Citrus Sinensis ID: 016702
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 384 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SA96 | 392 | Arogenate dehydratase/pre | yes | no | 0.802 | 0.785 | 0.704 | 1e-128 | |
| Q9SGD6 | 413 | Arogenate dehydratase/pre | no | no | 0.783 | 0.728 | 0.653 | 1e-114 | |
| Q9SSE7 | 381 | Arogenate dehydratase/pre | no | no | 0.911 | 0.918 | 0.594 | 1e-113 | |
| Q9ZUY3 | 424 | Arogenate dehydratase 3, | no | no | 0.864 | 0.783 | 0.598 | 1e-113 | |
| O22241 | 424 | Arogenate dehydratase 4, | no | no | 0.861 | 0.780 | 0.591 | 1e-109 | |
| Q9FNJ8 | 425 | Arogenate dehydratase 5, | no | no | 0.854 | 0.771 | 0.579 | 1e-103 | |
| O67085 | 362 | P-protein OS=Aquifex aeol | yes | no | 0.687 | 0.729 | 0.370 | 4e-39 | |
| P43900 | 385 | P-protein OS=Haemophilus | yes | no | 0.828 | 0.825 | 0.288 | 7e-37 | |
| Q8K9F8 | 385 | P-protein OS=Buchnera aph | yes | no | 0.695 | 0.693 | 0.293 | 8e-35 | |
| Q02286 | 387 | P-protein OS=Enterobacter | N/A | no | 0.700 | 0.695 | 0.336 | 2e-34 |
| >sp|Q9SA96|AROD1_ARATH Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 457 bits (1175), Expect = e-128, Method: Compositional matrix adjust.
Identities = 217/308 (70%), Positives = 257/308 (83%)
Query: 74 KDLISLPKPLTVADFTVTPNDGTKVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTF 133
+DL LPKPLT + D +KVRISF+G+PG++SE AALKA+P CETVPC++FE F
Sbjct: 82 RDLSMLPKPLTANSLYSSDGDDSKVRISFQGIPGAYSETAALKAFPNCETVPCEQFEAAF 141
Query: 134 KAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQL 193
+AVELWL DKAVLPIENS GSIHRNYDLLLRHRLHIV EV L N CLL +PG+K + +
Sbjct: 142 QAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVQEVHLPVNHCLLGVPGVKKEDI 201
Query: 194 KRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLN 253
K VLSHPQAL L LG+ R + DTA+AAQ V+S+G D GA+AS RAA IYGL+
Sbjct: 202 KCVLSHPQALDQCVNSLNNLGIQRISAKDTATAAQTVSSSGKIDVGAIASVRAANIYGLD 261
Query: 254 ILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPGVLFKALAVFALREIN 313
ILA+ IQD+ +N+TRFL+LAR+P+IPRTD+ +KTSIVF+L+EGPGVLFKALAVFALR IN
Sbjct: 262 ILAENIQDDVNNVTRFLILAREPMIPRTDRPYKTSIVFSLEEGPGVLFKALAVFALRSIN 321
Query: 314 LTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLR 373
L+KIESRPQR+RPLRVVD SNNG+AKYFDYLFYIDFEASMAD RAQ+ALGHLQEFA+F+R
Sbjct: 322 LSKIESRPQRRRPLRVVDGSNNGSAKYFDYLFYIDFEASMADTRAQHALGHLQEFASFIR 381
Query: 374 VLGCYPMD 381
+LGCYPMD
Sbjct: 382 ILGCYPMD 389
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Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine. Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 9EC: 1 |
| >sp|Q9SGD6|AROD6_ARATH Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9SSE7|AROD2_ARATH Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9ZUY3|AROD3_ARATH Arogenate dehydratase 3, chloroplastic OS=Arabidopsis thaliana GN=ADT3 PE=1 SV=1 | Back alignment and function description |
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| >sp|O22241|AROD4_ARATH Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana GN=ADT4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9FNJ8|AROD5_ARATH Arogenate dehydratase 5, chloroplastic OS=Arabidopsis thaliana GN=ADT5 PE=1 SV=1 | Back alignment and function description |
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| >sp|O67085|PHEA_AQUAE P-protein OS=Aquifex aeolicus (strain VF5) GN=pheA PE=4 SV=1 | Back alignment and function description |
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| >sp|P43900|PHEA_HAEIN P-protein OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pheA PE=4 SV=1 | Back alignment and function description |
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| >sp|Q8K9F8|PHEA_BUCAP P-protein OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=pheA PE=4 SV=1 | Back alignment and function description |
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| >sp|Q02286|PHEA_ENTAG P-protein OS=Enterobacter agglomerans GN=pheA PE=4 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 384 | ||||||
| 297739158 | 418 | unnamed protein product [Vitis vinifera] | 0.968 | 0.889 | 0.740 | 1e-162 | |
| 225447035 | 395 | PREDICTED: arogenate dehydratase/prephen | 0.971 | 0.944 | 0.739 | 1e-162 | |
| 255577573 | 373 | prephenate dehydratase, putative [Ricinu | 0.966 | 0.994 | 0.718 | 1e-150 | |
| 449522402 | 388 | PREDICTED: arogenate dehydratase/prephen | 0.893 | 0.884 | 0.735 | 1e-144 | |
| 449468368 | 388 | PREDICTED: arogenate dehydratase/prephen | 0.893 | 0.884 | 0.735 | 1e-144 | |
| 148909434 | 402 | unknown [Picea sitchensis] | 0.854 | 0.815 | 0.734 | 1e-143 | |
| 357453373 | 375 | Arogenate dehydratase/prephenate dehydra | 0.929 | 0.952 | 0.684 | 1e-142 | |
| 356543698 | 384 | PREDICTED: arogenate dehydratase/prephen | 0.828 | 0.828 | 0.767 | 1e-137 | |
| 224113661 | 400 | arogenate/prephenate dehydratase [Populu | 0.864 | 0.83 | 0.700 | 1e-136 | |
| 255554867 | 403 | prephenate dehydratase, putative [Ricinu | 0.809 | 0.771 | 0.733 | 1e-135 |
| >gi|297739158|emb|CBI28809.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 286/386 (74%), Positives = 321/386 (83%), Gaps = 14/386 (3%)
Query: 6 VAVLGWGDSGSRASGLVFNGVRNSNRTPRKCVCRGGFSGLSGDSVIKSADNQNTGKSSNV 65
V+ LGW D GS+ SG+V N + + TP FSGLS IKS D+ N
Sbjct: 36 VSQLGWEDLGSKPSGVVCNWGKGTAETPSVV-----FSGLSTHRGIKSLDDGNPSNPGTE 90
Query: 66 ---------NDVPGKLCKDLISLPKPLTVADFTVTPNDGTKVRISFKGLPGSFSEDAALK 116
N+ G++ +DL S PKPL+V D + P DGTKVRIS+KG+PG++SEDAALK
Sbjct: 91 LQGIVDKVDNNDSGRIHRDLASFPKPLSVTDISAAPKDGTKVRISYKGVPGAYSEDAALK 150
Query: 117 AYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL 176
AYP CETVPCDEFED FKAVELWLA+KAVLPIENS GSIHRNYDLLLRHRLHIVGEVQL
Sbjct: 151 AYPHCETVPCDEFEDAFKAVELWLAEKAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVQL 210
Query: 177 AANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLR 236
A N CLLA+PG+ DQL+RVLSHPQALA SDI+L++LGV+RENVDD+A AAQYVAS+GLR
Sbjct: 211 AVNLCLLAIPGVGIDQLRRVLSHPQALAQSDIILSKLGVSRENVDDSAGAAQYVASHGLR 270
Query: 237 DAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEG 296
DAG VASARAAEIYGLNILA+RIQD+ DNITRFLVLARDPIIPRT+KLFKTSIVFTL+EG
Sbjct: 271 DAGVVASARAAEIYGLNILAERIQDDFDNITRFLVLARDPIIPRTNKLFKTSIVFTLEEG 330
Query: 297 PGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADP 356
PGVLFKALAVFALR+INLTKIESRPQRK+PLRVVDDSN G+AKYFDYLFYIDFEASMA+P
Sbjct: 331 PGVLFKALAVFALRDINLTKIESRPQRKKPLRVVDDSNTGSAKYFDYLFYIDFEASMAEP 390
Query: 357 RAQNALGHLQEFATFLRVLGCYPMDA 382
RAQ AL HLQEFATFLRVLGCYPMD+
Sbjct: 391 RAQTALAHLQEFATFLRVLGCYPMDS 416
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447035|ref|XP_002269463.1| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255577573|ref|XP_002529664.1| prephenate dehydratase, putative [Ricinus communis] gi|223530844|gb|EEF32706.1| prephenate dehydratase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449522402|ref|XP_004168215.1| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449468368|ref|XP_004151893.1| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|148909434|gb|ABR17815.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
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| >gi|357453373|ref|XP_003596963.1| Arogenate dehydratase/prephenate dehydratase [Medicago truncatula] gi|124360522|gb|ABN08532.1| Prephenate dehydratase with ACT region [Medicago truncatula] gi|355486011|gb|AES67214.1| Arogenate dehydratase/prephenate dehydratase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356543698|ref|XP_003540297.1| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224113661|ref|XP_002316535.1| arogenate/prephenate dehydratase [Populus trichocarpa] gi|222859600|gb|EEE97147.1| arogenate/prephenate dehydratase [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255554867|ref|XP_002518471.1| prephenate dehydratase, putative [Ricinus communis] gi|223542316|gb|EEF43858.1| prephenate dehydratase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 384 | ||||||
| TAIR|locus:2027332 | 392 | ADT1 "arogenate dehydratase 1" | 0.802 | 0.785 | 0.681 | 1.1e-110 | |
| TAIR|locus:2091127 | 381 | ADT2 "arogenate dehydratase 2" | 0.934 | 0.942 | 0.571 | 1.4e-103 | |
| TAIR|locus:2199963 | 413 | ADT6 "arogenate dehydratase 6" | 0.789 | 0.733 | 0.629 | 2.3e-103 | |
| TAIR|locus:2042021 | 424 | PD1 "prephenate dehydratase 1" | 0.864 | 0.783 | 0.577 | 3.3e-102 | |
| TAIR|locus:2101630 | 424 | ADT4 "arogenate dehydratase 4" | 0.861 | 0.780 | 0.567 | 3.9e-99 | |
| TAIR|locus:2162459 | 425 | ADT5 "arogenate dehydratase 5" | 0.854 | 0.771 | 0.567 | 1.1e-96 | |
| TIGR_CMR|DET_0461 | 358 | DET_0461 "chorismate mutase/pr | 0.687 | 0.737 | 0.341 | 2.1e-38 | |
| TIGR_CMR|SPO_3539 | 284 | SPO_3539 "prephenate dehydrata | 0.710 | 0.961 | 0.350 | 1.5e-35 | |
| UNIPROTKB|Q9KU24 | 391 | VC_0705 "Chorismate mutase/pre | 0.700 | 0.687 | 0.340 | 5.1e-35 | |
| TIGR_CMR|VC_0705 | 391 | VC_0705 "chorismate mutase/pre | 0.700 | 0.687 | 0.340 | 5.1e-35 |
| TAIR|locus:2027332 ADT1 "arogenate dehydratase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
Identities = 210/308 (68%), Positives = 249/308 (80%)
Query: 74 KDLISLPKPLTVADFTVTPNDGTKVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTF 133
+DL LPKPLT + D +KVRISF+G+PG++SE AALKA+P CETVPC++FE F
Sbjct: 82 RDLSMLPKPLTANSLYSSDGDDSKVRISFQGIPGAYSETAALKAFPNCETVPCEQFEAAF 141
Query: 134 KAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQL 193
+AVELWL DKAVLPIENS GSIHRNYDLLLRHRLHIV EV L N CLL +PG+K + +
Sbjct: 142 QAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVQEVHLPVNHCLLGVPGVKKEDI 201
Query: 194 KRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDXXXXXXXXXXEIYGLN 253
K VLSHPQAL L LG+ R + DTA+AAQ V+S+G D IYGL+
Sbjct: 202 KCVLSHPQALDQCVNSLNNLGIQRISAKDTATAAQTVSSSGKIDVGAIASVRAANIYGLD 261
Query: 254 ILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPGVLFKALAVFALREIN 313
ILA+ IQD+ +N+TRFL+LAR+P+IPRTD+ +KTSIVF+L+EGPGVLFKALAVFALR IN
Sbjct: 262 ILAENIQDDVNNVTRFLILAREPMIPRTDRPYKTSIVFSLEEGPGVLFKALAVFALRSIN 321
Query: 314 LTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLR 373
L+KIESRPQR+RPLRVVD SNNG+AKYFDYLFYIDFEASMAD RAQ+ALGHLQEFA+F+R
Sbjct: 322 LSKIESRPQRRRPLRVVDGSNNGSAKYFDYLFYIDFEASMADTRAQHALGHLQEFASFIR 381
Query: 374 VLGCYPMD 381
+LGCYPMD
Sbjct: 382 ILGCYPMD 389
|
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| TAIR|locus:2091127 ADT2 "arogenate dehydratase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2199963 ADT6 "arogenate dehydratase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2042021 PD1 "prephenate dehydratase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2101630 ADT4 "arogenate dehydratase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2162459 ADT5 "arogenate dehydratase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TIGR_CMR|DET_0461 DET_0461 "chorismate mutase/prephenate dehydratase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SPO_3539 SPO_3539 "prephenate dehydratase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9KU24 VC_0705 "Chorismate mutase/prephenate dehydratase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
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| TIGR_CMR|VC_0705 VC_0705 "chorismate mutase/prephenate dehydratase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SA96 | AROD1_ARATH | 4, ., 2, ., 1, ., 9, 1 | 0.7045 | 0.8020 | 0.7857 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 4.2.1.91 | 0.946 |
| 3rd Layer | 4.2.1 | 0.963 |
| 4th Layer | 4.2.1.51 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 384 | |||
| PLN02317 | 382 | PLN02317, PLN02317, arogenate dehydratase | 0.0 | |
| COG0077 | 279 | COG0077, PheA, Prephenate dehydratase [Amino acid | 4e-99 | |
| PRK11898 | 283 | PRK11898, PRK11898, prephenate dehydratase; Provis | 1e-78 | |
| PRK11899 | 279 | PRK11899, PRK11899, prephenate dehydratase; Provis | 7e-77 | |
| pfam00800 | 181 | pfam00800, PDT, Prephenate dehydratase | 8e-73 | |
| PRK10622 | 386 | PRK10622, pheA, bifunctional chorismate mutase/pre | 2e-49 | |
| cd04905 | 80 | cd04905, ACT_CM-PDT, C-terminal ACT domain of the | 4e-34 | |
| cd04880 | 75 | cd04880, ACT_AAAH-PDT-like, ACT domain of the nonh | 3e-27 | |
| cd04904 | 74 | cd04904, ACT_AAAH, ACT domain of the nonheme iron- | 2e-09 | |
| TIGR01268 | 436 | TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydrox | 1e-06 | |
| cd04931 | 90 | cd04931, ACT_PAH, ACT domain of the nonheme iron-d | 3e-06 | |
| cd04930 | 115 | cd04930, ACT_TH, ACT domain of the nonheme iron-de | 8e-05 | |
| cd04929 | 74 | cd04929, ACT_TPH, ACT domain of the nonheme iron-d | 2e-04 | |
| cd02116 | 60 | cd02116, ACT, ACT domains are commonly involved in | 8e-04 |
| >gnl|CDD|215181 PLN02317, PLN02317, arogenate dehydratase | Back alignment and domain information |
|---|
Score = 604 bits (1560), Expect = 0.0
Identities = 242/378 (64%), Positives = 289/378 (76%), Gaps = 8/378 (2%)
Query: 13 DSGSRASGLVFNGVRNSNRTPRKCVCRGGFS------GLSGDSVIKSADNQNTGKSSNVN 66
R+ F S R + C S G + S + G
Sbjct: 6 PRTPRSGSSSFPARWASRRAAWQSSCAILSSKVRSPEGDAPPSRPAVESSGGAGLVVATQ 65
Query: 67 DVPGKLCKDLISLPKPLTVADFTVTPNDGTKVRISFKGLPGSFSEDAALKAYPKCETVPC 126
V +DL LP+PL++ D + +P G+K+R++++G+PG++SE AA KAYP CE VPC
Sbjct: 66 SVSFH--RDLSGLPRPLSITDLSPSPMHGSKLRVAYQGVPGAYSEAAARKAYPNCEAVPC 123
Query: 127 DEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALP 186
++FE F+AVELWLAD+AVLPIENS GSIHRNYDLLLRHRLHIVGEVQL + CLLALP
Sbjct: 124 EQFEAAFQAVELWLADRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALP 183
Query: 187 GIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARA 246
G++ ++LKRV+SHPQALA + LT+LGV RE VDDTA AA+ VA+NGLRD A+ASARA
Sbjct: 184 GVRKEELKRVISHPQALAQCENTLTKLGVVREAVDDTAGAAKMVAANGLRDTAAIASARA 243
Query: 247 AEIYGLNILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPGVLFKALAV 306
AE+YGL+ILA+ IQD+ DN+TRFL+LAR+PIIPRTD+ FKTSIVF+L+EGPGVLFKALAV
Sbjct: 244 AELYGLDILAEGIQDDSDNVTRFLMLAREPIIPRTDRPFKTSIVFSLEEGPGVLFKALAV 303
Query: 307 FALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQ 366
FALR+INLTKIESRPQRKRPLRVVDDSN+GTAKYFDYLFY+DFEASMADPRAQNAL HLQ
Sbjct: 304 FALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHLQ 363
Query: 367 EFATFLRVLGCYPMDATL 384
EFATFLRVLG YPMD T
Sbjct: 364 EFATFLRVLGSYPMDMTP 381
|
Length = 382 |
| >gnl|CDD|223155 COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|237013 PRK11898, PRK11898, prephenate dehydratase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237014 PRK11899, PRK11899, prephenate dehydratase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216127 pfam00800, PDT, Prephenate dehydratase | Back alignment and domain information |
|---|
| >gnl|CDD|182594 PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|153177 cd04905, ACT_CM-PDT, C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme | Back alignment and domain information |
|---|
| >gnl|CDD|153152 cd04880, ACT_AAAH-PDT-like, ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
| >gnl|CDD|153176 cd04904, ACT_AAAH, ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
| >gnl|CDD|130335 TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydroxylase, tetrameric form | Back alignment and domain information |
|---|
| >gnl|CDD|153203 cd04931, ACT_PAH, ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) | Back alignment and domain information |
|---|
| >gnl|CDD|153202 cd04930, ACT_TH, ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH) | Back alignment and domain information |
|---|
| >gnl|CDD|153201 cd04929, ACT_TPH, ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes | Back alignment and domain information |
|---|
| >gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 384 | |||
| PRK10622 | 386 | pheA bifunctional chorismate mutase/prephenate deh | 100.0 | |
| COG0077 | 279 | PheA Prephenate dehydratase [Amino acid transport | 100.0 | |
| PRK11899 | 279 | prephenate dehydratase; Provisional | 100.0 | |
| PLN02317 | 382 | arogenate dehydratase | 100.0 | |
| PRK11898 | 283 | prephenate dehydratase; Provisional | 100.0 | |
| KOG2797 | 377 | consensus Prephenate dehydratase [Amino acid trans | 100.0 | |
| PF00800 | 181 | PDT: Prephenate dehydratase Caution this is only a | 100.0 | |
| PRK06034 | 279 | hypothetical protein; Provisional | 99.92 | |
| cd04904 | 74 | ACT_AAAH ACT domain of the nonheme iron-dependent, | 99.86 | |
| cd04931 | 90 | ACT_PAH ACT domain of the nonheme iron-dependent a | 99.84 | |
| cd04930 | 115 | ACT_TH ACT domain of the nonheme iron-dependent ar | 99.82 | |
| cd04905 | 80 | ACT_CM-PDT C-terminal ACT domain of the bifunction | 99.82 | |
| cd04929 | 74 | ACT_TPH ACT domain of the nonheme iron-dependent a | 99.82 | |
| cd04880 | 75 | ACT_AAAH-PDT-like ACT domain of the nonheme iron-d | 99.79 | |
| TIGR01268 | 436 | Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra | 99.7 | |
| TIGR01270 | 464 | Trp_5_monoox tryptophan 5-monooxygenase, tetrameri | 99.58 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 98.74 | |
| TIGR01269 | 457 | Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. | 98.62 | |
| TIGR01807 | 76 | CM_P2 chorismate mutase domain of proteobacterial | 98.56 | |
| TIGR01801 | 102 | CM_A chorismate mutase domain of gram positive Aro | 98.5 | |
| TIGR01805 | 81 | CM_mono_grmpos monofunctional chorismate mutase, g | 98.46 | |
| TIGR01797 | 83 | CM_P_1 chorismate mutase domain of proteobacterial | 98.43 | |
| PRK07248 | 87 | hypothetical protein; Provisional | 98.41 | |
| KOG3820 | 461 | consensus Aromatic amino acid hydroxylase [Amino a | 98.32 | |
| TIGR01803 | 82 | CM-like chorismate mutase related enzymes. This su | 98.26 | |
| TIGR01799 | 83 | CM_T chorismate mutase domain of T-protein. This m | 98.2 | |
| PRK07857 | 106 | hypothetical protein; Provisional | 98.2 | |
| TIGR01808 | 74 | CM_M_hiGC-arch monofunctional chorismate mutase, h | 98.18 | |
| cd04886 | 73 | ACT_ThrD-II-like C-terminal ACT domain of biodegra | 98.15 | |
| PRK06285 | 96 | chorismate mutase; Provisional | 98.13 | |
| PRK07075 | 101 | isochorismate-pyruvate lyase; Reviewed | 98.12 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 98.08 | |
| PF01842 | 66 | ACT: ACT domain; InterPro: IPR002912 The ACT domai | 98.06 | |
| TIGR01791 | 83 | CM_archaeal chorismate mutase, archaeal type. This | 98.06 | |
| PF01817 | 81 | CM_2: Chorismate mutase type II; InterPro: IPR0208 | 98.05 | |
| COG1605 | 101 | PheA Chorismate mutase [Amino acid transport and m | 98.03 | |
| PRK06443 | 177 | chorismate mutase; Validated | 98.02 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 98.01 | |
| TIGR01795 | 94 | CM_mono_cladeE monofunctional chorismate mutase, a | 97.83 | |
| PRK09239 | 104 | chorismate mutase; Provisional | 97.83 | |
| smart00830 | 79 | CM_2 Chorismate mutase type II. Chorismate mutase, | 97.78 | |
| TIGR01806 | 114 | CM_mono2 chorismate mutase, putative. This model r | 97.59 | |
| cd04882 | 65 | ACT_Bt0572_2 C-terminal ACT domain of a novel prot | 97.39 | |
| cd04884 | 72 | ACT_CBS C-terminal ACT domain of the cystathionine | 97.39 | |
| cd04878 | 72 | ACT_AHAS N-terminal ACT domain of the Escherichia | 97.26 | |
| cd04874 | 72 | ACT_Af1403 N-terminal ACT domain of the yet unchar | 97.25 | |
| cd04883 | 72 | ACT_AcuB C-terminal ACT domain of the Bacillus sub | 97.23 | |
| PRK06737 | 76 | acetolactate synthase 1 regulatory subunit; Valida | 97.13 | |
| PRK09269 | 193 | chorismate mutase; Provisional | 97.1 | |
| PRK08055 | 181 | chorismate mutase; Provisional | 97.06 | |
| cd02116 | 60 | ACT ACT domains are commonly involved in specifica | 96.94 | |
| PF13710 | 63 | ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. | 96.88 | |
| cd04888 | 76 | ACT_PheB-BS C-terminal ACT domain of a small (~147 | 96.79 | |
| cd04908 | 66 | ACT_Bt0572_1 N-terminal ACT domain of a novel prot | 96.67 | |
| cd04903 | 71 | ACT_LSD C-terminal ACT domain of the L-serine dehy | 96.67 | |
| PRK11152 | 76 | ilvM acetolactate synthase 2 regulatory subunit; P | 96.6 | |
| PRK11895 | 161 | ilvH acetolactate synthase 3 regulatory subunit; R | 96.59 | |
| TIGR00119 | 157 | acolac_sm acetolactate synthase, small subunit. ac | 96.59 | |
| cd04909 | 69 | ACT_PDH-BS C-terminal ACT domain of the monofuncti | 96.57 | |
| PF13291 | 80 | ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. | 96.57 | |
| cd04902 | 73 | ACT_3PGDH-xct C-terminal ACT (regulatory) domain o | 96.57 | |
| cd04879 | 71 | ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te | 96.49 | |
| cd04885 | 68 | ACT_ThrD-I Tandem C-terminal ACT domains of threon | 96.38 | |
| cd04887 | 74 | ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te | 96.34 | |
| CHL00100 | 174 | ilvH acetohydroxyacid synthase small subunit | 96.34 | |
| cd04896 | 75 | ACT_ACR-like_3 ACT domain-containing protein which | 96.29 | |
| PRK13562 | 84 | acetolactate synthase 1 regulatory subunit; Provis | 96.14 | |
| cd04881 | 79 | ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin | 96.02 | |
| PRK08178 | 96 | acetolactate synthase 1 regulatory subunit; Review | 95.95 | |
| PRK04435 | 147 | hypothetical protein; Provisional | 95.88 | |
| cd04901 | 69 | ACT_3PGDH C-terminal ACT (regulatory) domain of D- | 95.87 | |
| cd04906 | 85 | ACT_ThrD-I_1 First of two tandem C-terminal ACT do | 95.76 | |
| PRK08198 | 404 | threonine dehydratase; Provisional | 95.74 | |
| cd04926 | 72 | ACT_ACR_4 C-terminal ACT domain, of a novel type o | 95.73 | |
| cd04873 | 70 | ACT_UUR-ACR-like ACT domains of the bacterial sign | 95.41 | |
| cd04899 | 70 | ACT_ACR-UUR-like_2 C-terminal ACT domains of the b | 95.29 | |
| cd04876 | 71 | ACT_RelA-SpoT ACT domain found C-terminal of the R | 95.28 | |
| cd04895 | 72 | ACT_ACR_1 ACT domain-containing protein which is c | 95.24 | |
| cd04872 | 88 | ACT_1ZPV ACT domain proteins similar to the yet un | 95.19 | |
| PF13740 | 76 | ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. | 95.17 | |
| PRK00194 | 90 | hypothetical protein; Validated | 95.15 | |
| cd04870 | 75 | ACT_PSP_1 CT domains found N-terminal of phosphose | 95.14 | |
| PRK08577 | 136 | hypothetical protein; Provisional | 95.06 | |
| cd04875 | 74 | ACT_F4HF-DF N-terminal ACT domain of formyltetrahy | 95.01 | |
| cd04877 | 74 | ACT_TyrR N-terminal ACT domain of the TyrR protein | 94.98 | |
| TIGR01127 | 380 | ilvA_1Cterm threonine dehydratase, medium form. A | 94.86 | |
| PRK06382 | 406 | threonine dehydratase; Provisional | 94.81 | |
| cd04889 | 56 | ACT_PDH-BS-like C-terminal ACT domain of the monof | 94.8 | |
| COG2061 | 170 | ACT-domain-containing protein, predicted allosteri | 94.51 | |
| PRK08526 | 403 | threonine dehydratase; Provisional | 94.15 | |
| COG4492 | 150 | PheB ACT domain-containing protein [General functi | 93.67 | |
| PRK08639 | 420 | threonine dehydratase; Validated | 93.65 | |
| cd04869 | 81 | ACT_GcvR_2 ACT domains that comprise the Glycine C | 93.53 | |
| PRK07334 | 403 | threonine dehydratase; Provisional | 93.51 | |
| cd04900 | 73 | ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, | 92.41 | |
| cd04897 | 75 | ACT_ACR_3 ACT domain-containing protein which is c | 92.31 | |
| COG4747 | 142 | ACT domain-containing protein [General function pr | 92.04 | |
| cd04893 | 77 | ACT_GcvR_1 ACT domains that comprise the Glycine C | 91.18 | |
| TIGR01124 | 499 | ilvA_2Cterm threonine ammonia-lyase, biosynthetic, | 91.1 | |
| TIGR02079 | 409 | THD1 threonine dehydratase. This model represents | 90.88 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 90.76 | |
| COG2716 | 176 | GcvR Glycine cleavage system regulatory protein [A | 90.23 | |
| cd04927 | 76 | ACT_ACR-like_2 Second ACT domain, of a novel type | 89.74 | |
| cd04935 | 75 | ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK | 89.12 | |
| COG0440 | 163 | IlvH Acetolactate synthase, small (regulatory) sub | 88.88 | |
| cd04912 | 75 | ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter | 88.61 | |
| cd04932 | 75 | ACT_AKiii-LysC-EC_1 ACT domains located C-terminal | 88.38 | |
| COG1707 | 218 | ACT domain-containing protein [General function pr | 88.05 | |
| cd04907 | 81 | ACT_ThrD-I_2 Second of two tandem C-terminal ACT d | 88.02 | |
| PRK13011 | 286 | formyltetrahydrofolate deformylase; Reviewed | 87.59 | |
| COG3830 | 90 | ACT domain-containing protein [Signal transduction | 87.46 | |
| cd08445 | 203 | PBP2_BenM_CatM_CatR The C-terminal substrate bindi | 86.15 | |
| PRK09224 | 504 | threonine dehydratase; Reviewed | 86.14 | |
| cd08417 | 200 | PBP2_Nitroaromatics_like The C-terminal substrate | 86.14 | |
| PRK12483 | 521 | threonine dehydratase; Reviewed | 86.04 | |
| cd04934 | 73 | ACT_AK-Hom3_1 CT domains located C-terminal to the | 85.81 | |
| PLN02550 | 591 | threonine dehydratase | 84.49 | |
| cd04925 | 74 | ACT_ACR_2 ACT domain-containing protein which is c | 83.84 | |
| PRK11151 | 305 | DNA-binding transcriptional regulator OxyR; Provis | 83.62 | |
| cd08411 | 200 | PBP2_OxyR The C-terminal substrate-binding domain | 83.58 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 83.41 | |
| cd04891 | 61 | ACT_AK-LysC-DapG-like_1 ACT domains of the lysine- | 83.05 | |
| PF12974 | 243 | Phosphonate-bd: ABC transporter, phosphonate, peri | 82.71 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 82.44 | |
| TIGR01728 | 288 | SsuA_fam ABC transporter, substrate-binding protei | 80.77 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 80.53 | |
| PRK13010 | 289 | purU formyltetrahydrofolate deformylase; Reviewed | 80.02 |
| >PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-94 Score=723.80 Aligned_cols=332 Identities=31% Similarity=0.439 Sum_probs=304.8
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccCCCC--C--C-chhHHHHHhhhhCC-CCCCccc-------ee-eccCCCCc-----
Q 016702 37 VCRGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLISLP-KPLTVAD-------FT-VTPNDGTK----- 97 (384)
Q Consensus 37 ~~~~~il~LLn~Ra~~a~eig~~K~~~~--~--~-RE~~il~~~~~~n~-GPL~~e~-------i~-~s~~~~~~----- 97 (384)
-+|.+|++||+||++++.+||++|++.| + + ||+++|+++...+. ++++.+. || .|+..|..
T Consensus 16 ~ID~~ii~Ll~~R~~~~~~I~~~K~~~~~pi~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~ii~~S~~~Q~~~~~~~ 95 (386)
T PRK10622 16 ALDEKLLALLAERRELAVEVAKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQH 95 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 8999999999999999999999999988 3 4 99999999998886 7787753 34 34444433
Q ss_pred --------eEEEEECCCCcHHHHHHHHHCCC----CcccCCCCHHHHHHHHHhCCCCeEEEeeecccccccccccccccc
Q 016702 98 --------VRISFKGLPGSFSEDAALKAYPK----CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLR 165 (384)
Q Consensus 98 --------~~Va~LGP~GTfS~~AA~~~f~~----~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~ 165 (384)
++||||||+|||||+||+++|+. ...+||+||++||++|++|++||||||||||++|+|.+|||+|.+
T Consensus 96 ~~~~~~~~~~va~lGp~GtfSh~Aa~~~~~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~DlL~~ 175 (386)
T PRK10622 96 LNKTNPHSARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVLPIENTSSGAINDVYDLLQH 175 (386)
T ss_pred ccccccccceEEEECCCCcHHHHHHHHhhccccccccccCCCCHHHHHHHHHCCCCCEEEEEEecCCceehHHHHHHHhc
Confidence 78999999999999999999863 234589999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEEeeeeeeecCCCCCcCCccEEEecHHHHHHHHHHHHhc-CCeEEecCCHHHHHHHHHhcCCCCeEEEcCH
Q 016702 166 HRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQL-GVARENVDDTASAAQYVASNGLRDAGAVASA 244 (384)
Q Consensus 166 ~~l~I~gEi~l~I~h~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~~-~~~~i~~~STA~AA~~v~~~~~~~~AAIas~ 244 (384)
++++|+||+.+||+|||++.++.++++|++||||||||+||++||+++ +++.++++|||+||+++++.++++.|||||+
T Consensus 176 ~~l~I~~E~~l~I~h~Ll~~~~~~l~~I~~V~SHpqal~QC~~fL~~~p~~~~~~~~sTa~Aa~~v~~~~~~~~AAI~s~ 255 (386)
T PRK10622 176 TSLSIVGEMTLPIDHCVLVSGTTDLSTIETVYSHPQPFQQCSQFLNRYPHWKIEYTESTAAAMEKVAQANSPHVAALGSE 255 (386)
T ss_pred CCCEEEEEEEEEEEEEEecCCCCCHHHCeEEEEehHHHHHHHHHHHHCCCceEEEcCChHHHHHHHHhcCCCCEEEECCH
Confidence 999999999999999999999999999999999999999999999997 7899999999999999998777789999999
Q ss_pred HHHHHcCCceeeccccCCCCCeeEEEEEeeCCCCCCCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCC
Q 016702 245 RAAEIYGLNILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRK 324 (384)
Q Consensus 245 ~aA~~ygL~il~~~I~D~~~N~TRF~vi~~~~~~~~~~~~~Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~ 324 (384)
.||++|||+||+++|||.++|+|||+||++++..++....+||||+|+++|+||+|+++|++|+.+|||||||||||.++
T Consensus 256 ~aa~~ygL~vl~~~I~D~~~N~TRF~vi~~~~~~~~~~~~~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~ 335 (386)
T PRK10622 256 AGGALYGLQVLERNLANQQQNITRFIVLARKAINVSDQVPAKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHG 335 (386)
T ss_pred HHHHHcCCcChhhcCcCCccccceEEEEecCCCCCCCCCCCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCC
Confidence 99999999999999999999999999999987433333346999999999999999999999999999999999999998
Q ss_pred CCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHHHHhcCceEEEccccCCC
Q 016702 325 RPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDA 382 (384)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L~~~~~~vkvLGsYp~~~ 382 (384)
.+ |+|+||||++||.+|+.++++|++|++.+.++|+|||||...
T Consensus 336 ~~--------------~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~~~kvLGsYp~~~ 379 (386)
T PRK10622 336 NP--------------WEEMFYLDVQANLRSAEMQKALKELGEITRSLKVLGCYPSEN 379 (386)
T ss_pred CC--------------ceEEEEEEEeCCCCCHHHHHHHHHHHHhcCcEEEeeeecCCc
Confidence 75 999999999999999999999999999999999999999763
|
|
| >COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11899 prephenate dehydratase; Provisional | Back alignment and domain information |
|---|
| >PLN02317 arogenate dehydratase | Back alignment and domain information |
|---|
| >PRK11898 prephenate dehydratase; Provisional | Back alignment and domain information |
|---|
| >KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF00800 PDT: Prephenate dehydratase Caution this is only a partial structure | Back alignment and domain information |
|---|
| >PRK06034 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
| >cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) | Back alignment and domain information |
|---|
| >cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH) | Back alignment and domain information |
|---|
| >cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme | Back alignment and domain information |
|---|
| >cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes | Back alignment and domain information |
|---|
| >cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
| >TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form | Back alignment and domain information |
|---|
| >TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric | Back alignment and domain information |
|---|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric | Back alignment and domain information |
|---|
| >TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2 | Back alignment and domain information |
|---|
| >TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein | Back alignment and domain information |
|---|
| >TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2 | Back alignment and domain information |
|---|
| >TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1 | Back alignment and domain information |
|---|
| >PRK07248 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR01803 CM-like chorismate mutase related enzymes | Back alignment and domain information |
|---|
| >TIGR01799 CM_T chorismate mutase domain of T-protein | Back alignment and domain information |
|---|
| >PRK07857 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type | Back alignment and domain information |
|---|
| >cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains | Back alignment and domain information |
|---|
| >PRK06285 chorismate mutase; Provisional | Back alignment and domain information |
|---|
| >PRK07075 isochorismate-pyruvate lyase; Reviewed | Back alignment and domain information |
|---|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold | Back alignment and domain information |
|---|
| >TIGR01791 CM_archaeal chorismate mutase, archaeal type | Back alignment and domain information |
|---|
| >PF01817 CM_2: Chorismate mutase type II; InterPro: IPR020822 Chorismate mutase, 5 | Back alignment and domain information |
|---|
| >COG1605 PheA Chorismate mutase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK06443 chorismate mutase; Validated | Back alignment and domain information |
|---|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type | Back alignment and domain information |
|---|
| >PRK09239 chorismate mutase; Provisional | Back alignment and domain information |
|---|
| >smart00830 CM_2 Chorismate mutase type II | Back alignment and domain information |
|---|
| >TIGR01806 CM_mono2 chorismate mutase, putative | Back alignment and domain information |
|---|
| >cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains | Back alignment and domain information |
|---|
| >cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria | Back alignment and domain information |
|---|
| >cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) | Back alignment and domain information |
|---|
| >cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a | Back alignment and domain information |
|---|
| >cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB | Back alignment and domain information |
|---|
| >PRK06737 acetolactate synthase 1 regulatory subunit; Validated | Back alignment and domain information |
|---|
| >PRK09269 chorismate mutase; Provisional | Back alignment and domain information |
|---|
| >PRK08055 chorismate mutase; Provisional | Back alignment and domain information |
|---|
| >cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
| >PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B | Back alignment and domain information |
|---|
| >cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a | Back alignment and domain information |
|---|
| >cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains | Back alignment and domain information |
|---|
| >cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
| >PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR00119 acolac_sm acetolactate synthase, small subunit | Back alignment and domain information |
|---|
| >cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) | Back alignment and domain information |
|---|
| >PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A | Back alignment and domain information |
|---|
| >cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
| >cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
| >cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
| >cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains | Back alignment and domain information |
|---|
| >CHL00100 ilvH acetohydroxyacid synthase small subunit | Back alignment and domain information |
|---|
| >cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >PRK13562 acetolactate synthase 1 regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains | Back alignment and domain information |
|---|
| >PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK04435 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria | Back alignment and domain information |
|---|
| >cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
| >PRK08198 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD | Back alignment and domain information |
|---|
| >cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
| >cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains | Back alignment and domain information |
|---|
| >cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein | Back alignment and domain information |
|---|
| >PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A | Back alignment and domain information |
|---|
| >PRK00194 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) | Back alignment and domain information |
|---|
| >PRK08577 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) | Back alignment and domain information |
|---|
| >cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein | Back alignment and domain information |
|---|
| >TIGR01127 ilvA_1Cterm threonine dehydratase, medium form | Back alignment and domain information |
|---|
| >PRK06382 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate | Back alignment and domain information |
|---|
| >COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK08526 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >COG4492 PheB ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK08639 threonine dehydratase; Validated | Back alignment and domain information |
|---|
| >cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
| >PRK07334 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
| >cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >COG4747 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
| >TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
| >TIGR02079 THD1 threonine dehydratase | Back alignment and domain information |
|---|
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
| >COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein | Back alignment and domain information |
|---|
| >COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
| >cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
| >COG1707 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
| >PRK13011 formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
| >COG3830 ACT domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd08445 PBP2_BenM_CatM_CatR The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK09224 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
| >cd08417 PBP2_Nitroaromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK12483 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
| >cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains | Back alignment and domain information |
|---|
| >PLN02550 threonine dehydratase | Back alignment and domain information |
|---|
| >cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >PRK11151 DNA-binding transcriptional regulator OxyR; Provisional | Back alignment and domain information |
|---|
| >cd08411 PBP2_OxyR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily | Back alignment and domain information |
|---|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins | Back alignment and domain information |
|---|
| >PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A | Back alignment and domain information |
|---|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family | Back alignment and domain information |
|---|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK13010 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 384 | ||||
| 2qmx_B | 283 | The Crystal Structure Of L-Phe Inhibited Prephenate | 2e-52 | ||
| 3mwb_A | 313 | The Crystal Structure Of Prephenate Dehydratase In | 1e-26 | ||
| 2qmw_A | 267 | The Crystal Structure Of The Prephenate Dehydratase | 1e-13 | ||
| 3luy_A | 329 | Putative Chorismate Mutase From Bifidobacterium Ado | 3e-06 |
| >pdb|2QMX|B Chain B, The Crystal Structure Of L-Phe Inhibited Prephenate Dehydratase From Chlorobium Tepidum Tls Length = 283 | Back alignment and structure |
|
| >pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex With L-Phe From Arthrobacter Aurescens To 2.0a Length = 313 | Back alignment and structure |
| >pdb|2QMW|A Chain A, The Crystal Structure Of The Prephenate Dehydratase (Pdt) From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 267 | Back alignment and structure |
| >pdb|3LUY|A Chain A, Putative Chorismate Mutase From Bifidobacterium Adolescentis Length = 329 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls} Length = 283 | Back alignment and structure |
|---|
Score = 390 bits (1004), Expect = e-136
Identities = 129/296 (43%), Positives = 169/296 (57%), Gaps = 25/296 (8%)
Query: 93 NDGTKVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSS 152
N T I+++G PG++SE AAL+ E +PC+ F+D F AV AD AV+PIENS
Sbjct: 2 NAMTNWLIAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSL 58
Query: 153 SGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALA-SSDIVLT 211
GSIH+NYDLLLR + I+ E + CLL LPG + + +SHPQAL + T
Sbjct: 59 GGSIHQNYDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAMSHPQALVQCHNFFAT 118
Query: 212 QLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLV 271
+ E DTA +A+ VA + + A A+AS RA E+YGL+IL + + DE NITRF
Sbjct: 119 HPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFC 178
Query: 272 LARDPIIPRTDKLF-------KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRK 324
+A + + KTSIVF L G LF+ALA FALR I+LTKIESRP RK
Sbjct: 179 IAHENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRK 238
Query: 325 RPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPM 380
+ F+YLFY DF D NAL +L+EFAT ++VLG Y +
Sbjct: 239 KA--------------FEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGV 280
|
| >3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens} Length = 313 | Back alignment and structure |
|---|
| >2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3 Length = 267 | Back alignment and structure |
|---|
| >3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis} Length = 329 | Back alignment and structure |
|---|
| >1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A Length = 429 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 384 | |||
| 2qmx_A | 283 | Prephenate dehydratase; APC86053, L-Phe inhibition | 100.0 | |
| 3mwb_A | 313 | Prephenate dehydratase; L-Phe, PSI, MCSG, structur | 100.0 | |
| 2qmw_A | 267 | PDT, prephenate dehydratase; APC85812, prephenate | 100.0 | |
| 3luy_A | 329 | Probable chorismate mutase; structural genomics, A | 100.0 | |
| 1phz_A | 429 | Protein (phenylalanine hydroxylase); aromatic amin | 99.82 | |
| 2d8d_A | 90 | Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase | 98.62 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 98.3 | |
| 1ecm_A | 109 | Endo-oxabicyclic transition state analogue; P-prot | 98.24 | |
| 3ret_A | 101 | Salicylate biosynthesis protein PCHB; intertwined | 98.19 | |
| 2vkl_A | 90 | RV0948C/MT0975; helical, intracellular, chorismate | 98.12 | |
| 3rmi_A | 114 | Chorismate mutase protein; emerald biostructures, | 98.11 | |
| 1ybz_A | 91 | Chorismate mutase; conserved hypothetical protein, | 98.03 | |
| 2gtv_X | 104 | CM, chorismate mutase; four-helix bundle, isomeras | 97.94 | |
| 2gbb_A | 156 | Putative chorismate mutase; alpha helical bundle, | 97.6 | |
| 2fp1_A | 166 | Chorismate mutase; alpha-helical, isomerase; 1.55A | 97.48 | |
| 2ko1_A | 88 | CTR148A, GTP pyrophosphokinase; homodimer, alpha+b | 96.94 | |
| 1zpv_A | 91 | ACT domain protein; structural genomics, PSI, prot | 96.58 | |
| 2f1f_A | 164 | Acetolactate synthase isozyme III small subunit; f | 96.33 | |
| 2pc6_A | 165 | Probable acetolactate synthase isozyme III (small; | 96.11 | |
| 2fgc_A | 193 | Acetolactate synthase, small subunit; regulatory s | 95.95 | |
| 1wdn_A | 226 | GLNBP, glutamine binding protein; closed form, com | 93.3 | |
| 2jhe_A | 190 | Transcription regulator TYRR; aromatic hydrocarbon | 93.29 | |
| 1y7p_A | 223 | Hypothetical protein AF1403; structural genomics, | 92.87 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 92.2 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 91.71 | |
| 3h7m_A | 234 | Sensor protein; histidine kinase sensor domain, ki | 91.14 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 91.03 | |
| 3mpk_A | 267 | Virulence sensor protein BVGS; venus flytrap, sens | 91.02 | |
| 1xt8_A | 292 | Putative amino-acid transporter periplasmic solut | 90.63 | |
| 4f3p_A | 249 | Glutamine-binding periplasmic protein; ssgcid, str | 90.6 | |
| 3kzg_A | 237 | Arginine 3RD transport system periplasmic binding | 90.5 | |
| 3k4u_A | 245 | Binding component of ABC transporter; structural g | 90.29 | |
| 4i62_A | 269 | Amino acid ABC transporter, periplasmic amino ACI | 86.14 | |
| 3del_B | 242 | Arginine binding protein; alpha and beta protein ( | 86.03 | |
| 2y7i_A | 229 | STM4351; arginine-binding protein; HET: ARG; 1.90A | 85.75 | |
| 2nyi_A | 195 | Unknown protein; protein structure initiative, PSI | 85.34 | |
| 3kbr_A | 239 | Cyclohexadienyl dehydratase; pseudomonas aeruginos | 85.31 | |
| 3lou_A | 292 | Formyltetrahydrofolate deformylase; structural gen | 84.89 | |
| 4h5g_A | 243 | Amino acid ABC superfamily ATP binding cassette tr | 84.53 | |
| 3i6v_A | 232 | Periplasmic His/Glu/Gln/Arg/opine family-binding; | 84.12 | |
| 2yjp_A | 291 | Putative ABC transporter, periplasmic binding Pro | 83.82 | |
| 3qax_A | 268 | Probable ABC transporter arginine-binding protein; | 83.76 | |
| 2pfz_A | 301 | Putative exported protein; extracytoplasmic solute | 83.67 | |
| 3tql_A | 227 | Arginine-binding protein; transport and binding pr | 83.62 | |
| 3obi_A | 288 | Formyltetrahydrofolate deformylase; structural gen | 82.44 | |
| 3o1l_A | 302 | Formyltetrahydrofolate deformylase; structural gen | 81.03 | |
| 2vha_A | 287 | Periplasmic binding transport protein; periplasmic | 80.81 | |
| 1lst_A | 239 | Lysine, arginine, ornithine-binding protein; amino | 80.75 | |
| 2qpq_A | 301 | Protein BUG27; alpha/beta domain, venus flytrap, t | 80.51 | |
| 3n0v_A | 286 | Formyltetrahydrofolate deformylase; formyl transfe | 80.27 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 80.13 |
| >2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-91 Score=672.92 Aligned_cols=267 Identities=48% Similarity=0.726 Sum_probs=255.6
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEE
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL 176 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l 176 (384)
+++||||||+|||||+||+++| +++||+||+|||++|++|++||||||||||++|+|.+|||+|.+++++|+||+.+
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~f---~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~l 82 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRFG---EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVVILAETFV 82 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS---EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEEEEEEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHh---HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhcCCcEEEEEEEE
Confidence 4699999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCCcCCccEEEecHHHHHHHHHHHHhc-CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHcCCcee
Q 016702 177 AANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQL-GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNIL 255 (384)
Q Consensus 177 ~I~h~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~~-~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ygL~il 255 (384)
||+|||++++|.++++|++||||||||+||++||+++ +++.+++.|||+||++++++++++.|||||+.||++|||+||
T Consensus 83 ~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~~p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~AA~~ygL~il 162 (283)
T 2qmx_A 83 KVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATHPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDIL 162 (283)
T ss_dssp ECCCEEEECSSCCTTTCCEEEECHHHHHHTHHHHHHCTTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHHHHHTTCEEE
T ss_pred eeeeeEecCCCCChhhCCEEEEeHHHHHHHHHHHHHCCCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHHHHHcCCcee
Confidence 9999999999999999999999999999999999997 899999999999999999987788999999999999999999
Q ss_pred eccccCCCCCeeEEEEEeeCCCC--------CCCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCC
Q 016702 256 ADRIQDEPDNITRFLVLARDPII--------PRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPL 327 (384)
Q Consensus 256 ~~~I~D~~~N~TRF~vi~~~~~~--------~~~~~~~Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~ 327 (384)
+++|||.++|+|||+||++++.. +. .+.+||||+|+++|+||+|+++|++|+.+|||||||||||+++.+
T Consensus 163 ~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~-~~~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~- 240 (283)
T 2qmx_A 163 KENLADEEWNITRFFCIAHENNPDISHLKVRPD-VARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKA- 240 (283)
T ss_dssp ESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCE-EEEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSST-
T ss_pred cccCcCCCCCeeeEEEEecCccccccccccCCC-CCCceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCC-
Confidence 99999999999999999998754 22 125799999999999999999999999999999999999999864
Q ss_pred ccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHHHHhcCceEEEccccCC
Q 016702 328 RVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMD 381 (384)
Q Consensus 328 ~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L~~~~~~vkvLGsYp~~ 381 (384)
|+|.||||++||.+|++++++|++|++.+.++|+|||||..
T Consensus 241 -------------~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~ 281 (283)
T 2qmx_A 241 -------------FEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGVV 281 (283)
T ss_dssp -------------TEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEEEEEEEEE
T ss_pred -------------cceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEEeeeeeCC
Confidence 99999999999999999999999999999999999999975
|
| >3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens} | Back alignment and structure |
|---|
| >2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3 | Back alignment and structure |
|---|
| >3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis} | Back alignment and structure |
|---|
| >1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A | Back alignment and structure |
|---|
| >2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A | Back alignment and structure |
|---|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
| >1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1 | Back alignment and structure |
|---|
| >3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A | Back alignment and structure |
|---|
| >2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C* | Back alignment and structure |
|---|
| >3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae} | Back alignment and structure |
|---|
| >1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1 | Back alignment and structure |
|---|
| >2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3 | Back alignment and structure |
|---|
| >2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET: CIT; 2.10A {Yersinia pestis biovar microtus str} | Back alignment and structure |
|---|
| >2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A* 2ao2_A* | Back alignment and structure |
|---|
| >2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A | Back alignment and structure |
|---|
| >1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 | Back alignment and structure |
|---|
| >2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
| >2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
| >2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
| >1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A | Back alignment and structure |
|---|
| >2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
| >1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 | Back alignment and structure |
|---|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
| >3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
| >3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A | Back alignment and structure |
|---|
| >1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 | Back alignment and structure |
|---|
| >4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
| >3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
|---|
| >3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} | Back alignment and structure |
|---|
| >4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* | Back alignment and structure |
|---|
| >3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
| >3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* | Back alignment and structure |
|---|
| >2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I} | Back alignment and structure |
|---|
| >3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
| >3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* | Back alignment and structure |
|---|
| >1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* | Back alignment and structure |
|---|
| >2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis} | Back alignment and structure |
|---|
| >3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} | Back alignment and structure |
|---|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 384 | ||||
| d2qmwa1 | 184 | c.94.1.1 (A:1-184) Prephenate dehydratase {Staphyl | 3e-45 | |
| d2qmwa2 | 80 | d.58.18.3 (A:185-264) Prephenate dehydratase C-ter | 5e-22 | |
| d1phza1 | 97 | d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-t | 2e-19 |
| >d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus aureus [TaxId: 1280]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Prephenate dehydratase species: Staphylococcus aureus [TaxId: 1280]
Score = 151 bits (383), Expect = 3e-45
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 6/184 (3%)
Query: 99 RISFKGLPGSFSEDAALKAYPKCET--VPCDEFEDTFKAVELWLADKAVLPIENSSSGSI 156
++ + G G+FS A + + + E P + KAV V+PIENS G+I
Sbjct: 2 QLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTI 61
Query: 157 HRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVA 216
+ D L + + GE++L NF L +K+V S A++ + + Q
Sbjct: 62 NIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFD 121
Query: 217 RENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARDP 276
+ VD T + + A+A + E YG + I+D P N+TRFLV+
Sbjct: 122 YDYVDSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQ 177
Query: 277 IIPR 280
+
Sbjct: 178 QFDQ 181
|
| >d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 80 | Back information, alignment and structure |
|---|
| >d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 384 | |||
| d2qmwa1 | 184 | Prephenate dehydratase {Staphylococcus aureus [Tax | 100.0 | |
| d2qmwa2 | 80 | Prephenate dehydratase C-terminal domain {Staphylo | 99.92 | |
| d1phza1 | 97 | Phenylalanine hydroxylase N-terminal domain {Rat ( | 99.89 | |
| d2d8da1 | 80 | Chorismate mutase domain of P-protein {Thermus the | 98.37 | |
| d1ybza1 | 74 | mono-domain chorismate mutase {Pyrococcus furiosus | 98.1 | |
| d1ecma_ | 91 | Chorismate mutase domain of P-protein {Escherichia | 98.04 | |
| d2h9da1 | 94 | Salicylate biosynthesis protein PchB {Pseudomonas | 97.83 | |
| d2gtvx1 | 93 | Chorismate mutase-like protein MJ0246 {Methanococc | 97.5 | |
| d2f1fa1 | 76 | Acetolactate synthase small subunit, IlvH {Escheri | 97.24 | |
| d1y7pa2 | 77 | Hypothetical protein AF1403, N-terminal domain {Ar | 97.2 | |
| d2fgca2 | 78 | Acetolactate synthase small subunit, IlvH {Thermot | 97.09 | |
| d2pc6a2 | 77 | Acetolactate synthase small subunit, IlvH {Nitroso | 97.08 | |
| d1zpva1 | 83 | UPF0237 protein SP0238 {Streptococcus pneumoniae [ | 96.73 | |
| d1sc6a3 | 84 | Phosphoglycerate dehydrogenase, regulatory (C-term | 96.72 | |
| d1ygya3 | 78 | Phosphoglycerate dehydrogenase, regulatory (C-term | 96.55 | |
| d2fp1a1 | 165 | Secreted chorismate mutase {Mycobacterium tubercul | 96.42 | |
| d2f06a2 | 70 | Hypothetical protein BT0572 {Bacteroides thetaiota | 96.34 | |
| d2f06a1 | 71 | Hypothetical protein BT0572 {Bacteroides thetaiota | 96.13 | |
| d1u8sa1 | 86 | putative transcriptional repressor VC2159 {Vibrio | 96.04 | |
| d1u8sa2 | 93 | putative transcriptional repressor VC2159 {Vibrio | 94.0 | |
| d1wdna_ | 223 | Glutamine-binding protein {Escherichia coli [TaxId | 89.46 | |
| d1xt8a1 | 248 | Putative amino-acid transporter CjaA {Campylobacte | 88.73 | |
| d1tdja2 | 88 | Allosteric threonine deaminase C-terminal domain { | 81.94 |
| >d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Prephenate dehydratase species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.6e-60 Score=433.32 Aligned_cols=177 Identities=27% Similarity=0.371 Sum_probs=168.8
Q ss_pred eEEEEECCCCcHHHHHHHHHCCC--CcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEE
Q 016702 98 VRISFKGLPGSFSEDAALKAYPK--CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQ 175 (384)
Q Consensus 98 ~~Va~LGP~GTfS~~AA~~~f~~--~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~ 175 (384)
|||+||||+|||||+||+++|+. .+++||.||+|||++|++|++||||||||||++|+|.+|||+|.+++++|+||+.
T Consensus 1 mki~yLGp~GtfS~~Aa~~~f~~~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~D~L~~~~~~I~~E~~ 80 (184)
T d2qmwa1 1 MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFAHGEIR 80 (184)
T ss_dssp CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEEEEEEE
T ss_pred CEEEEeCCCChHHHHHHHHhcccCCceeeecCCHHHHHHHHHcCCCceeEEEeecccccchHHHHHhhhccCceeEeeec
Confidence 79999999999999999999985 5789999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeeeecCCCCCcCCccEEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHcCCcee
Q 016702 176 LAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNIL 255 (384)
Q Consensus 176 l~I~h~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ygL~il 255 (384)
+||+|||+++++.++++|++|||||||++||++||+++.++.+.++||++||+.+. ++.|||||+.||++|||+||
T Consensus 81 l~I~h~Ll~~~~~~l~~I~~V~SHpqal~QC~~~l~~~~~~~~~~~sta~aa~~~~----~~~aAIas~~aa~~ygL~il 156 (184)
T d2qmwa1 81 LDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVDSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPI 156 (184)
T ss_dssp EECCEEEECCSSCCSTTCCEEEECHHHHHHSHHHHHHTTCEEEECSSHHHHHHTCB----TTEEEEEETTTSGGGTCCEE
T ss_pred ccchhhhcccccccccccceEEEecchHHHHHHHHHhhccchhhhhhHHHHHhhhh----hhhhccccHhHHHHcCChhh
Confidence 99999999999999999999999999999999999999888889999999998653 46899999999999999999
Q ss_pred eccccCCCCCeeEEEEEeeCCCC
Q 016702 256 ADRIQDEPDNITRFLVLARDPII 278 (384)
Q Consensus 256 ~~~I~D~~~N~TRF~vi~~~~~~ 278 (384)
+++|||.++|+|||+||+|++..
T Consensus 157 ~~~I~D~~~N~TRF~vi~~~~~~ 179 (184)
T d2qmwa1 157 DTHIEDYPHNVTRFLVIKNQQQF 179 (184)
T ss_dssp EECCCSCSCCEEEEEEEESCCCC
T ss_pred hhCCCCCCCCeEeEEEEecCCcC
Confidence 99999999999999999998654
|
| >d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2gtvx1 a.130.1.3 (X:1-93) Chorismate mutase-like protein MJ0246 {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
| >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
| >d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|