~~~~~~~~~~~~a~~~~~~~~~  191 (384)
                        -...+...+++..|...|-+...
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhc
Confidence              11223456788888887776654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=85.33  E-value=8.7  Score=30.18  Aligned_cols=56  Identities=9%  Similarity=0.112  Sum_probs=40.9

Q ss_pred             HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681           31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK   87 (384)
Q Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   87 (384)
                      ..+.+.|++++++.....-++..+ -|...-..++..+|-.|+++.|..-++...+.
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            445677788888877777776643 36777777788888888888888777777665

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=84.97  E-value=4  Score=32.04  Aligned_cols=116  Identities=14%  Similarity=0.083  Sum_probs=71.7

Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCC
Q 016681           66 SALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI--HDTIAYSLIVYAKVKMRN  143 (384)
Q Consensus        66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~  143 (384)
                      ..+.+.|+++++++....-.+.. |.|...-..++..++-.|++++|.+-++...+....  |....|..+|++      
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------   77 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------   77 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence            34567888899988888877776 778888888899999999999998888888775422  122234434332      


Q ss_pred             hHHHHHHHHHHHHcCCCC-----ChHHHHHHHHHH--HhcCCHHHHHHHHHHHHHc
Q 016681          144 LESALVVYEEMLKRGFSA-----NSFVYTTFIGAY--CEYGKIEEANCLMQEMENA  192 (384)
Q Consensus       144 ~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~  192 (384)
                          +..=.+...-+-.|     ...-...++.+.  ...|+.++|..+-..+.+.
T Consensus        78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~  129 (273)
T 1zbp_A           78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  129 (273)
T ss_dssp             ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence                22222222221111     222333444443  3458888888887777553

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=84.23  E-value=9.5  Score=27.39  Aligned_cols=23  Identities=9%  Similarity=0.034  Sum_probs=12.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHH
Q 016681          132 SLIVYAKVKMRNLESALVVYEEM  154 (384)
Q Consensus       132 ~~ll~~~~~~~~~~~a~~~~~~~  154 (384)
                      ..+.+++...+++..|...|++.
T Consensus        67 ~~ladalf~~~eyrrA~~~y~qA   89 (167)
T 3ffl_A           67 VYHADSLFHDKEYRNAVSKYTMA   89 (167)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHH
Confidence            33444555555555555555554

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=82.98  E-value=11  Score=29.51  Aligned_cols=12  Identities=17%  Similarity=0.271  Sum_probs=5.3

Q ss_pred             HHHHhCCCCCCc
Q 016681          362 EEMVSEGLKPST  373 (384)
Q Consensus       362 ~~~~~~~~~p~~  373 (384)
                      +-+.+.|..|+.
T Consensus       270 ~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          270 ELLCKRGASTDC  281 (285)
T ss_dssp             HHHHHHSSCSCC
T ss_pred             HHHHHcCCCCCc
Confidence            333444554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 11/195 (5%)

Query: 162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYC 221
               Y        E    + A        +     +      L     +   I+ ++   
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTY 260

Query: 222 EQMMSRKLLPSCS-AFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAK 280
            + +  +L P    A+  +   L E G+  +A      AL      +  + ++L     +
Sbjct: 261 RRAI--ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKRE 317

Query: 281 EGEIQEVLKLYYEMEYKSISPTLP-AYTSLISSLCQCGKLEEADKYFKIMKSHSLVPG-V 338
           +G I+E ++LY +     + P    A+++L S L Q GKL+EA  ++K  ++  + P   
Sbjct: 318 QGNIEEAVRLYRKA--LEVFPEFAAAHSNLASVLQQQGKLQEALMHYK--EAIRISPTFA 373

Query: 339 DIYESLVGIHLEKGN 353
           D Y ++     E  +
Sbjct: 374 DAYSNMGNTLKEMQD 388

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.95
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.74
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.73
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.45
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.45
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.45
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.42
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.4
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.37
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.34
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.32
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.32
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.27
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.94
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.92
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.86
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.85
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.71
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.71
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.7
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.68
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.64
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.6
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.59
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.52
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.51
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.48
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.39
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.36
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.35
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.3
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.24
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.24
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.17
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.16
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.15
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.12
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.11
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.08
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.07
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.07
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.06
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.05
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.95
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.95
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.92
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.87
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.45
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.44
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.25
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.25
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.19
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.85
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.56
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.24
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.23
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	93.24
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	93.16
d1bpoa1	157	Clathrin heavy-chain linker domain {Rat (Rattus no	92.15
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	91.2
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	91.05

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.4e-23  Score=176.85  Aligned_cols=360  Identities=13%  Similarity=0.061  Sum_probs=291.1

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML   81 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   81 (384)
                      |++++|++.++.+.+.. |-++.++..+..++.+.|++++|...|+...+..+ -+..++..+...+.+.|++++|+..+
T Consensus        13 G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~~~A~~~~   90 (388)
T d1w3ba_          13 GDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEAIEHY   90 (388)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcccccccccc
Confidence            88999999999998774 34788899999999999999999999999988743 36788999999999999999999999


Q ss_pred             HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681           82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA  161 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  161 (384)
                      ....... +.+..............+....+............. ...............+....+...+........ .
T Consensus        91 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  167 (388)
T d1w3ba_          91 RHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-N  167 (388)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-T
T ss_pred             ccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhccCc-c
Confidence            9988776 555666666666666666666666666666555433 444555566667777888888888877776533 3


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681          162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR  241 (384)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  241 (384)
                      +...+..+...+...|++++|...++...+.. +-+...+..+...+...|++++|...+......... +...+..+..
T Consensus       168 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~  245 (388)
T d1w3ba_         168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLAC  245 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHH
Confidence            56777888888999999999999999887754 345567888888899999999999999988876544 6677888888


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 016681          242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEE  321 (384)
Q Consensus       242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  321 (384)
                      .+.+.|++++|...++.+.+..+. +...+..+...+...|++++|.+.++...... +.+...+..+...+...|++++
T Consensus       246 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  323 (388)
T d1w3ba_         246 VYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEE  323 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHH
Confidence            999999999999999998886443 67888889999999999999999999887764 5677788888899999999999


Q ss_pred             HHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 016681          322 ADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPST  373 (384)
Q Consensus       322 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~  373 (384)
                      |...|++..+..+. +..++..+..++...|++++|...|++.++.  .|+.
T Consensus       324 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~  372 (388)
T d1w3ba_         324 AVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTF  372 (388)
T ss_dssp             HHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTC
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence            99999998886544 6778888999999999999999999998864  4653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-21  Score=165.08  Aligned_cols=343  Identities=16%  Similarity=0.077  Sum_probs=285.6

Q ss_pred             CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      +|++++|++.|+...+.. |-+..+|..+..++.+.|++++|+..+....+... .+..............+....+...
T Consensus        46 ~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  123 (388)
T d1w3ba_          46 CRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQA  123 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccccccccccccc-ccccccccccccccccccccccccc
Confidence            589999999999998875 44788999999999999999999999999988754 3555555566666666666666666


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS  160 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  160 (384)
                      ........ .................+....+...+......... +...+..+...+...|+++.|...+++..+....
T Consensus       124 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  201 (388)
T d1w3ba_         124 YVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN  201 (388)
T ss_dssp             HHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             cccccccc-cccccccccccccccccchhhhhHHHHHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc
Confidence            66655544 445556666667777888888888888888776533 6778888889999999999999999999886433


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 016681          161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI  240 (384)
Q Consensus       161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  240 (384)
                       +...+..+...+...|++++|...++.....+ +.+...+..+...+.+.|++++|...+++..+..+. +..++..+.
T Consensus       202 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~  278 (388)
T d1w3ba_         202 -FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLA  278 (388)
T ss_dssp             -CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHH
T ss_pred             -cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence             67788899999999999999999999998866 455677888889999999999999999999887654 678899999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 016681          241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLE  320 (384)
Q Consensus       241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  320 (384)
                      ..+...|++++|...++...... +.+...+..+...+...|++++|...|++..+.. +-+..++..+..++.+.|+++
T Consensus       279 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~  356 (388)
T d1w3ba_         279 NALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQ  356 (388)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999988764 4478889999999999999999999999998764 345677888999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCC
Q 016681          321 EADKYFKIMKSHSLVPGVDIYESLVGIHLEKGN  353 (384)
Q Consensus       321 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  353 (384)
                      +|...|++..+..+. +...|..+..+|.+.||
T Consensus       357 ~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         357 EALMHYKEAIRISPT-FADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence            999999999986544 67889999999888775

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.7e-15  Score=120.44  Aligned_cols=270  Identities=11%  Similarity=-0.053  Sum_probs=167.0

Q ss_pred             HHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 016681           64 LISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRN  143 (384)
Q Consensus        64 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  143 (384)
                      ....+.+.|++++|+..|+++.+.. |.+..+|..+..++...|++++|...+.+..+.... +...+..+...+...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence            3445566677777777777766665 445666666666777777777777777766665432 45566666666666677


Q ss_pred             hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHH
Q 016681          144 LESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQ  223 (384)
Q Consensus       144 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  223 (384)
                      +++|.+.++.......  +.............                   ..+.......+..+...+...++...+.+
T Consensus       103 ~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (323)
T d1fcha_         103 QRQACEILRDWLRYTP--AYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA  161 (323)
T ss_dssp             HHHHHHHHHHHHHTST--TTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhcc--chHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence            7777766666655421  11100000000000                   00000011112233344566777777777


Q ss_pred             HHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 016681          224 MMSRKL-LPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT  302 (384)
Q Consensus       224 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  302 (384)
                      ..+..+ .++..++..+...+...|++++|...++......+. +...|..+...+...|++++|.+.|++..+.. +-+
T Consensus       162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~  239 (323)
T d1fcha_         162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGY  239 (323)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hcc
Confidence            665443 234567777888888888898998888888776433 67788888888888899999999988887764 335


Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHhhCC----------CCCCHhHHHHHHHHHhccCCHHHHH
Q 016681          303 LPAYTSLISSLCQCGKLEEADKYFKIMKSHS----------LVPGVDIYESLVGIHLEKGNKAKAL  358 (384)
Q Consensus       303 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~a~  358 (384)
                      ..++..+..+|.+.|++++|+..|++.++..          .......|..+-.++...|+.+.+.
T Consensus       240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            6678888888888999999988888876521          1112234556666666666655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.9e-15  Score=120.70  Aligned_cols=244  Identities=10%  Similarity=-0.039  Sum_probs=173.2

Q ss_pred             HHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc
Q 016681           28 TLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE  107 (384)
Q Consensus        28 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  107 (384)
                      .....+.+.|++++|+..|+.+++..+. +..+|..+..++...|++++|...|++..+.. +.+...+..+...+...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            4566788999999999999999986443 68899999999999999999999999998876 667889999999999999


Q ss_pred             chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 016681          108 RIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQ  187 (384)
Q Consensus       108 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  187 (384)
                      ++++|.+.+++....... ....+....... .                   ..+.......+..+...+.+.+|.+.+.
T Consensus       102 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPA-YAHLVTPAEEGA-G-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL  160 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTT-TGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccc-hHHHHHhhhhhh-h-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence            999999999998875422 111100000000 0                   0000011111222334455666777776


Q ss_pred             HHHHcC-CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 016681          188 EMENAG-LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP  266 (384)
Q Consensus       188 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  266 (384)
                      +..+.. -.++...+..+...+...|++++|...+++.....+. +..+|..+..++...|++++|...++.+.+..+. 
T Consensus       161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-  238 (323)
T d1fcha_         161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-  238 (323)
T ss_dssp             HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence            665532 1234456667777777888888888888887766544 5677777888888888888888888888775432 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016681          267 NEITYSHLIGGYAKEGEIQEVLKLYYEMEY  296 (384)
Q Consensus       267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  296 (384)
                      +...|..+..+|.+.|++++|...|++..+
T Consensus       239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         239 YIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            567788888888888888888888887765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=7.8e-11  Score=95.53  Aligned_cols=187  Identities=10%  Similarity=0.048  Sum_probs=114.6

Q ss_pred             hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016681           74 LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEE  153 (384)
Q Consensus        74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  153 (384)
                      .++|..+|++..+...+.+...|...+......|+++.|..+|++++..........|...+..+.+.|+.+.|.++|+.
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            45666677776654434455566666666667777777777777766654333344566666666677777777777777


Q ss_pred             HHHcCCCCChHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCC-CC
Q 016681          154 MLKRGFSANSFVYTTFIGA-YCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKL-LP  231 (384)
Q Consensus       154 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~  231 (384)
                      +.+.+.. +...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+++.|..+|++...... .|
T Consensus       160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            6665332 33334333332 233566777777777766642 34455666677777777777777777777666532 22


Q ss_pred             --ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681          232 --SCSAFNEMIRRLCECGNAKQANGMLTLALDK  262 (384)
Q Consensus       232 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  262 (384)
                        ....|...+..-...|+.+.+..+++++.+.
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence              2345666666666677777777777766553

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.3e-11  Score=95.14  Aligned_cols=129  Identities=10%  Similarity=0.114  Sum_probs=59.1

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681           26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGG-QLQTYVDMLDRIHGKRCSPMVIVNTSLILRII  104 (384)
Q Consensus        26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  104 (384)
                      |+.+...+.+.+.+++|+++++.+++.++. +...|+....++...| ++++|+..++...+.+ +-+..+|+.+...+.
T Consensus        46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          46 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHH
Confidence            333444444444455555555555443221 3334444444444433 2445555554444443 334444444444444


Q ss_pred             hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681          105 QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR  157 (384)
Q Consensus       105 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  157 (384)
                      +.|++++|++.++++.+.... +..+|..+...+.+.|++++|.+.++++.+.
T Consensus       124 ~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            455555555555544444322 4444444444444444444444444444444

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.9e-10  Score=93.28  Aligned_cols=249  Identities=11%  Similarity=0.049  Sum_probs=187.4

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc-chHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016681           58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE-RIEEGMVLLKRMLRKNMIHDTIAYSLIVY  136 (384)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  136 (384)
                      ...++.+...+.+.+.+++|++.++++.+.+ |-+..+|+....++...| ++++|+..++...+.... +..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence            3466667777888899999999999999887 778889999998888876 589999999999887655 7889999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc---
Q 016681          137 AKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKR---  213 (384)
Q Consensus       137 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  213 (384)
                      .+.+.|++++|.+.++++.+.... +...|..+...+...|++++|++.++.+.+.+ +.+...|+.+...+.+.+.   
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence            999999999999999999987444 78899999999999999999999999999876 3456677766666655543   


Q ss_pred             ---hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhc--------
Q 016681          214 ---IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP-NEITYSHLIGGYAKE--------  281 (384)
Q Consensus       214 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--------  281 (384)
                         +++|+..+....+..+. +...|..+...+. ....+++...++...+....+ +...+..++..|...        
T Consensus       199 ~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~  276 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK  276 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             hhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence               67888999888887654 6777777766544 444677888888776654332 455566666666432        


Q ss_pred             -CCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHH
Q 016681          282 -GEIQEVLKLYYEMEYKSISPTL-PAYTSLISSL  313 (384)
Q Consensus       282 -~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~  313 (384)
                       ..+++|..++..+... +.|-. .-|+-+.+.+
T Consensus       277 ~~~~~ka~~l~~~l~~~-~DpiR~~yw~~~~~~l  309 (315)
T d2h6fa1         277 EDILNKALELCEILAKE-KDTIRKEYWRYIGRSL  309 (315)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence             3367788888776544 23322 3355544443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=2e-10  Score=93.12  Aligned_cols=151  Identities=9%  Similarity=0.065  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016681          109 IEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQE  188 (384)
Q Consensus       109 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  188 (384)
                      .++|..+|++.++...+.+...|...+....+.|+.+.|..+|+.+.+.........|...+....+.|+++.|.++|+.
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            34555555555543333334444444455555555555555555555432222223444555555555555555555555


Q ss_pred             HHHcCCCCChhhHHHHHHH-HHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681          189 MENAGLKPYDETFNLLIEG-CAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALD  261 (384)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  261 (384)
                      +.+.. +.+...|...... +...|+.+.|..+|+.+....+. +...|...+..+.+.|+++.|..+|++..+
T Consensus       160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~  231 (308)
T d2onda1         160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            44432 1122222222111 11223444444444444443211 333444444444444444444444444433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=6.8e-10  Score=91.77  Aligned_cols=264  Identities=9%  Similarity=0.041  Sum_probs=124.8

Q ss_pred             HHHccCChHHHHHHHHHHHhCCCCCc-----HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC-C----CHHHHHHHHH
Q 016681           67 ALCKGGQLQTYVDMLDRIHGKRCSPM-----VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI-H----DTIAYSLIVY  136 (384)
Q Consensus        67 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~ll~  136 (384)
                      .+...|++++|++++++..... +.+     ...+..+...+...|++++|...+++..+.... +    ....+..+..
T Consensus        21 ~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          21 VAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            3444455555555555444332 111     123344444555555555555555544432100 0    1122333444


Q ss_pred             HHHhcCChHHHHHHHHHHHHc----CCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCChhhHHHHH
Q 016681          137 AKVKMRNLESALVVYEEMLKR----GFSA---NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL----KPYDETFNLLI  205 (384)
Q Consensus       137 ~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~  205 (384)
                      .+...|++..+...+......    +...   ....+..+...+...|+++.+...+........    ......+....
T Consensus       100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (366)
T d1hz4a_         100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  179 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            455555555555555544321    1111   112333444555566666666666655544221    11122333334


Q ss_pred             HHHHhcCchHHHHHHHHHHHhC--CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CHHHHHHHHH
Q 016681          206 EGCAKAKRIEESLSYCEQMMSR--KLLPS----CSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP---NEITYSHLIG  276 (384)
Q Consensus       206 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~  276 (384)
                      ..+...++...+...+.+....  .....    ...+......+...|+++.|...+....+.....   ....+..+..
T Consensus       180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~  259 (366)
T d1hz4a_         180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  259 (366)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            4455555555555555443321  01101    1233444455666666766666666655432221   1233445566


Q ss_pred             HHHhcCCHHHHHHHHHHHHhc----CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681          277 GYAKEGEIQEVLKLYYEMEYK----SISPT-LPAYTSLISSLCQCGKLEEADKYFKIMKS  331 (384)
Q Consensus       277 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  331 (384)
                      .+...|++++|...+++....    +..|+ ..++..+...+.+.|++++|.+.+++..+
T Consensus       260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            666677777777776665421    22222 23455566667777777777777766543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=7.8e-10  Score=91.39  Aligned_cols=273  Identities=10%  Similarity=-0.012  Sum_probs=195.4

Q ss_pred             HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----C-CChH
Q 016681           94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHD----TIAYSLIVYAKVKMRNLESALVVYEEMLKRGF----S-ANSF  164 (384)
Q Consensus        94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~  164 (384)
                      .........+...|++++|++++++..+.....+    ..++..+...+...|++++|...+++..+...    . ....
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            3444456677899999999999999987643322    24567778889999999999999998865311    1 1134


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC---hhhHHHHHHHHHhcCchHHHHHHHHHHHhCCC----CCCh
Q 016681          165 VYTTFIGAYCEYGKIEEANCLMQEMENA----GLKPY---DETFNLLIEGCAKAKRIEESLSYCEQMMSRKL----LPSC  233 (384)
Q Consensus       165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~  233 (384)
                      .+..+...+...|++..+...+......    .....   ...+..+...+...|+++.+...+........    ....
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  172 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence            4566778889999999999998876542    21111   13455666788899999999999988766432    2233


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---hh
Q 016681          234 SAFNEMIRRLCECGNAKQANGMLTLALDKG--FSP----NEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT---LP  304 (384)
Q Consensus       234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~  304 (384)
                      ..+......+...++...+...+.......  ...    ....+..+...+...|++++|...+....+.....+   ..
T Consensus       173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  252 (366)
T d1hz4a_         173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  252 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence            455666677888899999988887665421  111    123456666778889999999999988765532222   23


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHhh----CCCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          305 AYTSLISSLCQCGKLEEADKYFKIMKS----HSLVPG-VDIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                      .+..+...+...|++++|...+++...    .+..|+ ...+..+...|...|++++|.+.+++.++
T Consensus       253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            455677889999999999999998764    233333 45677888999999999999999998765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=1.5e-11  Score=101.18  Aligned_cols=265  Identities=11%  Similarity=-0.022  Sum_probs=153.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCcHHhHHHHHHH----------HHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 016681           73 QLQTYVDMLDRIHGKRCSPMVIVNTSLILR----------IIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR  142 (384)
Q Consensus        73 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  142 (384)
                      ..++|+++++++...+ |-+...|+..-..          +...|++++|+.+++...+..+. +...|..+..++...+
T Consensus        44 ~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~  121 (334)
T d1dcea1          44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP  121 (334)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred             ccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhc
Confidence            3456666666666544 3334444332222          22344566777777777765433 5556666665555554


Q ss_pred             --ChHHHHHHHHHHHHcCCCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHH
Q 016681          143 --NLESALVVYEEMLKRGFSANSFVYT-TFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLS  219 (384)
Q Consensus       143 --~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  219 (384)
                        ++++|...+..+.+.... +...+. .....+...+.+++|+..++.+.+.+ +-+...|..+...+.+.|++++|..
T Consensus       122 ~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHH
Confidence              367777777777665332 344433 33455666777777777777776654 3445667777777777777666544


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 016681          220 YCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSI  299 (384)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  299 (384)
                      .+.......    + ........+...+..+++...+.......+ ++...+..+...+...++.++|...+.+..+.+ 
T Consensus       200 ~~~~~~~~~----~-~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-  272 (334)
T d1dcea1         200 QGRLPENVL----L-KELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPEN-  272 (334)
T ss_dssp             CCSSCHHHH----H-HHHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred             HHHHhHHhH----H-HHHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-
Confidence            333222210    0 011222334455666666666666665532 344455556666666777777777777776554 


Q ss_pred             CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHh
Q 016681          300 SPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHL  349 (384)
Q Consensus       300 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  349 (384)
                      +.+..++..+...+...|++++|.+.++++.+.++. +...|..+...+.
T Consensus       273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~~  321 (334)
T d1dcea1         273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHh
Confidence            234456666777777888888888888887775322 3445555544443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=1.7e-11  Score=100.86  Aligned_cols=276  Identities=9%  Similarity=-0.026  Sum_probs=194.0

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH---H-------HccCChHHHHHHHHHHHhCCCCCcHHh
Q 016681           26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISA---L-------CKGGQLQTYVDMLDRIHGKRCSPMVIV   95 (384)
Q Consensus        26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~   95 (384)
                      ...++.........++|+++++..++..+. +...|+..-..   +       ...|++++|+.+++.+.+.+ +.+...
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~  109 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT  109 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence            333444333444458999999999886432 34445433322   2       22345788999999988876 667888


Q ss_pred             HHHHHHHHHhhc--chHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 016681           96 NTSLILRIIQEE--RIEEGMVLLKRMLRKNMIHDTIAYS-LIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGA  172 (384)
Q Consensus        96 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  172 (384)
                      |..+..++...+  ++++|...+.++...... +...+. .....+...+.++.|...++.+.+..+. +...|..+..+
T Consensus       110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~  187 (334)
T d1dcea1         110 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL  187 (334)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence            888877777665  478999999999887543 555554 4446677789999999999998887544 78889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 016681          173 YCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQA  252 (384)
Q Consensus       173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  252 (384)
                      +.+.|++++|...++...+..  |+   .......+...+..+++...+.......+. +...+..+...+...++..+|
T Consensus       188 ~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a  261 (334)
T d1dcea1         188 LPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELES  261 (334)
T ss_dssp             HHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHH
Confidence            999999888766655443321  21   122333455567777888888887776543 555666677778888999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHH
Q 016681          253 NGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL-PAYTSLISSLC  314 (384)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~  314 (384)
                      ...+....+..+. +...+..+...+...|+.++|.+.++++.+..  |+. ..|..|...+.
T Consensus       262 ~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~~  321 (334)
T d1dcea1         262 CKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHHh
Confidence            9999888876432 56778888899999999999999999998864  543 34454544443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.3e-10  Score=91.80  Aligned_cols=118  Identities=8%  Similarity=-0.045  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHHhcCC-CC--chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681            4 FEVAFDVCRYLEQRGF-SL--SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM   80 (384)
Q Consensus         4 ~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   80 (384)
                      .+.|+.-++++..... .+  ...+|..+..+|.+.|++++|++.|++.++..+ -+..+|..+..++.+.|++++|+..
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhh
Confidence            3445555555544311 11  223444555566666666666666666665432 2455666666666666666666666


Q ss_pred             HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 016681           81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN  123 (384)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  123 (384)
                      |+++.+.. +.+..++..+..++...|++++|.+.+++..+..
T Consensus        94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~  135 (259)
T d1xnfa_          94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD  135 (259)
T ss_dssp             HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            66666554 3445555566666666666666666666665543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=4e-10  Score=88.81  Aligned_cols=150  Identities=11%  Similarity=-0.040  Sum_probs=88.7

Q ss_pred             hhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHH
Q 016681           39 NDLVWRIYQHMLENIRYP---NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVL  115 (384)
Q Consensus        39 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  115 (384)
                      .+.++.-+++........   ...++..+...|.+.|++++|++.|++..+.. |.++.+|+.+..++.+.|++++|++.
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            344444555555432111   12355556667777777777777777777665 55667777777777777777777777


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681          116 LKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMEN  191 (384)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  191 (384)
                      |+++.+.... +..++..+..++...|++++|.+.|+...+.... +......+...+.+.+..+.+..+......
T Consensus        94 ~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
T d1xnfa_          94 FDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  167 (259)
T ss_dssp             HHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            7777765433 4556666667777777777777777777665322 333333333444444444444444444433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=5e-08  Score=77.84  Aligned_cols=163  Identities=8%  Similarity=-0.106  Sum_probs=80.1

Q ss_pred             HHHHHccCChHHHHHHHHHHHhC----CCCC-cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC-----CCHHHHHHH
Q 016681           65 ISALCKGGQLQTYVDMLDRIHGK----RCSP-MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI-----HDTIAYSLI  134 (384)
Q Consensus        65 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l  134 (384)
                      ...|...+++++|.+.|.+....    +-++ -..+|..+..+|.+.|++++|.+.+++.......     ....++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            44566677777777777765432    1111 1345666666666777777777666655432100     012333344


Q ss_pred             HHHHH-hcCChHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hhHH
Q 016681          135 VYAKV-KMRNLESALVVYEEMLKR----GFSA-NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYD------ETFN  202 (384)
Q Consensus       135 l~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~  202 (384)
                      ...+. ..|++++|.+.+++..+.    +..+ -..++..+...+...|++++|...|+++.........      ..+.
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            44443 246666666666655432    1110 1233455556666666666666666665543211110      1112


Q ss_pred             HHHHHHHhcCchHHHHHHHHHHHhC
Q 016681          203 LLIEGCAKAKRIEESLSYCEQMMSR  227 (384)
Q Consensus       203 ~l~~~~~~~~~~~~a~~~~~~~~~~  227 (384)
                      ..+..+...++++.|...+++..+.
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh
Confidence            2223344455555555555555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=9.2e-08  Score=76.28  Aligned_cols=161  Identities=9%  Similarity=-0.052  Sum_probs=74.9

Q ss_pred             HHHhcCChHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCChhhHHHHHH
Q 016681          137 AKVKMRNLESALVVYEEMLKR----GFSA-NSFVYTTFIGAYCEYGKIEEANCLMQEMENA----GL-KPYDETFNLLIE  206 (384)
Q Consensus       137 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~  206 (384)
                      .|...+++++|.+.|.+..+.    +..+ -..+|..+..+|.+.|++++|.+.++...+.    +. .....++..+..
T Consensus        46 ~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~  125 (290)
T d1qqea_          46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (290)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHH
Confidence            444555555555555544332    1100 1234555555666666666666665544331    10 001123333344


Q ss_pred             HHH-hcCchHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH------HHHHHH
Q 016681          207 GCA-KAKRIEESLSYCEQMMSR----KLLP-SCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNE------ITYSHL  274 (384)
Q Consensus       207 ~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l  274 (384)
                      .|. ..|++++|...+.+..+.    +..+ ...++..+...+...|++++|...++.+.........      ..+...
T Consensus       126 ~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (290)
T d1qqea_         126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK  205 (290)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHH
Confidence            442 246666666666554321    1000 1233455566666666666666666665543221110      112233


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhc
Q 016681          275 IGGYAKEGEIQEVLKLYYEMEYK  297 (384)
Q Consensus       275 ~~~~~~~~~~~~a~~~~~~~~~~  297 (384)
                      +..+...++++.|...+++..+.
T Consensus       206 ~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         206 GLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHh
Confidence            33444566666666666666544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.5e-07  Score=68.48  Aligned_cols=121  Identities=10%  Similarity=0.025  Sum_probs=64.7

Q ss_pred             HHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 016681           68 LCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESA  147 (384)
Q Consensus        68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  147 (384)
                      +...|+++.|++.|+++.    +|+..+|..+..++...|++++|++.|++.++.+.. +...|..+..++.+.|++++|
T Consensus        15 ~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          15 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHH
Confidence            344555555555554431    344455555555555555555555555555554432 445555555555555555555


Q ss_pred             HHHHHHHHHcCC------------C--C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681          148 LVVYEEMLKRGF------------S--A-NSFVYTTFIGAYCEYGKIEEANCLMQEMENAG  193 (384)
Q Consensus       148 ~~~~~~~~~~~~------------~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  193 (384)
                      .+.|++......            .  + ...++..+..++.+.|++++|.+.+....+..
T Consensus        90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            555555543210            0  0 02334455666777777777777777666543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.8e-07  Score=69.24  Aligned_cols=127  Identities=8%  Similarity=-0.057  Sum_probs=103.4

Q ss_pred             HHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcch
Q 016681           30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERI  109 (384)
Q Consensus        30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  109 (384)
                      ...+...|+++.|++.|+.+    ..|+..+|..+...+...|++++|++.|++..+.+ +.+...|..+..++.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence            45567889999999998764    34688889899999999999999999999999887 77788999999999999999


Q ss_pred             HHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681          110 EEGMVLLKRMLRKNMI--------------H-DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA  161 (384)
Q Consensus       110 ~~a~~~~~~~~~~~~~--------------~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  161 (384)
                      ++|++.|++.......              + ...++..+..++.+.|++++|.+.+....+....+
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            9999999988753111              1 12455667778999999999999999888764443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.8e-07  Score=62.05  Aligned_cols=92  Identities=20%  Similarity=0.177  Sum_probs=57.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 016681          240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKL  319 (384)
Q Consensus       240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  319 (384)
                      ...+...|++++|...|+.+++..+. +...|..+..++...|++++|+..+.+..+.+ +.+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            34455666666666666666655433 55666666666666666666666666666554 34555666666666666666


Q ss_pred             HHHHHHHHHHhhCC
Q 016681          320 EEADKYFKIMKSHS  333 (384)
Q Consensus       320 ~~a~~~~~~~~~~~  333 (384)
                      ++|+..|++..+..
T Consensus        88 ~~A~~~~~~a~~~~  101 (117)
T d1elwa_          88 EEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhC
Confidence            66666666666644

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.6e-07  Score=62.23  Aligned_cols=90  Identities=12%  Similarity=-0.005  Sum_probs=43.4

Q ss_pred             HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681           31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE  110 (384)
Q Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  110 (384)
                      ..+.+.|++++|+..|+..++..+ .+...|..+..++...|++++|+..+++..+.+ +.+...|..+..++...|+++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence            344444555555555555544422 134444444555555555555555555544443 344444444555555555555


Q ss_pred             HHHHHHHHHHHc
Q 016681          111 EGMVLLKRMLRK  122 (384)
Q Consensus       111 ~a~~~~~~~~~~  122 (384)
                      +|+..|++..+.
T Consensus        89 ~A~~~~~~a~~~  100 (117)
T d1elwa_          89 EAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            555555554443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.2e-07  Score=64.60  Aligned_cols=92  Identities=7%  Similarity=-0.054  Sum_probs=54.0

Q ss_pred             HHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcch
Q 016681           30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERI  109 (384)
Q Consensus        30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  109 (384)
                      ...+.+.|++++|+..|++.++... -+...|..+...+...|++++|.+.|++..+.+ +.+..+|..+..++...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence            3445566666666666666665533 245556666666666666666666666665554 44555666666666666666


Q ss_pred             HHHHHHHHHHHHcC
Q 016681          110 EEGMVLLKRMLRKN  123 (384)
Q Consensus       110 ~~a~~~~~~~~~~~  123 (384)
                      ++|...+++.....
T Consensus        95 ~eA~~~~~~a~~~~  108 (159)
T d1a17a_          95 RAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcC
Confidence            66666666665543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.7e-07  Score=64.36  Aligned_cols=91  Identities=12%  Similarity=0.089  Sum_probs=51.4

Q ss_pred             HHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 016681           65 ISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNL  144 (384)
Q Consensus        65 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  144 (384)
                      ...+.+.|++++|+..|++..+.+ +.+...|..+..++...|++++|.+.|++.++.... +..+|..+..++...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence            344455566666666666655554 445555555555666666666666666655554322 445555555555566666


Q ss_pred             HHHHHHHHHHHHc
Q 016681          145 ESALVVYEEMLKR  157 (384)
Q Consensus       145 ~~a~~~~~~~~~~  157 (384)
                      ++|...+++....
T Consensus        95 ~eA~~~~~~a~~~  107 (159)
T d1a17a_          95 RAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            6666655555554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=2e-07  Score=69.82  Aligned_cols=100  Identities=16%  Similarity=0.040  Sum_probs=84.4

Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 016681          231 PSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLI  310 (384)
Q Consensus       231 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  310 (384)
                      |+...+......+.+.|++++|...|..+.+..+. +...|..+..+|.+.|++++|...|++..+.. +-+..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            56777777888899999999999999998887543 78889999999999999999999999988764 33567788899


Q ss_pred             HHHHhcCChHHHHHHHHHHhhC
Q 016681          311 SSLCQCGKLEEADKYFKIMKSH  332 (384)
Q Consensus       311 ~~~~~~g~~~~a~~~~~~~~~~  332 (384)
                      .+|...|++++|...|+++.+.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999988763

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.68  E-value=3.3e-05  Score=60.12  Aligned_cols=221  Identities=11%  Similarity=-0.016  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHH
Q 016681           95 VNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK----MRNLESALVVYEEMLKRGFSANSFVYTTFI  170 (384)
Q Consensus        95 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  170 (384)
                      .+..|...+.+.+++++|++.|++..+.|   +...+..|...|..    ..+...|...+......+   +......+.
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~   77 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence            34444444555555555555555555544   33444444444443    335555555555554443   122222222


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 016681          171 GAYCE----YGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAK----AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRR  242 (384)
Q Consensus       171 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  242 (384)
                      ..+..    ..+.+.|...++...+.|. +  .....+...+..    ......+...+......+   +...+..+...
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~-~--~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~  151 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKY-A--EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL  151 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTC-H--HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhh-h--hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhh
Confidence            22222    2345555555555555442 1  111111111111    122334444444433322   33344444444


Q ss_pred             HHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 016681          243 LCE----CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAK----EGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLC  314 (384)
Q Consensus       243 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  314 (384)
                      +..    ..+...+...++...+.|   +......+...|..    ..+.++|...|.+..+.|   ++..+..|...|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~  225 (265)
T d1ouva_         152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY  225 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence            443    233444444444444432   33333334333332    345556666666555554   2333344444444


Q ss_pred             h----cCChHHHHHHHHHHhhCC
Q 016681          315 Q----CGKLEEADKYFKIMKSHS  333 (384)
Q Consensus       315 ~----~g~~~~a~~~~~~~~~~~  333 (384)
                      +    ..+.++|.++|++..+.|
T Consensus       226 ~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         226 NGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             cCCCCccCHHHHHHHHHHHHHCc
Confidence            3    224555666655555544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=3.8e-07  Score=68.21  Aligned_cols=99  Identities=11%  Similarity=-0.059  Sum_probs=56.0

Q ss_pred             CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 016681           21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLI  100 (384)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  100 (384)
                      |++..+......+.+.|++++|+..|+..++..+ .+...|..+..+|.+.|++++|+..|++..+.. |-+..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            4445555555556666666666666666555432 245555555666666666666666666655543 33455555555


Q ss_pred             HHHHhhcchHHHHHHHHHHHH
Q 016681          101 LRIIQEERIEEGMVLLKRMLR  121 (384)
Q Consensus       101 ~~~~~~~~~~~a~~~~~~~~~  121 (384)
                      .++...|++++|+..|++...
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            666666666666665555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.60  E-value=4.1e-07  Score=60.62  Aligned_cols=90  Identities=10%  Similarity=-0.003  Sum_probs=65.1

Q ss_pred             HHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc
Q 016681           28 TLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE  107 (384)
Q Consensus        28 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  107 (384)
                      .....+.+.|++++|...|++.++..+. +...|..+..++.+.|++++|+..|++..+.+ |.+..+|..+...+...|
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence            3455666777777777777777776432 56777777777777777777777777777665 556777777777777777


Q ss_pred             chHHHHHHHHHH
Q 016681          108 RIEEGMVLLKRM  119 (384)
Q Consensus       108 ~~~~a~~~~~~~  119 (384)
                      ++++|++.+++.
T Consensus        99 ~~~~A~~~l~~~  110 (112)
T d1hxia_          99 NANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            777777777765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.59  E-value=6.1e-05  Score=58.53  Aligned_cols=230  Identities=12%  Similarity=0.048  Sum_probs=163.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 016681          127 DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCE----YGKIEEANCLMQEMENAGLKPYDETFN  202 (384)
Q Consensus       127 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  202 (384)
                      |+..+..+...+.+.+++++|.+.|++..+.|   +...+..|...|..    ..+...|...+......+. |  ....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~--~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-S--NGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-H--HHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-c--chhh
Confidence            34566777778888999999999999998876   55566667777776    5688999999999887663 3  3333


Q ss_pred             HHHHHHHh----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 016681          203 LLIEGCAK----AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE----CGNAKQANGMLTLALDKGFSPNEITYSHL  274 (384)
Q Consensus       203 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  274 (384)
                      .+...+..    ..+.+.|...++...+.+..   .....+...+..    ......+...+......   .+...+..+
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L  148 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL  148 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence            34333332    45778899999988887632   333333333332    34566667777666654   466777888


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHhHHHHHHH
Q 016681          275 IGGYAK----EGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQ----CGKLEEADKYFKIMKSHSLVPGVDIYESLVG  346 (384)
Q Consensus       275 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  346 (384)
                      ...+..    ..+...+...++...+.|   +......+...+..    ..+++.|..+|++..+.|   ++..+..|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~  222 (265)
T d1ouva_         149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  222 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence            887775    566788888888887765   45555556655654    568999999999999876   5667777777


Q ss_pred             HHhc----cCCHHHHHHHHHHHHhCCCCCCcc
Q 016681          347 IHLE----KGNKAKALHLCEEMVSEGLKPSTS  374 (384)
Q Consensus       347 ~~~~----~g~~~~a~~~~~~~~~~~~~p~~~  374 (384)
                      .|..    ..+.++|.+.|++..+.|..+-..
T Consensus       223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~  254 (265)
T d1ouva_         223 MQYNGEGVTRNEKQAIENFKKGCKLGAKGACD  254 (265)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHHCcCHHHHH
Confidence            7765    447889999999999888665433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.52  E-value=7.6e-07  Score=59.31  Aligned_cols=85  Identities=7%  Similarity=0.028  Sum_probs=39.2

Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE  181 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  181 (384)
                      .+.+.|++++|+..|++.+...+. +..+|..+..++.+.|++++|...|++..+.... +...+..+..+|...|++++
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~~  102 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANA  102 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHHH
Confidence            344444444444444444444322 3444444444444445555555544444443221 34444444445555555555


Q ss_pred             HHHHHHH
Q 016681          182 ANCLMQE  188 (384)
Q Consensus       182 a~~~~~~  188 (384)
                      |.+.+++
T Consensus       103 A~~~l~~  109 (112)
T d1hxia_         103 ALASLRA  109 (112)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.3e-07  Score=61.95  Aligned_cols=96  Identities=13%  Similarity=0.025  Sum_probs=61.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCC-hhhHHHHHHH
Q 016681          237 NEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGE---IQEVLKLYYEMEYKSISPT-LPAYTSLISS  312 (384)
Q Consensus       237 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~  312 (384)
                      ..++..+...+++++|++.|+.....++. +..++..+..++.+.++   .++|+.+++++...+..|+ ..++..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            34566667777777777777777766433 66677777777765443   3457777777765542222 1255566777


Q ss_pred             HHhcCChHHHHHHHHHHhhCC
Q 016681          313 LCQCGKLEEADKYFKIMKSHS  333 (384)
Q Consensus       313 ~~~~g~~~~a~~~~~~~~~~~  333 (384)
                      |.+.|++++|.+.|+++.+..
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhHHHHHHHHHHHHhC
Confidence            777777777777777777643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=6.5e-07  Score=60.43  Aligned_cols=25  Identities=12%  Similarity=0.191  Sum_probs=10.4

Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHH
Q 016681           97 TSLILRIIQEERIEEGMVLLKRMLR  121 (384)
Q Consensus        97 ~~l~~~~~~~~~~~~a~~~~~~~~~  121 (384)
                      ..+..+|.+.|++++|++.|+++++
T Consensus        76 ~~Lg~~y~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          76 FYLAVGNYRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3333444444444444444444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.2e-05  Score=57.95  Aligned_cols=111  Identities=10%  Similarity=0.085  Sum_probs=57.5

Q ss_pred             hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681           25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII  104 (384)
Q Consensus        25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  104 (384)
                      .+......+.+.|++++|+..|...++.......              ....-......+       ...+|+.+..+|.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y~   73 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHHH
Confidence            3444556778888888888888887764211000              000000000000       0123444555555


Q ss_pred             hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681          105 QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR  157 (384)
Q Consensus       105 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  157 (384)
                      +.|++++|+..++..+...+. ++.++..+..++...|++++|...|+...+.
T Consensus        74 k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            566666666666655554322 5555555555666666666666666665554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.1e-07  Score=79.07  Aligned_cols=113  Identities=6%  Similarity=-0.107  Sum_probs=49.8

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681          162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR  241 (384)
Q Consensus       162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  241 (384)
                      +...+..+...+.+.|+.+.|...+.......  | ..++..+...+...+++++|...|.+..+..+. +...|+.+..
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~  194 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAI  194 (497)
T ss_dssp             ------------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHH
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHH
Confidence            34445555555666666666666555443321  1 134455555566666666666666666665433 4556666666


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016681          242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYA  279 (384)
Q Consensus       242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  279 (384)
                      .+...|+..+|...|.+..... +|....+..|...+.
T Consensus       195 ~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         195 LASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence            6666666666666666666543 235555555555544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.5e-05  Score=57.39  Aligned_cols=82  Identities=9%  Similarity=-0.120  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 016681          269 ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIH  348 (384)
Q Consensus       269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  348 (384)
                      .+|+.+..+|.+.|++++|+..++..++.+ +.+..++..+..++...|++++|...|++..+.++. +......+....
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~  140 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            356667788888888888888888888775 446778888888888888999999888888886543 555555554444


Q ss_pred             hccC
Q 016681          349 LEKG  352 (384)
Q Consensus       349 ~~~g  352 (384)
                      .+.+
T Consensus       141 ~~~~  144 (170)
T d1p5qa1         141 QRIR  144 (170)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.30  E-value=0.00044  Score=54.98  Aligned_cols=136  Identities=12%  Similarity=0.088  Sum_probs=73.3

Q ss_pred             CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 016681           21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLI  100 (384)
Q Consensus        21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  100 (384)
                      ||..--..+...|.+.|.++.|..+|..+.         -|..++..+.+.++++.|.+.+.+.      .+..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence            454455566677777788888877776542         2345566667777777777766543      2455677777


Q ss_pred             HHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 016681          101 LRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYG  177 (384)
Q Consensus       101 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  177 (384)
                      ..+.+......+     .+.......++.....++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus        77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence            777666554332     2222233345555566777777777777777777766543 2345566677777776653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.24  E-value=2.6e-05  Score=54.89  Aligned_cols=107  Identities=10%  Similarity=0.009  Sum_probs=61.7

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRY----PNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      +..-...+.+.|++.+|+..|...+..-..    ++.....                    ...    .....+|+.+..
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~--------------------~~~----~~~~~~~~Nla~   75 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD--------------------KKK----NIEISCNLNLAT   75 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH--------------------HHH----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH--------------------hhh----hHHHHHHhhHHH
Confidence            444456677888888888888887753111    1111000                    000    011234555666


Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR  157 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  157 (384)
                      +|.+.|++++|++.+++.+..++. +..+|..+..++...|++++|...|+...+.
T Consensus        76 ~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          76 CYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            666666666666666666665432 5566666666666666666666666666665

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2e-05  Score=53.59  Aligned_cols=55  Identities=9%  Similarity=0.027  Sum_probs=25.8

Q ss_pred             HHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHH
Q 016681           65 ISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRML  120 (384)
Q Consensus        65 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  120 (384)
                      ...+.+.|++++|+..|++..+.+ |.+..++..+..+|.+.|++++|++.+++++
T Consensus        11 G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_          11 GNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            334444444444444444444443 3344444444444444445544444444444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.17  E-value=3.7e-05  Score=54.10  Aligned_cols=74  Identities=19%  Similarity=0.093  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHH
Q 016681          269 ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESL  344 (384)
Q Consensus       269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  344 (384)
                      .+|+.+..+|.+.|++++|++.+++..+.+ +.+..+|..+..++...|++++|...|++..+.++. +..+...+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l  141 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY  141 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence            466677788888888888888888887775 456778888888888888888888888888876543 44444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=5.4e-06  Score=56.54  Aligned_cols=95  Identities=13%  Similarity=0.057  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-------hhHHH
Q 016681          236 FNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL-------PAYTS  308 (384)
Q Consensus       236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~  308 (384)
                      +..+...+...|++++|...|...++.++. +...+..+..+|.+.|++++|...++++.+.. +.+.       .+|..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence            445666777888888888888888776543 67777778888888888888888888776542 1111       24555


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhC
Q 016681          309 LISSLCQCGKLEEADKYFKIMKSH  332 (384)
Q Consensus       309 l~~~~~~~g~~~~a~~~~~~~~~~  332 (384)
                      +...+...+++++|...|++....
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhc
Confidence            666667777788888887776653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.15  E-value=3.1e-05  Score=55.61  Aligned_cols=126  Identities=7%  Similarity=-0.011  Sum_probs=69.7

Q ss_pred             HHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc
Q 016681           28 TLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE  107 (384)
Q Consensus        28 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  107 (384)
                      .....+...|++++|++.|.+.++..            ............       .... +.....+..+..++.+.|
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~-------~~~~-~~~~~~~~nla~~~~~~~   91 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADG-------AKLQ-PVALSCVLNIGACKLKMS   91 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHH-------GGGH-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHH-------HHhC-hhhHHHHHHHHHHHHhhc
Confidence            34556677888888888887765420            000000000000       0000 223445566666677777


Q ss_pred             chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 016681          108 RIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCE  175 (384)
Q Consensus       108 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (384)
                      ++++|+..+++.++.... +..+|..+..++...|+++.|...|+...+.... +......+..+..+
T Consensus        92 ~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~~  157 (169)
T d1ihga1          92 DWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQK  157 (169)
T ss_dssp             CHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            777777777777665433 5666666777777777777777777777665322 44445444444433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=4.5e-06  Score=71.60  Aligned_cols=226  Identities=10%  Similarity=-0.028  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHH
Q 016681            6 VAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNE-ATIRTLISALCKGGQLQTYVDMLDRI   84 (384)
Q Consensus         6 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~   84 (384)
                      +|.+.|++..+.. +..+.++..+..++...+++++|   |++++...  |+. ...+....  .-...+..+.+.++..
T Consensus         4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~--Lw~~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQD--LWNHAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHH--HHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHH--HHHHHHHHHHHHHHHh
Confidence            5777888776542 12345555666666677766655   56655431  211 11111111  0011234455556655


Q ss_pred             HhCCCCCcHHhHHHHH--HHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 016681           85 HGKRCSPMVIVNTSLI--LRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSAN  162 (384)
Q Consensus        85 ~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  162 (384)
                      .+....++..-.....  ......+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+.......   .
T Consensus        76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~  151 (497)
T d1ya0a1          76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C  151 (497)
T ss_dssp             HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence            5443222222111111  11122334444444443333222 1234445555556666666666666655544321   1


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 016681          163 SFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRR  242 (384)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  242 (384)
                      ...+..+...+...|++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+...... |...++..+...
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~  229 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHH
Confidence            2345556666777777777777777766654 33446677777777777777777777777666543 355555555555


Q ss_pred             HHh
Q 016681          243 LCE  245 (384)
Q Consensus       243 ~~~  245 (384)
                      +.+
T Consensus       230 ~~~  232 (497)
T d1ya0a1         230 LSK  232 (497)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.11  E-value=0.00012  Score=52.30  Aligned_cols=95  Identities=9%  Similarity=-0.024  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 016681          269 ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIH  348 (384)
Q Consensus       269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  348 (384)
                      .+|+.+..+|.+.|++++|+..++...+.. +.+..+|..+..++...|++++|...|+++.+..+. +......+....
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~  142 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            356667788888999999999999888875 567778888888999999999999999998886543 555555555554


Q ss_pred             hccCCHH-HHHHHHHHHH
Q 016681          349 LEKGNKA-KALHLCEEMV  365 (384)
Q Consensus       349 ~~~g~~~-~a~~~~~~~~  365 (384)
                      ...+... ...+++..|.
T Consensus       143 ~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHH
Confidence            4444332 3444444443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.08  E-value=0.00014  Score=51.94  Aligned_cols=108  Identities=12%  Similarity=0.044  Sum_probs=59.5

Q ss_pred             hHHHHHHHHhhcCChhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681           25 SFNTLIHVVTKSDRNDLVWRIYQHMLENI---RYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL  101 (384)
Q Consensus        25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  101 (384)
                      .+......+.+.|++.+|+..|+..+..-   ..++...                 ......+       ...+|+.+..
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~~~-------~~~~~~Nla~   72 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASESF-------LLAAFLNLAM   72 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcchh-------HHHHHHhHHH
Confidence            34445567778888888888887766420   1111100                 0000000       1234444555


Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR  157 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  157 (384)
                      +|.+.|++++|+..++..+..... +..+|..+..++...|++++|...|+.+.+.
T Consensus        73 ~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          73 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            666666666666666666655432 5556666666666666666666666666654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.07  E-value=4.1e-05  Score=55.30  Aligned_cols=121  Identities=14%  Similarity=0.152  Sum_probs=59.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 016681          238 EMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCG  317 (384)
Q Consensus       238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  317 (384)
                      .........|++++|...|.........+  ..     ..+ ..+.+  +...-..+...    ....+..+...+...|
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~--~l-----~~~-~~~~w--~~~~r~~l~~~----~~~a~~~la~~~~~~g   81 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREWRGP--VL-----DDL-RDFQF--VEPFATALVED----KVLAHTAKAEAEIACG   81 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSS--TT-----GGG-TTSTT--HHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCccc--cc-----ccC-cchHH--HHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence            33456778888999888888887641110  00     000 00000  00000001000    1123444555555666


Q ss_pred             ChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh-----CCCCCCc
Q 016681          318 KLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS-----EGLKPST  373 (384)
Q Consensus       318 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~  373 (384)
                      ++++|...++++.+..+. +...|..++.++...|+.++|++.|+++.+     .|+.|..
T Consensus        82 ~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          82 RASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             CchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            666666666666554433 555566666666666666666666655422     3555554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.07  E-value=5.3e-05  Score=54.71  Aligned_cols=123  Identities=12%  Similarity=0.028  Sum_probs=76.6

Q ss_pred             HHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcc
Q 016681           29 LIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEER  108 (384)
Q Consensus        29 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  108 (384)
                      ........|++++|.+.|...+....  ....        .......-+...-..+.    +.....+..+...+...|+
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~r--G~~l--------~~~~~~~w~~~~r~~l~----~~~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWR--GPVL--------DDLRDFQFVEPFATALV----EDKVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCC--SSTT--------GGGTTSTTHHHHHHHHH----HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCc--cccc--------ccCcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence            34567888999999999988887411  1100        00000001111111111    1124566677777888888


Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChHHH
Q 016681          109 IEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLK-----RGFSANSFVY  166 (384)
Q Consensus       109 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~  166 (384)
                      +++|+..++++...... +...|..++.++.+.|+..+|.+.|+++..     .|+.|...+-
T Consensus        83 ~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          83 ASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             chHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            88888888888776543 777788888888888888888888877643     4777776553

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.06  E-value=8.5e-05  Score=53.21  Aligned_cols=61  Identities=13%  Similarity=-0.046  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016681          236 FNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK  297 (384)
Q Consensus       236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  297 (384)
                      +..+..++.+.|++++|+..+..+++..+. +...|..+..++.+.|++++|...|++..+.
T Consensus        80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          80 VLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            334444445555555555555555444322 4444555555555555555555555555443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.05  E-value=6.8e-06  Score=63.62  Aligned_cols=69  Identities=9%  Similarity=0.072  Sum_probs=39.5

Q ss_pred             HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 016681           33 VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRI  103 (384)
Q Consensus        33 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  103 (384)
                      ..+.|++++|+..+++.++..+ -|...+..+...++..|++++|...|+...+.. +.+...+..+...+
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll   74 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLV   74 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            3455666666666666666533 255666666666666666666666666666553 33333443333333

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.95  E-value=1.2e-05  Score=62.29  Aligned_cols=123  Identities=11%  Similarity=-0.052  Sum_probs=79.5

Q ss_pred             HHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 016681           68 LCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESA  147 (384)
Q Consensus        68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  147 (384)
                      ..+.|++++|+..+++..+.. |.+...+..+...++..|++++|.+.++...+.... +...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHH
Confidence            456789999999999998887 778899999999999999999999999998876533 344444444333322222222


Q ss_pred             HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016681          148 LVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENA  192 (384)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  192 (384)
                      ..-.......+.+++...+......+...|+.++|.+.++++.+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            111100000111222333344456677888899998888887764

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.95  E-value=7e-05  Score=52.01  Aligned_cols=29  Identities=17%  Similarity=0.007  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681          110 EEGMVLLKRMLRKNMIHDTIAYSLIVYAKV  139 (384)
Q Consensus       110 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  139 (384)
                      ++|++.|++.++..+. +..+|..+..+|.
T Consensus        58 ~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~   86 (145)
T d1zu2a1          58 QEAITKFEEALLIDPK-KDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcch-hhHHHhhHHHHHH
Confidence            4444455544443322 3444444444443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.92  E-value=0.0028  Score=50.20  Aligned_cols=253  Identities=10%  Similarity=0.001  Sum_probs=139.8

Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681           26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ  105 (384)
Q Consensus        26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  105 (384)
                      |..++..+.+.++++.|.+++.+.      -+..+|..+...+.+......+     .+........+.....++..|-.
T Consensus        43 ~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~  111 (336)
T d1b89a_          43 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQD  111 (336)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHH
Confidence            556788888888888888776543      2677888888888887766543     22233334456666788899999


Q ss_pred             hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 016681          106 EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCL  185 (384)
Q Consensus       106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  185 (384)
                      .|.+++...+++..... -.++...++.++..|++.+. ++   +.+.+...+..   .....++..|.+.+-++++.-+
T Consensus       112 ~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~k---l~e~l~~~s~~---y~~~k~~~~c~~~~l~~elv~L  183 (336)
T d1b89a_         112 RGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QK---MREHLELFWSR---VNIPKVLRAAEQAHLWAELVFL  183 (336)
T ss_dssp             TTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HH---HHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHH
T ss_pred             cCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HH---HHHHHHhcccc---CCHHHHHHHHHHcCChHHHHHH
Confidence            99999999999987654 24477788889988888643 33   33333332111   1222334444444444444444


Q ss_pred             HHHHHHcC--------CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 016681          186 MQEMENAG--------LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLT  257 (384)
Q Consensus       186 ~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  257 (384)
                      +..+....        ..++..-....+..+.+..+++...++.....+.    ++...+.++......-+..       
T Consensus       184 y~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~-------  252 (336)
T d1b89a_         184 YDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHT-------  252 (336)
T ss_dssp             HHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHH-------
T ss_pred             HHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc----CHHHHHHHHHHhccCCCHH-------
Confidence            33321100        1222223333444444444444444433333321    1122233333332222222       


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681          258 LALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYF  326 (384)
Q Consensus       258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  326 (384)
                                     .++..+.+.++..-....++...+.|   +..+.+++...|...++++.-.+..
T Consensus       253 ---------------r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         253 ---------------RAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             ---------------HHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------HHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence                           23334444555555556665555544   3457777777787777765544444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.87  E-value=0.00011  Score=50.94  Aligned_cols=84  Identities=2%  Similarity=-0.114  Sum_probs=44.0

Q ss_pred             CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----------cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhh
Q 016681           37 DRNDLVWRIYQHMLENIRYPNEATIRTLISALCK----------GGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQE  106 (384)
Q Consensus        37 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  106 (384)
                      +.+++|++.|+...+..+ .+..++..+..++..          .+.+++|+..|++..+.+ |.+..+|..+..+|...
T Consensus        11 ~~fe~A~~~~e~al~~~P-~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHc
Confidence            334455555555444322 134444444443332          233456777777776665 55666777776666654


Q ss_pred             cc-----------hHHHHHHHHHHHHc
Q 016681          107 ER-----------IEEGMVLLKRMLRK  122 (384)
Q Consensus       107 ~~-----------~~~a~~~~~~~~~~  122 (384)
                      |+           +++|.+.|++..+.
T Consensus        89 g~~~~~~~~~~~~~~~A~~~~~kal~l  115 (145)
T d1zu2a1          89 AFLTPDETEAKHNFDLATQFFQQAVDE  115 (145)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHhHHHhhhhhhccccc
Confidence            43           45555555555543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.45  E-value=0.002  Score=45.00  Aligned_cols=90  Identities=17%  Similarity=0.008  Sum_probs=51.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCC-CCC----------hhhHHHHHHHHHhcCChHHHHHHHHHHhhC-----CCCCC---
Q 016681          277 GYAKEGEIQEVLKLYYEMEYKSI-SPT----------LPAYTSLISSLCQCGKLEEADKYFKIMKSH-----SLVPG---  337 (384)
Q Consensus       277 ~~~~~~~~~~a~~~~~~~~~~~~-~~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~---  337 (384)
                      .+.+.|++++|+..|++..+..- .|+          ..+|+.+..+|...|++++|...+++..+.     ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            34455666666666666554210 011          234566666677777777777766665531     11111   


Q ss_pred             --HhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681          338 --VDIYESLVGIHLEKGNKAKALHLCEEMVS  366 (384)
Q Consensus       338 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  366 (384)
                        ...+..+..+|...|++++|...|++..+
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              12355566777777777777777777654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.44  E-value=0.0029  Score=44.11  Aligned_cols=89  Identities=15%  Similarity=0.101  Sum_probs=46.9

Q ss_pred             HHHhhcchHHHHHHHHHHHHcCCC-C----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCC---
Q 016681          102 RIIQEERIEEGMVLLKRMLRKNMI-H----------DTIAYSLIVYAKVKMRNLESALVVYEEMLKR-----GFSAN---  162 (384)
Q Consensus       102 ~~~~~~~~~~a~~~~~~~~~~~~~-~----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---  162 (384)
                      .+...|++++|++.|++.++.... |          ...+|+.+..+|.+.|++++|...+++..+.     ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            344556666666666665542110 1          1234555666666666666666666665432     11111   


Q ss_pred             --hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681          163 --SFVYTTFIGAYCEYGKIEEANCLMQEME  190 (384)
Q Consensus       163 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~  190 (384)
                        ...+..+..+|...|++++|+..|++..
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence              1234455666666666666666666654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.25  E-value=0.011  Score=39.67  Aligned_cols=79  Identities=9%  Similarity=0.030  Sum_probs=38.9

Q ss_pred             cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHH
Q 016681            2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCK----GGQLQTY   77 (384)
Q Consensus         2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a   77 (384)
                      +|+++|++.|++..+.|   ++..+..+.  .....+.++|.+++++..+.|   ++.....|...|..    ..+.++|
T Consensus         7 kd~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence            35667777777776665   223333332  223345556666666555543   33333444443332    2344555


Q ss_pred             HHHHHHHHhCC
Q 016681           78 VDMLDRIHGKR   88 (384)
Q Consensus        78 ~~~~~~~~~~~   88 (384)
                      .++|++..+.+
T Consensus        79 ~~~~~~aa~~g   89 (133)
T d1klxa_          79 AQYYSKACGLN   89 (133)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHhhhhccC
Confidence            55555555444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0013  Score=41.43  Aligned_cols=64  Identities=11%  Similarity=0.021  Sum_probs=32.5

Q ss_pred             hHHHHHHHHhhcCChhHHHHHHHHHHhcCC-----CCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 016681           25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIR-----YPN-EATIRTLISALCKGGQLQTYVDMLDRIHGKR   88 (384)
Q Consensus        25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   88 (384)
                      .+-.+...+.+.|++++|+..|++..+...     .++ ..++..+..++.+.|++++|+..++++.+.+
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            333445555566666666666655544210     111 3345555555555555555555555555543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.0014  Score=41.23  Aligned_cols=66  Identities=12%  Similarity=0.094  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhCC-----CCC-cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 016681           58 EATIRTLISALCKGGQLQTYVDMLDRIHGKR-----CSP-MVIVNTSLILRIIQEERIEEGMVLLKRMLRKN  123 (384)
Q Consensus        58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  123 (384)
                      ...+-.+...+.+.|++++|+..|++..+..     ..+ ...+++.+..++.+.|++++|++.++++++..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            3344455666666777777777776654321     011 13456666666666666666666666666654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.85  E-value=0.027  Score=37.64  Aligned_cols=82  Identities=13%  Similarity=-0.010  Sum_probs=40.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhc----cCC
Q 016681          282 GEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQ----CGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLE----KGN  353 (384)
Q Consensus       282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~  353 (384)
                      .+.++|.+.+++..+.|   +......|...|..    ..+.++|.++|++..+.|   ++.....|...|..    ..+
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence            34455555555555444   22333333333332    234566666666665554   33344444444433    345


Q ss_pred             HHHHHHHHHHHHhCCC
Q 016681          354 KAKALHLCEEMVSEGL  369 (384)
Q Consensus       354 ~~~a~~~~~~~~~~~~  369 (384)
                      .++|.+++++..+.|.
T Consensus       111 ~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         111 EKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            6666666666666554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.56  E-value=0.042  Score=35.47  Aligned_cols=138  Identities=11%  Similarity=0.078  Sum_probs=67.4

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 016681          175 EYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANG  254 (384)
Q Consensus       175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  254 (384)
                      -.|..++..+++.+...+.   +..-|+.++.-....-+-+-..++++.+-+.   .|.          ..+++......
T Consensus        14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~   77 (161)
T d1wy6a1          14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE   77 (161)
T ss_dssp             HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred             HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHH
Confidence            3456666666666655432   2344555554444444444444444444322   111          11222222222


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 016681          255 MLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSL  334 (384)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  334 (384)
                      .+-.+-     .+...+...++.+.+.|+-++..++++.+.+.+ .|++...-.+..+|.+.|...++.+++.+..+.|+
T Consensus        78 C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          78 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            221111     133444455555566666666666666655543 45556666666666666666666666666666554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.24  E-value=0.068  Score=34.48  Aligned_cols=61  Identities=5%  Similarity=0.037  Sum_probs=25.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q 016681          167 TTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK  228 (384)
Q Consensus       167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  228 (384)
                      +..++...++|+-++..++++++.+.+ .|++...-.+..+|.+.|...++-+++.+.-+.|
T Consensus        90 dlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          90 NKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            333444444444444444444433322 3333444444444444444444444444444443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.23  E-value=0.36  Score=31.18  Aligned_cols=47  Identities=9%  Similarity=-0.003  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHhCCCCCc-HHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681           75 QTYVDMLDRIHGKRCSPM-VIVNTSLILRIIQEERIEEGMVLLKRMLRK  122 (384)
Q Consensus        75 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  122 (384)
                      ++++.+|+++.+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+++.
T Consensus        55 ~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          55 RLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            34555555544332 112 233334444444555555555555554443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.24  E-value=0.47  Score=28.84  Aligned_cols=62  Identities=13%  Similarity=0.194  Sum_probs=40.2

Q ss_pred             CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHH
Q 016681          283 EIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLV  345 (384)
Q Consensus       283 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  345 (384)
                      +.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+-.+.+. .++...|..++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil   82 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI   82 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence            444566666666666777777777777777777777777777777666531 22344555544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.16  E-value=0.62  Score=30.01  Aligned_cols=67  Identities=7%  Similarity=0.104  Sum_probs=37.7

Q ss_pred             CcHHhHHHHHHHHHhh---cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681           91 PMVIVNTSLILRIIQE---ERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR  157 (384)
Q Consensus        91 ~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  157 (384)
                      +++.+--....+++++   .+.++++.+++++.+.+..-....+..+.-+|.+.|++++|.+.++.+.+.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            3444444444455543   345567777777665432211234445555677777777777777777665

>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy-chain linker domain
domain: Clathrin heavy-chain linker domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.15  E-value=1  Score=30.03  Aligned_cols=31  Identities=3%  Similarity=-0.026  Sum_probs=14.2

Q ss_pred             hcCCCCchhhHHHHHHHHhhcCChhHHHHHH
Q 016681           16 QRGFSLSLISFNTLIHVVTKSDRNDLVWRIY   46 (384)
Q Consensus        16 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   46 (384)
                      +.|++.....|..-.+.+...|++.+|-++-
T Consensus        24 r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~a   54 (157)
T d1bpoa1          24 RNNLAGAEELFARKFNALFAQGNYSEAAKVA   54 (157)
T ss_dssp             HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3344444444444444444455555444443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.20  E-value=0.91  Score=27.55  Aligned_cols=61  Identities=18%  Similarity=0.226  Sum_probs=35.2

Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 016681          214 IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLI  275 (384)
Q Consensus       214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  275 (384)
                      .-++.+-+..+...+..|++....+.+++|-+.+++..|.++|+.+..+. .++...|..++
T Consensus        22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil   82 (105)
T d1v54e_          22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI   82 (105)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence            34455555556666666666666666666666666666666666665432 12333444443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=91.05  E-value=3.3  Score=33.70  Aligned_cols=181  Identities=10%  Similarity=0.024  Sum_probs=105.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH----HhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 016681          177 GKIEEANCLMQEMENAGLKPYDETFNLLIEGC----AKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQA  252 (384)
Q Consensus       177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  252 (384)
                      .+.+.+..++........ .+...+..+-...    ...+..+.+...+........  +.......+......+++..+
T Consensus       228 ~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~  304 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL  304 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred             cChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence            456667777766655431 2222222222222    234455666666666555432  334444455555667788888


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------CCCCCh----------hh-----
Q 016681          253 NGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK------------SISPTL----------PA-----  305 (384)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~----------~~-----  305 (384)
                      ...+..+... ......-.--+..++...|+.+.|...|..+...            |.+++.          ..     
T Consensus       305 ~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~  383 (450)
T d1qsaa1         305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP  383 (450)
T ss_dssp             HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred             HHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcCh
Confidence            8877766432 1112333344567777888888888888876431            211110          00     


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHH
Q 016681          306 YTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEM  364 (384)
Q Consensus       306 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  364 (384)
                      -..-+..+...|+...|...|..+...   .+......+.....+.|.++.|+....+.
T Consensus       384 ~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         384 EMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            012345567788888888888877653   24556667778888889988888776655