Citrus Sinensis ID: 016714

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLFVLHEDFSLYFV
Secondary Structure (PSIPRED)
ccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHccHccHHHHHHHHHHHHHHHccccHHHHHHHHHccEEEEEccEEEEEc
Coil and Loop (DISEMBL)
mslrpstraEVRKKgyktgvdadeaRRRREDNLVEIRKNKREDNLLKKRREglllqpqqqglDASQNAIEKKLEsipsmvqgvwsedpalqLEATTQFRKLLSiersppidevikagvVPRFVEflgrhdmpqLQFEAAWALtnvasgtseHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGnvagdspscrdlvlssGALMPLLAQLNEHSKLSMLRNATWtlsnfcrgkpptpfeqvkpalpILQRLihlndeevLTDACWALsylsdgpndkIQAVIEAGVCPRLVEllmhpsatvlipalrtvgnivtgddaqtqfvidngvlpCLYQLLTQNHKKSIKKEACWTisnitagnraqiqvhdsfhlfvlhedfslyfv
Flexible Loop (DISEMBL)
mslrpstraevrkkgyktgvdadearrrrednlveirknkrednllkkrreglllqpqqqgLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSiersppidevikaGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALgnvagdspSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLFVLHEDFSLYFV
Low Complexity Region (SEG)
MSLRPSTRAEVRKKGYKTGVdadearrrredNLVEIRKNKREDNLLKKRREglllqpqqqglDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLFVLHEDFSLYFV
Disordered region (IsUnstruct)
********************************************************************************QGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLFVLHEDFSLYF*
Disordered Region (DISOPRED)
***************************************************************************IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLFVLHEDFSLYFV
Disordered Region (DISEMBL)
***************YKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLFVLHEDFSLYFV
Disordered Region (DISPRO)
******************GVDADEARRRREDNLVEIRKNKREDNLL*K*******************AIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLFVLHEDFSLYFV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLFVLHEDFSLYFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.945	0.690	0.783	1e-168
Q96321	532	Importin subunit alpha-1	no	no	0.947	0.684	0.765	1e-164
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.950	0.683	0.772	1e-163
O22478	527	Importin subunit alpha OS	N/A	no	0.950	0.692	0.762	1e-163
O04294	531	Importin subunit alpha-2	no	no	0.950	0.687	0.702	1e-149
Q76P29	516	Importin subunit alpha-B	yes	no	0.921	0.686	0.617	1e-122
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.882	0.632	0.575	1e-107
O35345	536	Importin subunit alpha-7	yes	no	0.882	0.632	0.572	1e-106
O94374	539	Importin subunit alpha-2	yes	no	0.916	0.653	0.556	1e-106
O14063	542	Importin subunit alpha-1	no	no	0.919	0.651	0.563	1e-105

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  590 bits (1522), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 286/365 (78%), Positives = 322/365 (88%), Gaps = 2/365 (0%)

Query: 1   MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQ 60
           MSLRPS R EVR+  YK  VDA+E RRRREDN+VEIRK++RE++LLKKRREGL  Q Q  
Sbjct: 1   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGL--QAQAP 58

Query: 61  GLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVP 120
              ++   ++KKLES+P+M+ GV+S+D  LQLEATTQFRKLLSIERSPPI+EVI++GVVP
Sbjct: 59  VPASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 118

Query: 121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQA 180
           RFV+FL R D PQLQFEAAWALTN+ASGTSE+T+VVI+HGAVP+FV+LL S SDDVREQA
Sbjct: 119 RFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA 178

Query: 181 VWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE 240
           VWALGNVAGDSP CRDLVL++GAL+PLLAQLNEH+KLSMLRNATWTLSNFCRGKP   FE
Sbjct: 179 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 238

Query: 241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300
           Q +PALP L RLIH NDEEVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELL+HPS 
Sbjct: 239 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 298

Query: 301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
           +VLIPALRTVGNIVTGDDAQTQ +ID+  LPCL  LLTQN KKSIKKEACWTISNITAGN
Sbjct: 299 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN 358

Query: 361 RAQIQ 365
           + QIQ
Sbjct: 359 KDQIQ 363

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  576 bits (1485), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 280/366 (76%), Positives = 318/366 (86%), Gaps = 2/366 (0%)

Query: 1   MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQ 60
           MSLRP+ + EVR+  YK  VDA+E RRRREDN+VEIRK+KRE++L+KKRREG+  Q  Q 
Sbjct: 1   MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGM--QALQG 58

Query: 61  GLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVP 120
              AS  +++KKL+S+  MV GVWS+DPALQLE+TTQFRKLLSIERSPPI+EVI AGVVP
Sbjct: 59  FPSASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVP 118

Query: 121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQA 180
           RFVEFL + D P +QFEAAWALTN+ASGTS+HT+VVI+H AVP+FVQLL+S SDDVREQA
Sbjct: 119 RFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQA 178

Query: 181 VWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE 240
           VWALGNVAGDSP CRDLVL  GAL+PLL QLNEH+KLSMLRNATWTLSNFCRGKP   F+
Sbjct: 179 VWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFD 238

Query: 241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300
           QVKPALP L+RLIH +DEEVLTDACWALSYLSDG NDKIQ VI+AGV P+LVELL+H S 
Sbjct: 239 QVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSP 298

Query: 301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
           +VLIPALRTVGNIVTGDD QTQ VI++G LPCL  LLTQNHKKSIKKEACWTISNITAGN
Sbjct: 299 SVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGN 358

Query: 361 RAQIQV 366
           + QIQ 
Sbjct: 359 KDQIQT 364

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  575 bits (1481), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 285/369 (77%), Positives = 315/369 (85%), Gaps = 4/369 (1%)

Query: 1   MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGL----LLQ 56
           MSLRPS RAEVR+  YK  VDADE RRRREDN+VEIRK++RE++LLKKRR+GL       
Sbjct: 1   MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAA 60

Query: 57  PQQQGLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA 116
                L A  +A+++KLE +P+MVQ V S+D A+QLEATTQFRKLLSIERSPPI+EVI  
Sbjct: 61  AAASPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINT 120

Query: 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDV 176
           GVVPRF+ FL R D PQLQFEAAWALTN+ASGTS++T+VV+E GAVP+FV+LLSS S+DV
Sbjct: 121 GVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDV 180

Query: 177 REQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 236
           REQAVWALGNVAGDSP CRDLVL+SG L PLL QLNEH+KLSMLRNATWTLSNFCRGKP 
Sbjct: 181 REQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQ 240

Query: 237 TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM 296
             FEQVKPAL  LQRLIH  DEEVLTDACWALSYLSDG NDKIQAVIE+GV PRLVELLM
Sbjct: 241 PNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLM 300

Query: 297 HPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI 356
           HPSA+VLIPALRTVGNIVTGDD QTQ VID+  LPCL  LLT NHKKSIKKEACWTISNI
Sbjct: 301 HPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNI 360

Query: 357 TAGNRAQIQ 365
           TAGNR QIQ
Sbjct: 361 TAGNREQIQ 369

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  573 bits (1478), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 279/366 (76%), Positives = 317/366 (86%), Gaps = 1/366 (0%)

Query: 1   MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQ 60
           MSLRP++R E R+  YK  VDA+E RRRREDN+VEIRKNKRE+NLLKKRREGLL Q QQ 
Sbjct: 1   MSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLL-QAQQF 59

Query: 61  GLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVP 120
              A+ + ++KKLE++P ++ GVWS+D +LQLE TTQFRKLLSIER+PPI+EVI++GVVP
Sbjct: 60  PSTAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVP 119

Query: 121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQA 180
           RFVEFL R D PQLQFEAAWALTN+ASGTSE+T+VVI++G+VP+F++LLSS SDDVREQA
Sbjct: 120 RFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQA 179

Query: 181 VWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE 240
           VWALGN+AGDSP  RDLVL  GAL+ LLAQ NE +KLSMLRNATWTLSNFCRGKP   FE
Sbjct: 180 VWALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFE 239

Query: 241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300
           Q K ALP L RLIH NDEEVLTDACWALSYLSDG NDKIQAVIEAGVC RLVELL+H S 
Sbjct: 240 QTKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSP 299

Query: 301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
           +VLIPALRTVGNIVTGDD QTQ +ID+  LPCL  LLTQN+KKSIKKEACWTISNITAGN
Sbjct: 300 SVLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGN 359

Query: 361 RAQIQV 366
           R QIQ+
Sbjct: 360 RNQIQI 365

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  529 bits (1363), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 257/366 (70%), Positives = 297/366 (81%), Gaps = 1/366 (0%)

Query: 1   MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQ 60
           MSLRPS + EVR+  YK  VDA+E RRRREDNLVEIRKNKRE+NL KKR    +      
Sbjct: 1   MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query: 61  GLDASQNAIEKKL-ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVV 119
           G      +   +L +++P+MV G+WSED   QLEAT   RKLLSIE++PPI+EV+++GVV
Sbjct: 61  GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120

Query: 120 PRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQ 179
           PR V+FL R D P+LQFEAAWALTN+ASGTSE+T V+IE GAVP+F+QLLSS S+DVREQ
Sbjct: 121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180

Query: 180 AVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF 239
           AVWALGNVAGDSP CRDLVLS GA+ PLL+Q NE++KLSMLRNATWTLSNFCRGKPP  F
Sbjct: 181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240

Query: 240 EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS 299
           EQ +PALP+L+RL+   DEEVLTDACWALSYLSD  NDKIQAVIEAGV PRL++LL H S
Sbjct: 241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300

Query: 300 ATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG 359
            +VLIPALRT+GNIVTGDD QTQ V+D   LPCL  LL  N+KKSIKKEACWTISNITAG
Sbjct: 301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360

Query: 360 NRAQIQ 365
           N  QIQ
Sbjct: 361 NADQIQ 366

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  440 bits (1131), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/361 (61%), Positives = 277/361 (76%), Gaps = 7/361 (1%)

Query: 7   TRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQ 66
           ++ E RK  YK  +D+DE+RR+RE+  + IRKNKRE++LLKKR + +   P    +    
Sbjct: 4   SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAV---PGSTPVKVD- 59

Query: 67  NAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFL 126
           + I ++LE +PS+V  + SE+P L L++TT FRKLLSIE+SPPI+EVIK G+VPR V+FL
Sbjct: 60  SLINQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFL 119

Query: 127 GRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGN 186
              D PQLQFEAAWALTN+ASGT E TRVVIE+GA+ +FV LLSS  DDVREQAVWALGN
Sbjct: 120 YMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGN 179

Query: 187 VAGDSPSCRDLVLSSGALMPLLAQLNEHS--KLSMLRNATWTLSNFCRGKPPTPFEQVKP 244
           +AGDS  CRDLVLS  AL PLL+ L   +  K+SM+RNATWTLSNFCRGKP  PFE V+ 
Sbjct: 180 IAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRA 239

Query: 245 ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLI 304
           +LP+L +LI+  DEEVL DACWALSYLSDG N++IQ VI+A VC ++VELL HP+  V  
Sbjct: 240 SLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQT 299

Query: 305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQI 364
           PALRT+GNIVTGDD QTQ V+    L  L  LL Q+ K++I+KEACWTISNITAG++ QI
Sbjct: 300 PALRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQI 358

Query: 365 Q 365
           Q
Sbjct: 359 Q 359

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/346 (57%), Positives = 251/346 (72%), Gaps = 7/346 (2%)

Query: 34  VEIRKNKREDNLLKKRREGLLLQPQQQG----LDASQNAIEKKLESIPSMVQGVWSEDPA 89
           +++RK KRE  L K+R   L+ +         +D+  ++   +      MV+ ++S+DP 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDPD 95

Query: 90  LQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGRHDMPQLQFEAAWALTNVASG 148
           LQL  T +FRKLLS E SPPIDEVI   GVV RFVEFL R++   LQFEAAWALTN+ASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 149 TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLL 208
           TS+ T++VIE GAVP+F++LL+S  +DV+EQAVWALGN+AGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 209 AQLNEHSKLSMLRNATWTLSNFCRGK-PPTPFEQVKPALPILQRLIHLNDEEVLTDACWA 267
             L + ++L+M RNA W LSN CRGK PP  F +V P LP+L RL+  +D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 268 LSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN 327
           LSYLSDGPN+KIQAVI++GVC RLVELLMH    V  PALR VGNIVTGDD QTQ +++ 
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 328 GVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLF 373
             LPCL  LL+ + K+SI+KEACWTISNITAGNRAQIQ     ++F
Sbjct: 336 SALPCLLHLLS-SSKESIRKEACWTISNITAGNRAQIQAVIDANIF 380

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  385 bits (990), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/346 (57%), Positives = 250/346 (72%), Gaps = 7/346 (2%)

Query: 34  VEIRKNKREDNLLKKRREGLLLQPQQQG----LDASQNAIEKKLESIPSMVQGVWSEDPA 89
           +++RK KRE  L K+R   L+ +         +D+  ++   +      MV+ ++S+D  
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 90  LQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGRHDMPQLQFEAAWALTNVASG 148
           LQL  T +FRKLLS E SPPIDEVI   GVV RFVEFL R++   LQFEAAWALTN+ASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 149 TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLL 208
           TS+ T++VIE GAVP+F++LL+S  +DV+EQAVWALGN+AGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNCSILNPLL 215

Query: 209 AQLNEHSKLSMLRNATWTLSNFCRGK-PPTPFEQVKPALPILQRLIHLNDEEVLTDACWA 267
             L + ++L+M RNA W LSN CRGK PP  F +V P LP+L RL+  +D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 268 LSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN 327
           LSYLSDGPN+KIQAVI++GVC RLVELLMH    V  PALR VGNIVTGDD QTQ +++ 
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 328 GVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLF 373
             LPCL  LL+ + K+SI+KEACWTISNITAGNRAQIQ     ++F
Sbjct: 336 SALPCLLHLLS-SSKESIRKEACWTISNITAGNRAQIQAVIDANIF 380

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|O94374|IMA2_SCHPO Importin subunit alpha-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp1 PE=1 SV=1

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/365 (55%), Positives = 258/365 (70%), Gaps = 13/365 (3%)

Query: 8   RAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQ---QQGLDA 64
           R+  + KG      ADE RR+RE+  +EIRK KRE++L K+R    +LQ     ++  D 
Sbjct: 10  RSRFKSKGV---FKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDVEEEADQ 66

Query: 65  SQNAIEKKL-ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFV 123
           SQ  +E+++ +  P +   V S+D  LQL A T+FRK LS E  PPID+VI  GVV RFV
Sbjct: 67  SQVQMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFV 126

Query: 124 EFL-GRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVW 182
           +FL   H +  LQFEAAWALTN+ASGT++ TR+V++ GAVP F+QLLSS   DVREQ VW
Sbjct: 127 QFLESEHHL--LQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVW 184

Query: 183 ALGNVAGDSPSCRDLVLSSGALMPLLAQL-NEHSKLSMLRNATWTLSNFCRGKPPTP-FE 240
           ALGN+AGDS +CRD VL +G L PLL  L +  S +SMLRNATWTLSN CRGK P P + 
Sbjct: 185 ALGNIAGDSSACRDYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWS 244

Query: 241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300
            +  A+PIL +L++  D E++ DACWA+SYLSDGPN+KI A+++ G  PRLVELL  PS 
Sbjct: 245 TISVAVPILAKLLYSEDVEIIVDACWAISYLSDGPNEKIGAILDVGCAPRLVELLSSPSV 304

Query: 301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
            +  PALR+VGNIVTG DAQTQ +ID G L     LL+ + K++I+KEACWTISNITAGN
Sbjct: 305 NIQTPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLLS-HQKENIRKEACWTISNITAGN 363

Query: 361 RAQIQ 365
             QIQ
Sbjct: 364 TQQIQ 368

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. Active directional transport is assured by both, a Phe-Gly (FG) repeat affinity gradient for these transport factors across the NPC and a transport cofactor concentration gradient across the nuclear envelope. Involved in nuclear protein import. Required for efficient nuclera import of both an SV40 nuclear localization signal-containing reporter protein and the pap1 component of the stress response MAP kinase pathway. Required for proper mitotic progression.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O14063|IMA1_SCHPO Importin subunit alpha-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut15 PE=1 SV=1

 Score =  383 bits (983), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/362 (56%), Positives = 260/362 (71%), Gaps = 9/362 (2%)

Query: 10  EVRKKGYKTG--VDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQ- 66
           E R++ YK      ADE RRRRE   +EIRK KRE+NL K+R    + +P ++ +   Q 
Sbjct: 10  EHRRQNYKGKGTFQADELRRRRETQQIEIRKQKREENLNKRRNLVDVQEPAEETIPLEQD 69

Query: 67  --NAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVE 124
             N +E +L+ +P +++ ++S+D   Q++AT +FRK LS E +PPI +VI AGVVPRFVE
Sbjct: 70  KENDLELELQ-LPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVPRFVE 128

Query: 125 FLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWAL 184
           FL  H+   L+FEA+WALTNVASG+S  T VV+E  AVP+FV LLSS   DVREQAVWAL
Sbjct: 129 FLS-HENNLLKFEASWALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQAVWAL 187

Query: 185 GNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVK 243
           GN+AGDSP CRD VL  G L PLL  +  + +LSMLRN+TWTLSN CRGK P P +  + 
Sbjct: 188 GNIAGDSPMCRDHVLQCGVLEPLLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDWNSIS 247

Query: 244 PALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVL 303
             +P+L +LI+  DE+VL DA WA+SYLSDG N+KIQA+I+AG+  RLVELLMHPSA V 
Sbjct: 248 QVIPVLSKLIYTLDEDVLVDALWAISYLSDGANEKIQAIIDAGIPRRLVELLMHPSAQVQ 307

Query: 304 IPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQ 363
            PALR+VGNIVTGDD QTQ +I+ G L      L  + +  ++KEACWTISNITAGN +Q
Sbjct: 308 TPALRSVGNIVTGDDVQTQVIINCGALS-ALLSLLSSPRDGVRKEACWTISNITAGNSSQ 366

Query: 364 IQ 365
           IQ
Sbjct: 367 IQ 368

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs. Has an essential role in mitotic chromosome condensation. Involved in nuclear protein import. Required for efficient nuclear import of both an SV40 nuclear localization signal-containing reporter protein and the pap1 component of the stress response MAP kinase pathway. Required for proper mitotic progression.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
256016311	535	importin alpha [Citrus sinensis]	0.934	0.671	0.994	0.0
13752560	535	importin alpha 1 [Capsicum annuum]	0.950	0.682	0.907	0.0
225450549	535	PREDICTED: importin subunit alpha-1 [Vit	0.950	0.682	0.904	0.0
224125002	537	predicted protein [Populus trichocarpa]	0.950	0.679	0.902	0.0
449453998	537	PREDICTED: importin subunit alpha-1-like	0.947	0.677	0.896	0.0
147818271	523	hypothetical protein VITISV_026717 [Viti	0.919	0.674	0.871	0.0
297843718	538	hypothetical protein ARALYDRAFT_888168 [	0.950	0.678	0.861	0.0
15217478	538	importin alpha isoform 4 [Arabidopsis th	0.950	0.678	0.856	0.0
126572488	542	importin alpha-like protein [Brassica na	0.950	0.673	0.860	0.0
2959322	528	Importin alpha-like protein [Arabidopsis	0.924	0.672	0.842	1e-173

>gi|256016311|gb|ACU56981.1| importin alpha [Citrus sinensis]

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/365 (99%), Positives = 363/365 (99%)

Query: 1   MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQ 60
           MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQ
Sbjct: 1   MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQ 60

Query: 61  GLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVP 120
            LDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVP
Sbjct: 61  LLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVP 120

Query: 121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQA 180
           RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQA
Sbjct: 121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQA 180

Query: 181 VWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE 240
           VWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE
Sbjct: 181 VWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE 240

Query: 241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300
           QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA
Sbjct: 241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300

Query: 301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
           TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLT NHKKSIKKEACWTISNITAGN
Sbjct: 301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTHNHKKSIKKEACWTISNITAGN 360

Query: 361 RAQIQ 365
           RAQIQ
Sbjct: 361 RAQIQ 365

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13752560|gb|AAK38726.1|AF369706_1 importin alpha 1 [Capsicum annuum]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/367 (90%), Positives = 348/367 (94%), Gaps = 2/367 (0%)

Query: 1   MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQ 60
           MSLRPSTR EVRKK YK GVDADEARRRREDNLVEIRKNKREDNLLKKRREGLL   QQQ
Sbjct: 1   MSLRPSTRTEVRKKAYKIGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLFHSQQQ 60

Query: 61  GLDASQ--NAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGV 118
             DA+Q  +AIEK+LESIP MVQGVWSEDPA Q+EATT FRKLLSIERSPPIDEVIKAGV
Sbjct: 61  LPDAAQTPDAIEKRLESIPVMVQGVWSEDPAAQIEATTHFRKLLSIERSPPIDEVIKAGV 120

Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
           +PRFVEFLGRHD+PQLQFEAAWALTNVASGTSEHTRVVI+HGAVPMFVQLLSS SDDVRE
Sbjct: 121 IPRFVEFLGRHDLPQLQFEAAWALTNVASGTSEHTRVVIDHGAVPMFVQLLSSASDDVRE 180

Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
           QAVWALGNVAGDSPSCRDLVLS GALMPLL+QLNEHSKLSMLRNATWTLSNFCRGKPPTP
Sbjct: 181 QAVWALGNVAGDSPSCRDLVLSQGALMPLLSQLNEHSKLSMLRNATWTLSNFCRGKPPTP 240

Query: 239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP 298
           FE VKPALP+LQ+LIH++DEEVLTDACWALSYLSDGPNDKIQAVI+AGVCPRLVELL+HP
Sbjct: 241 FEAVKPALPVLQQLIHMSDEEVLTDACWALSYLSDGPNDKIQAVIDAGVCPRLVELLLHP 300

Query: 299 SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358
           S TVLIPALRT GNIVTGDDAQTQ+VIDN VLPCLYQLLTQNHKKSIKKEACWTISNITA
Sbjct: 301 SPTVLIPALRTAGNIVTGDDAQTQYVIDNRVLPCLYQLLTQNHKKSIKKEACWTISNITA 360

Query: 359 GNRAQIQ 365
           GNRAQIQ
Sbjct: 361 GNRAQIQ 367

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450549|ref|XP_002281670.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296089795|emb|CBI39614.3| unnamed protein product [Vitis vinifera]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/367 (90%), Positives = 347/367 (94%), Gaps = 2/367 (0%)

Query: 1   MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQ 60
           MSLRP +R +VRKK YKTGVDA+EARRRREDNLVEIRKNKREDNLLKKRREGL+LQ QQ 
Sbjct: 1   MSLRPGSRTDVRKKSYKTGVDAEEARRRREDNLVEIRKNKREDNLLKKRREGLILQSQQF 60

Query: 61  GLDASQNA--IEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGV 118
             DASQ    +EK+LESI  MVQGVWS+DPA QLEATTQFRKLLSIERSPPIDEVIKAGV
Sbjct: 61  SSDASQTTAVVEKRLESITLMVQGVWSDDPASQLEATTQFRKLLSIERSPPIDEVIKAGV 120

Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
           VPRFVEFLGRHD+PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS SDDVRE
Sbjct: 121 VPRFVEFLGRHDLPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSASDDVRE 180

Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
           QAVWALGNVAGDSPSCRDLVL  GALMPLL+QLNEHSKLSMLRNATWTLSNFCRGKPPTP
Sbjct: 181 QAVWALGNVAGDSPSCRDLVLGHGALMPLLSQLNEHSKLSMLRNATWTLSNFCRGKPPTP 240

Query: 239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP 298
           FEQVKPALP+L++LIHLNDEEVLTDACWALSYLSDGPNDKIQAV+EAGVCPRLVELL+HP
Sbjct: 241 FEQVKPALPVLRQLIHLNDEEVLTDACWALSYLSDGPNDKIQAVLEAGVCPRLVELLLHP 300

Query: 299 SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358
           S TVLIPALRTVGNIVTGDDAQTQFVIDN VLPCLYQLLTQNHKKSIKKEACWTISNITA
Sbjct: 301 SPTVLIPALRTVGNIVTGDDAQTQFVIDNQVLPCLYQLLTQNHKKSIKKEACWTISNITA 360

Query: 359 GNRAQIQ 365
           GN+ QIQ
Sbjct: 361 GNKGQIQ 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125002|ref|XP_002319478.1| predicted protein [Populus trichocarpa] gi|222857854|gb|EEE95401.1| predicted protein [Populus trichocarpa]

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/368 (90%), Positives = 348/368 (94%), Gaps = 3/368 (0%)

Query: 1   MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQ 60
           MSLRP TR EVRKK YKTGVDADEARRRREDNL+EIRKNKREDNLLKKRREGLL Q Q Q
Sbjct: 1   MSLRPGTRTEVRKKSYKTGVDADEARRRREDNLLEIRKNKREDNLLKKRREGLLFQSQSQ 60

Query: 61  GL-DASQNA--IEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAG 117
            L DA+Q+A  IEKKLES+P MVQGVWS+DP+LQLEATTQFRKLLSIERSPPID+VIKAG
Sbjct: 61  PLLDAAQHAANIEKKLESLPMMVQGVWSDDPSLQLEATTQFRKLLSIERSPPIDDVIKAG 120

Query: 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVR 177
           VVPRFVEFLGRHD+PQLQFEAAWALTNVASGTSEHTRVVI+HGAVPMFVQLLSSGSDDVR
Sbjct: 121 VVPRFVEFLGRHDLPQLQFEAAWALTNVASGTSEHTRVVIDHGAVPMFVQLLSSGSDDVR 180

Query: 178 EQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT 237
           EQAVWALGNVAGDSPSCRDLVL  GALMPLLAQLNE+SKLSMLRNATWTLSNFCRGKPPT
Sbjct: 181 EQAVWALGNVAGDSPSCRDLVLGHGALMPLLAQLNENSKLSMLRNATWTLSNFCRGKPPT 240

Query: 238 PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH 297
           PF+QVKPALP+LQ+LIHLNDEEVLTDACWALSYLSDG NDKIQAVI+AGVC RLVELL+H
Sbjct: 241 PFDQVKPALPVLQQLIHLNDEEVLTDACWALSYLSDGQNDKIQAVIDAGVCRRLVELLLH 300

Query: 298 PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT 357
           PS TVLIPALRTVGNIVTGDD QTQFVIDN VLPCL+QLL QNHKKSIKKEACWTISNIT
Sbjct: 301 PSPTVLIPALRTVGNIVTGDDGQTQFVIDNQVLPCLHQLLLQNHKKSIKKEACWTISNIT 360

Query: 358 AGNRAQIQ 365
           AGNR QIQ
Sbjct: 361 AGNRTQIQ 368

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453998|ref|XP_004144743.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus] gi|449490806|ref|XP_004158712.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus]

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/367 (89%), Positives = 349/367 (95%), Gaps = 3/367 (0%)

Query: 1   MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQ 60
           MSLRP+TR +VRKK YKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLL  QQ 
Sbjct: 1   MSLRPTTRTDVRKKSYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLHSQQL 60

Query: 61  GLDASQNAI--EKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGV 118
            LDA+QNA+  EK+LESIP +VQGVWS D A QLEATTQFRKLLSIERSPPIDEVIKAGV
Sbjct: 61  -LDAAQNAVAAEKRLESIPVLVQGVWSADTAGQLEATTQFRKLLSIERSPPIDEVIKAGV 119

Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
           VP+FVEFLGRHD+PQLQFEAAWALTN+ASGTSEHTRVVI+HGAVP+FVQLLSSGSDDVRE
Sbjct: 120 VPKFVEFLGRHDLPQLQFEAAWALTNIASGTSEHTRVVIDHGAVPIFVQLLSSGSDDVRE 179

Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
           QAVWALGNVAGDSPSCRDLVLS GAL+PLL QLNEHSKLSMLRNATWTLSNFCRGKPPTP
Sbjct: 180 QAVWALGNVAGDSPSCRDLVLSHGALVPLLGQLNEHSKLSMLRNATWTLSNFCRGKPPTP 239

Query: 239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP 298
           F+QVKPALP+L++LIHLNDEEVLTDACWALSYLSDGPN+KIQAVIEAGVCPRLVELL+H 
Sbjct: 240 FDQVKPALPVLRQLIHLNDEEVLTDACWALSYLSDGPNEKIQAVIEAGVCPRLVELLLHQ 299

Query: 299 SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358
           S +VL+PALRTVGNIVTGDDAQTQFVIDN VLP LYQLLTQNHKKSIKKEACWTISNITA
Sbjct: 300 SPSVLVPALRTVGNIVTGDDAQTQFVIDNQVLPNLYQLLTQNHKKSIKKEACWTISNITA 359

Query: 359 GNRAQIQ 365
           GNRAQIQ
Sbjct: 360 GNRAQIQ 366

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818271|emb|CAN64716.1| hypothetical protein VITISV_026717 [Vitis vinifera]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/367 (87%), Positives = 335/367 (91%), Gaps = 14/367 (3%)

Query: 1   MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQ 60
           MSLRP +R +VRKK YKTGVDA+EARRRREDNLVEIRKNKREDNLLKKRREGL+LQ QQ 
Sbjct: 1   MSLRPGSRTDVRKKSYKTGVDAEEARRRREDNLVEIRKNKREDNLLKKRREGLILQSQQF 60

Query: 61  GLDASQNA--IEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGV 118
             DASQ    +EK+LESI  MVQGVWS+DPA QLEATTQFRKLLSI            GV
Sbjct: 61  SSDASQTTAVVEKRLESITLMVQGVWSDDPASQLEATTQFRKLLSI------------GV 108

Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
           VPRFVEFLGRHD+PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS SDDVRE
Sbjct: 109 VPRFVEFLGRHDLPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSASDDVRE 168

Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
           QAVWALGNVAGDSPSCRDLVL  GALMPLL+QLNEHSKLSMLRNATWTLSNFCRGKPPTP
Sbjct: 169 QAVWALGNVAGDSPSCRDLVLGHGALMPLLSQLNEHSKLSMLRNATWTLSNFCRGKPPTP 228

Query: 239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP 298
           FEQVKPALP+L++LIHLNDEEVLTDACWALSYLSDGPNDKIQAV+EAGVCPRLVELL+HP
Sbjct: 229 FEQVKPALPVLRQLIHLNDEEVLTDACWALSYLSDGPNDKIQAVLEAGVCPRLVELLLHP 288

Query: 299 SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358
           S TVLIPALRTVGNIVTGDDAQTQFVIDN VLPCLYQLLTQNHKKSIKKEACWTISNITA
Sbjct: 289 SPTVLIPALRTVGNIVTGDDAQTQFVIDNQVLPCLYQLLTQNHKKSIKKEACWTISNITA 348

Query: 359 GNRAQIQ 365
           GN+ QIQ
Sbjct: 349 GNKGQIQ 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843718|ref|XP_002889740.1| hypothetical protein ARALYDRAFT_888168 [Arabidopsis lyrata subsp. lyrata] gi|297335582|gb|EFH65999.1| hypothetical protein ARALYDRAFT_888168 [Arabidopsis lyrata subsp. lyrata]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/369 (86%), Positives = 343/369 (92%), Gaps = 4/369 (1%)

Query: 1   MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQ--PQ 58
           MSLRPSTRAE+RKK YKTGVDADEARRRREDNLVEIRKNKRED+LLKKRREG++LQ  P 
Sbjct: 1   MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQPL 60

Query: 59  QQGLDASQNA--IEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA 116
             GLD  QNA  +EK+LE IP MVQGV+S+DP  QLEATTQFRKLLSIERSPPIDEVIKA
Sbjct: 61  GAGLDGPQNAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKA 120

Query: 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDV 176
           GVVPRFVEFLGR D PQLQFEAAWALTNVASGTS+HTRVVIE GAVP+FVQLLSS SDDV
Sbjct: 121 GVVPRFVEFLGRQDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVQLLSSASDDV 180

Query: 177 REQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 236
           REQAVWALGNVAGDSP+CR+LVL+ GAL PLLAQLNE+SKLSMLRNATWTLSNFCRGKPP
Sbjct: 181 REQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKPP 240

Query: 237 TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM 296
           TPFEQVKPALP+L++LI+LNDEEVLTDACWALSYLSDGPN+KIQAVI+AGVCPRLVELL 
Sbjct: 241 TPFEQVKPALPVLRQLIYLNDEEVLTDACWALSYLSDGPNNKIQAVIQAGVCPRLVELLG 300

Query: 297 HPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI 356
           H S TVLIPALRTVGNIVTGDD+QTQF+ID+GVLP LY LLTQNHKKSIKKEACWTISNI
Sbjct: 301 HQSPTVLIPALRTVGNIVTGDDSQTQFIIDSGVLPHLYNLLTQNHKKSIKKEACWTISNI 360

Query: 357 TAGNRAQIQ 365
           TAGN+ QI+
Sbjct: 361 TAGNKVQIE 369

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217478|ref|NP_172398.1| importin alpha isoform 4 [Arabidopsis thaliana] gi|30681049|ref|NP_849623.1| importin alpha isoform 4 [Arabidopsis thaliana] gi|3249096|gb|AAC24079.1| Match to mRNA for importin alpha-like protein 4 (impa4) gb|Y14616 from A. thaliana. ESTs gb|N96440, gb|N37503, gb|N37498 and gb|T42198 come from this gene [Arabidopsis thaliana] gi|20259334|gb|AAM13992.1| putative importin alpha protein [Arabidopsis thaliana] gi|21436201|gb|AAM51388.1| putative importin alpha protein [Arabidopsis thaliana] gi|222422859|dbj|BAH19416.1| AT1G09270 [Arabidopsis thaliana] gi|332190300|gb|AEE28421.1| importin alpha isoform 4 [Arabidopsis thaliana] gi|332190301|gb|AEE28422.1| importin alpha isoform 4 [Arabidopsis thaliana]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/370 (85%), Positives = 343/370 (92%), Gaps = 5/370 (1%)

Query: 1   MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQ---P 57
           MSLRPSTRAE+RKK YKTGVDADEARRRREDNLVEIRKNKRED+LLKKRREG++LQ   P
Sbjct: 1   MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLP 60

Query: 58  QQQGLDASQNA--IEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIK 115
              GLD  Q A  +EK+LE IP MVQGV+S+DP  QLEATTQFRKLLSIERSPPIDEVIK
Sbjct: 61  LGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIK 120

Query: 116 AGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDD 175
           AGV+PRFVEFLGRHD PQLQFEAAWALTNVASGTS+HTRVVIE GAVP+FV+LL+S SDD
Sbjct: 121 AGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDD 180

Query: 176 VREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 235
           VREQAVWALGNVAGDSP+CR+LVL+ GAL PLLAQLNE+SKLSMLRNATWTLSNFCRGKP
Sbjct: 181 VREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKP 240

Query: 236 PTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 295
           PTPFEQVKPALPIL++LI+LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL
Sbjct: 241 PTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 300

Query: 296 MHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN 355
            H S TVLIPALRTVGNIVTGDD+QTQF+I++GVLP LY LLTQNHKKSIKKEACWTISN
Sbjct: 301 GHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISN 360

Query: 356 ITAGNRAQIQ 365
           ITAGN+ QI+
Sbjct: 361 ITAGNKLQIE 370

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126572488|gb|ABO21639.1| importin alpha-like protein [Brassica napus] gi|126572504|gb|ABO21640.1| importin alpha-like protein [Brassica napus]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/372 (86%), Positives = 347/372 (93%), Gaps = 7/372 (1%)

Query: 1   MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQ 60
           MSLRPSTRAE+RKK YKTGVDADEARRRREDNLVEIRKNKRED+LLKKRREG++LQ QQQ
Sbjct: 1   MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQQQ 60

Query: 61  -----GLDASQNA--IEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEV 113
                GLDA Q+A  +EK+LE IP MVQGV+SEDP  QLEATTQFRKLLSIERSPPIDEV
Sbjct: 61  PLGAAGLDALQSAAAVEKRLEGIPMMVQGVYSEDPQAQLEATTQFRKLLSIERSPPIDEV 120

Query: 114 IKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGS 173
           IKAGV+PRFVEFL R D PQLQFEAAWALTNVASGTS+HTRVVIEHGAVP+FV+LLSS S
Sbjct: 121 IKAGVIPRFVEFLRRQDHPQLQFEAAWALTNVASGTSDHTRVVIEHGAVPIFVELLSSAS 180

Query: 174 DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233
           DDVREQAVWALGNVAGDSP+CR+LVLS GAL PLL+QLNE+SKLSMLRNATWTLSNFCRG
Sbjct: 181 DDVREQAVWALGNVAGDSPNCRNLVLSCGALAPLLSQLNENSKLSMLRNATWTLSNFCRG 240

Query: 234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVE 293
           KPPTPFE+VKPALP+L++LI+LNDEEVLTDACWALSYLSDGPNDKIQAVI+AGVCPRLVE
Sbjct: 241 KPPTPFEEVKPALPVLRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIQAGVCPRLVE 300

Query: 294 LLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI 353
           LL HPS TVLIPALRTVGNIVTGDD+QTQF+ID+GVLP LY LLTQNHKKSIKKEACWTI
Sbjct: 301 LLSHPSPTVLIPALRTVGNIVTGDDSQTQFIIDSGVLPHLYNLLTQNHKKSIKKEACWTI 360

Query: 354 SNITAGNRAQIQ 365
           SNITAGN+ QI+
Sbjct: 361 SNITAGNKVQIE 372

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2959322|emb|CAA74966.1| Importin alpha-like protein [Arabidopsis thaliana]

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 304/361 (84%), Positives = 330/361 (91%), Gaps = 6/361 (1%)

Query: 10  EVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQ---PQQQGLDASQ 66
           E+RKK YKTGVDADEARRRREDNLVEIRKNKRED+LLKKRREG++LQ   P   GLD  Q
Sbjct: 1   ELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLPLGAGLDGPQ 60

Query: 67  NA--IEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVE 124
            A  +EK+LE IP MVQGV+S+DP  QLEATTQFRKLLSIERSPPIDEVIKAGV+PRFVE
Sbjct: 61  TAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGVIPRFVE 120

Query: 125 FLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWAL 184
           FLGRHD PQLQFEAAWALTNVASGTS+HTRVVIE GAVP+FV+LL+S SDDVREQAVWAL
Sbjct: 121 FLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDDVREQAVWAL 180

Query: 185 GNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP 244
           GNVAGDSP+CR+LVL+ GAL PLLAQLNE+SKLSMLRNATWTLSNFCRGKPPTPFEQVKP
Sbjct: 181 GNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKPPTPFEQVKP 240

Query: 245 ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLI 304
           ALPIL++LI+LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL H S TVLI
Sbjct: 241 ALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLGHQSPTVLI 300

Query: 305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQI 364
           PALRTVGNIVTGDD+QTQF+I++GVLP LY     NHKKSIKKEACWTISNITAGN+ QI
Sbjct: 301 PALRTVGNIVTGDDSQTQFIIESGVLPHLYN-CDANHKKSIKKEACWTISNITAGNKLQI 359

Query: 365 Q 365
           +
Sbjct: 360 E 360

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.950	0.678	0.810	1.5e-154
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.945	0.682	0.731	3e-140
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.950	0.682	0.736	8e-140
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.950	0.687	0.672	1.4e-128
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.950	0.677	0.668	5.7e-123
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.940	0.695	0.627	1.2e-115
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.921	0.686	0.595	2.2e-105
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.859	0.598	0.641	5.8e-105
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.859	0.596	0.624	7.5e-105
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.901	0.655	0.576	1.9e-99

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1507 (535.5 bits), Expect = 1.5e-154, P = 1.5e-154
 Identities = 300/370 (81%), Positives = 324/370 (87%)

Query:     1 MSLRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREXXXXXXXX- 59
             MSLRPSTRAE+RKK YKTGV           NLVEIRKNKRED+LLKKRRE         
Sbjct:     1 MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLP 60

Query:    60 --XXXDASQNA--IEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIK 115
                  D  Q A  +EK+LE IP MVQGV+S+DP  QLEATTQFRKLLSIERSPPIDEVIK
Sbjct:    61 LGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIK 120

Query:   116 AGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDD 175
             AGV+PRFVEFLGRHD PQLQFEAAWALTNVASGTS+HTRVVIE GAVP+FV+LL+S SDD
Sbjct:   121 AGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDD 180

Query:   176 VREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 235
             VREQAVWALGNVAGDSP+CR+LVL+ GAL PLLAQLNE+SKLSMLRNATWTLSNFCRGKP
Sbjct:   181 VREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKP 240

Query:   236 PTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 295
             PTPFEQVKPALPIL++LI+LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL
Sbjct:   241 PTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 300

Query:   296 MHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN 355
              H S TVLIPALRTVGNIVTGDD+QTQF+I++GVLP LY LLTQNHKKSIKKEACWTISN
Sbjct:   301 GHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISN 360

Query:   356 ITAGNRAQIQ 365
             ITAGN+ QI+
Sbjct:   361 ITAGNKLQIE 370

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1372 (488.0 bits), Expect = 3.0e-140, P = 3.0e-140
 Identities = 267/365 (73%), Positives = 304/365 (83%)

Query:     1 MSLRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREXXXXXXXXX 60
             MSLRP+ + EVR+  YK  V           N+VEIRK+KRE++L+KKRRE         
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query:    61 XXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVP 120
                A+  +++KKL+S+  MV GVWS+DPALQLE+TTQFRKLLSIERSPPI+EVI AGVVP
Sbjct:    61 SASAA--SVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVP 118

Query:   121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQA 180
             RFVEFL + D P +QFEAAWALTN+ASGTS+HT+VVI+H AVP+FVQLL+S SDDVREQA
Sbjct:   119 RFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQA 178

Query:   181 VWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE 240
             VWALGNVAGDSP CRDLVL  GAL+PLL QLNEH+KLSMLRNATWTLSNFCRGKP   F+
Sbjct:   179 VWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFD 238

Query:   241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300
             QVKPALP L+RLIH +DEEVLTDACWALSYLSDG NDKIQ VI+AGV P+LVELL+H S 
Sbjct:   239 QVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSP 298

Query:   301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
             +VLIPALRTVGNIVTGDD QTQ VI++G LPCL  LLTQNHKKSIKKEACWTISNITAGN
Sbjct:   299 SVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGN 358

Query:   361 RAQIQ 365
             + QIQ
Sbjct:   359 KDQIQ 363

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1368 (486.6 bits), Expect = 8.0e-140, P = 8.0e-140
 Identities = 271/368 (73%), Positives = 303/368 (82%)

Query:     1 MSLRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREXXXXXXXXX 60
             MSLRP+ + EVR+  YK  V           N+VEIRK+KRE++L KKRRE         
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQ 60

Query:    61 XXDA---SQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAG 117
                +   + + +EKKLES+P+MV GVWS+D +LQLEATTQFRKLLSIERSPPI+EVI AG
Sbjct:    61 FAPSPVPASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAG 120

Query:   118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVR 177
             VVPRFVEFL R D PQLQFEAAWALTN+ASGTSE+T+VVIEHGAVP+FVQLL+S SDDVR
Sbjct:   121 VVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVR 180

Query:   178 EQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT 237
             EQAVWALGNVAGDSP CRDLVL  GAL+PLL+QLNEH+KLSMLRNATWTLSNFCRGKP  
Sbjct:   181 EQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQP 240

Query:   238 PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH 297
             PF+QV+PALP L+RLIH  DEEVLTDACWALSYLSDG NDKIQ+VIEAGV PRLVELL H
Sbjct:   241 PFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQH 300

Query:   298 PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT 357
              S +VLIPALR++GNIVTGDD QTQ VI +G L  L  LLT NHKKSIKKEACWTISNIT
Sbjct:   301 QSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNIT 360

Query:   358 AGNRAQIQ 365
             AGNR QIQ
Sbjct:   361 AGNRDQIQ 368

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
 Identities = 246/366 (67%), Positives = 286/366 (78%)

Query:     1 MSLRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKR-REXXXXXXXX 59
             MSLRPS + EVR+  YK  V           NLVEIRKNKRE+NL KKR           
Sbjct:     1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query:    60 XXXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVV 119
                +   ++  +  +++P+MV G+WSED   QLEAT   RKLLSIE++PPI+EV+++GVV
Sbjct:    61 GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120

Query:   120 PRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQ 179
             PR V+FL R D P+LQFEAAWALTN+ASGTSE+T V+IE GAVP+F+QLLSS S+DVREQ
Sbjct:   121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180

Query:   180 AVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF 239
             AVWALGNVAGDSP CRDLVLS GA+ PLL+Q NE++KLSMLRNATWTLSNFCRGKPP  F
Sbjct:   181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240

Query:   240 EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS 299
             EQ +PALP+L+RL+   DEEVLTDACWALSYLSD  NDKIQAVIEAGV PRL++LL H S
Sbjct:   241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300

Query:   300 ATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG 359
              +VLIPALRT+GNIVTGDD QTQ V+D   LPCL  LL  N+KKSIKKEACWTISNITAG
Sbjct:   301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360

Query:   360 NRAQIQ 365
             N  QIQ
Sbjct:   361 NADQIQ 366

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1209 (430.6 bits), Expect = 5.7e-123, P = 5.7e-123
 Identities = 246/368 (66%), Positives = 282/368 (76%)

Query:     1 MSLRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREXXXXXXXXX 60
             MS +PS + EVR+  YK  V           N+VEIRKNKRE+NL KKRRE         
Sbjct:     1 MSYKPSAKTEVRRNRYKVSVDADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQ 60

Query:    61 -XXDASQNA-IEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGV 118
                D S +   E +LE+I  M+ GV SED  LQLEAT  FR+LLSIER+PPI+EV+++GV
Sbjct:    61 PGQDFSSSLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGV 120

Query:   119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
             VP  V+FL R D  QLQFEAAWALTN+ASGTSE+TRV+I+ GAVP+FV+LLSS S++VRE
Sbjct:   121 VPHIVQFLSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVRE 180

Query:   179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
             QAVWALGNVAGDSP CRD VLS  A+M LLAQ +EHSKLSMLRNATWTLSNFCRGKP   
Sbjct:   181 QAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPA 240

Query:   239 FEQ-VKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH 297
             FEQ  K ALP L+RL+H  DEEVLTDA WALSYLSDG N+KIQ VI+AGV PRLV+LL H
Sbjct:   241 FEQQTKAALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAH 300

Query:   298 PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT 357
             PS +VLIPALRT+GNIVTGDD QTQ VI +  LP L  LL   +KKSIKKEACWTISNIT
Sbjct:   301 PSPSVLIPALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNIT 360

Query:   358 AGNRAQIQ 365
             AGN +QIQ
Sbjct:   361 AGNTSQIQ 368

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1140 (406.4 bits), Expect = 1.2e-115, P = 1.2e-115
 Identities = 229/365 (62%), Positives = 274/365 (75%)

Query:     1 MSLRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREXXXXXXXXX 60
             MSLRPST+ E+R+  YK  V            LVEIRK+KR +NL+KKRR          
Sbjct:     1 MSLRPSTKTEIRRIRYKVSVDAEEGRRRREDFLVEIRKSKRNENLMKKRRVKVLPPDYKL 60

Query:    61 XXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVP 120
                 S +  E  LE I +M+ GV+S+DP+LQLE TT+FR +LS +RSPP D VIK+GVVP
Sbjct:    61 I---SNDPFESLLE-IANMITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVP 116

Query:   121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQA 180
             RFVEFL + D P+LQFEAAWALTN+ASG SEHT+VVI+HG VP+FVQLL+S  DDVREQA
Sbjct:   117 RFVEFLKKDDNPKLQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQA 176

Query:   181 VWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE 240
             +W LGNVAGDS  CRD VL+SGA +PLL QLN H+ LS+LRNATWTLSNF RGKP  PF+
Sbjct:   177 IWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFD 236

Query:   241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300
              VK  LP+L+RL++ +DE+VL DACWALS LSD  N+ IQ+VIEAGV PRLVELL H S 
Sbjct:   237 LVKHVLPVLKRLVYSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHASP 296

Query:   301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
              VL+PALR +GNIV+G+  QT  VI+ GVLP L  LLTQNH + I++EACWTISNITAG 
Sbjct:   297 VVLVPALRCIGNIVSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGL 356

Query:   361 RAQIQ 365
               QIQ
Sbjct:   357 EEQIQ 361

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
 Identities = 215/361 (59%), Positives = 263/361 (72%)

Query:     7 TRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREXXXXXXXXXXXDASQ 66
             ++ E RK  YK  +             + IRKNKRE++LLKKR +               
Sbjct:     4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKV----D 59

Query:    67 NAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFL 126
             + I ++LE +PS+V  + SE+P L L++TT FRKLLSIE+SPPI+EVIK G+VPR V+FL
Sbjct:    60 SLINQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFL 119

Query:   127 GRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGN 186
                D PQLQFEAAWALTN+ASGT E TRVVIE+GA+ +FV LLSS  DDVREQAVWALGN
Sbjct:   120 YMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGN 179

Query:   187 VAGDSPSCRDLVLSSGALMPLLAQLNEHS--KLSMLRNATWTLSNFCRGKPPTPFEQVKP 244
             +AGDS  CRDLVLS  AL PLL+ L   +  K+SM+RNATWTLSNFCRGKP  PFE V+ 
Sbjct:   180 IAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRA 239

Query:   245 ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLI 304
             +LP+L +LI+  DEEVL DACWALSYLSDG N++IQ VI+A VC ++VELL HP+  V  
Sbjct:   240 SLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQT 299

Query:   305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQI 364
             PALRT+GNIVTGDD QTQ V+    L  L  LL Q+ K++I+KEACWTISNITAG++ QI
Sbjct:   300 PALRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQI 358

Query:   365 Q 365
             Q
Sbjct:   359 Q 359

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 218/340 (64%), Positives = 254/340 (74%)

Query:    34 VEIRKNKREDNLLKKRREXXXXXXXXXXXDASQNA------IEKKL-ESIPSMVQGVWSE 86
             VEIRK KRE+NL K+R              A+ ++       E +L E +P MVQGV+SE
Sbjct:    34 VEIRKAKREENLAKRRGIGTGADRPGASLGAAPDSDDDTAPTESQLNEDLPQMVQGVFSE 93

Query:    87 DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVA 146
                 Q++ATT+FRKLLS ER+PPI+EVIK GVV RFVEFL R     +QFEAAWALTN+A
Sbjct:    94 SIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVSRFVEFL-RSPHTLVQFEAAWALTNIA 152

Query:   147 SGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMP 206
             SG++  T+VVIE GAVP+FV+LL S   DVREQAVWALGN+AGDSP CRD VLS GAL P
Sbjct:   153 SGSATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIAGDSPQCRDYVLSCGALKP 212

Query:   207 LLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIHLNDEEVLTDAC 265
             LL  L +  KLSMLRNATWTLSNFCRGK P P +  + PALP+L +L++  D+EVL DAC
Sbjct:   213 LLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDWTTIAPALPVLAKLVYSLDDEVLIDAC 272

Query:   266 WALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVI 325
             WA+SYLSDG NDKIQAVIEAG+  RLVELLMH S +V  PALR+VGNIVTGDD QTQ +I
Sbjct:   273 WAISYLSDGSNDKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVTGDDVQTQVII 332

Query:   326 DNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
             + G LPCL  LL  N K  I+KEACWTISNITAGN AQIQ
Sbjct:   333 NCGALPCLLSLLGSN-KDGIRKEACWTISNITAGNSAQIQ 371

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
 Identities = 213/341 (62%), Positives = 259/341 (75%)

Query:    34 VEIRKNKREDNLLKKR----REXXXXXX---XXXXXDASQNAIEKKLE-SIPSMVQGVWS 85
             VEIRK KRE+NL K+R    R+              D   +AIE +L   +P MV+GV+S
Sbjct:    34 VEIRKQKREENLAKRRGIQTRDGGIGVGGGMAAAESDDEASAIESELNVELPEMVKGVFS 93

Query:    86 EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNV 145
             +    Q++ATT+FRKLLS ER+PPI+ VI+ GVV RFVEFL R     +QFEAAWALTN+
Sbjct:    94 DQIEAQIQATTKFRKLLSKERNPPIERVIETGVVSRFVEFL-RSPHTLVQFEAAWALTNI 152

Query:   146 ASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALM 205
             ASG+++ T+VVIE GAVP+FV+LLSS   DVREQAVWALGN+AGDSP CRD VL++GAL 
Sbjct:   153 ASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQAVWALGNIAGDSPQCRDFVLNAGALR 212

Query:   206 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIHLNDEEVLTDA 264
             PLL  +N+  K+SMLRNATWTLSNFCRGK P P +  + PALP+L +LI++ D+EVL DA
Sbjct:   213 PLLTLINDGRKISMLRNATWTLSNFCRGKTPQPDWNTIAPALPVLAKLIYMLDDEVLIDA 272

Query:   265 CWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFV 324
             CWA+SYLSDGPN+KIQAVIEAG+  RLVELLMH S +V  PALR+VGNIVTGDD QTQ +
Sbjct:   273 CWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVTGDDVQTQVI 332

Query:   325 IDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
             I+ G LP L  LL+   K  I+KEACWTISNITAGN +QIQ
Sbjct:   333 INCGALPALLSLLSST-KDGIRKEACWTISNITAGNSSQIQ 372

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
 Identities = 208/361 (57%), Positives = 259/361 (71%)

Query:    11 VRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREXXXXXXXXXXXDASQNAIE 70
             VR+ GYK  V           ++VEIRK KRE++LLKKRRE             S ++++
Sbjct:     9 VRRSGYKAVVDGVGGRRRREDDMVEIRKAKREESLLKKRREALPHS-------PSADSLD 61

Query:    71 KKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIER-SPPIDEVIKAGVVPRFVEFLGRH 129
             +KL S       +WS++  L +EATTQ R LL  E  +  ++EVI+AG+VPRFVEFL   
Sbjct:    62 QKLISC------IWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWD 115

Query:   130 DMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAG 189
             D PQLQFEAAWALTN+ASGTSE+T VVI+HGAV + V+LL+S  D VREQ VWALGN++G
Sbjct:   116 DSPQLQFEAAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISG 175

Query:   190 DSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPIL 249
             DSP CRD+VL   AL  LL QLN  +KLSML NA WTLSN CRGKP  PF+QV  ALP L
Sbjct:   176 DSPRCRDIVLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPAL 235

Query:   250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
              +LI L+D+E+L   CWAL YLSDG N+KIQAVIEA VC RL+ L +H S +V+ PALRT
Sbjct:   236 AQLIRLDDKELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRT 295

Query:   310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ-VHD 368
             +GNIVTG+D+QTQ +ID   LPCL  LL  ++ K+I+KEACWT+SNITAG ++QIQ V D
Sbjct:   296 IGNIVTGNDSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFD 355

Query:   369 S 369
             +
Sbjct:   356 A 356

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5722	0.8828	0.6324	yes	no
O60684	IMA7_HUMAN	No assigned EC number	0.5693	0.8828	0.6324	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5693	0.8828	0.6324	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5365	0.9114	0.6457	yes	no
O94374	IMA2_SCHPO	No assigned EC number	0.5561	0.9166	0.6530	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.6177	0.9218	0.6860	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.7622	0.9505	0.6925	N/A	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5751	0.8828	0.6324	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.7835	0.9453	0.6901	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-155
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-34
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-29
pfam01749	97	pfam01749, IBB, Importin beta binding domain	6e-29
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-20
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-16
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	3e-13
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-10
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-08
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	6e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-05
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	2e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	2e-04
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	5e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-04
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.002

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  447 bits (1152), Expect = e-155
 Identities = 206/352 (58%), Positives = 251/352 (71%), Gaps = 8/352 (2%)

Query: 17  KTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLES- 75
           K    ADE RRRRE+  VE+RK KRE+ L K+R     L    +  ++S   +E++  S 
Sbjct: 17  KGRFSADELRRRREEQQVELRKQKREELLNKRRN----LADVSEEAESSFIPMEQQFYSE 72

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           +P + Q ++S+D   QL+A  +FRKLLS E SPPI  VI AGVVPRFVEF+       LQ
Sbjct: 73  LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQ 132

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
           FEAAWALTN+ASGT++ T+VV++ GAVP+F+QLLSS  DDVREQAVWALGN+AGDS  CR
Sbjct: 133 FEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192

Query: 196 DLVLSSGALMPLLAQLNEH-SKLSMLRNATWTLSNFCRGKPPTPFEQ-VKPALPILQRLI 253
           D VL  GAL PLL  L      +SMLRNATWTLSN CRGK P P    +  ALPIL +LI
Sbjct: 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI 252

Query: 254 HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313
           +  D EVL DACWA+SYLSDGPN+KIQAV++ G+  RLVELL H SA +  PALR+VGNI
Sbjct: 253 YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNI 312

Query: 314 VTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           VTG D QTQ +I+ G L     LL+ + K++I+KEACWTISNITAGN  QIQ
Sbjct: 313 VTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAGNTEQIQ 363

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  123 bits (311), Expect = 1e-34
 Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 2/122 (1%)

Query: 111 DEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS 170
           + VI+AG +P  V  L       +Q EAAWAL+N+++G +++ + V+E G +P  VQLL 
Sbjct: 1   EAVIQAGGLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 171 SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF 230
           S  ++V + A+WAL N+A      + +VL +G + P L  L + S   + +NAT  LSN 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGV-PKLVNLLDSSNEDIQKNATGALSNL 118

Query: 231 CR 232
             
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  108 bits (272), Expect = 6e-29
 Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 1/114 (0%)

Query: 245 ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLI 304
            LP L  L+  +DE V  +A WALS LS G ND IQAV+EAG  P LV+LL      V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358
            AL  + N+  G +     V++ G +P L  LL  +  + I+K A   +SN+ +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score =  107 bits (270), Expect = 6e-29
 Identities = 43/100 (43%), Positives = 56/100 (56%), Gaps = 9/100 (9%)

Query: 4  RPSTRAEVRKKGYKT-GVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGL 62
              + E R+K YK  G DA+E RRRRE+  VE+RKNKRE+ LLK+R  GL   P + G 
Sbjct: 1  ESPNKPEYRRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGL---PPEDGA 57

Query: 63 DASQNA-----IEKKLESIPSMVQGVWSEDPALQLEATTQ 97
          +           ++    +P MVQGV S+DP  QL AT  
Sbjct: 58 EPESELDGSSDADQLSLELPVMVQGVNSDDPENQLSATQA 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 87.4 bits (217), Expect = 4e-21
 Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 42/161 (26%)

Query: 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEH 214
            VI+ G +P  V LLSS  ++V+ +A WAL N++  +      V+ +G L          
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGL---------- 51

Query: 215 SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG 274
                                           P L +L+   DEEV+  A WAL  L+ G
Sbjct: 52  --------------------------------PALVQLLKSEDEEVVKAALWALRNLAAG 79

Query: 275 PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT 315
           P D    V+EAG  P+LV LL   +  +   A   + N+ +
Sbjct: 80  PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 84.3 bits (209), Expect = 5e-20
 Identities = 39/113 (34%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           +P++V  + S D  +Q EA      L S   +  I  V++AG +P  V+ L   D  ++ 
Sbjct: 9   LPALVSLLSSSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVV 66

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA 188
             A WAL N+A+G  ++  +V+E G VP  V LL S ++D+++ A  AL N+A
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 280 QAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQ 339
           +AVI+AG  P LV LL      V   A   + N+  G++   Q V++ G LP L QLL  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 340 NHKKSIKKEACWTISNITAGNRAQIQV 366
             ++ + K A W + N+ AG      +
Sbjct: 61  EDEE-VVKAALWALRNLAAGPEDNKLI 86

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 54/222 (24%), Positives = 105/222 (47%), Gaps = 14/222 (6%)

Query: 106 RSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMF 165
           ++PP D    +  +P   + +   D P++  +A WA++ ++ G +E  + V++ G     
Sbjct: 232 KNPPPDWSNISQALPILAKLIYSRD-PEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRL 290

Query: 166 VQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATW 225
           V+LLS  S  ++  A+ ++GN+   S     ++++ GAL      L    K ++ + A W
Sbjct: 291 VELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGAL-KAFRSLLSSPKENIRKEACW 349

Query: 226 TLSNFCRGKPPTPFEQVKPAL-----PILQRLIHLNDEEVLTDACWALSYLSDGPN---D 277
           T+SN   G      EQ++  +     P L  L+   + ++  +ACWA+S  + G     D
Sbjct: 350 TISNITAGNT----EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPD 405

Query: 278 KIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDA 319
            I+ ++  G    L +LL      ++  AL  + NI+   + 
Sbjct: 406 IIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ 447

Length = 526

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 54.8 bits (133), Expect = 3e-10
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query: 149 TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA 188
           + E+ + VIE GAVP  VQLLSS  ++V+E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 52.4 bits (127), Expect = 2e-09
 Identities = 14/40 (35%), Positives = 26/40 (65%)

Query: 149 TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA 188
             E+ + V++ G +P  V+LL S  ++V ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 49.0 bits (118), Expect = 3e-08
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 317 DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358
                Q VI+ G +P L QLL  +  + +++EA W +SN+ A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLL-SSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 48.6 bits (116), Expect = 6e-08
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV 187
            +++  AA AL  +A G  E  R  +    +P  + LL    D+VRE A WALG +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 275 PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT 315
             +  QAVIEAG  P LV+LL  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 45.9 bits (110), Expect = 3e-07
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 107 SPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVAS 147
                 VI+AG VP  V+ L      ++Q EAAWAL+N+A+
Sbjct: 2   PENKQAVIEAGAVPPLVQLL-SSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.9 bits (110), Expect = 3e-07
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 106 RSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVAS 147
                  V+ AG +P  VE L + +  ++  EAAWAL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVELL-KSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 44.3 bits (106), Expect = 1e-06
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 275 PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314
            ++  QAV++AG  P LVELL      V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 317 DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358
           DD   Q V+D G LP L +LL    ++ + KEA W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 191 SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232
           SP  +  V+ +GA+ P L QL       +   A W LSN   
Sbjct: 1   SPENKQAVIEAGAV-PPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 176 VREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF 230
           VRE A  ALG +AG  P    L  +   L+P L  L +     +   A W L   
Sbjct: 3   VREAAALALGALAGGGP--ELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 22/110 (20%)

Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
           +   +E L     P+++  AA AL  +               A+P  ++LL     +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELGDPE-----------ALPALLELLKDPDPEVRR 49

Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLS 228
            A  ALG +               AL  LL  L +     +   A   L+
Sbjct: 50  AAAEALGKLGDPE-----------ALPALLELLQDDDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 57/255 (22%), Positives = 87/255 (34%), Gaps = 56/255 (21%)

Query: 66  QNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEF 125
              +E   E+   +++ +  ED  ++L A     +L S E  P + E++           
Sbjct: 35  DLILELAPEAADELLKLLEDEDLLVRLSAAVALGELGSEEAVPLLRELLSDED------- 87

Query: 126 LGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS-SGSDDVREQAVWAL 184
                 P+++  AA AL  +               AVP  V+LL    ++ VR  A  AL
Sbjct: 88  ------PRVRDAAADALGELGDPE-----------AVPPLVELLENDENEGVRAAAARAL 130

Query: 185 GNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR------GKPPTP 238
           G +               AL PLL  L +    S        L +         G+   P
Sbjct: 131 GKLG-----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDP 179

Query: 239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP 298
                 A+P+L  L+   D +V   A  AL  L     +             LV+ L   
Sbjct: 180 E-----AIPLLIELLEDEDADVRRAAASALGQLGSENVEAA---------DLLVKALSDE 225

Query: 299 SATVLIPALRTVGNI 313
           S  V   AL  +G I
Sbjct: 226 SLEVRKAALLALGEI 240

Length = 335

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 36.7 bits (86), Expect = 7e-04
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 245 ALPILQRLIHLNDEEVLTDACWALSYLSD 273
           A+P L +L+   DEEV  +A WALS L+ 
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 322 QFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           Q VID GV+P   + + +  +  ++ EA W ++NI +G   Q +V
Sbjct: 108 QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152

Length = 526

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.95
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.93
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.85
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.81
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.74
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.73
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.7
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.7
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.68
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.66
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.64
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.62
PRK09687	280	putative lyase; Provisional	99.6
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.6
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	99.6
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.57
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.55
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.55
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.53
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.53
PRK09687	280	putative lyase; Provisional	99.5
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.42
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.42
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.36
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.33
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.28
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.26
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.21
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.21
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.2
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.17
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.17
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.14
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.11
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.09
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.09
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.07
PTZ00429	746	beta-adaptin; Provisional	99.05
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.05
PTZ00429	746	beta-adaptin; Provisional	99.04
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.03
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.01
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.0
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.99
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.99
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.95
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.9
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.9
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.87
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.78
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.75
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.74
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.73
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.56
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.55
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.53
TIGR02270	410	conserved hypothetical protein. Members are found	98.52
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.5
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.5
COG5369	743	Uncharacterized conserved protein [Function unknow	98.45
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.45
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.43
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.38
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.38
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.37
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.33
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.32
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.31
COG5369	743	Uncharacterized conserved protein [Function unknow	98.28
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.26
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.24
PF05536	543	Neurochondrin: Neurochondrin	98.24
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.22
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.21
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.19
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.18
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.17
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.17
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.17
TIGR02270	410	conserved hypothetical protein. Members are found	98.16
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.15
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.15
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.11
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.11
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.1
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.09
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.09
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.09
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.07
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.04
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.04
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.04
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.0
PF05536	543	Neurochondrin: Neurochondrin	97.98
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.98
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.97
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.97
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.96
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.91
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.89
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.83
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.81
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.79
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.79
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.79
KOG0567	289	consensus HEAT repeat-containing protein [General	97.75
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.74
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.71
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.67
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.67
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.66
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.64
KOG0567	289	consensus HEAT repeat-containing protein [General	97.54
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.52
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.52
PF05004	309	IFRD: Interferon-related developmental regulator (	97.48
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.48
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.47
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.41
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.39
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.37
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.3
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.28
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.28
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.17
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.12
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.11
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.1
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	97.09
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.07
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.05
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.99
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.97
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.95
KOG2956	516	consensus CLIP-associating protein [General functi	96.94
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.93
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.92
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.92
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.91
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.9
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.9
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.88
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.84
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.83
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.83
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.8
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.8
PF05004	309	IFRD: Interferon-related developmental regulator (	96.75
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.73
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.73
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	96.69
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.69
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.68
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.66
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.64
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.64
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.59
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	96.59
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.58
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.57
KOG3036	293	consensus Protein involved in cell differentiation	96.55
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.48
KOG2956	516	consensus CLIP-associating protein [General functi	96.44
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.43
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	96.38
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.29
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.29
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.23
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.2
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.14
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.11
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.04
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.03
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	96.01
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.01
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.0
KOG3036	293	consensus Protein involved in cell differentiation	95.95
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.94
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.77
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.75
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.73
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.73
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.62
KOG2062	929	consensus 26S proteasome regulatory complex, subun	95.55
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.44
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	95.43
KOG0414	1251	consensus Chromosome condensation complex Condensi	95.42
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	95.2
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.19
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.14
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.12
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.96
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.95
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.76
COG5656	970	SXM1 Importin, protein involved in nuclear import	94.66
COG5116	926	RPN2 26S proteasome regulatory complex component [	94.5
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	94.45
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.44
KOG1243	690	consensus Protein kinase [General function predict	94.37
KOG2032	533	consensus Uncharacterized conserved protein [Funct	94.3
COG5098	1128	Chromosome condensation complex Condensin, subunit	94.27
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.19
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.14
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.1
COG5116	926	RPN2 26S proteasome regulatory complex component [	94.09
KOG2025	892	consensus Chromosome condensation complex Condensi	94.08
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.83
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	93.73
KOG2025	892	consensus Chromosome condensation complex Condensi	93.47
KOG1243	690	consensus Protein kinase [General function predict	93.38
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.36
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	93.36
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	93.28
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.17
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	93.02
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	92.72
PF07814	361	WAPL: Wings apart-like protein regulation of heter	92.68
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	92.39
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	92.34
COG5656	970	SXM1 Importin, protein involved in nuclear import	91.94
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	91.91
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	91.8
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	91.62
KOG2032	533	consensus Uncharacterized conserved protein [Funct	91.62
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	91.17
KOG2933	334	consensus Uncharacterized conserved protein [Funct	91.02
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.01
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	90.83
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	90.8
KOG2137	700	consensus Protein kinase [Signal transduction mech	90.68
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	90.61
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	90.45
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	90.37
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	90.31
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	90.25
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	90.14
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	90.1
COG5098	1128	Chromosome condensation complex Condensin, subunit	89.78
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	89.55
PRK14707	2710	hypothetical protein; Provisional	89.29
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	89.26
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	88.98
PF11538	40	Snurportin1: Snurportin1; InterPro: IPR024721 Snur	88.73
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	88.7
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	88.63
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	88.45
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	88.35
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	88.12
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	87.99
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	87.97
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	87.91
KOG2933	334	consensus Uncharacterized conserved protein [Funct	87.85
PF04821	266	TIMELESS: Timeless protein; InterPro: IPR006906 Th	87.71
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	87.56
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	87.44
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	87.26
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	87.25
KOG2005	878	consensus 26S proteasome regulatory complex, subun	86.58
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	86.53
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	86.52
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	86.48
PRK14707	2710	hypothetical protein; Provisional	86.35
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	86.3
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	86.19
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	86.12
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	86.05
KOG0413	1529	consensus Uncharacterized conserved protein relate	85.72
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	85.7
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	85.48
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	84.49
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	84.32
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	84.15
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	83.64
cd03561	133	VHS VHS domain family; The VHS domain is present i	83.45
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	83.26
KOG2676	478	consensus Uncharacterized conserved protein [Funct	83.07
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	82.93
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	82.2
KOG0301	745	consensus Phospholipase A2-activating protein (con	81.94
cd03561	133	VHS VHS domain family; The VHS domain is present i	81.59
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	81.56
KOG2005	878	consensus 26S proteasome regulatory complex, subun	81.48
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	81.26
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	80.69
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	80.41

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=6.6e-74  Score=486.57  Aligned_cols=369  Identities=56%  Similarity=0.882  Sum_probs=337.4

Q ss_pred             CchhHHhccCCC-C-CCcHHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCC-cccccchhhhhHHh-hhcCHHHHHHH
Q 016714            7 TRAEVRKKGYKT-G-VDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQP-QQQGLDASQNAIEK-KLESIPSMVQG   82 (384)
Q Consensus         7 ~~~~~~~~~~k~-~-~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~~~~~~~~-~~~~~~~~~~~~~~-~~~~l~~lv~~   82 (384)
                      +.++.|+..||+ | +.++|+||+|+++++||||+||+|.+.||||.....+. .++     +-..++ .-..+|.+.+.
T Consensus         5 f~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss-----~i~meqq~~~elp~lt~~   79 (526)
T COG5064           5 FVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESS-----FIPMEQQFYSELPQLTQQ   79 (526)
T ss_pred             cchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhc-----cCchhHHhhhhhHHHHHH
Confidence            678889999998 4 77999999999999999999999999999998322221 111     111111 12367999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCCh
Q 016714           83 VWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAV  162 (384)
Q Consensus        83 l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i  162 (384)
                      |.|+|.+.|+.|+..+|+++|.+..|+++.++++|++|.+++++......-++++|+|+|+|+++++..+++.+++.|++
T Consensus        80 l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AV  159 (526)
T COG5064          80 LFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAV  159 (526)
T ss_pred             HhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCch
Confidence            99999999999999999999999999999999999999999999544336889999999999999999999999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc-hhHHHHHHHHHHhhhhcCC-CCCChh
Q 016714          163 PMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS-KLSMLRNATWTLSNFCRGK-PPTPFE  240 (384)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~-~~~~~~~a~~~L~~L~~~~-~~~~~~  240 (384)
                      |.++.+|.+++.+++++++|+|||+++|++.+|+.++++|++++++.++.++. +..+.+++.|+|+|||+++ |.+...
T Consensus       160 PlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~  239 (526)
T COG5064         160 PLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWS  239 (526)
T ss_pred             HHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchH
Confidence            99999999999999999999999999999999999999999999999996443 6789999999999999998 888888


Q ss_pred             hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 016714          241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ  320 (384)
Q Consensus       241 ~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  320 (384)
                      .+...+|.|.+++.+.|+++..+|||+|+||++++.+.++.+++.|+.++|+++|.+++..++.+|++.+|||++|++.+
T Consensus       240 ~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~Q  319 (526)
T COG5064         240 NISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQ  319 (526)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc------cccCCCccc
Q 016714          321 TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL------FVLHEDFSL  381 (384)
Q Consensus       321 ~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~~~  381 (384)
                      ++.++++|+++.+..+|+++ +..+||+|||+++||++|+.+|+++++++++      +|...+|++
T Consensus       320 TqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~  385 (526)
T COG5064         320 TQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKI  385 (526)
T ss_pred             eehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            99999999999999999999 8899999999999999999999999999999      566666654

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-70  Score=499.15  Aligned_cols=368  Identities=63%  Similarity=0.998  Sum_probs=336.8

Q ss_pred             hhHHhccCCC-CCCcHHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCcccccchhhhhHHhhhcCHHHHHHHhcCCC
Q 016714            9 AEVRKKGYKT-GVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESIPSMVQGVWSED   87 (384)
Q Consensus         9 ~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~l~s~~   87 (384)
                      ...|.++||+ +++++|+||||++..||+||+||+|.|+|||+..+.......     ...........+.++..+.|++
T Consensus         5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~S~~   79 (514)
T KOG0166|consen    5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDEL-----LSDSQSQASNLELMLAALYSDD   79 (514)
T ss_pred             hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccccc-----cchhHHHhhhhHHHHHHHhCCC
Confidence            4567777887 799999999999999999999999999999993222221111     0111111223688999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH
Q 016714           88 PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQ  167 (384)
Q Consensus        88 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~  167 (384)
                      ++.+..+...++++++.+++|+++.++..|++|.|+++|...+++.++++|+|+|+|||++++++++.+++.|++|.|+.
T Consensus        80 ~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~  159 (514)
T KOG0166|consen   80 PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ  159 (514)
T ss_pred             HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH
Confidence            99999999999999999989999999999999999999987666999999999999999999999999999999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-CCCChhhhhchH
Q 016714          168 LLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPTPFEQVKPAL  246 (384)
Q Consensus       168 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~  246 (384)
                      ++.+++..++++|+|+|||++++++.+|+.++.+|++++|+.++.......+.++++|+|+|||+++ |.+.+..+..++
T Consensus       160 Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iL  239 (514)
T KOG0166|consen  160 LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPIL  239 (514)
T ss_pred             HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999965556689999999999999999 889999999999


Q ss_pred             HHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH
Q 016714          247 PILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVID  326 (384)
Q Consensus       247 ~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~  326 (384)
                      |.|..++++.|++++.+|||+++||++++++.++.+++.|+++.|+++|.+.++.++.+|++++|||++|++.+++.+++
T Consensus       240 p~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~  319 (514)
T KOG0166|consen  240 PALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN  319 (514)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc------cccCCCccc
Q 016714          327 NGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL------FVLHEDFSL  381 (384)
Q Consensus       327 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~~~  381 (384)
                      +|+++.|..++...+.+.++++|||+++||++|+++|+++++++|+      +|+++||++
T Consensus       320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~  380 (514)
T KOG0166|consen  320 SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDI  380 (514)
T ss_pred             cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHH
Confidence            9999999999995547789999999999999999999999999999      689999875

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.5e-45  Score=333.67  Aligned_cols=295  Identities=28%  Similarity=0.449  Sum_probs=269.1

Q ss_pred             cCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           74 ESIPSMVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        74 ~~l~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      +.+|.++..|.. .++.+|++|+|+|.++++++ .+..+.++++|.+|.|+.+|.+++ .++++.|.|+|+|++.+++.+
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence            789999999974 55999999999999999987 888889999999999999999999 999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHhhcCCCH-HHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714          153 TRVVIEHGAVPMFVQLLSSGSD-DVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~  231 (384)
                      ++.+++.|++++|+.++...+. .+..++.|+|.|+|.+....-..-.-..+++.|..++ ++.|++++..++|++++|+
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs  265 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT  265 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999988665 7899999999999976521222222334788888888 8999999999999999999


Q ss_pred             cCCCCCChhh-hhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC-CCChhhHHHHHHH
Q 016714          232 RGKPPTPFEQ-VKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM-HPSATVLIPALRT  309 (384)
Q Consensus       232 ~~~~~~~~~~-~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~-~~~~~v~~~a~~~  309 (384)
                      .+.+...... ..|++|.|+.+|.+.++.++..|+++++|++.+++.+++.+++.|+++.|..+|. ++...++..|||+
T Consensus       266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~  345 (514)
T KOG0166|consen  266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT  345 (514)
T ss_pred             cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence            9864444333 3899999999999999999999999999999999999999999999999999998 6677799999999


Q ss_pred             HHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCc
Q 016714          310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDSFHL  372 (384)
Q Consensus       310 l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~~~~  372 (384)
                      |+||+.|+.++++.+++.|++|.|+.+|+++ +.++||||+|+++|+++ |+++|+.+|++.|+
T Consensus       346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~gi  408 (514)
T KOG0166|consen  346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGI  408 (514)
T ss_pred             HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCC
Confidence            9999999999999999999999999999999 89999999999999998 89999999999999

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=4.7e-44  Score=304.61  Aligned_cols=305  Identities=26%  Similarity=0.360  Sum_probs=269.3

Q ss_pred             hcCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           73 LESIPSMVQGVW-SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        73 ~~~l~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      .+.+|++++.+. ....-.+++|+|+|.++.|+. ....+.++++|.+|.++++|.+++ .++++.+.|+|+|++.+++.
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~  190 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEG  190 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchh
Confidence            367999999995 455678999999999999987 777778899999999999999998 89999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714          152 HTRVVIEHGAVPMFVQLLSSGS--DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN  229 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~  229 (384)
                      +++.+++.|++.+++.++.+..  ..+...+.|+|+|+|.+...--+.-.-...++.|.+++ +..|+++...|+|++++
T Consensus       191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSY  269 (526)
T COG5064         191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISY  269 (526)
T ss_pred             HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Confidence            9999999999999999998754  48899999999999964321112212223688888888 88899999999999999


Q ss_pred             hhcCCCCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHH
Q 016714          230 FCRGKPPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALR  308 (384)
Q Consensus       230 L~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~  308 (384)
                      |+.+..+.....+ .++.+.|+++|.+++..++..+++.++|+..+++.+.+.+++.|+++.+-.+|.++...++..|||
T Consensus       270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCW  349 (526)
T COG5064         270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACW  349 (526)
T ss_pred             hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhe
Confidence            9999644444444 777789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc---CCHHHHHHHHhCCc------cccCCCc
Q 016714          309 TVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA---GNRAQIQVHDSFHL------FVLHEDF  379 (384)
Q Consensus       309 ~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~i~~l~~~~~------ll~~~~~  379 (384)
                      +++||++|+.++++.+++.+++|.|+++|.+. +..++|+|||+++|.+.   +.|+++.++++.|+      +|.-.|.
T Consensus       350 TiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN  428 (526)
T COG5064         350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN  428 (526)
T ss_pred             eecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence            99999999999999999999999999999999 99999999999999997   48999999999999      4555555


Q ss_pred             cc
Q 016714          380 SL  381 (384)
Q Consensus       380 ~~  381 (384)
                      +|
T Consensus       429 ki  430 (526)
T COG5064         429 KI  430 (526)
T ss_pred             cc
Confidence            54

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=4.3e-34  Score=297.31  Aligned_cols=305  Identities=21%  Similarity=0.220  Sum_probs=257.1

Q ss_pred             hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      .+.+|.++..|.++++..|..|++.+.++++.. .+++..+++.|+||.|+++|.+++++.+|++|+|+|+||+++++++
T Consensus       188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~  266 (2102)
T PLN03200        188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA  266 (2102)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence            478999999999999999999999998887654 5688899999999999999987554799999999999999999999


Q ss_pred             HHHHHhcCChHHHHHhhcCCC---------HHHHHHHHHHHHhhhCCCCc-----------hhhHH---HhcCChHHHHH
Q 016714          153 TRVVIEHGAVPMFVQLLSSGS---------DDVREQAVWALGNVAGDSPS-----------CRDLV---LSSGALMPLLA  209 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~~~~i---~~~g~i~~L~~  209 (384)
                      +..+++.|++|.|+.++.+++         ..++++|+|+|+|||++.+.           .++..   ...|++.+++.
T Consensus       267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~  346 (2102)
T PLN03200        267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM  346 (2102)
T ss_pred             HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence            999999999999999998644         45699999999999987543           22221   34577777877


Q ss_pred             HhcccchhHHH----HHHHHHHhhhhcCC-CCCChhhh-------------------hchHHHHHHhhccCCHhHHHHHH
Q 016714          210 QLNEHSKLSML----RNATWTLSNFCRGK-PPTPFEQV-------------------KPALPILQRLIHLNDEEVLTDAC  265 (384)
Q Consensus       210 ~l~~~~~~~~~----~~a~~~L~~L~~~~-~~~~~~~~-------------------~~~~~~L~~lL~~~~~~i~~~a~  265 (384)
                      .+ +.++....    ..++|+|.+|++++ |...+..+                   .++++.|+.+|...+.+++.+++
T Consensus       347 l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av  425 (2102)
T PLN03200        347 VF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI  425 (2102)
T ss_pred             hc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence            77 34333332    36789999999987 33322211                   34567788889989999999999


Q ss_pred             HHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhH
Q 016714          266 WALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSI  345 (384)
Q Consensus       266 ~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v  345 (384)
                      |+|++++.++.+..+.+.+.|+++.|+++|.+++..++.+|+++++|++.++++++..++++|++|.|+++|.++ ++.+
T Consensus       426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i  504 (2102)
T PLN03200        426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA  504 (2102)
T ss_pred             HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998 8999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHH-hCCc------cccCCCccc
Q 016714          346 KKEACWTISNITAGNRAQIQVHD-SFHL------FVLHEDFSL  381 (384)
Q Consensus       346 ~~~a~~~L~nl~~~~~~~i~~l~-~~~~------ll~~~~~~~  381 (384)
                      +++|+|+|+|++.+ .++++.++ ++|+      +|+++++++
T Consensus       505 qeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~  546 (2102)
T PLN03200        505 KEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKG  546 (2102)
T ss_pred             HHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence            99999999999995 45566666 7787      577776543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=9.9e-32  Score=279.81  Aligned_cols=288  Identities=17%  Similarity=0.144  Sum_probs=259.4

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      +.++.|+.++...+.+.|..++++|..++.++ .+.++.+.+.|++|.|+++|.+++ +.+|..|+|+|+|++.++++++
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr  481 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK  481 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            67889999999999999999999999997765 778889999999999999999988 8999999999999999989999


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      ..+++.|++|.|+.+|.+++..+++.|+|+|+|++.+++.++..+...|++++|+++| .+.+...+..++|+|.+|+..
T Consensus       482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998888888888899999999999 666889999999999999876


Q ss_pred             CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChH---HHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714          234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPND---KIQAVIEAGVCPRLVELLMHPSATVLIPALRTV  310 (384)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~---~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l  310 (384)
                      ...       ..++.++.+|.++++.++..++.+++++....+.   ..+.....|+++.|+++|.++++.+++.|+++|
T Consensus       561 ~d~-------~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iL  633 (2102)
T PLN03200        561 ADA-------ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVL  633 (2102)
T ss_pred             cch-------hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHH
Confidence            421       2447788999999999999999999888653322   222334579999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCc
Q 016714          311 GNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDSFHL  372 (384)
Q Consensus       311 ~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~~~~  372 (384)
                      +|++++.+++.+.++..|+++.++.+|.++ +.+++++|+|+|+|++. ++.+++.++++.|+
T Consensus       634 snL~a~~~d~~~avv~agaIpPLV~LLss~-~~~v~keAA~AL~nL~~~~~~~q~~~~v~~Ga  695 (2102)
T PLN03200        634 ADIFSSRQDLCESLATDEIINPCIKLLTNN-TEAVATQSARALAALSRSIKENRKVSYAAEDA  695 (2102)
T ss_pred             HHHhcCChHHHHHHHHcCCHHHHHHHHhcC-ChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCC
Confidence            999999999999999999999999999999 89999999999999997 68888889999998

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.9e-26  Score=197.75  Aligned_cols=280  Identities=21%  Similarity=0.322  Sum_probs=249.3

Q ss_pred             hhcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           72 KLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        72 ~~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      ..+++..+.++-++.+..+|..++.+|.++...  .++++.++.+|++|.|++++++++ +++|+.++.+++||+-+ ..
T Consensus       165 ~sGaL~pltrLakskdirvqrnatgaLlnmThs--~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaVd-~~  240 (550)
T KOG4224|consen  165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTHS--RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAVD-RR  240 (550)
T ss_pred             hccchhhhHhhcccchhhHHHHHHHHHHHhhhh--hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhhh-HH
Confidence            347888899988889999999999999999764  688999999999999999999999 99999999999999985 78


Q ss_pred             hHHHHHhcC--ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714          152 HTRVVIEHG--AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN  229 (384)
Q Consensus       152 ~~~~i~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~  229 (384)
                      .++.+.+.+  .+|.|+.++.+++++++.+|..+|+|++.+.. ++..+.+.|.+|.++++| +++.....-....++.|
T Consensus       241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrn  318 (550)
T KOG4224|consen  241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELL-QSPMGPLILASVACIRN  318 (550)
T ss_pred             HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhh
Confidence            888999988  99999999999999999999999999999887 566778999999999999 66655666677788999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCC-HhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHH
Q 016714          230 FCRGKPPTPFEQVKPALPILQRLIHLND-EEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALR  308 (384)
Q Consensus       230 L~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~  308 (384)
                      ++-+.-+.......|++..|+.+|...| ++++..|...|++|+...+.....+.++|.++.+..++.+....++...-.
T Consensus       319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa  398 (550)
T KOG4224|consen  319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA  398 (550)
T ss_pred             cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence            9998655555556899999999998776 559999999999999988888889999999999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714          309 TVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG  359 (384)
Q Consensus       309 ~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  359 (384)
                      +++.++. ++.....+.+.|++|.|+.++.+. +.+++-+|+-+|.|++..
T Consensus       399 c~a~Lal-~d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~  447 (550)
T KOG4224|consen  399 CIAQLAL-NDNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSD  447 (550)
T ss_pred             HHHHHHh-ccccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhh
Confidence            9999887 445556789999999999999998 899999999999999983

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.6e-24  Score=186.98  Aligned_cols=278  Identities=23%  Similarity=0.301  Sum_probs=241.8

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcC--CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAG--VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g--~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      +++|.+++.++++|+.+|+.++.++.++.-.  ...++.+.+.+  ++|.|++++++++ +.++..|.-+|+|++++ .+
T Consensus       208 G~lpvLVsll~s~d~dvqyycttaisnIaVd--~~~Rk~Laqaep~lv~~Lv~Lmd~~s-~kvkcqA~lALrnlasd-t~  283 (550)
T KOG4224|consen  208 GGLPVLVSLLKSGDLDVQYYCTTAISNIAVD--RRARKILAQAEPKLVPALVDLMDDGS-DKVKCQAGLALRNLASD-TE  283 (550)
T ss_pred             CCchhhhhhhccCChhHHHHHHHHhhhhhhh--HHHHHHHHhcccchHHHHHHHHhCCC-hHHHHHHHHHHhhhccc-ch
Confidence            7899999999999999999999999998753  56677788887  9999999999999 89999999999999996 66


Q ss_pred             hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714          152 HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~  231 (384)
                      ....+++.|.+|.++.+|+++.....-..+.|+.||+.+.- +.-.+.+.|++.||+++|....+++++-++..+|.||+
T Consensus       284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLA  362 (550)
T KOG4224|consen  284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA  362 (550)
T ss_pred             hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence            67778899999999999999888888889999999997654 45678899999999999977778889999999999999


Q ss_pred             cCC-CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714          232 RGK-PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV  310 (384)
Q Consensus       232 ~~~-~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l  310 (384)
                      ... .+.....-.+.+|.+..++....-+++.....|++.|+..+..+ ..+.+.|+++.|++++.+.+.+++-.|+.+|
T Consensus       363 asse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k-~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL  441 (550)
T KOG4224|consen  363 ASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK-EALLDSGIIPILIPWTGSESEEVRGNAAAAL  441 (550)
T ss_pred             hhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH-HHHhhcCCcceeecccCccchhhcccHHHHH
Confidence            865 33334444899999999999999999999999999998776554 5789999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHH--HH---cCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          311 GNIVTGDDAQTQFV--ID---NGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       311 ~nl~~~~~~~~~~i--~~---~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      +|++...+.....+  ++   .|+-..|..++.+. +..++.-+.|++..+..
T Consensus       442 ~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~-~~tf~hia~wTI~qLle  493 (550)
T KOG4224|consen  442 INLSSDVEHYARVIEAWDHPVQGIQGRLARFLASH-ELTFRHIARWTIQQLLE  493 (550)
T ss_pred             HhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhh-HHHHHHHHHHHHHHHHH
Confidence            99998655554422  22   36777899999998 88999999999999987

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.85  E-value=1.1e-18  Score=169.28  Aligned_cols=291  Identities=20%  Similarity=0.245  Sum_probs=231.8

Q ss_pred             hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      -+.++.|++.|.+++.++...++..|.++.-.  .++...+.+.|+++.|+.++.+++ .+++..++++|.|++.+ ++.
T Consensus       289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd-~~~  364 (708)
T PF05804_consen  289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFD-PEL  364 (708)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcC-HHH
Confidence            36899999999999999999999999998554  678899999999999999999988 89999999999999995 888


Q ss_pred             HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                      +..+++.|++|.|+.+|.++  ..+..|+.+|++++.+.+ .|..+...++++.+++++...++..+...+++++.||+.
T Consensus       365 R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~  441 (708)
T PF05804_consen  365 RSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL  441 (708)
T ss_pred             HHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc
Confidence            99999999999999999864  466779999999998775 788999999999999988666665555555666666555


Q ss_pred             CCCCC-------------------------------------ChhhhhchHHHHHHhhcc-CCHhHHHHHHHHHHHhccC
Q 016714          233 GKPPT-------------------------------------PFEQVKPALPILQRLIHL-NDEEVLTDACWALSYLSDG  274 (384)
Q Consensus       233 ~~~~~-------------------------------------~~~~~~~~~~~L~~lL~~-~~~~i~~~a~~~l~~l~~~  274 (384)
                      .....                                     ......+.+..|+..+.. ++++...+++++|+||...
T Consensus       442 ~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~  521 (708)
T PF05804_consen  442 NKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP  521 (708)
T ss_pred             CHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence            43211                                     111112333333444433 4678999999999999987


Q ss_pred             ChHHHHHHHHcCChHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCC-chhHHHHHHH
Q 016714          275 PNDKIQAVIEAGVCPRLVELLMHP--SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-KKSIKKEACW  351 (384)
Q Consensus       275 ~~~~~~~~~~~g~~~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~-~~~v~~~a~~  351 (384)
                      +.+....+.+.+++|.|..+|..+  .+++...++..+|.++. ++.....+.+.|+++.|+.+|.... +.++.-..++
T Consensus       522 ~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~  600 (708)
T PF05804_consen  522 DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILY  600 (708)
T ss_pred             CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHH
Confidence            666666666789999999999654  45788899999999986 6667777889999999999998653 6788999999


Q ss_pred             HHHHHhcCCHHHHHHHHh-CCc
Q 016714          352 TISNITAGNRAQIQVHDS-FHL  372 (384)
Q Consensus       352 ~L~nl~~~~~~~i~~l~~-~~~  372 (384)
                      ++..+....+ -.+.++. .++
T Consensus       601 ~f~~ll~h~~-tr~~ll~~~~~  621 (708)
T PF05804_consen  601 VFYQLLFHEE-TREVLLKETEI  621 (708)
T ss_pred             HHHHHHcChH-HHHHHHhccch
Confidence            9999998644 3455543 444

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.81  E-value=4.2e-17  Score=158.45  Aligned_cols=285  Identities=19%  Similarity=0.188  Sum_probs=222.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHH
Q 016714           77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVV  156 (384)
Q Consensus        77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i  156 (384)
                      +++-..+... ..+...+...|.+++..  ......+.+.|+++.|+++|++++ .++...++++|.+++.. .+++..+
T Consensus       253 kk~~~l~~kQ-eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~-~ENK~~m  327 (708)
T PF05804_consen  253 KKLQTLIRKQ-EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIF-KENKDEM  327 (708)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHH
Confidence            3344444443 34555677888888653  455566889999999999999988 89999999999999985 7899999


Q ss_pred             HhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714          157 IEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP  236 (384)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~  236 (384)
                      .+.|+++.|++++.+++..++..++++|.|++.+.. .|..+++.|++|.|+.+|.+   +.....++.+|.++|..+..
T Consensus       328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~  403 (708)
T PF05804_consen  328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEA  403 (708)
T ss_pred             HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhh
Confidence            999999999999999999999999999999998876 78999999999999999943   34556688999999998654


Q ss_pred             CChhhhhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHh---------------------
Q 016714          237 TPFEQVKPALPILQRLIH-LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVEL---------------------  294 (384)
Q Consensus       237 ~~~~~~~~~~~~L~~lL~-~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~l---------------------  294 (384)
                      .......+++|.+++++. ++++.+..++++.+.||+.... ..+.+.+.|+++.|++.                     
T Consensus       404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~  482 (708)
T PF05804_consen  404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDG  482 (708)
T ss_pred             HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence            444445789999988764 4566677777888888876543 34555555555555433                     


Q ss_pred             ----------------cCC-CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCC-chhHHHHHHHHHHHH
Q 016714          295 ----------------LMH-PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-KKSIKKEACWTISNI  356 (384)
Q Consensus       295 ----------------L~~-~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~nl  356 (384)
                                      +.. .+++....++.+|+|+...+..-...+.+.+++|.|..+|..+. .+++.-+++..++.+
T Consensus       483 ~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl  562 (708)
T PF05804_consen  483 PLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL  562 (708)
T ss_pred             hHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence                            222 34567788999999998766556666667899999999998652 557999999999988


Q ss_pred             hcCCHHHHHHHHhCCc
Q 016714          357 TAGNRAQIQVHDSFHL  372 (384)
Q Consensus       357 ~~~~~~~i~~l~~~~~  372 (384)
                      +. .+.....+.++|+
T Consensus       563 a~-d~~~A~lL~~sgl  577 (708)
T PF05804_consen  563 AS-DPECAPLLAKSGL  577 (708)
T ss_pred             HC-CHHHHHHHHhCCh
Confidence            86 6676777788898

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=1.4e-15  Score=130.81  Aligned_cols=282  Identities=13%  Similarity=0.150  Sum_probs=229.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC-CCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChH
Q 016714           85 SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR-HDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVP  163 (384)
Q Consensus        85 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~  163 (384)
                      +.+.....+++.++..+..+.     ..+.+..++..++.+|.. .++.++-.....++..-|..+..+++.+++.++.+
T Consensus       118 ~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            456667777787777665432     356777889999999964 23378888888999998888899999999999999


Q ss_pred             HHHHhhcC-CCHHHHHHHHHHHHhhhCCCC---------chhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          164 MFVQLLSS-GSDDVREQAVWALGNVAGDSP---------SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       164 ~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---------~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      .+...|.. +...+...+.|++.-+..++.         .....+...|++..|++.+.-..+++++..++.+|..|+..
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            99976654 555788899999999876543         23456778888999999997777899999999999999987


Q ss_pred             CCCCChhhhhchHHHHHHhhccCC-H---hHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC--CCChhhHHHHH
Q 016714          234 KPPTPFEQVKPALPILQRLIHLND-E---EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM--HPSATVLIPAL  307 (384)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~~-~---~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~--~~~~~v~~~a~  307 (384)
                      +.........|++..++.++.+.+ .   +....++..|..|+-. +.....+++.|+.+.++.++.  +.+|.+...++
T Consensus       273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~  351 (461)
T KOG4199|consen  273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM  351 (461)
T ss_pred             HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence            554444555899999999997743 3   3556778888888654 456678999999999999983  46788999999


Q ss_pred             HHHHHhhcCChHHHHHHHHcCchHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          308 RTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN-HKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       308 ~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      .+++-++-..+++...+++.|+-...++.+... ....++++|||.+.||+..+.++...++..|+
T Consensus       352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~Gi  417 (461)
T KOG4199|consen  352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGI  417 (461)
T ss_pred             HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccH
Confidence            999999999999999999999999999888754 35679999999999999999999999999998

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=4.3e-16  Score=147.93  Aligned_cols=261  Identities=23%  Similarity=0.362  Sum_probs=228.5

Q ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           76 IPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        76 l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      +..|+..|+.. |+..|++|+..+..+++..+.+....+--.-++|.|+.+|++..+.++...|+++|++++.--|....
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            57778888766 89999999999999988765555555545568999999999988899999999999999999999999


Q ss_pred             HHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          155 VVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      .+++.++||.|+.-|.. +-.++.++++.+|-.|+...+   ..+++.|++...+.+| +--...+++.|+.+.+|+|..
T Consensus       249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Cks  324 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCKS  324 (1051)
T ss_pred             eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999986654 778999999999999998876   4678999999999888 666788999999999999998


Q ss_pred             CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC---ChHHHHHHHHcCChHHHHHhcCCC----ChhhHHHH
Q 016714          234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG---PNDKIQAVIEAGVCPRLVELLMHP----SATVLIPA  306 (384)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~---~~~~~~~~~~~g~~~~L~~lL~~~----~~~v~~~a  306 (384)
                      -+...+..+...+|.|..+|++.|....+.+|-|+.+++++   .++..+.+..+|++....++|.-.    +..+..-.
T Consensus       325 i~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v  404 (1051)
T KOG0168|consen  325 IRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV  404 (1051)
T ss_pred             CCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence            88888888999999999999999999999999999999875   567888899999999999999654    34566778


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC
Q 016714          307 LRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN  340 (384)
Q Consensus       307 ~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~  340 (384)
                      ++.+.-++++++-....+...++...|..+|...
T Consensus       405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY  438 (1051)
T ss_pred             HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence            8999999999998888889999999999999865

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.70  E-value=8.2e-15  Score=139.64  Aligned_cols=280  Identities=24%  Similarity=0.291  Sum_probs=219.2

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch--
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE--  151 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~--  151 (384)
                      ..+|+.+.+|.+.++.+|-.|+..+..++.++ +.-...+.+.|+|+.||.+|.+.+ .+++..|+|+|.|+..++..  
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~  310 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDS  310 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcc
Confidence            46899999999999999999999998775543 555666778999999999999999 99999999999999998776  


Q ss_pred             hHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHH-------------------------------
Q 016714          152 HTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVL-------------------------------  199 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~-------------------------------  199 (384)
                      ++-.+.+.++++.++.+|+. .|.++++....+|+||+..+. ++..++                               
T Consensus       311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHhhcccccccCCCCcccccccce
Confidence            88899999999999999986 788899988888888876522 222211                               


Q ss_pred             -------------------------hcCChHHHHHHhc------------------------------------------
Q 016714          200 -------------------------SSGALMPLLAQLN------------------------------------------  212 (384)
Q Consensus       200 -------------------------~~g~i~~L~~~l~------------------------------------------  212 (384)
                                               ..|.|+.|+..+.                                          
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~  469 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI  469 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence                                     2344555554441                                          


Q ss_pred             -----------------------------------------------------------ccchhHHHHHHHHHHhhhhcC
Q 016714          213 -----------------------------------------------------------EHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       213 -----------------------------------------------------------~~~~~~~~~~a~~~L~~L~~~  233 (384)
                                                                                 ...+..+++.++.+|-||+.+
T Consensus       470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~  549 (717)
T KOG1048|consen  470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG  549 (717)
T ss_pred             cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence                                                                       001112345566666666665


Q ss_pred             CCCCCh----h--hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC------Chh
Q 016714          234 KPPTPF----E--QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP------SAT  301 (384)
Q Consensus       234 ~~~~~~----~--~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~------~~~  301 (384)
                      ......    .  ....++|.|+++|+.+|..+...++.+|.||+.+...+  .++..++++.|+..|-..      +.+
T Consensus       550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk--~ligk~a~~~lv~~Lp~~~~~~~~sed  627 (717)
T KOG1048|consen  550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNK--ELIGKYAIPDLVRCLPGSGPSTSLSED  627 (717)
T ss_pred             CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhh--hhhhcchHHHHHHhCcCCCCCcCchHH
Confidence            421111    1  12567899999999999999999999999999875433  456688999999999543      357


Q ss_pred             hHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          302 VLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       302 v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      +...+|.+|.|++..+......+.+.+.++.|+-+..+..+++..+.|+..+..|=.
T Consensus       628 tv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~  684 (717)
T KOG1048|consen  628 TVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ  684 (717)
T ss_pred             HHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            888999999999998999989999999999999999987677899999888887764

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.70  E-value=1.5e-15  Score=150.99  Aligned_cols=268  Identities=21%  Similarity=0.199  Sum_probs=224.6

Q ss_pred             HHH-HHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC--------C---ChHHHHHHHHHHHHHhcCCchhHHHHH
Q 016714           90 LQL-EATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRH--------D---MPQLQFEAAWALTNVASGTSEHTRVVI  157 (384)
Q Consensus        90 ~~~-~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~--------~---~~~~~~~a~~~L~nl~~~~~~~~~~i~  157 (384)
                      -++ .|+..|-++ +++ ++++..+-+.|++..+-+||.-+        +   +..++.+|+.+|+||+.|+..++..+.
T Consensus       313 H~lcaA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC  390 (2195)
T KOG2122|consen  313 HQLCAALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC  390 (2195)
T ss_pred             hhhHHHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            344 666777776 665 78899999999999998887621        1   247899999999999999888887776


Q ss_pred             h-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCC-CCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC
Q 016714          158 E-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGD-SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP  235 (384)
Q Consensus       158 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~  235 (384)
                      . -|++..++..|.+..+++.+..+.+|.||+-. +...+..+-+.|.+..|..+-.....+..+..++.+|+||+.+..
T Consensus       391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct  470 (2195)
T KOG2122|consen  391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT  470 (2195)
T ss_pred             hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence            5 68999999999999999999999999999842 334677888889999999888677777888999999999998873


Q ss_pred             -C-CChhhhhchHHHHHHhhccC----CHhHHHHHHHHHHHhccC---ChHHHHHHHHcCChHHHHHhcCCCChhhHHHH
Q 016714          236 -P-TPFEQVKPALPILQRLIHLN----DEEVLTDACWALSYLSDG---PNDKIQAVIEAGVCPRLVELLMHPSATVLIPA  306 (384)
Q Consensus       236 -~-~~~~~~~~~~~~L~~lL~~~----~~~i~~~a~~~l~~l~~~---~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a  306 (384)
                       + ..+-.+.|++.+|+.+|...    .-.|++.+-.+|.|.+.+   .+...+.+.++.++..|++.|++.+-.+...+
T Consensus       471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa  550 (2195)
T KOG2122|consen  471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA  550 (2195)
T ss_pred             ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence             3 33445689999999999754    345777777777776643   56677788999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 016714          307 LRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN  360 (384)
Q Consensus       307 ~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~  360 (384)
                      |.+|.||...+++..+.+++.|+++.|..++.+. ...+..-++-+|.|+....
T Consensus       551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence            9999999999999999999999999999999998 8899999999999999744

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.68  E-value=1e-14  Score=126.21  Aligned_cols=197  Identities=19%  Similarity=0.224  Sum_probs=164.2

Q ss_pred             HHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC
Q 016714          113 VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP  192 (384)
Q Consensus       113 ~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~  192 (384)
                      +++.+-++.|+.+|+...+|.++..+..+++|.+. .+..++.+.+.|+++.+..+|.++++.+++.|+++|.|++.+.+
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence            35667789999999976669999999999999877 58999999999999999999999999999999999999998776


Q ss_pred             chhhHHHhcCChHHHHHHhccc-chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 016714          193 SCRDLVLSSGALMPLLAQLNEH-SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYL  271 (384)
Q Consensus       193 ~~~~~i~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l  271 (384)
                       .+..+-.  .++.+++.+... .+..++..++.+|.||+...  .....+...+|.++.+|.+++..++..++++|.+|
T Consensus        87 -n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~--~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   87 -NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN--DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             -hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc--chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence             4454432  466666655343 47789999999999998763  22344567899999999999999999999999999


Q ss_pred             ccCChHHHHHHHHcCChHHHHHhcCCC-ChhhHHHHHHHHHHhhcC
Q 016714          272 SDGPNDKIQAVIEAGVCPRLVELLMHP-SATVLIPALRTVGNIVTG  316 (384)
Q Consensus       272 ~~~~~~~~~~~~~~g~~~~L~~lL~~~-~~~v~~~a~~~l~nl~~~  316 (384)
                      +..+.. ...++.++++..++.++... +.++...++..+.||..+
T Consensus       162 S~np~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  162 SENPDM-TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             ccCHHH-HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            987654 45678889999999999765 678899999999999643

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.66  E-value=8.8e-15  Score=145.56  Aligned_cols=300  Identities=18%  Similarity=0.170  Sum_probs=226.5

Q ss_pred             HhhhcCHHHHHHHhcCCC---HHHHHHHHHHHHHHhcCCCCCc--HHHHHHcCCHHHHHH-------hhcCC------CC
Q 016714           70 EKKLESIPSMVQGVWSED---PALQLEATTQFRKLLSIERSPP--IDEVIKAGVVPRFVE-------FLGRH------DM  131 (384)
Q Consensus        70 ~~~~~~l~~lv~~l~s~~---~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~i~~Lv~-------lL~~~------~~  131 (384)
                      ....+.|+-+++.++..+   .+.+..|-.+|.+++..+.+..  ++.+--..++..+..       +|...      ..
T Consensus       231 mR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~  310 (2195)
T KOG2122|consen  231 MRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPAS  310 (2195)
T ss_pred             HHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence            355688999999998544   5677788889999987652222  122221122222222       22211      11


Q ss_pred             hHHHH-HHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC------------CCHHHHHHHHHHHHhhhCCCCchhhHH
Q 016714          132 PQLQF-EAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS------------GSDDVREQAVWALGNVAGDSPSCRDLV  198 (384)
Q Consensus       132 ~~~~~-~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~------------~~~~v~~~a~~~L~nl~~~~~~~~~~i  198 (384)
                      ..-+. .|+..|..++.+ .+.+..+-+.|++..+-.|+.-            .+..++..+..+|.||..++..++..+
T Consensus       311 ~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L  389 (2195)
T KOG2122|consen  311 DEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL  389 (2195)
T ss_pred             cchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh
Confidence            34455 677778888885 9999999999999998887752            245799999999999997766665554


Q ss_pred             -HhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh--hchHHHHHHh-hccCCHhHHHHHHHHHHHhccC
Q 016714          199 -LSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV--KPALPILQRL-IHLNDEEVLTDACWALSYLSDG  274 (384)
Q Consensus       199 -~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--~~~~~~L~~l-L~~~~~~i~~~a~~~l~~l~~~  274 (384)
                       ...|++..++..| .....++..-.+.+|.||+..........+  .+-+-.|... ++...+..+..++.+||||+.+
T Consensus       390 Cs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAH  468 (2195)
T KOG2122|consen  390 CSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAH  468 (2195)
T ss_pred             hhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhc
Confidence             4568899999999 555667888889999999987533333333  4555555544 5666778899999999999999


Q ss_pred             ChHHHHHHHHc-CChHHHHHhcCCC----ChhhHHHHHHHHHHhh---cCChHHHHHHHHcCchHHHHHHhccCCchhHH
Q 016714          275 PNDKIQAVIEA-GVCPRLVELLMHP----SATVLIPALRTVGNIV---TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIK  346 (384)
Q Consensus       275 ~~~~~~~~~~~-g~~~~L~~lL~~~----~~~v~~~a~~~l~nl~---~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~  346 (384)
                      +.++...|... |.+..|+..|.+.    .-.|.+.+-.+|.|+.   +.++.+.+.+.++++|..|++.|.+. ...+.
T Consensus       469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiV  547 (2195)
T KOG2122|consen  469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIV  547 (2195)
T ss_pred             ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEe
Confidence            88877777764 9999999999765    3467788888888875   44677888899999999999999999 89999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          347 KEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       347 ~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      .++|.+|.||.+.+++..++|++.|.
T Consensus       548 SNaCGTLWNLSAR~p~DQq~LwD~gA  573 (2195)
T KOG2122|consen  548 SNACGTLWNLSARSPEDQQMLWDDGA  573 (2195)
T ss_pred             ecchhhhhhhhcCCHHHHHHHHhccc
Confidence            99999999999999999999999998

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=1.4e-13  Score=118.57  Aligned_cols=281  Identities=16%  Similarity=0.174  Sum_probs=222.2

Q ss_pred             cCHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc-
Q 016714           74 ESIPSMVQGVW--SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS-  150 (384)
Q Consensus        74 ~~l~~lv~~l~--s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~-  150 (384)
                      .++..++..|.  .++.++-..+++.+++-+-.. +-+.+.+.+.++++.+...|.......+..++.|++.-+..+++ 
T Consensus       145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h-E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDi  223 (461)
T KOG4199|consen  145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH-EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDI  223 (461)
T ss_pred             ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh-HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCce
Confidence            45666677665  456777777888888776654 67788899999999999877665535789999999999887532 


Q ss_pred             --------hhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchh---H
Q 016714          151 --------EHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKL---S  218 (384)
Q Consensus       151 --------~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~---~  218 (384)
                              .....+...|++..|+..+.. -++.+...++.+|+.|+..++ +...+.+.|++..|++++.++.+.   +
T Consensus       224 RV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~  302 (461)
T KOG4199|consen  224 RVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRT  302 (461)
T ss_pred             eeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHH
Confidence                    344567788889999998875 457888889999999998877 446678999999999999654433   4


Q ss_pred             HHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh--ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC
Q 016714          219 MLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI--HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM  296 (384)
Q Consensus       219 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~  296 (384)
                      +.+.++.+|+.|+..+..+......++.|.++.++  +++||.+...++.+++.|+-..++....+++.|+-...++.++
T Consensus       303 l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmk  382 (461)
T KOG4199|consen  303 LAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMK  382 (461)
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHH
Confidence            66788999999998876666666699999988876  5678999999999999999999988889999999999999996


Q ss_pred             CC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          297 HP--SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       297 ~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ..  ...++..||+.|.|++..+.++...+++.|+ +.|+..-... .+..+..|--+|..+..
T Consensus       383 ahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~Gi-E~Li~~A~~~-h~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  383 AHPVAAQVQRNACNMIRNIVVRSAENRTILLANGI-EKLIRTAKAN-HETCEAAAKAALRDLGC  444 (461)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccH-HHHHHHHHhc-CccHHHHHHHHHHhcCc
Confidence            43  3578899999999999988888887777654 5555555555 56677777777776654

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.62  E-value=1.3e-14  Score=112.51  Aligned_cols=119  Identities=38%  Similarity=0.625  Sum_probs=110.7

Q ss_pred             HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC
Q 016714          112 EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS  191 (384)
Q Consensus       112 ~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  191 (384)
                      .+++.|+++.++++|.+++ +.++..++++|++++.++++....+++.|+++.++.+|.++++.++..++|+|+|++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4678899999999999888 899999999999999998999999999999999999999999999999999999999988


Q ss_pred             CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          192 PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       192 ~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                      +..+..+.+.|+++.+++.+ ...+..+++.++|+|.+||.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            77888888899999999999 66688999999999999974

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PRK09687 putative lyase; Provisional

Probab=99.60  E-value=4.3e-13  Score=118.70  Aligned_cols=226  Identities=15%  Similarity=0.118  Sum_probs=161.9

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .++.|...|.+.+..++..|++.|..+-.            ..+++.+..++.+++ +.++..++|+|+.+......   
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence            56888888889999999999999886622            125777888888887 89999999999988652111   


Q ss_pred             HHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          155 VVIEHGAVPMFVQL-LSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       155 ~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                         ...+++.|..+ +.++++.|+..|+.+||+++......     ....+..+...+ .+.+..++..++++|..+.. 
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND-  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence               12356777766 66788889999999999986433211     111344455555 56678888888888865542 


Q ss_pred             CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714          234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI  313 (384)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (384)
                               ...++.|+.+|.++++.++..|+.+|+.+...++         .+++.|+..|.+.+..|+..|++.||.+
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     2477888888888888999999999998833332         2356788888888888999999999886


Q ss_pred             hcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          314 VTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       314 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      -.  +         .+++.|+..+.++ +  ++..|+.+|+++..
T Consensus       220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~  250 (280)
T PRK09687        220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD  250 (280)
T ss_pred             CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC
Confidence            32  2         3566777777765 3  56677777777764

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.60  E-value=9e-13  Score=126.72  Aligned_cols=280  Identities=18%  Similarity=0.216  Sum_probs=219.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHH
Q 016714           77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVV  156 (384)
Q Consensus        77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i  156 (384)
                      +.+...+++.+.+....++..|.+++...   ....+ ..+..+.|...|.+++ +.++..+++.|++++.++......+
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~---~~~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~  115 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSAL---SPDSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL  115 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhcc---CHHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence            34777888888877788888899888642   22222 5677899999999998 9999999999999999888888888


Q ss_pred             HhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714          157 IEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP  236 (384)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~  236 (384)
                      .+.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++..++.
T Consensus       116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~  193 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE  193 (503)
T ss_pred             cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence            89999999999999999999999999999999877654 5567777888888888 454566777899999999987644


Q ss_pred             CChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCC--h---hhHHH-HHHH
Q 016714          237 TPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS--A---TVLIP-ALRT  309 (384)
Q Consensus       237 ~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~--~---~v~~~-a~~~  309 (384)
                      ...... .|+++.++..|.++|.-++..++.++..|+. .+...+.+.+.|+++.|..++.+.+  +   .+..+ .+..
T Consensus       194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f  272 (503)
T PF10508_consen  194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF  272 (503)
T ss_pred             HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence            333333 7899999999999999999999999999999 5556778899999999999996532  2   22333 4488


Q ss_pred             HHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 016714          310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVH  367 (384)
Q Consensus       310 l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l  367 (384)
                      .|+++...+...-... ..++..+..++.+. ++..+..|.-+++.|+. +.+-.+.+
T Consensus       273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igs-t~~G~~~L  327 (503)
T PF10508_consen  273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGS-TVEGKQLL  327 (503)
T ss_pred             HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhC-CHHHHHHH
Confidence            8898875443332111 24566777778887 88888888889999986 44444444

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.60  E-value=3.8e-16  Score=114.23  Aligned_cols=91  Identities=45%  Similarity=0.671  Sum_probs=60.2

Q ss_pred             CCchhHHhccCCC-CCCcHHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCccccc-chhhhh-HHhhhcCHHHHHHH
Q 016714            6 STRAEVRKKGYKT-GVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGL-DASQNA-IEKKLESIPSMVQG   82 (384)
Q Consensus         6 ~~~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~lv~~   82 (384)
                      ++..+.|++.||+ |++++|+|+||+++.|+|||+||+|.|.|||+.........+.. +..... .......+|.++..
T Consensus         3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~   82 (97)
T PF01749_consen    3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG   82 (97)
T ss_dssp             ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred             ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence            3566789999999 79999999999999999999999999999999865443322110 011101 11222467899999


Q ss_pred             hcCCCHHHHHHHHH
Q 016714           83 VWSEDPALQLEATT   96 (384)
Q Consensus        83 l~s~~~~~~~~a~~   96 (384)
                      +.|+|+..|+.|+.
T Consensus        83 v~S~d~~~ql~Atq   96 (97)
T PF01749_consen   83 VNSDDPEVQLEATQ   96 (97)
T ss_dssp             HTSSCHHHHHHHHH
T ss_pred             cCCCCHHHHHHhhC
Confidence            99999999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.57  E-value=3.7e-12  Score=122.48  Aligned_cols=285  Identities=18%  Similarity=0.212  Sum_probs=218.3

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      +.++.++..+.+++.++...|+..|.++++.  .+..+.+++.+.++.|..++..++ +.++..+..++.+++..+++..
T Consensus       119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~~~~l~~~~~~~~L~~l~~~~~-~~vR~Rv~el~v~i~~~S~~~~  195 (503)
T PF10508_consen  119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH--PEGLEQLFDSNLLSKLKSLMSQSS-DIVRCRVYELLVEIASHSPEAA  195 (503)
T ss_pred             cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC--chhHHHHhCcchHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCHHHH
Confidence            4688899999999999999999999999864  566667889999999999998877 7899999999999999999999


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhH-----HHHHHHHHHh
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLS-----MLRNATWTLS  228 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~-----~~~~a~~~L~  228 (384)
                      ..+.+.|+++.++..|.++|.-++..++.+|..++. .+.....+.+.|+++.|.+.+.......     ..........
T Consensus       196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g  274 (503)
T PF10508_consen  196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG  274 (503)
T ss_pred             HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence            999999999999999999999999999999999999 5557788899999999999995443222     3334446677


Q ss_pred             hhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc-CC----hHHHHHhcCCCChhhH
Q 016714          229 NFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA-GV----CPRLVELLMHPSATVL  303 (384)
Q Consensus       229 ~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~-g~----~~~L~~lL~~~~~~v~  303 (384)
                      +++...|.........++..+..++.+.|+..+..|+.+++.++...+......... +.    +..+.....+...+++
T Consensus       275 ~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk  354 (503)
T PF10508_consen  275 NLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELK  354 (503)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHH
Confidence            777764443333345566667777889999999999999999987655543331333 23    4444444566777899


Q ss_pred             HHHHHHHHHhhcCChH-H-------HHHHHH---cCchH-HHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Q 016714          304 IPALRTVGNIVTGDDA-Q-------TQFVID---NGVLP-CLYQLLTQNHKKSIKKEACWTISNITAGNRAQ  363 (384)
Q Consensus       304 ~~a~~~l~nl~~~~~~-~-------~~~i~~---~g~l~-~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~  363 (384)
                      ..++.+++++...... .       +....+   .+-.. .+..+++.+ -+++|-.+...+..++...-.+
T Consensus       355 ~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP-F~elr~a~~~~l~~l~~~~Wg~  425 (503)
T PF10508_consen  355 LRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQP-FPELRCAAYRLLQALAAQPWGQ  425 (503)
T ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCC-chHHHHHHHHHHHHHhcCHHHH
Confidence            9999999999543221 1       122222   23444 788888887 7899999988888888744333

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.55  E-value=3e-13  Score=129.12  Aligned_cols=239  Identities=21%  Similarity=0.230  Sum_probs=190.4

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCc--hh
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS--CR  195 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~~  195 (384)
                      -+|..+.+|.+.+ +.+|-.|+.-+-.+|.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+|+|.||..+...  ++
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            4788999999988 89999999999999999999999999999999999999999999999999999999976554  77


Q ss_pred             hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc---c-----------CCHhHH
Q 016714          196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIH---L-----------NDEEVL  261 (384)
Q Consensus       196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~---~-----------~~~~i~  261 (384)
                      -.+.+.++++.++++|....|.++.+.++.+|+||+.. .......+...++.|...+-   +           .+.++.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            88899999999999997778999999999999999998 33444455556665554331   1           135678


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHc-CChHHHHHhcC--------------------------------------------
Q 016714          262 TDACWALSYLSDGPNDKIQAVIEA-GVCPRLVELLM--------------------------------------------  296 (384)
Q Consensus       262 ~~a~~~l~~l~~~~~~~~~~~~~~-g~~~~L~~lL~--------------------------------------------  296 (384)
                      ..+..||.|++....+..+.+.+. |+++.|+..+.                                            
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            889999999988666555555443 55555544443                                            


Q ss_pred             ----------------------------------------------------------CCChhhHHHHHHHHHHhhcCCh
Q 016714          297 ----------------------------------------------------------HPSATVLIPALRTVGNIVTGDD  318 (384)
Q Consensus       297 ----------------------------------------------------------~~~~~v~~~a~~~l~nl~~~~~  318 (384)
                                                                                +.++.+.+.++.+|-|++.+..
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                                                                      1122335778888999987653


Q ss_pred             ----HHHHHH-HHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714          319 ----AQTQFV-IDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG  359 (384)
Q Consensus       319 ----~~~~~i-~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  359 (384)
                          .....+ ....+++.|+.+|..+ ++.+.+.++.+|.|++.+
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d  596 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD  596 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC
Confidence                223333 5778999999999999 899999999999999973

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.55  E-value=1.7e-13  Score=106.29  Aligned_cols=115  Identities=39%  Similarity=0.586  Sum_probs=108.2

Q ss_pred             hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 016714          243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ  322 (384)
Q Consensus       243 ~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~  322 (384)
                      .++++.+++++.++++.++..++++|++++...++....+.+.|+++.++++|.++++.++..++++|+|++...+....
T Consensus         6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence            57899999999999999999999999999999888888889999999999999999999999999999999998888888


Q ss_pred             HHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          323 FVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       323 ~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .+.+.|+++.+.+++... +..+++.++|+|.|+++
T Consensus        86 ~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          86 IVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence            889999999999999998 89999999999999974

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.53  E-value=6.1e-13  Score=115.18  Aligned_cols=194  Identities=21%  Similarity=0.224  Sum_probs=161.9

Q ss_pred             HhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC
Q 016714          157 IEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP  235 (384)
Q Consensus       157 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~  235 (384)
                      .+.+-++.|+.+|+. .++.+++.++.+++|.+..+ ..++.+.+.|+++.+..++ .++++.++..|+|+|.|++...+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChh
Confidence            556678999999985 68999999999999987655 5899999999999999999 77899999999999999998754


Q ss_pred             CCChhhhhchHHHHHHhhcc--CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714          236 PTPFEQVKPALPILQRLIHL--NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI  313 (384)
Q Consensus       236 ~~~~~~~~~~~~~L~~lL~~--~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (384)
                      +.  ..++..++.+.+.+.+  -|.+++..++++|.+|+..++..  .++ .+.++.++.+|.+++..++..++++|.|+
T Consensus        87 n~--~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~--~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   87 NQ--EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH--HML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             hH--HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh--hhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            33  2334567766665433  36789999999999998765432  233 34689999999999999999999999999


Q ss_pred             hcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          314 VTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       314 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      +. ++..+..++..+++..++.++......++-..+.+.+.||..
T Consensus       162 S~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  162 SE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE  205 (254)
T ss_pred             cc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            87 667778899999999999999987678889999999999975

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.53  E-value=8e-13  Score=117.51  Aligned_cols=306  Identities=11%  Similarity=0.022  Sum_probs=227.8

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC------CCChHHHHHHHHHHHHHhc
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR------HDMPQLQFEAAWALTNVAS  147 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~------~~~~~~~~~a~~~L~nl~~  147 (384)
                      +.++.+.+...|++.++..+..++|.+++..+ ++++..+.+.|+-..+++.|+.      +.+.+....++..|.|..-
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            45677777777888999999999999998876 8999999999998877777763      1224677778889999999


Q ss_pred             CCchhHHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHhhhCC-CCchhhHHHhcCChHHHHHHhcccchhHHHHHHH
Q 016714          148 GTSEHTRVVIEHGAVPMFVQLLS--SGSDDVREQAVWALGNVAGD-SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNAT  224 (384)
Q Consensus       148 ~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~  224 (384)
                      ++.+.+..+.+.|+++.|...+.  -++...-+.+....+|+..- .+...+...+......+++++.....+++.+-+.
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            99999999999999999988775  36777778888888887642 2224455666677778888886666777888888


Q ss_pred             HHHhhhhcCCCCCChhhhhchHHHHHHhhcc-CC-------HhHHHHHHHHHHHhccCChHHHHHHHHcC-ChHHHHHhc
Q 016714          225 WTLSNFCRGKPPTPFEQVKPALPILQRLIHL-ND-------EEVLTDACWALSYLSDGPNDKIQAVIEAG-VCPRLVELL  295 (384)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~-~~-------~~i~~~a~~~l~~l~~~~~~~~~~~~~~g-~~~~L~~lL  295 (384)
                      ..|...+.++.-.-.....|.+..+..+++. .+       -.....++....-+..+++.. +.+...+ +++.++.++
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHh
Confidence            8888888875433333346777777777754 11       224455566666666665543 4555555 899999999


Q ss_pred             CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC----CchhHHHHHHHHHHHHhcCCHHHHHHHHhCC
Q 016714          296 MHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN----HKKSIKKEACWTISNITAGNRAQIQVHDSFH  371 (384)
Q Consensus       296 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~----~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~  371 (384)
                      .+++...+..+..+|||++..++ ..-.+++.|.+..|+.++...    .+-.++..++.+|.|++-- ......++.+|
T Consensus       325 ~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG  402 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG  402 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence            99999999999999999998554 555688889999999998752    1556777899999999961 11223577787


Q ss_pred             c------cccCCCccccc
Q 016714          372 L------FVLHEDFSLYF  383 (384)
Q Consensus       372 ~------ll~~~~~~~~~  383 (384)
                      +      .++...+++.|
T Consensus       403 vteaIL~~lk~~~ppv~f  420 (604)
T KOG4500|consen  403 VTEAILLQLKLASPPVTF  420 (604)
T ss_pred             hHHHHHHHHHhcCCcchH
Confidence            7      35555555544

>PRK09687 putative lyase; Provisional

Probab=99.50  E-value=2.8e-12  Score=113.57  Aligned_cols=207  Identities=15%  Similarity=0.128  Sum_probs=162.7

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL  197 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (384)
                      -++.|+.+|.+++ ..++..++++|..+..           ..+++.+..++.++++.++..++|+|+.|-.....    
T Consensus        24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            4788999999988 8999999999998754           24678888899999999999999999998543221    


Q ss_pred             HHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChH
Q 016714          198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPND  277 (384)
Q Consensus       198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~  277 (384)
                        ....++.|..++..++++.++..++.+|.+++...+..    ....++.+...+.++++.++..++++|+.+..  + 
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~-  158 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E-  158 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence              11256677777668888999999999999997653222    12356667778888899999999999987642  1 


Q ss_pred             HHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714          278 KIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT  357 (384)
Q Consensus       278 ~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  357 (384)
                              ..++.|+.+|.++++.++..|+.+||.+..+++         .+.+.|..++.+. ++.+|.+|+|+|+.+-
T Consensus       159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK  220 (280)
T ss_pred             --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence                    247899999999999999999999999954344         2455688889888 9999999999999864


Q ss_pred             cCCHHHHHHHHh
Q 016714          358 AGNRAQIQVHDS  369 (384)
Q Consensus       358 ~~~~~~i~~l~~  369 (384)
                        ++..+..+++
T Consensus       221 --~~~av~~Li~  230 (280)
T PRK09687        221 --DKRVLSVLIK  230 (280)
T ss_pred             --ChhHHHHHHH
Confidence              5566666654

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.42  E-value=6.9e-11  Score=108.99  Aligned_cols=280  Identities=15%  Similarity=0.134  Sum_probs=205.1

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      ....++..|+.+|.-++..|+..+..+++.. ..........-.++.+...|++++....+.-|+.+|..+... ++.|.
T Consensus       102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~  179 (429)
T cd00256         102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRF  179 (429)
T ss_pred             chHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHH
Confidence            4577778888888889999999999998754 222222111124455666666544468888899999999884 88999


Q ss_pred             HHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          155 VVIEHGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                      .+.+.++++.|+.+|+.  .+..++-+++.+++-++.+.+ ..+.....+.++.|++++.....+.+.+-++.+|.||..
T Consensus       180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            99999999999999986  256888899999999987766 445566788999999999888889999999999999998


Q ss_pred             CCC----C--CChhhhhchHHHHHHhhcc---CCHhHHHHHHHH-------HHHhcc------------------C-C--
Q 016714          233 GKP----P--TPFEQVKPALPILQRLIHL---NDEEVLTDACWA-------LSYLSD------------------G-P--  275 (384)
Q Consensus       233 ~~~----~--~~~~~~~~~~~~L~~lL~~---~~~~i~~~a~~~-------l~~l~~------------------~-~--  275 (384)
                      ...    .  .....+...++.++..|..   .|+++..+.-..       +..++.                  + +  
T Consensus       259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~  338 (429)
T cd00256         259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK  338 (429)
T ss_pred             cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence            541    1  1112234345555555543   466554443222       122221                  1 1  


Q ss_pred             --hHHHHHHHHc--CChHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHH
Q 016714          276 --NDKIQAVIEA--GVCPRLVELLM-HPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEAC  350 (384)
Q Consensus       276 --~~~~~~~~~~--g~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~  350 (384)
                        .++...+.+.  .++..|+++|. ++++.+..-||.=||.++...|.....+-+.|+=..++.++.++ +++||.+|.
T Consensus       339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL  417 (429)
T cd00256         339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEAL  417 (429)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHH
Confidence              1233333333  35788999994 56788888999999999999998888888899999999999999 999999999


Q ss_pred             HHHHHHhc
Q 016714          351 WTISNITA  358 (384)
Q Consensus       351 ~~L~nl~~  358 (384)
                      .|+.-+..
T Consensus       418 ~avQklm~  425 (429)
T cd00256         418 LAVQKLMV  425 (429)
T ss_pred             HHHHHHHH
Confidence            99987754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.42  E-value=4.5e-12  Score=112.81  Aligned_cols=279  Identities=15%  Similarity=0.131  Sum_probs=194.9

Q ss_pred             CHHHHHHHHHHHHHHhcCC--CCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHH
Q 016714           87 DPALQLEATTQFRKLLSIE--RSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPM  164 (384)
Q Consensus        87 ~~~~~~~a~~~l~~l~s~~--~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~  164 (384)
                      +..+...+..++.+....+  ++...+..+++|.+..|.+..++++ .++..+++++|+|+|.++.+.|..+.+.|+-..
T Consensus        55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi  133 (604)
T KOG4500|consen   55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQI  133 (604)
T ss_pred             cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence            3445556666666654321  1222333456788888888888887 899999999999999999999999999999888


Q ss_pred             HHHhhcC-------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc-ccchhHHHHH----HHHHHhhhhc
Q 016714          165 FVQLLSS-------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN-EHSKLSMLRN----ATWTLSNFCR  232 (384)
Q Consensus       165 L~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~-~~~~~~~~~~----a~~~L~~L~~  232 (384)
                      ++.+|+.       .+.+....+...|.|..-++...+..+++.|+++.|...+. ..++....+.    ....++-+|.
T Consensus       134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e  213 (604)
T KOG4500|consen  134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE  213 (604)
T ss_pred             hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence            8888864       23567778889999999999999999999999999988874 2233333333    3333333333


Q ss_pred             CCCCCChhhhhchHHHHHHhhcc-CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC-CC-------hhhH
Q 016714          233 GKPPTPFEQVKPALPILQRLIHL-NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH-PS-------ATVL  303 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~-~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~-~~-------~~v~  303 (384)
                      .-  ..+-....+...++++|.+ ..+++..-+...+.+.+.++.-.. .+.+.|.++.+..++.. .+       -...
T Consensus       214 ~~--~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl-~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~  290 (604)
T KOG4500|consen  214 ML--YPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKL-SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF  290 (604)
T ss_pred             hh--hhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceee-ehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence            21  1111223444556666643 356777778888899888766444 46788999999998854 21       1223


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcC-chHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          304 IPALRTVGNIVTGDDAQTQFVIDNG-VLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       304 ~~a~~~l~nl~~~~~~~~~~i~~~g-~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      ..++..+.-+..|++.. +++...+ +++.+...+.+. +....-.+..+++|++.. .+.+.++++.|+
T Consensus       291 k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~  357 (604)
T KOG4500|consen  291 KRIAELDVLLLTGDESM-QKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARR-DDICIQLVQKDF  357 (604)
T ss_pred             HhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhcc-chHHHHHHHHHH
Confidence            34555555566666554 3444444 899999999999 899999999999999984 455666777776

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.36  E-value=2.8e-10  Score=117.18  Aligned_cols=239  Identities=19%  Similarity=0.175  Sum_probs=147.8

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      ..++.|+..|.++++.++..|+..|..+..            .+.++.|+..|++++ +.++..|+.+|..+....    
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~----  683 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL----  683 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc----
Confidence            357889999999999999999999987632            236888999998887 899999999998774311    


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC------------chhhH----HHhcCChHHHHHHhcccchh
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP------------SCRDL----VLSSGALMPLLAQLNEHSKL  217 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~------------~~~~~----i~~~g~i~~L~~~l~~~~~~  217 (384)
                            ...+.|...|.++++.++..++.+|+.+....+            ..|..    +...+..+.|+..+ .+.+.
T Consensus       684 ------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l-~D~~~  756 (897)
T PRK13800        684 ------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAA-TDENR  756 (897)
T ss_pred             ------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHh-cCCCH
Confidence                  112344455555555555555555554421110            00000    00001122333444 44455


Q ss_pred             HHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC
Q 016714          218 SMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH  297 (384)
Q Consensus       218 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~  297 (384)
                      .++..++.+|..+....+        ..++.|..++.++|+.++..++.+|+.+....          .+.+.+...|.+
T Consensus       757 ~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d  818 (897)
T PRK13800        757 EVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRA  818 (897)
T ss_pred             HHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcC
Confidence            555555555555543311        12556666677777777777777777663321          112446666677


Q ss_pred             CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 016714          298 PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVH  367 (384)
Q Consensus       298 ~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l  367 (384)
                      +++.++..|+.+|+.+..           ...++.|..+|.++ +..||++|+++|+.+ .+++.....+
T Consensus       819 ~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~-~~~~~a~~~L  875 (897)
T PRK13800        819 SAWQVRQGAARALAGAAA-----------DVAVPALVEALTDP-HLDVRKAAVLALTRW-PGDPAARDAL  875 (897)
T ss_pred             CChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC-CHHHHHHHHHHHhcc-CCCHHHHHHH
Confidence            777777777777776532           13457788899888 899999999999997 3455554444

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=6.9e-10  Score=100.43  Aligned_cols=287  Identities=14%  Similarity=0.152  Sum_probs=202.7

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      ..+..+++.|..++.++.......|.++.-.  .++...+.+.|++..|++++...+ ++++..++..|.|++.+ ...+
T Consensus       304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD-~glr  379 (791)
T KOG1222|consen  304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFD-SGLR  379 (791)
T ss_pred             hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhcccc-cccc
Confidence            3567889999999988888788888877554  678888999999999999999988 99999999999999996 7788


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      ..+++.|.+|.+..+|.++..  ...|+..|+.++.++. .+.++....+++.+.+.+....+.++-.......-|||-+
T Consensus       380 ~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln  456 (791)
T KOG1222|consen  380 PKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN  456 (791)
T ss_pred             HHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence            899999999999999987543  3457788888888776 6788888888888888776666655555555445566655


Q ss_pred             CCCCChhhhhch-------------------------------------HHHHHHhhcc-CCHhHHHHHHHHHHHhccCC
Q 016714          234 KPPTPFEQVKPA-------------------------------------LPILQRLIHL-NDEEVLTDACWALSYLSDGP  275 (384)
Q Consensus       234 ~~~~~~~~~~~~-------------------------------------~~~L~~lL~~-~~~~i~~~a~~~l~~l~~~~  275 (384)
                      +.+.....-...                                     +.-|...+.. +++....++++++++|.-.+
T Consensus       457 kRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~d  536 (791)
T KOG1222|consen  457 KRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTD  536 (791)
T ss_pred             cccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCC
Confidence            432221111111                                     1111112222 33456677777777776521


Q ss_pred             -------------------------------------------hHHHHHHHHcCChHHHHHhcCC--CChhhHHHHHHHH
Q 016714          276 -------------------------------------------NDKIQAVIEAGVCPRLVELLMH--PSATVLIPALRTV  310 (384)
Q Consensus       276 -------------------------------------------~~~~~~~~~~g~~~~L~~lL~~--~~~~v~~~a~~~l  310 (384)
                                                                 ......+..+|+++.|+++|+.  .+.++....+.++
T Consensus       537 ldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF  616 (791)
T KOG1222|consen  537 LDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVF  616 (791)
T ss_pred             CCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence                                                       1222233456788888888853  4556667777777


Q ss_pred             HHhhcCChHHHHHHHHc-CchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Q 016714          311 GNIVTGDDAQTQFVIDN-GVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDS  369 (384)
Q Consensus       311 ~nl~~~~~~~~~~i~~~-g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~  369 (384)
                      ..+..+ +...+.+++. ..-.++++++.+. +.++|+.+-.+|--|+..+++-.+++..
T Consensus       617 ~Q~l~H-e~tr~~miket~~~AylIDLMHDk-N~eiRkVCDn~LdIiae~d~EWAKrI~~  674 (791)
T KOG1222|consen  617 LQFLKH-ELTRRLMIKETALGAYLIDLMHDK-NAEIRKVCDNALDIIAEHDKEWAKRIAG  674 (791)
T ss_pred             HHHHHH-HHHHHHHHhhccchHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence            777765 3344555554 4455689999888 8999999999999888877776655543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=4e-10  Score=99.28  Aligned_cols=187  Identities=22%  Similarity=0.242  Sum_probs=155.2

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCCh
Q 016714           83 VWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAV  162 (384)
Q Consensus        83 l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i  162 (384)
                      -.+.+.+.+..|+..|..++-.  -++...++..|+...++.++++++ +.+|..|+|+|+.++..|+.....+++.|+.
T Consensus        92 ~~s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L  168 (342)
T KOG2160|consen   92 SSSVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGAL  168 (342)
T ss_pred             cccCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence            3466788999999999988753  788889999999999999999999 9999999999999999999999999999999


Q ss_pred             HHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhccc-chhHHHHHHHHHHhhhhcCCCCCChh
Q 016714          163 PMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEH-SKLSMLRNATWTLSNFCRGKPPTPFE  240 (384)
Q Consensus       163 ~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~  240 (384)
                      +.|+..+.+ ++..++..|++|++.+..+.+...+.+...++...|...+... .+..+++.++..+..|..........
T Consensus       169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~  248 (342)
T KOG2160|consen  169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI  248 (342)
T ss_pred             HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence            999999986 4567889999999999999999999999999999999999543 57889999999999999876433333


Q ss_pred             hhhchHH-HHHHhhccCCHhHHHHHHHHHHHhc
Q 016714          241 QVKPALP-ILQRLIHLNDEEVLTDACWALSYLS  272 (384)
Q Consensus       241 ~~~~~~~-~L~~lL~~~~~~i~~~a~~~l~~l~  272 (384)
                      .....++ .+..+..+.+.++...++.++..+.
T Consensus       249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence            3333344 4555566667777777777665554

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.26  E-value=8.8e-10  Score=98.40  Aligned_cols=280  Identities=14%  Similarity=0.098  Sum_probs=204.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      -+.+++.+...+.-+...+.+.+.++.+.. +.........=....|...++++.+++...-|++||..+... ++.|..
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~  193 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYA  193 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhe
Confidence            467788888888888887888888887754 222211111112334455555544478888899999999885 888999


Q ss_pred             HHhcCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          156 VIEHGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       156 i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      ++..+++..++..+.+  .+-.++-+.+.+++-+.-.++.. +.+...+.|+.|..++..+..+.+.+-++.++.|++..
T Consensus       194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9998999999998843  56788889999999998776644 56677789999999998888899999999999999997


Q ss_pred             CCCCC------hhhhhchHHHHHHhhc---cCCHhHHHHHHHHHHHh-------ccCC----------------------
Q 016714          234 KPPTP------FEQVKPALPILQRLIH---LNDEEVLTDACWALSYL-------SDGP----------------------  275 (384)
Q Consensus       234 ~~~~~------~~~~~~~~~~L~~lL~---~~~~~i~~~a~~~l~~l-------~~~~----------------------  275 (384)
                      .+...      ...+.+-++..++.|.   .+|+++..+.-..-..|       +..+                      
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F  352 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF  352 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence            64322      1223444555555553   34666655544332222       2211                      


Q ss_pred             -hHHHHHHHHc--CChHHHHHhcCCC-ChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHH
Q 016714          276 -NDKIQAVIEA--GVCPRLVELLMHP-SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACW  351 (384)
Q Consensus       276 -~~~~~~~~~~--g~~~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~  351 (384)
                       .+++..+.+.  .++..|+++|..+ +|.+..-||.=||..+...|+....+.+.|+=..+++++.++ +++||.+|..
T Consensus       353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl  431 (442)
T KOG2759|consen  353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL  431 (442)
T ss_pred             HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence             1222333333  5688999999665 588889999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHhcC
Q 016714          352 TISNITAG  359 (384)
Q Consensus       352 ~L~nl~~~  359 (384)
                      ++.-+..+
T Consensus       432 avQ~lm~~  439 (442)
T KOG2759|consen  432 AVQKLMVH  439 (442)
T ss_pred             HHHHHHhh
Confidence            98877643

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.21  E-value=4.3e-09  Score=98.80  Aligned_cols=113  Identities=20%  Similarity=0.202  Sum_probs=95.7

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCCchhHHHHH
Q 016714           79 MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD-MPQLQFEAAWALTNVASGTSEHTRVVI  157 (384)
Q Consensus        79 lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i~  157 (384)
                      ++..+.+.+++..+.|..-..+++.+. +++...+++.|.++.+..++...+ .++++.+.+-+++..+.+.......+.
T Consensus        14 ~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL   92 (678)
T KOG1293|consen   14 LLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL   92 (678)
T ss_pred             HHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence            344556678888889999999998875 666668999999999999997654 367787888888888888888999999


Q ss_pred             hcCChHHHHHhhcCCC-HHHHHHHHHHHHhhhCCCC
Q 016714          158 EHGAVPMFVQLLSSGS-DDVREQAVWALGNVAGDSP  192 (384)
Q Consensus       158 ~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~  192 (384)
                      +.+.++.|..+|.+++ ..+++.++.++.++...++
T Consensus        93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~  128 (678)
T KOG1293|consen   93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSK  128 (678)
T ss_pred             HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccc
Confidence            9999999999999988 8999999999999987664

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.3e-09  Score=104.55  Aligned_cols=250  Identities=17%  Similarity=0.159  Sum_probs=199.9

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHH-HhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhh
Q 016714          119 VPRFVEFLGRHDMPQLQFEAAWALTN-VASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRD  196 (384)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~n-l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~  196 (384)
                      +..|++-|....++..|.+|+.-|+. |.-++.+...-+--.-.+|.|+.+|+. .+.++.-.|+.||.+++.-.|....
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            55566666655338888888877765 555666655545445689999999987 5789999999999999988777778


Q ss_pred             HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC-C
Q 016714          197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG-P  275 (384)
Q Consensus       197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~-~  275 (384)
                      .+++.++||.|+..|..-.-.++.+.++.+|-.+++..|  ......|.+...+.+|.--...++..|+.+..|+|.. .
T Consensus       249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            888999999999999777778899999999999999743  3344478888888888777788999999999999975 2


Q ss_pred             hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC---ChHHHHHHHHcCchHHHHHHhccCC---chhHHHHH
Q 016714          276 NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG---DDAQTQFVIDNGVLPCLYQLLTQNH---KKSIKKEA  349 (384)
Q Consensus       276 ~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~---~~~~~~~i~~~g~l~~L~~ll~~~~---~~~v~~~a  349 (384)
                      .+....++  ..+|.|..+|.+.+.+..+.++-++..++.+   .++..+.+..+|++....+++.-.+   +..+.--.
T Consensus       327 sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v  404 (1051)
T KOG0168|consen  327 SDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV  404 (1051)
T ss_pred             CccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence            23333444  4599999999999999999999999999754   5677788889999999999998653   33455667


Q ss_pred             HHHHHHHhcCCHHHHHHHHhCCc
Q 016714          350 CWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       350 ~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      ...|+-++.+++.....+...||
T Consensus       405 Irmls~msS~~pl~~~tl~k~~I  427 (1051)
T KOG0168|consen  405 IRMLSLMSSGSPLLFRTLLKLDI  427 (1051)
T ss_pred             HHHHHHHccCChHHHHHHHHhhH
Confidence            88899999999999999999988

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.20  E-value=7.3e-09  Score=106.85  Aligned_cols=229  Identities=18%  Similarity=0.179  Sum_probs=154.9

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc---
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS---  150 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~---  150 (384)
                      ..++.|+..|.++++.++..|+..|..+....  +         ..+.|...|++++ +.++..|+.+|..+..++.   
T Consensus       652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~--~---------~~~~L~~~L~~~d-~~VR~~A~~aL~~~~~~~~~~l  719 (897)
T PRK13800        652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVL--P---------PAPALRDHLGSPD-PVVRAAALDVLRALRAGDAALF  719 (897)
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc--C---------chHHHHHHhcCCC-HHHHHHHHHHHHhhccCCHHHH
Confidence            45788999999999999999999988774211  1         1233444444444 5555555555544321110   


Q ss_pred             ---------hhHHH----HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchh
Q 016714          151 ---------EHTRV----VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKL  217 (384)
Q Consensus       151 ---------~~~~~----i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~  217 (384)
                               ..+..    +...+..+.|..++.++++.++..++.+|+.+....+         ..++.|..++ .+.++
T Consensus       720 ~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll-~D~d~  789 (897)
T PRK13800        720 AAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALT-GDPDP  789 (897)
T ss_pred             HHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHh-cCCCH
Confidence                     00000    0011223455666677777777777777776643322         1356777777 77789


Q ss_pred             HHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC
Q 016714          218 SMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH  297 (384)
Q Consensus       218 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~  297 (384)
                      .++..++.+|..+...         ....+.+...|.++++.++..|+++|+.+..           ...++.|+.+|.+
T Consensus       790 ~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D  849 (897)
T PRK13800        790 LVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTD  849 (897)
T ss_pred             HHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcC
Confidence            9999999999888543         1233567888999999999999999998742           1235899999999


Q ss_pred             CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHH
Q 016714          298 PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN  355 (384)
Q Consensus       298 ~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  355 (384)
                      ++..|+..|+++|+.+. +++.         ..+.|...+++. +..||++|..+|..
T Consensus       850 ~~~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~-d~~Vr~~A~~aL~~  896 (897)
T PRK13800        850 PHLDVRKAAVLALTRWP-GDPA---------ARDALTTALTDS-DADVRAYARRALAH  896 (897)
T ss_pred             CCHHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhCC-CHHHHHHHHHHHhh
Confidence            99999999999999972 2332         345677889888 99999999999863

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.17  E-value=1.1e-09  Score=107.36  Aligned_cols=255  Identities=18%  Similarity=0.184  Sum_probs=142.3

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      ...+.+++.+.+++...+.-+--.+..+...+  +..-.+    +++.+.+=|.+++ +.++..|++++++++.  ++..
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~  112 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA  112 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence            35677777777777777776666666554322  211111    4566666677766 7778888888887763  3333


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      ..     .++.+..++.++++.+|..|+.++..+....|..   +-.. .++.+..++ .+.++.+..+|+.++..+ ..
T Consensus       113 ~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  113 EP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             HH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred             hH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence            22     3566777777777788888888888777655432   1122 466666777 666677777777777777 21


Q ss_pred             CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714          234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI  313 (384)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (384)
                      .+..........++.|.+++...++..+..++.++..++.........   ..+++.+..++.+.++.+...+++++..+
T Consensus       182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l  258 (526)
T PF01602_consen  182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL  258 (526)
T ss_dssp             THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            111101233445555555556667777777777777766554433311   22344444444444455555555555544


Q ss_pred             hcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          314 VTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       314 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ....+      .-..+++.|..++.++ ++.++-.++.++..++.
T Consensus       259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~  296 (526)
T PF01602_consen  259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQ  296 (526)
T ss_dssp             SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCC
T ss_pred             hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhc
Confidence            43221      1112344455555544 44455555555555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=1.1e-09  Score=104.15  Aligned_cols=277  Identities=18%  Similarity=0.214  Sum_probs=199.1

Q ss_pred             HHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           76 IPSMVQGVWS--EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        76 l~~lv~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      +..++.....  ++..+++.|+.+|.+-+-+.+...-.+.-..=++...++.-+.++ .+++..|..||..|.+-+.+..
T Consensus       174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m  252 (859)
T KOG1241|consen  174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFM  252 (859)
T ss_pred             HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555553  346789999999988765542222222223345666777777777 8999999999999999888888


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCc----------------hhhH--HHhcCChHHHHHHhccc-
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS----------------CRDL--VLSSGALMPLLAQLNEH-  214 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~----------------~~~~--i~~~g~i~~L~~~l~~~-  214 (384)
                      ........++.-+.-++++++++.-+++...+++|.+.-.                ....  -.-.+.+|.|+++|... 
T Consensus       253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd  332 (859)
T KOG1241|consen  253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD  332 (859)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence            8888777788888888999999999999999998842211                0000  01124677888888542 


Q ss_pred             -----chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChH
Q 016714          215 -----SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCP  289 (384)
Q Consensus       215 -----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~  289 (384)
                           .+......+..+|.-+++...+   ..+..++|.+-.-++++|..-+..+.-+++.+..+++.....-+-.+++|
T Consensus       333 e~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp  409 (859)
T KOG1241|consen  333 EDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP  409 (859)
T ss_pred             CCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence                 1233455555555555544322   23347788888889999999999999999999998776555545568899


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH-HHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          290 RLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ-FVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .++.++.+++-.++..+.|++|.++.+.++.+. ...-.+.++.++.-|.+.  |.+..++||++.+++.
T Consensus       410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De--Prva~N~CWAf~~Lae  477 (859)
T KOG1241|consen  410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE--PRVASNVCWAFISLAE  477 (859)
T ss_pred             HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC--chHHHHHHHHHHHHHH
Confidence            999999988888999999999999987664432 222345677777777654  8899999999999993

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=6e-10  Score=104.34  Aligned_cols=262  Identities=18%  Similarity=0.217  Sum_probs=178.0

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc--------CCHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA--------GVVPRFVEFLGRHDMPQLQFEAAWALTNV  145 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~--------g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl  145 (384)
                      +.+|.|.++|.+.+...+.-|..+|.+++-.+     ..+++.        -.+|.++++.++++ |.+|.+|..|+...
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-----a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~  201 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-----AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQF  201 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-----HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhhe
Confidence            45899999999999999999999999986432     122222        36899999999998 99999999999776


Q ss_pred             hcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHh--cCChHHHHHHhcccchhHHHHHH
Q 016714          146 ASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLS--SGALMPLLAQLNEHSKLSMLRNA  223 (384)
Q Consensus       146 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~--~g~i~~L~~~l~~~~~~~~~~~a  223 (384)
                      .-..+.....-++ ..+..+..+-.++++++|.+.+.+|.-+..-.+.   .+..  .++++.++..- ++.|+++.-.|
T Consensus       202 i~~~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~t-qd~dE~VALEA  276 (885)
T KOG2023|consen  202 IIIQTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRT-QDVDENVALEA  276 (885)
T ss_pred             eecCcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHc-cCcchhHHHHH
Confidence            5533332222222 3456666777789999999999999998754442   2221  23445555554 66788899999


Q ss_pred             HHHHhhhhcCCCCCChhhh----hchHHHHHHhhccCC------------------------------------------
Q 016714          224 TWTLSNFCRGKPPTPFEQV----KPALPILQRLIHLND------------------------------------------  257 (384)
Q Consensus       224 ~~~L~~L~~~~~~~~~~~~----~~~~~~L~~lL~~~~------------------------------------------  257 (384)
                      |.....++..+  ......    ..++|.|+.-+..++                                          
T Consensus       277 CEFwla~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eD  354 (885)
T KOG2023|consen  277 CEFWLALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDED  354 (885)
T ss_pred             HHHHHHHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccc
Confidence            99998899874  223333    556666654332111                                          


Q ss_pred             --------------HhHHHHHHHHHHHhccCChHHHHHHHHcC----ChHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 016714          258 --------------EEVLTDACWALSYLSDGPNDKIQAVIEAG----VCPRLVELLMHPSATVLIPALRTVGNIVTGDDA  319 (384)
Q Consensus       258 --------------~~i~~~a~~~l~~l~~~~~~~~~~~~~~g----~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~  319 (384)
                                    ..++..++.+|.-|+.        +....    ++|.|-+.|.++...+++.++.++|.|+.|.-.
T Consensus       355 dddDe~DDdD~~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~  426 (885)
T KOG2023|consen  355 DDDDEDDDDDAFSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ  426 (885)
T ss_pred             ccccccccccccccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh
Confidence                          1233333333333332        22223    356666666788899999999999999987643


Q ss_pred             HHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          320 QTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       320 ~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ..-.-+ ..++|.|+.+|.+. .+-||+-+||+|+..+.
T Consensus       427 g~~p~L-peLip~l~~~L~DK-kplVRsITCWTLsRys~  463 (885)
T KOG2023|consen  427 GFVPHL-PELIPFLLSLLDDK-KPLVRSITCWTLSRYSK  463 (885)
T ss_pred             hcccch-HHHHHHHHHHhccC-ccceeeeeeeeHhhhhh
Confidence            321111 14789999999998 99999999999999884

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=3e-08  Score=98.89  Aligned_cols=287  Identities=17%  Similarity=0.186  Sum_probs=186.5

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .++-+.+..+|.++..|..|+..|..+...-.+.....  -..+.+.|.+.+.+++.+ ++..|+++++.++...+..+.
T Consensus       119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~--~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~  195 (1075)
T KOG2171|consen  119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH--LDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKS  195 (1075)
T ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh--HHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchH
Confidence            36667777789999999999999887643210111100  012455666677777745 999999999998876542232


Q ss_pred             HHHhc-CChHHHHHhhc----CCCHHHHHHHHHHHHhhhCCCCch-hhHHHhcCChHHHHHHhccc-chhHHHHHHHHHH
Q 016714          155 VVIEH-GAVPMFVQLLS----SGSDDVREQAVWALGNVAGDSPSC-RDLVLSSGALMPLLAQLNEH-SKLSMLRNATWTL  227 (384)
Q Consensus       155 ~i~~~-g~i~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~-~~~i~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L  227 (384)
                      .+-.. ..+|.++..+.    .++.+....++.+|-.++...+.+ +..+.+  ++...+....+. -+..++..|+..|
T Consensus       196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~i  273 (1075)
T KOG2171|consen  196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEFL  273 (1075)
T ss_pred             HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHHH
Confidence            22221 24666665554    466666677777777777655432 222111  222222222111 1222222222222


Q ss_pred             ------------------------------------------------------------hhhhcCCCCCChhhhhchHH
Q 016714          228 ------------------------------------------------------------SNFCRGKPPTPFEQVKPALP  247 (384)
Q Consensus       228 ------------------------------------------------------------~~L~~~~~~~~~~~~~~~~~  247 (384)
                                                                                  -.++.+-+.  ......+++
T Consensus       274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g--~~v~p~~~~  351 (1075)
T KOG2171|consen  274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG--KQVLPPLFE  351 (1075)
T ss_pred             HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh--hhehHHHHH
Confidence                                                                        222222110  111234566


Q ss_pred             HHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 016714          248 ILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN  327 (384)
Q Consensus       248 ~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~  327 (384)
                      .+-.+|++.++.-+..++.+|+.++.+..+.....+ ..+++.++..|.++++.|+..||.++|.+++.-....+.--..
T Consensus       352 ~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e  430 (1075)
T KOG2171|consen  352 ALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE  430 (1075)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence            677788999999999999999999999887665533 3678899999999999999999999999998766666666666


Q ss_pred             CchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHh
Q 016714          328 GVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDS  369 (384)
Q Consensus       328 g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~  369 (384)
                      -+++.|+..+.+...+.++..|+-++-|+.. ..++.+...++
T Consensus       431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd  473 (1075)
T KOG2171|consen  431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD  473 (1075)
T ss_pred             hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            7888999999998788999999999999997 56666665544

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=5.6e-09  Score=92.14  Aligned_cols=183  Identities=18%  Similarity=0.232  Sum_probs=153.7

Q ss_pred             hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHh
Q 016714          132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQL  211 (384)
Q Consensus       132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l  211 (384)
                      ++-+..|..-|..++. +-++-..++..|+...++.++.+.+..+|+.|+|+++..+.++|..+..+++.|++..|+..+
T Consensus        97 le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l  175 (342)
T KOG2160|consen   97 LEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL  175 (342)
T ss_pred             HHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence            6778888888888877 478888899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHhhhhcCCCCCChh-hhhchHHHHHHhhcc--CCHhHHHHHHHHHHHhccCChHHHHHHHHcCCh
Q 016714          212 NEHSKLSMLRNATWTLSNFCRGKPPTPFE-QVKPALPILQRLIHL--NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVC  288 (384)
Q Consensus       212 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~~~~L~~lL~~--~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~  288 (384)
                      ..+.+..++..++++++.|.++.+..... ...++...|...+++  .+...+..++..++++..........+...+..
T Consensus       176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~  255 (342)
T KOG2160|consen  176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ  255 (342)
T ss_pred             ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence            76777788899999999999987443333 335668899999988  567788999999999998876665555566777


Q ss_pred             HHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714          289 PRLVELLMHPSATVLIPALRTVGNIVT  315 (384)
Q Consensus       289 ~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (384)
                      ..+..+....+..+.+.++.++.....
T Consensus       256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  256 RVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            777777777777888888887777654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.09  E-value=7.3e-09  Score=101.53  Aligned_cols=250  Identities=17%  Similarity=0.211  Sum_probs=180.5

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .+..+.+.+.++++.++..|++++.++..   .+    +++ .+++.+.+++.+++ +.+|..|+.++..+...+++.. 
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~----~~~-~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~-  149 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRT---PE----MAE-PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLV-  149 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HH----HHH-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCH-
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cc----hhh-HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHH-
Confidence            56777888889999999999999998853   12    222 25888999999988 9999999999999987555432 


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc---ccchhHHHHHHHHHHhhhh
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN---EHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~L~  231 (384)
                        ... .++.+..+|.+.++.++..|+.++..+ ...+..    .. ..++.++..|.   ...++-.+..++.+|..++
T Consensus       150 --~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~----~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~  220 (526)
T PF01602_consen  150 --EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDS----YK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA  220 (526)
T ss_dssp             --HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHH----HT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred             --HHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcch----hh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence              222 589999999999999999999999999 222211    00 23444444443   5667878888898888887


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714          232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG  311 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~  311 (384)
                      ...+....  ...+++.+..++++.++.++..++.++..+.....      .-..+++.|..+|.++++.++..++.+|.
T Consensus       221 ~~~~~~~~--~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~  292 (526)
T PF01602_consen  221 PMEPEDAD--KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLS  292 (526)
T ss_dssp             SSSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred             cCChhhhh--HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHH
Confidence            65321110  05678888888888899999999999998876543      22346788999999888899999999999


Q ss_pred             HhhcCChHHHHHHHHcCchHHHHHHhc-cCCchhHHHHHHHHHHHHhc
Q 016714          312 NIVTGDDAQTQFVIDNGVLPCLYQLLT-QNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       312 nl~~~~~~~~~~i~~~g~l~~L~~ll~-~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .++...+..    +. . .......+. ++ +..+|..+.-+|.+++.
T Consensus       293 ~l~~~~~~~----v~-~-~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~  333 (526)
T PF01602_consen  293 QLAQSNPPA----VF-N-QSLILFFLLYDD-DPSIRKKALDLLYKLAN  333 (526)
T ss_dssp             HHCCHCHHH----HG-T-HHHHHHHHHCSS-SHHHHHHHHHHHHHH--
T ss_pred             Hhhcccchh----hh-h-hhhhhheecCCC-ChhHHHHHHHHHhhccc
Confidence            998766222    11 1 222233444 55 78899999888888884

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.07  E-value=6.2e-09  Score=94.50  Aligned_cols=232  Identities=16%  Similarity=0.191  Sum_probs=161.0

Q ss_pred             CHHHHHHhhcCC-CChHHHHHHHHHHHHHhcCCchhHHHHHhc------CChHHHHHhhcCCCHHHHHHHHHHHHhhhCC
Q 016714          118 VVPRFVEFLGRH-DMPQLQFEAAWALTNVASGTSEHTRVVIEH------GAVPMFVQLLSSGSDDVREQAVWALGNVAGD  190 (384)
Q Consensus       118 ~i~~Lv~lL~~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~------g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~  190 (384)
                      ....++.+|+.- .++++....+..+..+..+.+...+.+...      .....++.++.+++..+...|+..|..++..
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence            455666666544 348999999999999999888777777762      2678888999999999999999999999877


Q ss_pred             CCchhhHHHhcCChHHHHHHhcc---cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh-----c--cCCHhH
Q 016714          191 SPSCRDLVLSSGALMPLLAQLNE---HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI-----H--LNDEEV  260 (384)
Q Consensus       191 ~~~~~~~i~~~g~i~~L~~~l~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL-----~--~~~~~i  260 (384)
                      ++...... ..+.++.++..+..   +.+.+.+..++.+|.+|.+.++........++++.+..++     .  ..+..+
T Consensus       136 ~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            65432221 13466777777743   3455677899999999998753333333488999999988     2  235778


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC-CCChhhHHHHHHHHHHhhcCChH-HHHHHHHcCchHHHHHHhc
Q 016714          261 LTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM-HPSATVLIPALRTVGNIVTGDDA-QTQFVIDNGVLPCLYQLLT  338 (384)
Q Consensus       261 ~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~-~~~~i~~~g~l~~L~~ll~  338 (384)
                      +.+++.|++-|+..+ +....+.+.++++.|+.+++ ....++..-++.++.|++...+. ....++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLSF~~-~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSFEP-EIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcCH-HHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            999999999998664 45567788899999999995 45789999999999999987654 6777888888888877776


Q ss_pred             cCC-chhHHHHHHH
Q 016714          339 QNH-KKSIKKEACW  351 (384)
Q Consensus       339 ~~~-~~~v~~~a~~  351 (384)
                      ... |+++....-+
T Consensus       294 rk~~Dedl~edl~~  307 (312)
T PF03224_consen  294 RKWSDEDLTEDLEF  307 (312)
T ss_dssp             S--SSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHH
Confidence            543 6677665444

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PTZ00429 beta-adaptin; Provisional

Probab=99.05  E-value=3.6e-07  Score=90.97  Aligned_cols=216  Identities=14%  Similarity=0.095  Sum_probs=109.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      .+.+++.+.+++.+++.-..-.+.++....  +....+    +++.|.+=+.+++ |.+|-.|++.+++|-.  ++... 
T Consensus        70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~--pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e-  139 (746)
T PTZ00429         70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQ--PEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE-  139 (746)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcccC--hHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH-
Confidence            455555555555555555555554443221  111111    2555555555555 6666666666665533  12111 


Q ss_pred             HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC
Q 016714          156 VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP  235 (384)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~  235 (384)
                          -.++.+.+.+.+.++-||..|+.++.++...++   +.+.+.|.++.|.++| .+.++.++.+|+.+|..++...+
T Consensus       140 ----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~  211 (746)
T PTZ00429        140 ----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGS  211 (746)
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCc
Confidence                123445555556666666666666666654433   4444455556666655 55566666666666666655432


Q ss_pred             CCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714          236 PTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT  315 (384)
Q Consensus       236 ~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (384)
                       .......+.+..|...|...++..+..++.+|....-.+....     ..++..+...|++.++.|.-.|++++.++..
T Consensus       212 -~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~  285 (746)
T PTZ00429        212 -EKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLAS  285 (746)
T ss_pred             -hhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence             2333334444445555555556666666555544322222211     2345556666666666666666666666554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.05  E-value=2.3e-08  Score=98.24  Aligned_cols=273  Identities=18%  Similarity=0.218  Sum_probs=209.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh
Q 016714           89 ALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL  168 (384)
Q Consensus        89 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l  168 (384)
                      ..|+.|-...-..-+.++.|+-+       +|.+++.|-+   ..-+..|+..|+....-.+-.....+.-|++|+.+++
T Consensus       451 teQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKL  520 (1387)
T KOG1517|consen  451 TEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKL  520 (1387)
T ss_pred             HHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence            56777777766666666666654       6666666654   4568889999998877778888888889999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc--hhHHHHHHHHHHhhhhcCCCCCChhhh-hch
Q 016714          169 LSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS--KLSMLRNATWTLSNFCRGKPPTPFEQV-KPA  245 (384)
Q Consensus       169 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~  245 (384)
                      |+++-.+++...+++...|-.-++.++..+++.++-..++..|..++  +++-+.-++++|+.++++.+..+.... .++
T Consensus       521 LQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~l  600 (1387)
T KOG1517|consen  521 LQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNL  600 (1387)
T ss_pred             hccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccH
Confidence            99999999999999999887766778888888888777888775422  457778899999999998654444444 566


Q ss_pred             HHHHHHhhccC-CHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC----ChHH
Q 016714          246 LPILQRLIHLN-DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG----DDAQ  320 (384)
Q Consensus       246 ~~~L~~lL~~~-~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~----~~~~  320 (384)
                      +......|.++ .+-++..+|-||+.|=...++..-.=...++.+.|..+|.++-++|+..|+.+||.+..+    .+++
T Consensus       601 i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~  680 (1387)
T KOG1517|consen  601 IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQ  680 (1387)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchh
Confidence            77777777774 577899999999999876554433335668899999999999999999999999999875    3333


Q ss_pred             HHHH------------HHcCc---hHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          321 TQFV------------IDNGV---LPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       321 ~~~i------------~~~g~---l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      +..+            ++..+   +..++.+++.+ .+-++++.+-+|+.++.|...++..+.-+..
T Consensus       681 ~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~  746 (1387)
T KOG1517|consen  681 TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYL  746 (1387)
T ss_pred             hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhc
Confidence            3322            12111   23577778888 8999999999999999999888777665444

>PTZ00429 beta-adaptin; Provisional

Probab=99.04  E-value=3.9e-07  Score=90.73  Aligned_cols=182  Identities=14%  Similarity=0.112  Sum_probs=132.0

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      -.+..+.+.+.+.|+.++-.|++.+..+-.    +.   +++ -+++.+.+.|.+.+ |-++..|+.|+.++...+++  
T Consensus       105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~----~~---i~e-~l~~~lkk~L~D~~-pYVRKtAalai~Kly~~~pe--  173 (746)
T PTZ00429        105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRV----SS---VLE-YTLEPLRRAVADPD-PYVRKTAAMGLGKLFHDDMQ--  173 (746)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc----HH---HHH-HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCcc--
Confidence            356777788888888888888888775522    22   222 14667788888888 99999999999999775553  


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                       .+.+.|.++.|..+|.+.++.++..|+.+|..+...++  ...-...+.+..|+..+ ..-++-.+..++.+|   +..
T Consensus       174 -lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~--~~l~l~~~~~~~Ll~~L-~e~~EW~Qi~IL~lL---~~y  246 (746)
T PTZ00429        174 -LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS--EKIESSNEWVNRLVYHL-PECNEWGQLYILELL---AAQ  246 (746)
T ss_pred             -cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc--hhhHHHHHHHHHHHHHh-hcCChHHHHHHHHHH---Hhc
Confidence             44567889999999999999999999999999987655  24334444444455555 445665555555555   444


Q ss_pred             CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 016714          234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG  274 (384)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~  274 (384)
                      .|... .....++..+...|++.++.|.-.|+.++.++...
T Consensus       247 ~P~~~-~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~  286 (746)
T PTZ00429        247 RPSDK-ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASR  286 (746)
T ss_pred             CCCCc-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence            44332 33467888888999999999999999999998755

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=2.1e-07  Score=89.29  Aligned_cols=293  Identities=20%  Similarity=0.205  Sum_probs=220.4

Q ss_pred             cCHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CChHHHHHHHHHHHHHhcCCc-
Q 016714           74 ESIPSMVQGVWSED-PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRH-DMPQLQFEAAWALTNVASGTS-  150 (384)
Q Consensus        74 ~~l~~lv~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~nl~~~~~-  150 (384)
                      +.|+.|+..+.++. .+.+..|++.|..+..    ..+..+. .-+++.|++.|..+ .++++...++..+.++....+ 
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr----kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH----HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            46889998887665 7889999999987642    3344444 44599999999753 248999999999999877542 


Q ss_pred             -----hh----------HHHHH-hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCC-CCchhhHHHhc-CChHHHHHHhc
Q 016714          151 -----EH----------TRVVI-EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGD-SPSCRDLVLSS-GALMPLLAQLN  212 (384)
Q Consensus       151 -----~~----------~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~i~~~-g~i~~L~~~l~  212 (384)
                           +.          .+.++ ..+.|..|+..+...+-.||..++..|.++... ++..++.++.. -+|..|+.+| 
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL-  175 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL-  175 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence                 11          12233 357788899999999999999999999998754 44577766654 4688899999 


Q ss_pred             ccchhHHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhccC---C-HhHHHHHHHHHHHhccCChHHHHHHHHcCC
Q 016714          213 EHSKLSMLRNATWTLSNFCRGKPPTPFEQV-KPALPILQRLIHLN---D-EEVLTDACWALSYLSDGPNDKIQAVIEAGV  287 (384)
Q Consensus       213 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~~~L~~lL~~~---~-~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~  287 (384)
                      .+..+.++-.++..|..|+++.+.....+. .+++..|..++...   | .-|..+|+..+.+|...+..+...+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            666777888999999999998766555444 88889898888643   3 368899999999999998888889999999


Q ss_pred             hHHHHHhcCC---CCh--------hh--HHHHHHHHHHhhcC-Ch----HHH-HHHHHcCchHHHHHHhccCC-chhHHH
Q 016714          288 CPRLVELLMH---PSA--------TV--LIPALRTVGNIVTG-DD----AQT-QFVIDNGVLPCLYQLLTQNH-KKSIKK  347 (384)
Q Consensus       288 ~~~L~~lL~~---~~~--------~v--~~~a~~~l~nl~~~-~~----~~~-~~i~~~g~l~~L~~ll~~~~-~~~v~~  347 (384)
                      +|+|.++|..   .+.        .+  ...++.++..++.- +.    .+. ..+...+++..|..++-++. ..+|+.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            9999988842   221        11  23456666666532 21    222 35667899999999998873 678999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          348 EACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       348 ~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      ++.-+++++..|+......+.+..+
T Consensus       336 esiitvAevVRgn~~nQ~~F~~v~~  360 (970)
T KOG0946|consen  336 ESIITVAEVVRGNARNQDEFADVTA  360 (970)
T ss_pred             HHHHHHHHHHHhchHHHHHHhhccC
Confidence            9999999999998887777766554

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.01  E-value=2.3e-08  Score=94.02  Aligned_cols=283  Identities=12%  Similarity=0.096  Sum_probs=182.6

Q ss_pred             CCCHHHHHHHHHHHH---HHhcCCCCCcHHH----HHHcCCHH--HHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH--
Q 016714           85 SEDPALQLEATTQFR---KLLSIERSPPIDE----VIKAGVVP--RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT--  153 (384)
Q Consensus        85 s~~~~~~~~a~~~l~---~l~s~~~~~~~~~----~~~~g~i~--~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~--  153 (384)
                      ......+..|+.+++   +++..+ +.....    ..+.|+.+  .+-.++++++ +..+..++.|+.++...+...-  
T Consensus       192 ~~s~~~RlaaL~~~sr~~~iL~Nn-~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~-~s~~l~sl~cl~~~~~~s~~~d~l  269 (678)
T KOG1293|consen  192 YLSSKLRLAALLCLSRGDRILRNN-PLGSMFLLGLLKDKGVNIRCVVTRLLKDPD-FSERLRSLECLVPYLRKSFNYDPL  269 (678)
T ss_pred             hhhHHHHHHHHHHhhccceeeecC-chhHHHHHHHHhccccchhhhhhhhhhCCC-ccHHHHHHHHHHHHHhcccccccc
Confidence            335678888999998   776643 222222    33557666  4666777877 7888999999998877541100  


Q ss_pred             -----------HHHHh--------cCCh-----HHHHH-----hhc---C-----CCHHHHHHHHHHHHhhhCCCCchhh
Q 016714          154 -----------RVVIE--------HGAV-----PMFVQ-----LLS---S-----GSDDVREQAVWALGNVAGDSPSCRD  196 (384)
Q Consensus       154 -----------~~i~~--------~g~i-----~~L~~-----lL~---~-----~~~~v~~~a~~~L~nl~~~~~~~~~  196 (384)
                                 ..++.        .+++     ...+-     +.+   .     ...+.....+.+-+.++...+.++.
T Consensus       270 ~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~  349 (678)
T KOG1293|consen  270 PWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRL  349 (678)
T ss_pred             ccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhH
Confidence                       00000        0110     00000     111   0     0112222233444444455555544


Q ss_pred             HHHhcCChHH---------------------HHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh-hhhhchHHHHHHhhc
Q 016714          197 LVLSSGALMP---------------------LLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF-EQVKPALPILQRLIH  254 (384)
Q Consensus       197 ~i~~~g~i~~---------------------L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~~~L~~lL~  254 (384)
                      .++....++.                     ....+....|..+..+++-++.++++.-....- .....+...|+++++
T Consensus       350 i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~  429 (678)
T KOG1293|consen  350 ILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM  429 (678)
T ss_pred             HHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh
Confidence            4433222111                     111111234666777777777777764211000 112456677888888


Q ss_pred             cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCch-HHH
Q 016714          255 LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVL-PCL  333 (384)
Q Consensus       255 ~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l-~~L  333 (384)
                      .++..+...++++|.|+.-.-......++..|+++.+..++.+.++.++..++|+|.++..+.++.........+- ..+
T Consensus       430 dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i  509 (678)
T KOG1293|consen  430 DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLI  509 (678)
T ss_pred             CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHH
Confidence            8999999999999999997766667789999999999999999999999999999999999988776655554443 345


Q ss_pred             HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 016714          334 YQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSF  370 (384)
Q Consensus       334 ~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~  370 (384)
                      ..+.+++ +..|++.+.-.+.|++.+..+-++++++.
T Consensus       510 ~~l~nd~-d~~Vqeq~fqllRNl~c~~~~svdfll~~  545 (678)
T KOG1293|consen  510 LDLINDP-DWAVQEQCFQLLRNLTCNSRKSVDFLLEK  545 (678)
T ss_pred             HHHHhCC-CHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence            6666666 99999999999999999999999988865

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=4.3e-08  Score=89.10  Aligned_cols=271  Identities=18%  Similarity=0.129  Sum_probs=190.5

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 016714           87 DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFV  166 (384)
Q Consensus        87 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~  166 (384)
                      ..++...|+..|.+++..  ...-..+...+++..|++.|+.++ .++.......|..++-- .+++..+.+.|++..|+
T Consensus       276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~  351 (791)
T KOG1222|consen  276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLL  351 (791)
T ss_pred             HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHH
Confidence            344555677777777642  223334778899999999999988 78888888899888774 78888999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchH
Q 016714          167 QLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPAL  246 (384)
Q Consensus       167 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~  246 (384)
                      +++...+++++..++..|.|++-++. .|...+..|.+|.|..++.++....   .|+..+..++-.+..........++
T Consensus       352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~~---iA~~~lYh~S~dD~~K~MfayTdci  427 (791)
T KOG1222|consen  352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKHG---IALNMLYHLSCDDDAKAMFAYTDCI  427 (791)
T ss_pred             HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccch---hhhhhhhhhccCcHHHHHHHHHHHH
Confidence            99999999999999999999998876 6778889999999999995554443   3555666677665545555557888


Q ss_pred             HHHHHhh-ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 016714          247 PILQRLI-HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL-MHPSATVLIPALRTVGNIVTGDDAQTQFV  324 (384)
Q Consensus       247 ~~L~~lL-~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~i  324 (384)
                      +.+.+.+ ...+.++-...+..--|+|... .+.+.+++-..+..|++.- ++.++    .....+.||+.+.......+
T Consensus       428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~F  502 (791)
T KOG1222|consen  428 KLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMF  502 (791)
T ss_pred             HHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHH
Confidence            8877665 4445555444444344555432 2344556655666666553 44443    24556778887665444455


Q ss_pred             HHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          325 IDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       325 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      ++  .+..|..++...+++..--++..++.|++...-+--+.+-+.++
T Consensus       503 id--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~L  548 (791)
T KOG1222|consen  503 ID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENL  548 (791)
T ss_pred             HH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccc
Confidence            54  45667777776657778889999999999754444344444444

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.99  E-value=9.3e-09  Score=93.36  Aligned_cols=208  Identities=19%  Similarity=0.239  Sum_probs=148.2

Q ss_pred             hHHHHHhhc--CCCHHHHHHHHHHHHhhhCCCCchhhHHHhc------CChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          162 VPMFVQLLS--SGSDDVREQAVWALGNVAGDSPSCRDLVLSS------GALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       162 i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~------g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      ...++.+|+  +.++++....+..+..+..+.+...+.+...      ....++++++ ..+|..+...++..|+.+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence            444455554  3689999999999999999888766666652      2577888866 667888999999999999988


Q ss_pred             CCCCChhhhhchHHHHHHhhc----cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc-----CC--CChhh
Q 016714          234 KPPTPFEQVKPALPILQRLIH----LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL-----MH--PSATV  302 (384)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~----~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL-----~~--~~~~v  302 (384)
                      .+........+.++.+...+.    +++.+++.-++.++..+.... .....+.+.++++.+..+|     .+  .+..+
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            765555433455565555554    456778899999999998654 4556788899999999999     22  23567


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCH-HHHHHHHhCCc
Q 016714          303 LIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNR-AQIQVHDSFHL  372 (384)
Q Consensus       303 ~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~-~~i~~l~~~~~  372 (384)
                      +-.++.++.-++. +++....+.+.++++.|.+++....++++.+-+.+++.|+....+ ..+..|+.+|+
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~  284 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGL  284 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-H
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccH
Confidence            7789999998876 667777788889999999999987789999999999999998443 37888888887

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.99  E-value=2.2e-07  Score=86.01  Aligned_cols=303  Identities=12%  Similarity=0.070  Sum_probs=201.5

Q ss_pred             CHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc-----CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcC
Q 016714           75 SIPSMVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKA-----GVVPRFVEFLGRHDMPQLQFEAAWALTNVASG  148 (384)
Q Consensus        75 ~l~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-----g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~  148 (384)
                      ....++..+.. +..++....+..+..++... +.....+.+.     .....++.+|..++ .-++..|+.+|+.+.+.
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence            34566666663 44667777788888888753 4444555553     56778888998877 78999999999998775


Q ss_pred             CchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc-hhHHHHHHHHH
Q 016714          149 TSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS-KLSMLRNATWT  226 (384)
Q Consensus       149 ~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~-~~~~~~~a~~~  226 (384)
                      ...........-.++.|...+.+ .+...+..|+.+|..+....+ +|..+.+.+++++|+.+|.... +.+++..++.+
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            33321111111133455555654 347788888999999987766 7888888999999999996555 67889999999


Q ss_pred             HhhhhcCCCCCChhhhhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCC------hHHHHHHHHcCChHHHHHhcCC--
Q 016714          227 LSNFCRGKPPTPFEQVKPALPILQRLIHLN-DEEVLTDACWALSYLSDGP------NDKIQAVIEAGVCPRLVELLMH--  297 (384)
Q Consensus       227 L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~i~~~a~~~l~~l~~~~------~~~~~~~~~~g~~~~L~~lL~~--  297 (384)
                      ++-|+...+........+++|.++.++... -+.+..-++.++.|+...+      ......++..|+++.+..+...  
T Consensus       211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~  290 (429)
T cd00256         211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY  290 (429)
T ss_pred             HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence            999988754222333378999999999765 4668888899999999853      2234456777776655544432  


Q ss_pred             CChhhHHHHHHHHHHh--------h--------------cCCh---------HHHHHHHHc--CchHHHHHHhccCCchh
Q 016714          298 PSATVLIPALRTVGNI--------V--------------TGDD---------AQTQFVIDN--GVLPCLYQLLTQNHKKS  344 (384)
Q Consensus       298 ~~~~v~~~a~~~l~nl--------~--------------~~~~---------~~~~~i~~~--g~l~~L~~ll~~~~~~~  344 (384)
                      .|+++.. .+..+...        +              ..+|         +....+.+.  .++..|..+|..+.++.
T Consensus       291 ~DedL~e-dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~  369 (429)
T cd00256         291 DDEDLTD-DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI  369 (429)
T ss_pred             CcHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence            2333321 11111111        1              1122         222333333  45788999996555788


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhCCc------cccCCCccc
Q 016714          345 IKKEACWTISNITAGNRAQIQVHDSFHL------FVLHEDFSL  381 (384)
Q Consensus       345 v~~~a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~~~  381 (384)
                      +-.-||.=++.++...|.-...+-+.|.      +|.++|.+|
T Consensus       370 ~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~V  412 (429)
T cd00256         370 ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNV  412 (429)
T ss_pred             eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHH
Confidence            8888999999999877766666667777      567666554

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.95  E-value=5.9e-08  Score=87.89  Aligned_cols=266  Identities=13%  Similarity=0.111  Sum_probs=179.7

Q ss_pred             cCHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           74 ESIPSMVQGVWSEDPA--LQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~--~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      +.+..+++++++.+.+  ++.++.+.|..+++   .++.+.+...| +..++.+-+....++++...+.+|.++-.++.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~---aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILV---AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh---hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            5789999999988854  58999999999987   56777777776 555555544433389999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCC-CCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714          152 HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGD-SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF  230 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L  230 (384)
                      ....++..|+++.++...+..++.+..+|+.+|+|++-+ ....+..+++..+-+-|..+- .+.|.-++-++|-+.+.+
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999854 344666677766666666655 555777788999999999


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714          231 CRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV  310 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l  310 (384)
                      +..+.........+.+...-.++.+-|+.....   --...+.+        .....++.|+.+|+++.-+.+.-++.-+
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG--------~~~d~LqRLvPlLdS~R~EAq~i~AF~l  403 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQG--------RGPDDLQRLVPLLDSNRLEAQCIGAFYL  403 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhcc--------CChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence            987643333333454444444555545432111   00001111        1123578899999876655554444443


Q ss_pred             HHhhcCC--hHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHH
Q 016714          311 GNIVTGD--DAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI  356 (384)
Q Consensus       311 ~nl~~~~--~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl  356 (384)
                      +-=+.-.  ...++.+-+-|.++.|..+.+++ +..-.+-|.-+|.-|
T Consensus       404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi  450 (832)
T KOG3678|consen  404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI  450 (832)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence            3322211  12233444669999999999877 544444444444333

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.90  E-value=8.9e-08  Score=94.24  Aligned_cols=254  Identities=17%  Similarity=0.197  Sum_probs=195.4

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .+|.+++-|-|.-  -++.|+..|..++... ...+..-+.-|++|.++++|+++. .+++..-+++.+.|.+-++.+..
T Consensus       473 QLPiVLQVLLSQv--HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~  548 (1387)
T KOG1517|consen  473 QLPIVLQVLLSQV--HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQA  548 (1387)
T ss_pred             hcchHHHHHHHHH--HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHH
Confidence            3455555444322  4567888888888775 666777788899999999999988 89999999999998888899999


Q ss_pred             HHHhcCChHHHHHhhcC---CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714          155 VVIEHGAVPMFVQLLSS---GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~  231 (384)
                      .+++.++-.+++..|..   -+++-+..|+++|+.|+.+.+..+..+++.+.+...+..|.....+-++.-++-+|..|-
T Consensus       549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW  628 (1387)
T KOG1517|consen  549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW  628 (1387)
T ss_pred             HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence            99998888888888876   246889999999999999888888889999999989999955445667778888888888


Q ss_pred             cCCCCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccC----ChHHHHHH------------HHcCCh---HHH
Q 016714          232 RGKPPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDG----PNDKIQAV------------IEAGVC---PRL  291 (384)
Q Consensus       232 ~~~~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~----~~~~~~~~------------~~~g~~---~~L  291 (384)
                      .+.+.....-. ..+.+.|..+|..+-++|+..|+.||+.+...    .++....+            ++.-+.   ..+
T Consensus       629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l  708 (1387)
T KOG1517|consen  629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL  708 (1387)
T ss_pred             hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence            77644444333 67888999999999999999999999998875    23332222            222222   366


Q ss_pred             HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHH
Q 016714          292 VELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPC  332 (384)
Q Consensus       292 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~  332 (384)
                      +.+++..++-++....-++..++.+...+...+.-...++.
T Consensus       709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~  749 (1387)
T KOG1517|consen  709 LALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPE  749 (1387)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccc
Confidence            77778889999999999999999887766655544434433

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=5.6e-08  Score=91.46  Aligned_cols=270  Identities=15%  Similarity=0.174  Sum_probs=177.0

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .+|++++..+++.+.++-.|+.++..++-.. +.....- -...+..+..+-.+.+ +++|...+.+|.-+..--++...
T Consensus       175 mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-~qal~~~-iD~Fle~lFalanD~~-~eVRk~vC~alv~Llevr~dkl~  251 (885)
T KOG2023|consen  175 MIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-TQALYVH-IDKFLEILFALANDED-PEVRKNVCRALVFLLEVRPDKLV  251 (885)
T ss_pred             hHHHHHHHHhCCChhHHHHHHhhhhheeecC-cHHHHHH-HHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHhcHHhcc
Confidence            4899999999999999999999988776432 2221111 1234566666666666 99999999999998764333222


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhc--CChHHHHHHhcccch-h--------------
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSS--GALMPLLAQLNEHSK-L--------------  217 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~--g~i~~L~~~l~~~~~-~--------------  217 (384)
                      .-. .+++++.+...++.++++.-.|+.....+|..+ -+++.+...  ..+|.|++-+.++.+ .              
T Consensus       252 phl-~~IveyML~~tqd~dE~VALEACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpD  329 (885)
T KOG2023|consen  252 PHL-DNIVEYMLQRTQDVDENVALEACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPD  329 (885)
T ss_pred             cch-HHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCc
Confidence            222 367788888888889999999999999998765 455555432  245555444322111 1              


Q ss_pred             ----------------------------------------HHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCC
Q 016714          218 ----------------------------------------SMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLND  257 (384)
Q Consensus       218 ----------------------------------------~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~  257 (384)
                                                              .+++-.+.+|-.|+.-   ...+....++|.|-..|.+++
T Consensus       330 reeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv---f~~elL~~l~PlLk~~L~~~~  406 (885)
T KOG2023|consen  330 REEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV---FGDELLPILLPLLKEHLSSEE  406 (885)
T ss_pred             hhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh---hHHHHHHHHHHHHHHHcCcch
Confidence                                                    1122111122222111   011233445666777778888


Q ss_pred             HhHHHHHHHHHHHhccCChHHHHHHHHc--CChHHHHHhcCCCChhhHHHHHHHHHHhhcCC--hHHHHHHHHcCchHHH
Q 016714          258 EEVLTDACWALSYLSDGPNDKIQAVIEA--GVCPRLVELLMHPSATVLIPALRTVGNIVTGD--DAQTQFVIDNGVLPCL  333 (384)
Q Consensus       258 ~~i~~~a~~~l~~l~~~~~~~~~~~~~~--g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~--~~~~~~i~~~g~l~~L  333 (384)
                      ..+++.+..+++.++.+...   -++.+  .++|.|+.+|.+..+-|+.-.||+|+..+..-  ++ .+..+. .++.-|
T Consensus       407 W~vrEagvLAlGAIAEGcM~---g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~l  481 (885)
T KOG2023|consen  407 WKVREAGVLALGAIAEGCMQ---GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGL  481 (885)
T ss_pred             hhhhhhhHHHHHHHHHHHhh---hcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHH
Confidence            99999999999999987543   22322  47899999999999999999999999987531  12 222222 234445


Q ss_pred             HHHhccCCchhHHHHHHHHHHHHhc
Q 016714          334 YQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       334 ~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ++-+-++ +..|++.||.++.-+-.
T Consensus       482 l~~llD~-NK~VQEAAcsAfAtleE  505 (885)
T KOG2023|consen  482 LRRLLDS-NKKVQEAACSAFATLEE  505 (885)
T ss_pred             HHHHhcc-cHHHHHHHHHHHHHHHH
Confidence            5555566 78999999999998875

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=6.2e-07  Score=89.79  Aligned_cols=274  Identities=18%  Similarity=0.200  Sum_probs=182.7

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCC--CCcHHHHHHcCCHHHHHHhh----cCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           79 MVQGVWSEDPALQLEATTQFRKLLSIER--SPPIDEVIKAGVVPRFVEFL----GRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        79 lv~~l~s~~~~~~~~a~~~l~~l~s~~~--~~~~~~~~~~g~i~~Lv~lL----~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      +.+.+.+.+..++..|++++..+.....  ...++.+  ...+|.++..+    ..++ .+.-..+..+|..++...+..
T Consensus       164 f~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~--~~llP~~l~vl~~~i~~~d-~~~a~~~l~~l~El~e~~pk~  240 (1075)
T KOG2171|consen  164 FSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKF--RDLLPSLLNVLQEVIQDGD-DDAAKSALEALIELLESEPKL  240 (1075)
T ss_pred             HHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHH--HHHhHHHHHHhHhhhhccc-hHHHHHHHHHHHHHHhhchHH
Confidence            3344455555599999999987765431  1112222  23455555544    4455 666778888888888876666


Q ss_pred             HHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHH-------------------------------
Q 016714          153 TRVVIEHGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVL-------------------------------  199 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~-------------------------------  199 (384)
                      ....+. .++..-+.+..+  -+..+|..|+.+|..++..-|.......                               
T Consensus       241 l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~de  319 (1075)
T KOG2171|consen  241 LRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDE  319 (1075)
T ss_pred             HHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccc
Confidence            655554 345555555554  3466777777777666543221110000                               


Q ss_pred             -------------------hcC---ChHHHHHHh---cccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc
Q 016714          200 -------------------SSG---ALMPLLAQL---NEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIH  254 (384)
Q Consensus       200 -------------------~~g---~i~~L~~~l---~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~  254 (384)
                                         ..|   +.+++...+   .++.+..-+.+++.+|+.++.+.+.........+++.++..|.
T Consensus       320 d~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~  399 (1075)
T KOG2171|consen  320 DDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLN  399 (1075)
T ss_pred             ccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC
Confidence                               111   122332222   2455666778899999999988755555556788899999999


Q ss_pred             cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC-ChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCchH-
Q 016714          255 LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP-SATVLIPALRTVGNIVTGDD-AQTQFVIDNGVLP-  331 (384)
Q Consensus       255 ~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~g~l~-  331 (384)
                      .+++.|+..||.+++.++..-...++.-...-+++.|+..+.+. ++.++..|+.++-|+....+ +.....++ +++. 
T Consensus       400 DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~  478 (1075)
T KOG2171|consen  400 DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEK  478 (1075)
T ss_pred             CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHH
Confidence            99999999999999999987655566666677888999999765 67999999999999987654 44444443 4666 


Q ss_pred             HHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          332 CLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       332 ~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .+..+++++ .+.+++.++-+|+.++.
T Consensus       479 ~l~~L~~~~-~~~v~e~vvtaIasvA~  504 (1075)
T KOG2171|consen  479 KLLLLLQSS-KPYVQEQAVTAIASVAD  504 (1075)
T ss_pred             HHHHHhcCC-chhHHHHHHHHHHHHHH
Confidence            455555666 89999999999999996

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=4.8e-07  Score=86.64  Aligned_cols=278  Identities=14%  Similarity=0.159  Sum_probs=186.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      +|-+-+.++++|..-+..|+.++..++.+. ++....-+-.+++|.++.++.++. --++..++|+|+.++...++....
T Consensus       366 l~Fiee~i~~pdwr~reaavmAFGSIl~gp-~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~l~e~~~n  443 (859)
T KOG1241|consen  366 LPFIEENIQNPDWRNREAAVMAFGSILEGP-EPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADFLPEAIIN  443 (859)
T ss_pred             HHHHHHhcCCcchhhhhHHHHHHHhhhcCC-chhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhhchhhccc
Confidence            455555778899999999999999998764 555555667788999999999766 788899999999999987754433


Q ss_pred             HHh-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch-----hhHHHhcCChHHHHHHhcc------cchhHHHHHH
Q 016714          156 VIE-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC-----RDLVLSSGALMPLLAQLNE------HSKLSMLRNA  223 (384)
Q Consensus       156 i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~i~~~g~i~~L~~~l~~------~~~~~~~~~a  223 (384)
                      ... .+.++.++.-|. +.|.+..+++|++.+++...++.     ...... ...+.++.-|..      ..+..++..+
T Consensus       444 ~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AA  521 (859)
T KOG1241|consen  444 QELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAA  521 (859)
T ss_pred             HhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHH
Confidence            322 344555555554 46899999999999998321100     000111 123334433321      1345678888


Q ss_pred             HHHHhhhhcCCCCCChhhhhchHHHHHH---------hhccCC----HhHHHHHHHHHHHhccCChHHHHHHHHcCChHH
Q 016714          224 TWTLSNFCRGKPPTPFEQVKPALPILQR---------LIHLND----EEVLTDACWALSYLSDGPNDKIQAVIEAGVCPR  290 (384)
Q Consensus       224 ~~~L~~L~~~~~~~~~~~~~~~~~~L~~---------lL~~~~----~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~  290 (384)
                      ..+|..+....+......+.+..+.+..         .+...|    .+++...|.+|..+...-...+.. ....++..
T Consensus       522 YeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~-~~d~iM~l  600 (859)
T KOG1241|consen  522 YEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIRE-VSDQIMGL  600 (859)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchh-HHHHHHHH
Confidence            8899999998876666666665555444         222233    356677777777766543323322 22345777


Q ss_pred             HHHhcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714          291 LVELLMH-PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG  359 (384)
Q Consensus       291 L~~lL~~-~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  359 (384)
                      +++++.+ .+..+.+.|+.+++.++..-..+..... ..+.|+|..-|++..+..+...|+..++.++..
T Consensus       601 flri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ra  669 (859)
T KOG1241|consen  601 FLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARA  669 (859)
T ss_pred             HHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            8888877 4567888899999998865444433333 247888888886665888999999999999863

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=4.2e-06  Score=72.31  Aligned_cols=271  Identities=15%  Similarity=0.214  Sum_probs=174.6

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVI--KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      .+..++..+++.+|.++..|+..+..+...    +.+.+.  +.-.++.+.+++...+ +  ...|+.+|.|++.. ...
T Consensus         4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~-~~l   75 (353)
T KOG2973|consen    4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQK-EEL   75 (353)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhh-HHH
Confidence            356889999999999999999888877543    222222  3457888999998876 4  77899999999985 777


Q ss_pred             HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhc-----CChHHHHHHhcccc-h-hHHHHHHHH
Q 016714          153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSS-----GALMPLLAQLNEHS-K-LSMLRNATW  225 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~-----g~i~~L~~~l~~~~-~-~~~~~~a~~  225 (384)
                      ++.+++. .+..++..+.++-..+....+.+|.|++.+...+.......     .++..++..+.+.+ + ..-..+.+.
T Consensus        76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~  154 (353)
T KOG2973|consen   76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP  154 (353)
T ss_pred             HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence            7777776 77778888877766778888999999998877665544322     23444444442322 2 123456777


Q ss_pred             HHhhhhcCCCCCChhhhhchHH--HHHHhhccCCHhH-HHHHHHHHHHhccCChHHHHHHH-HcCChHHHH---------
Q 016714          226 TLSNFCRGKPPTPFEQVKPALP--ILQRLIHLNDEEV-LTDACWALSYLSDGPNDKIQAVI-EAGVCPRLV---------  292 (384)
Q Consensus       226 ~L~~L~~~~~~~~~~~~~~~~~--~L~~lL~~~~~~i-~~~a~~~l~~l~~~~~~~~~~~~-~~g~~~~L~---------  292 (384)
                      .++|+++.............+|  .+..+-. .+..+ +...+.+|.|+|......-..+- +..+++.++         
T Consensus       155 vf~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  155 VFANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCcccc
Confidence            8888888643222222222332  3333333 44444 45577788887765443322221 112233222         


Q ss_pred             ------------HhcC-----CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHH
Q 016714          293 ------------ELLM-----HPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN  355 (384)
Q Consensus       293 ------------~lL~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  355 (384)
                                  ++|.     .+++.++..-+.+|--+|+ +...++.+.+.|+.+.+..+=...+++++++ ||.-+.+
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~-ace~vvq  311 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIRE-ACEQVVQ  311 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHH-HHHHHHH
Confidence                        3332     2467889999999998887 5667777888899888887777764666655 4554444


Q ss_pred             Hh
Q 016714          356 IT  357 (384)
Q Consensus       356 l~  357 (384)
                      +-
T Consensus       312 ~L  313 (353)
T KOG2973|consen  312 ML  313 (353)
T ss_pred             HH
Confidence            44

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.74  E-value=9.6e-07  Score=79.37  Aligned_cols=234  Identities=16%  Similarity=0.175  Sum_probs=169.8

Q ss_pred             HHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhh-cCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           78 SMVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFL-GRHDMPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        78 ~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      .+...+++ .+++....++++|.-++..  ++.+..++..+++..++..+ ++.-.-++|++.+.|+.-++.. +...+.
T Consensus       160 ~l~~~l~~~~~~~~~~~~~rcLQ~ll~~--~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~  236 (442)
T KOG2759|consen  160 FLKEQLQSSTNNDYIQFAARCLQTLLRV--DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEK  236 (442)
T ss_pred             HHHHHHhccCCCchHHHHHHHHHHHhcC--cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHH
Confidence            34444555 5677888899999988764  56677788888899999988 4433379999999999999985 666677


Q ss_pred             HHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCC------chhhHHHhcCChHHHHHHhccc--chhHHHHHHHHH
Q 016714          156 VIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSP------SCRDLVLSSGALMPLLAQLNEH--SKLSMLRNATWT  226 (384)
Q Consensus       156 i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~------~~~~~i~~~g~i~~L~~~l~~~--~~~~~~~~a~~~  226 (384)
                      +...+.|+.|..++++ ..++|...++.++.|+....+      ......+.. .+++-++.|...  +|+++....-..
T Consensus       237 ~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~-~v~k~l~~L~~rkysDEDL~~di~~L  315 (442)
T KOG2759|consen  237 LKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC-KVLKTLQSLEERKYSDEDLVDDIEFL  315 (442)
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc-CchHHHHHHHhcCCCcHHHHHHHHHH
Confidence            7778999999999986 567899999999999997664      222333333 455556666332  355444333222


Q ss_pred             Hh----------------------hhhcCCCCCChh------------hhhchHHHHHHhhccC-CHhHHHHHHHHHHHh
Q 016714          227 LS----------------------NFCRGKPPTPFE------------QVKPALPILQRLIHLN-DEEVLTDACWALSYL  271 (384)
Q Consensus       227 L~----------------------~L~~~~~~~~~~------------~~~~~~~~L~~lL~~~-~~~i~~~a~~~l~~l  271 (384)
                      -.                      .|+.. |.....            ....++..|+++|+++ ||.+..-||.=|+..
T Consensus       316 ~e~L~~svq~LsSFDeY~sEl~sG~L~WS-P~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~  394 (442)
T KOG2759|consen  316 TEKLKNSVQDLSSFDEYKSELRSGRLEWS-PVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEY  394 (442)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhCCcCCC-ccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHH
Confidence            11                      12222 221111            1146788899999765 588899999999999


Q ss_pred             ccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714          272 SDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG  316 (384)
Q Consensus       272 ~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (384)
                      ..+.++....+.+.|+=+.++.++.++++.|+-+|+.++..+..+
T Consensus       395 Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  395 VRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             HHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            999888888888899999999999999999999999998877543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=8.1e-06  Score=78.74  Aligned_cols=288  Identities=18%  Similarity=0.266  Sum_probs=210.5

Q ss_pred             cCHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCC------CCc---------HHHHH-HcCCHHHHHHhhcCCCChHHH
Q 016714           74 ESIPSMVQGVWS--EDPALQLEATTQFRKLLSIER------SPP---------IDEVI-KAGVVPRFVEFLGRHDMPQLQ  135 (384)
Q Consensus        74 ~~l~~lv~~l~s--~~~~~~~~a~~~l~~l~s~~~------~~~---------~~~~~-~~g~i~~Lv~lL~~~~~~~~~  135 (384)
                      .+++.++..|+.  .|++..-.++..+..+++.+.      ++.         .+.++ ..+.|..++.++...| -.+|
T Consensus        61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~D-F~VR  139 (970)
T KOG0946|consen   61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFD-FHVR  139 (970)
T ss_pred             cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhc-hhhh
Confidence            467889998884  468888888999988887652      111         12233 4588999999999888 7999


Q ss_pred             HHHHHHHHHHhcC-CchhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc
Q 016714          136 FEAAWALTNVASG-TSEHTRVVIE-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE  213 (384)
Q Consensus       136 ~~a~~~L~nl~~~-~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~  213 (384)
                      ..+...|+++.+. ..+.++.+.. .-+|..++.+|.+..+.+|..++..|..+..+++.++..+.=.+++..|+.++..
T Consensus       140 ~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee  219 (970)
T KOG0946|consen  140 LYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE  219 (970)
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence            9999999997664 3455555554 4589999999999999999999999999999999999988888899999999964


Q ss_pred             cc--hh-HHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcc---CCHh----------HHHHHHHHHHHhccCCh
Q 016714          214 HS--KL-SMLRNATWTLSNFCRGK-PPTPFEQVKPALPILQRLIHL---NDEE----------VLTDACWALSYLSDGPN  276 (384)
Q Consensus       214 ~~--~~-~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~lL~~---~~~~----------i~~~a~~~l~~l~~~~~  276 (384)
                      .+  |- -+...++..|-||..+. .+..+-.-.+.+|.|.++|..   .|.+          -...++.++..+..-+.
T Consensus       220 EGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~N  299 (970)
T KOG0946|consen  220 EGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGN  299 (970)
T ss_pred             cCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCC
Confidence            43  33 37788999999999886 334444447899999988743   2311          23445555655554211


Q ss_pred             ------HHHHHHHHcCChHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHc---------CchH-HHHHHhc
Q 016714          277 ------DKIQAVIEAGVCPRLVELLMHP--SATVLIPALRTVGNIVTGDDAQTQFVIDN---------GVLP-CLYQLLT  338 (384)
Q Consensus       277 ------~~~~~~~~~g~~~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---------g~l~-~L~~ll~  338 (384)
                            .+...+.+.+++..|..++.++  ..+|+..++.++++++.++......+.+.         ..+- .++.+..
T Consensus       300 t~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~n  379 (970)
T KOG0946|consen  300 TSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFN  379 (970)
T ss_pred             cHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHh
Confidence                  2223567889999999999887  35788999999999999988776666542         1122 2333334


Q ss_pred             cCCchhHHHHHHHHHHHHhcCCHH
Q 016714          339 QNHKKSIKKEACWTISNITAGNRA  362 (384)
Q Consensus       339 ~~~~~~v~~~a~~~L~nl~~~~~~  362 (384)
                      +...+..|-.+.+++..+...+.+
T Consensus       380 e~q~~~lRcAv~ycf~s~l~dN~~  403 (970)
T KOG0946|consen  380 EKQPFSLRCAVLYCFRSYLYDNDD  403 (970)
T ss_pred             ccCCchHHHHHHHHHHHHHhcchh
Confidence            443678888888888888864433

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.56  E-value=1.7e-07  Score=57.08  Aligned_cols=41  Identities=29%  Similarity=0.596  Sum_probs=37.8

Q ss_pred             ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          317 DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       317 ~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ++++.+.+++.|++|.|+.+|.++ ++.++++|+|+|+||++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence            367788999999999999999988 99999999999999985

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.55  E-value=1.4e-07  Score=57.42  Aligned_cols=41  Identities=44%  Similarity=0.817  Sum_probs=38.4

Q ss_pred             CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhC
Q 016714          149 TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAG  189 (384)
Q Consensus       149 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~  189 (384)
                      +++++..+++.|++|.|+.+|.++++++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46889999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.53  E-value=3e-05  Score=71.51  Aligned_cols=274  Identities=17%  Similarity=0.179  Sum_probs=180.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD-MPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      +.+...+-+++.+++..|.+.+|.++..  ......+.+.++--.++.-|..++ +..-+++|+..+..+..-.. ..+ 
T Consensus        28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~-  103 (371)
T PF14664_consen   28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK-  103 (371)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence            4444455566699999999999988874  567888888887777777776543 35567889888887766311 121 


Q ss_pred             HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC
Q 016714          156 VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP  235 (384)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~  235 (384)
                      .+..|++..++.+..++++.++..|+.+|+.++-.+|   +.+..+|++..|++.+.+ ...++...+++++..+...+.
T Consensus       104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~  179 (371)
T PF14664_consen  104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR  179 (371)
T ss_pred             cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence            2345788999999999999999999999999998888   568899999999999955 444488888999988888743


Q ss_pred             CCChhhhhchHHHHHHhh-cc------CCH--hHHHHHHHHHHHhccCChHHHHHHHHc-CChHHHHHhcCCCChhhHHH
Q 016714          236 PTPFEQVKPALPILQRLI-HL------NDE--EVLTDACWALSYLSDGPNDKIQAVIEA-GVCPRLVELLMHPSATVLIP  305 (384)
Q Consensus       236 ~~~~~~~~~~~~~L~~lL-~~------~~~--~i~~~a~~~l~~l~~~~~~~~~~~~~~-g~~~~L~~lL~~~~~~v~~~  305 (384)
                      ...+.....-++.+..-+ ..      ++.  +....+..++..+...-+.....-.+. ..+..|+..|..+++.++..
T Consensus       180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence            222222111222222211 11      222  355556666666555433322111111 35666666666666666665


Q ss_pred             HHHHHHHhh-------------------cC-------------------------Ch----HH----HHHHHHcCchHHH
Q 016714          306 ALRTVGNIV-------------------TG-------------------------DD----AQ----TQFVIDNGVLPCL  333 (384)
Q Consensus       306 a~~~l~nl~-------------------~~-------------------------~~----~~----~~~i~~~g~l~~L  333 (384)
                      .+-++..+.                   .+                         ..    ..    ...++++|+++.|
T Consensus       260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L  339 (371)
T PF14664_consen  260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL  339 (371)
T ss_pred             HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence            555554432                   00                         00    00    1234588999999


Q ss_pred             HHHhccCCchhHHHHHHHHHHHHhc
Q 016714          334 YQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       334 ~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ..++...+++.+...|...|+.+..
T Consensus       340 ~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  340 VELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHH
Confidence            9999988678899999998887753

>TIGR02270 conserved hypothetical protein

Probab=98.52  E-value=3.7e-05  Score=71.78  Aligned_cols=219  Identities=20%  Similarity=0.094  Sum_probs=154.1

Q ss_pred             CHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           75 SIPSMVQGVW-SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        75 ~l~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      .++.++..+. .++.++...++..+.   ..+ .+        ..+..|+..|.+++ +.++..++.+|+.+-.      
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALL---AQE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHh---ccC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence            4566777774 455666555554443   221 11        13888999998887 8899999999986643      


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                           ..+.+.|+.+|.+.++.++..++.+++..-.            ...+.+...| .+.++.+...++.+|..+...
T Consensus       116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR  177 (410)
T ss_pred             -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence                 2567889999999999999988888777321            1345788888 688899999999999888764


Q ss_pred             CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHH------------------c----CChHHH
Q 016714          234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIE------------------A----GVCPRL  291 (384)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~------------------~----g~~~~L  291 (384)
                                ..+|.|...+.+.|+.++..++++++.+-.  +.....+..                  .    ..++.|
T Consensus       178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L  245 (410)
T TIGR02270       178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWL  245 (410)
T ss_pred             ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHH
Confidence                      456677888999999999999999877743  211111111                  1    234445


Q ss_pred             HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          292 VELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       292 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ..++.++.  ++..++.++|.+-.           ...++.|+..+...   .++..|.++++.|+.
T Consensus       246 ~~ll~d~~--vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~---~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       246 RELLQAAA--TRREALRAVGLVGD-----------VEAAPWCLEAMREP---PWARLAGEAFSLITG  296 (410)
T ss_pred             HHHhcChh--hHHHHHHHHHHcCC-----------cchHHHHHHHhcCc---HHHHHHHHHHHHhhC
Confidence            55555433  67778888876543           34677788888765   399999999999997

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.50  E-value=3.1e-05  Score=73.57  Aligned_cols=268  Identities=16%  Similarity=0.154  Sum_probs=178.7

Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhh---------cCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHH
Q 016714           95 TTQFRKLLSIERSPPIDEVIKAGVVPRFVEFL---------GRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMF  165 (384)
Q Consensus        95 ~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL---------~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L  165 (384)
                      +.+|+ +++.+ ....+.++...++..|..+-         ....++.+..+|++||+|+...++..+..+++.|..+.+
T Consensus         2 L~~LR-iLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    2 LETLR-ILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             HHHHH-HHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            34444 44554 44555666666677776665         233348999999999999999999999999999999999


Q ss_pred             HHhhcCC-----CHHHHHHHHHHHHhhhCCCCchhhHHHh-cCChHHHHHHhccc----------------chhHHHHHH
Q 016714          166 VQLLSSG-----SDDVREQAVWALGNVAGDSPSCRDLVLS-SGALMPLLAQLNEH----------------SKLSMLRNA  223 (384)
Q Consensus       166 ~~lL~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~i~~-~g~i~~L~~~l~~~----------------~~~~~~~~a  223 (384)
                      +..|+..     +.++.-.....|.-++...+..+..+.+ .+++..++..|..+                .+......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999875     7788888888888888777666655554 46777777766311                144567788


Q ss_pred             HHHHhhhhcCCCCCChhhh----hchHHHHHHhh---cc--CCHhHHHHHHHHHHHhccCChHHH-----------HHHH
Q 016714          224 TWTLSNFCRGKPPTPFEQV----KPALPILQRLI---HL--NDEEVLTDACWALSYLSDGPNDKI-----------QAVI  283 (384)
Q Consensus       224 ~~~L~~L~~~~~~~~~~~~----~~~~~~L~~lL---~~--~~~~i~~~a~~~l~~l~~~~~~~~-----------~~~~  283 (384)
                      +.++.|+....+.......    ..+++.+..++   ..  +.......+..+|.++--......           ....
T Consensus       160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~  239 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD  239 (446)
T ss_pred             HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence            8999999887644332222    44444455442   11  124567778888887732211110           0011


Q ss_pred             HcCChHHHHHhcCC-----C---ChhhHHHHHHHHHHhhcCChHHHHHHHH----------------cCchHHHHHHhcc
Q 016714          284 EAGVCPRLVELLMH-----P---SATVLIPALRTVGNIVTGDDAQTQFVID----------------NGVLPCLYQLLTQ  339 (384)
Q Consensus       284 ~~g~~~~L~~lL~~-----~---~~~v~~~a~~~l~nl~~~~~~~~~~i~~----------------~g~l~~L~~ll~~  339 (384)
                      ....+..|+.+|..     .   -.....+.+.+|.+++.........+..                ..+-..|++++.+
T Consensus       240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~  319 (446)
T PF10165_consen  240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS  319 (446)
T ss_pred             ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence            22346666666632     1   1356788999999999877655554432                2567789999999


Q ss_pred             CCchhHHHHHHHHHHHHhcCCHHHHH
Q 016714          340 NHKKSIKKEACWTISNITAGNRAQIQ  365 (384)
Q Consensus       340 ~~~~~v~~~a~~~L~nl~~~~~~~i~  365 (384)
                      . .+.++..++-.+..+|..+....-
T Consensus       320 ~-~~~~k~~vaellf~Lc~~d~~~~v  344 (446)
T PF10165_consen  320 P-DPQLKDAVAELLFVLCKEDASRFV  344 (446)
T ss_pred             C-CchHHHHHHHHHHHHHhhhHHHHH
Confidence            9 599999998888888875555433

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.50  E-value=1.5e-05  Score=74.45  Aligned_cols=273  Identities=13%  Similarity=0.164  Sum_probs=167.3

Q ss_pred             cCHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 016714           74 ESIPSMVQGVWS-------EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVA  146 (384)
Q Consensus        74 ~~l~~lv~~l~s-------~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~  146 (384)
                      +.+|.++++|..       ++...-..|..+|.-+.... .   +.+.+. ++..+=+-+.+++ ..-++.|+.+++.+.
T Consensus       321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~-g---d~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm  394 (858)
T COG5215         321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK-G---DKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVM  394 (858)
T ss_pred             HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh-h---hHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhh
Confidence            468999999874       23445566666665443211 1   111111 2222333345556 677899999999998


Q ss_pred             cCCch-hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc--cchhHHHHHH
Q 016714          147 SGTSE-HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE--HSKLSMLRNA  223 (384)
Q Consensus       147 ~~~~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~--~~~~~~~~~a  223 (384)
                      .+..+ ++..++ ..++|.+...+.++..-+++.++||+|.|+.+-+   +.+-.+|.+++.+.....  ..++.+..++
T Consensus       395 ~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~nc  470 (858)
T COG5215         395 HGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINC  470 (858)
T ss_pred             cCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhh
Confidence            87544 444455 4789999999998889999999999999986533   445556666666654422  2356778899


Q ss_pred             HHHHhhhhcCCCCCC---hhhhhchHHHHHHhh-c-----cCCHhHHHHHHHHHHHhccCChHHHHHH------------
Q 016714          224 TWTLSNFCRGKPPTP---FEQVKPALPILQRLI-H-----LNDEEVLTDACWALSYLSDGPNDKIQAV------------  282 (384)
Q Consensus       224 ~~~L~~L~~~~~~~~---~~~~~~~~~~L~~lL-~-----~~~~~i~~~a~~~l~~l~~~~~~~~~~~------------  282 (384)
                      +|...||..+-+...   ...+.+..+.++.-| +     .++...+..+..+|+.|....++....+            
T Consensus       471 sw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl  550 (858)
T COG5215         471 SWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKL  550 (858)
T ss_pred             HHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence            999999998753222   122233333333222 1     2334455555555555544322211111            


Q ss_pred             -------------------------------------------HHcCChHHHHHhcCCCCh-hhHHHHHHHHHHhhcCCh
Q 016714          283 -------------------------------------------IEAGVCPRLVELLMHPSA-TVLIPALRTVGNIVTGDD  318 (384)
Q Consensus       283 -------------------------------------------~~~g~~~~L~~lL~~~~~-~v~~~a~~~l~nl~~~~~  318 (384)
                                                                 ++..++..++++|.+.++ .+-...+.+|++++..-.
T Consensus       551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~  630 (858)
T COG5215         551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLE  630 (858)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH
Confidence                                                       111234455555555433 344567888888887655


Q ss_pred             HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          319 AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       319 ~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ++..... ..++|+|.+-|... +..+...|...++.++.
T Consensus       631 e~Fe~y~-~~fiPyl~~aln~~-d~~v~~~avglvgdlan  668 (858)
T COG5215         631 ERFEQYA-SKFIPYLTRALNCT-DRFVLNSAVGLVGDLAN  668 (858)
T ss_pred             HHHHHHH-hhhhHHHHHHhcch-hHHHHHHHHHHHHHHHH
Confidence            5554333 46899999999777 78888889999988885

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=3.3e-06  Score=78.04  Aligned_cols=242  Identities=13%  Similarity=0.177  Sum_probs=171.7

Q ss_pred             HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC
Q 016714          112 EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS  191 (384)
Q Consensus       112 ~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  191 (384)
                      .+.+..+.+.|+++|+.++ ..+..-+...++|..-.-+.-+..+++.|++..|+.++.+.+..++....|+|..+..++
T Consensus       426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync  504 (743)
T COG5369         426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC  504 (743)
T ss_pred             hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence            3557788999999999987 677888888899988777778888999999999999999999999999999999998655


Q ss_pred             Cc-hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-C-CCChhhh------hchHHHHHHhhccCCHhHHH
Q 016714          192 PS-CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-P-PTPFEQV------KPALPILQRLIHLNDEEVLT  262 (384)
Q Consensus       192 ~~-~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~-~~~~~~~------~~~~~~L~~lL~~~~~~i~~  262 (384)
                      .. .+-..+..-++..++++. .+++-.++..++..|.|+.-+. . +......      .-++..|.+.+...+|--..
T Consensus       505 q~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~  583 (743)
T COG5369         505 QKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL  583 (743)
T ss_pred             cchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence            43 333455666788899988 7888889999999999998743 2 1222221      22445566666777766666


Q ss_pred             HHHHHHHHhccCChHHHHHHHHc-CChHHHHHhcC---------------------------------------------
Q 016714          263 DACWALSYLSDGPNDKIQAVIEA-GVCPRLVELLM---------------------------------------------  296 (384)
Q Consensus       263 ~a~~~l~~l~~~~~~~~~~~~~~-g~~~~L~~lL~---------------------------------------------  296 (384)
                      ..|..|.+++..+++..+.+.+. ..+..+.++|.                                             
T Consensus       584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~  663 (743)
T COG5369         584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHL  663 (743)
T ss_pred             hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCCc
Confidence            66888877776665544443322 22222222221                                             


Q ss_pred             --------CCChhhHHHHHHHHHHhhcC---Ch------HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHH
Q 016714          297 --------HPSATVLIPALRTVGNIVTG---DD------AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI  356 (384)
Q Consensus       297 --------~~~~~v~~~a~~~l~nl~~~---~~------~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl  356 (384)
                              .++.+...+..|.+-|+.-.   ..      +..+.+.+.|+-+.+.++..++ ++.+|+.+--+|.|+
T Consensus       664 D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~-Sl~vrek~~taL~~l  739 (743)
T COG5369         664 DNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKD-SLIVREKIGTALENL  739 (743)
T ss_pred             cccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccC-cHHHHHHHHHHHHhh
Confidence                    01223455666777665421   11      5556677788888888888887 889999998888876

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.45  E-value=6.8e-06  Score=76.60  Aligned_cols=265  Identities=16%  Similarity=0.086  Sum_probs=169.3

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 016714           87 DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFV  166 (384)
Q Consensus        87 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~  166 (384)
                      +..+++.|+.+|.+-+-.-+.....+--..-++...++.-+.++ .+++..|..||..|..-+....+...+.-......
T Consensus       191 ~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~  269 (858)
T COG5215         191 TSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTG  269 (858)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677778777776221100000000001123445555656666 89999999999999887777777777766667777


Q ss_pred             HhhcCCCHHHHHHHHHHHHhhhCCCCchhhHH----------------HhcCChHHHHHHhcc-c-----chhHHHHHHH
Q 016714          167 QLLSSGSDDVREQAVWALGNVAGDSPSCRDLV----------------LSSGALMPLLAQLNE-H-----SKLSMLRNAT  224 (384)
Q Consensus       167 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i----------------~~~g~i~~L~~~l~~-~-----~~~~~~~~a~  224 (384)
                      ..++++++++..+|+...+.+|.+.-...-.+                .-.+++|.|+++|.. +     .+..+-..+.
T Consensus       270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~  349 (858)
T COG5215         270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS  349 (858)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence            88999999999999988888875321110000                012367888888854 1     1334555555


Q ss_pred             HHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHH
Q 016714          225 WTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLI  304 (384)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~  304 (384)
                      .+|--++....+   ..+.+++..+-+-+++++..-+..+.-+++.+..++.+....-+-+..+|.+...+.++.--++.
T Consensus       350 sCLqlfaq~~gd---~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~  426 (858)
T COG5215         350 SCLQLFAQLKGD---KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKS  426 (858)
T ss_pred             HHHHHHHHHhhh---HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhh
Confidence            566555544322   23355666666778899999999999999999888664333223346678888888877788899


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhc--cCCchhHHHHHHHHHHHHhc
Q 016714          305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLT--QNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       305 ~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~--~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .++||+|.|+.+-+..+..   +|-++..+....  -.+.+.+...++|..-|++.
T Consensus       427 ttAwc~g~iad~va~~i~p---~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~  479 (858)
T COG5215         427 TTAWCFGAIADHVAMIISP---CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVD  479 (858)
T ss_pred             HHHHHHHHHHHHHHHhcCc---cccccHHHHHHHhhhhccchHHhhhHHHHHhHHH
Confidence            9999999998644332221   232222222111  11246788899999999985

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=1.8e-05  Score=68.54  Aligned_cols=242  Identities=17%  Similarity=0.123  Sum_probs=153.2

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHH--hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714          119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVI--EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD  196 (384)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (384)
                      ...++.+|.+.+ |.++..|...+.+++..   ..+.+.  +.-.++.+.+++....+  .+.|+.+|.|++.+.. .+.
T Consensus         5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~   77 (353)
T KOG2973|consen    5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRK   77 (353)
T ss_pred             HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHH
Confidence            345889999988 99999999999998875   222222  23467888999887666  7889999999998775 666


Q ss_pred             HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh-------hchHHHHHHhhccCCH--hHHHHHHHH
Q 016714          197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV-------KPALPILQRLIHLNDE--EVLTDACWA  267 (384)
Q Consensus       197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-------~~~~~~L~~lL~~~~~--~i~~~a~~~  267 (384)
                      .+++. .+..++..+ .++...+....|.+|+||++..........       .+.+.....+.+++-.  .-..+....
T Consensus        78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            66665 555566666 444456778899999999997532211111       2333344444443321  335667777


Q ss_pred             HHHhccCChHHHHHHHHcC-C-hHHHHHhcCCCChhhHH-HHHHHHHHhhcCChHHHHHHH-HcCchHHHHHHhccC---
Q 016714          268 LSYLSDGPNDKIQAVIEAG-V-CPRLVELLMHPSATVLI-PALRTVGNIVTGDDAQTQFVI-DNGVLPCLYQLLTQN---  340 (384)
Q Consensus       268 l~~l~~~~~~~~~~~~~~g-~-~~~L~~lL~~~~~~v~~-~a~~~l~nl~~~~~~~~~~i~-~~g~l~~L~~ll~~~---  340 (384)
                      +++++.....+.- +.+.. + ...+..+ .+.+..++. -.+.+|-|+|.....+-..+- ..+++|.++--+..+   
T Consensus       156 f~nls~~~~gR~l-~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  156 FANLSQFEAGRKL-LLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHHHhhhhhhhhH-hcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCcccc
Confidence            8888876655442 33322 2 2233333 334555554 488899999886655543222 123455444322221   


Q ss_pred             ----------------------CchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          341 ----------------------HKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       341 ----------------------~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                                            .++.+|+.-.-+|.-+++ +..-.+.+.+.|+
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgv  286 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGV  286 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCc
Confidence                                  267899998889988888 4444677888887

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=0.00012  Score=70.35  Aligned_cols=218  Identities=16%  Similarity=0.179  Sum_probs=157.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      -+.++.+|.++-+-++..|+-.+.++.-.- ++..+     ..+|.|++-|.++| |.++-.|..+++.+|..+|.+-- 
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL-  217 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL-  217 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc-
Confidence            366677777888888888887777765432 22222     35889999999888 89999999999999987776432 


Q ss_pred             HHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh--hhc
Q 016714          156 VIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN--FCR  232 (384)
Q Consensus       156 i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~--L~~  232 (384)
                          ..-|.+.++|.. .+-=+....+..+++|+--.|...     ...+++|.+++.+..-..++..+..++..  ++.
T Consensus       218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence                345777777754 444456667777888876666432     34688999999555555666666666543  333


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714          233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN  312 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (384)
                      +. ......+.-++..|-.++..+|+.+..-++.|++.+....+..++..     -+.+++.|.+.++.++..|+..+.-
T Consensus       289 g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~g  362 (877)
T KOG1059|consen  289 GM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYG  362 (877)
T ss_pred             CC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHH
Confidence            31 23345557788899999999999999999999999998777555432     4678899999999999999999988


Q ss_pred             hhcC
Q 016714          313 IVTG  316 (384)
Q Consensus       313 l~~~  316 (384)
                      ++..
T Consensus       363 mVsk  366 (877)
T KOG1059|consen  363 MVSK  366 (877)
T ss_pred             Hhhh
Confidence            8763

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.38  E-value=4.3e-06  Score=63.31  Aligned_cols=117  Identities=14%  Similarity=0.091  Sum_probs=100.2

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714          117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD  196 (384)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (384)
                      +.+..|+.-.....+.+-++...--|.|.+.+ +.+-..+.+.++++.++..|..+++.+++.++..|+|+|.+.. +..
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence            45667777665544488999999999999985 8888899999999999999999999999999999999998876 667


Q ss_pred             HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714          197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP  236 (384)
Q Consensus       197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~  236 (384)
                      .+.+.++++.++..+ +++...+...++.++..|+.+...
T Consensus        94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~Rt  132 (173)
T KOG4646|consen   94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGERT  132 (173)
T ss_pred             HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcccc
Confidence            889999999999998 777777888899999999987533

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.37  E-value=6.3e-05  Score=69.27  Aligned_cols=230  Identities=27%  Similarity=0.337  Sum_probs=162.5

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .++.+++.+.+.++.++..+++.+..+-..            -.+|.+..+|.+.+ +.++..|+.+|+.+-..      
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~------  104 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGDP------  104 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh------
Confidence            678889999999999999999887755332            26999999999998 89999999999887542      


Q ss_pred             HHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccch-----------hHHHHH
Q 016714          155 VVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSK-----------LSMLRN  222 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~-----------~~~~~~  222 (384)
                           .+++.|+.++. +++..++..+.++|+.+-...           .+.+++..+.....           ..++..
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~  168 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA  168 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence                 46899999998 599999999999999984221           36777887743221           123444


Q ss_pred             HHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhh
Q 016714          223 ATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATV  302 (384)
Q Consensus       223 a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v  302 (384)
                      +...|..+-.          ...++.+..++...+..++..+..+++.+....         ..+.+.+...+.+++..+
T Consensus       169 a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v  229 (335)
T COG1413         169 AAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV  229 (335)
T ss_pred             HHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence            4444444433          245678888898888999999999999987654         344678888889999999


Q ss_pred             HHHHHHHHHHhhcCChHHH--HHHHH------------------cCchHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714          303 LIPALRTVGNIVTGDDAQT--QFVID------------------NGVLPCLYQLLTQNHKKSIKKEACWTISNITAG  359 (384)
Q Consensus       303 ~~~a~~~l~nl~~~~~~~~--~~i~~------------------~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  359 (384)
                      +..++..+|.+-.......  ..+.+                  ......+...+.+. ...++..+++.+.-+...
T Consensus       230 r~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         230 RKAALLALGEIGDEEAVDALAKALEDEDVILALLAAAALGALDLAEAALPLLLLLIDE-ANAVRLEAALALGQIGQE  305 (335)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHhccchHHHHHHHHHhcccCchhhHHHHHHHhhcc-hhhHHHHHHHHHHhhccc
Confidence            9999999988754322111  11110                  01133344444444 566777777777766653

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.33  E-value=3.5e-05  Score=67.04  Aligned_cols=224  Identities=16%  Similarity=0.178  Sum_probs=152.5

Q ss_pred             hHHHHHHHHHHHHHhcCCchhHHHHHh-cCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHHh-cCChHHH
Q 016714          132 PQLQFEAAWALTNVASGTSEHTRVVIE-HGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVLS-SGALMPL  207 (384)
Q Consensus       132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~-~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~~-~g~i~~L  207 (384)
                      +-.+.-|..|+.++... ++.|..... ..+-..++.++++  ....++-+.+.+++-+.-... +.+.+-+ ...+.-|
T Consensus       163 ~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~~dli~dl  240 (432)
T COG5231         163 FLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHH
Confidence            55678899999999885 677766554 3455677888876  457788888888888875543 3322221 1245566


Q ss_pred             HHHhcccchhHHHHHHHHHHhhhhcCCCCCCh--hhhhc-hHHHHHHhh--ccCCHhHHHHHHHHHHHhccC--------
Q 016714          208 LAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF--EQVKP-ALPILQRLI--HLNDEEVLTDACWALSYLSDG--------  274 (384)
Q Consensus       208 ~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~--~~~~~-~~~~L~~lL--~~~~~~i~~~a~~~l~~l~~~--------  274 (384)
                      +.+........+.+-++..+.|++...|....  ....+ +.|..-.++  ...|++++.+.-.+=+.|-..        
T Consensus       241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD  320 (432)
T COG5231         241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD  320 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            67775666788999999999999995433221  12233 333333333  234666665544333222210        


Q ss_pred             ----------------------ChHHHHHHHHc--CChHHHHHhcCCCChh-hHHHHHHHHHHhhcCChHHHHHHHHcCc
Q 016714          275 ----------------------PNDKIQAVIEA--GVCPRLVELLMHPSAT-VLIPALRTVGNIVTGDDAQTQFVIDNGV  329 (384)
Q Consensus       275 ----------------------~~~~~~~~~~~--g~~~~L~~lL~~~~~~-v~~~a~~~l~nl~~~~~~~~~~i~~~g~  329 (384)
                                            -..+.+.+.+.  .++..|.++|+++.+. ...-||.-++.++...|+....+.+.|+
T Consensus       321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~  400 (432)
T COG5231         321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV  400 (432)
T ss_pred             HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence                                  01223333333  5688899999887766 5677999999999999999999999999


Q ss_pred             hHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          330 LPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       330 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      -..++.+++++ +++++=+|..++.-+..
T Consensus       401 k~~im~L~nh~-d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         401 KEIIMNLINHD-DDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence            99999999999 99999999988876653

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.32  E-value=1.9e-05  Score=71.99  Aligned_cols=186  Identities=18%  Similarity=0.201  Sum_probs=140.5

Q ss_pred             HHHHHHcCCHHHHHHhhcCCCC-hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhh
Q 016714          110 IDEVIKAGVVPRFVEFLGRHDM-PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNV  187 (384)
Q Consensus       110 ~~~~~~~g~i~~Lv~lL~~~~~-~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl  187 (384)
                      .+.+...|++..|+.++..++. ..++.+|++.|..+..  .++++.+...| +..++.+-+ .+.+++....+..|+++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3456677999999999998772 4679999999999877  78888888877 444444444 36688999999999999


Q ss_pred             hCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC-CChhhh-hchHHHHHHhhccCCHhHHHHHH
Q 016714          188 AGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP-TPFEQV-KPALPILQRLIHLNDEEVLTDAC  265 (384)
Q Consensus       188 ~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~  265 (384)
                      ..++.+....+++.|+++.++--. ...++.++++++.+|.|+.-+... .....+ ..+-+-|..+-.+.|+-.+.+||
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            999988888889999999988887 667799999999999999887522 222233 34444566666677888899999


Q ss_pred             HHHHHhccCChHHHHHHHHcCChHHHHHhcCCCCh
Q 016714          266 WALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA  300 (384)
Q Consensus       266 ~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~  300 (384)
                      -+++.++...+- ...+..+|.+..+-.++.+.++
T Consensus       329 lAV~vlat~KE~-E~~VrkS~TlaLVEPlva~~DP  362 (832)
T KOG3678|consen  329 LAVAVLATNKEV-EREVRKSGTLALVEPLVASLDP  362 (832)
T ss_pred             HHHhhhhhhhhh-hHHHhhccchhhhhhhhhccCc
Confidence            999999876542 3345666776666666655554

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.31  E-value=1.9e-05  Score=59.94  Aligned_cols=131  Identities=17%  Similarity=0.159  Sum_probs=109.8

Q ss_pred             hcCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           73 LESIPSMVQGVW-SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        73 ~~~l~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      ++-+..++...+ ..+.+.+.+.+..|.+++-.  +-+...+.+..++..++..|..++ ..+...+...|+|+|.+ +.
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~d-~~   90 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCLD-KT   90 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhccC-hH
Confidence            455677777666 45677888888889988753  566777889999999999999998 89999999999999995 88


Q ss_pred             hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHh
Q 016714          152 HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQL  211 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l  211 (384)
                      +.+.+++.+++|.++..++++.......++.++..++-.....++.+..    ++.++.+
T Consensus        91 n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v  146 (173)
T KOG4646|consen   91 NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTV  146 (173)
T ss_pred             HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHH
Confidence            8999999999999999999999999999999999999777667777655    4445544

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=6.6e-06  Score=76.14  Aligned_cols=201  Identities=12%  Similarity=0.081  Sum_probs=147.6

Q ss_pred             HHHHHHHHH--HhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc
Q 016714          136 FEAAWALTN--VASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE  213 (384)
Q Consensus       136 ~~a~~~L~n--l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~  213 (384)
                      .-++|++.-  ++..-..-|.-+.+..+.+.|+++|++++..+.-.+...++|+...-...+..+++.|++..|++++ .
T Consensus       405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v-~  483 (743)
T COG5369         405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV-M  483 (743)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh-h
Confidence            335555544  4333233444455677889999999998888888889999999887777899999999999999999 5


Q ss_pred             cchhHHHHHHHHHHhhhhcCC-CCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChH---HHHHHHHc---
Q 016714          214 HSKLSMLRNATWTLSNFCRGK-PPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPND---KIQAVIEA---  285 (384)
Q Consensus       214 ~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~---~~~~~~~~---  285 (384)
                      +.|..++.+..|.+..+..+. .+..+... .-++..++.+...++..++..++..+.|++.....   ..+.+++.   
T Consensus       484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~  563 (743)
T COG5369         484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR  563 (743)
T ss_pred             cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence            667889999999999999886 33344444 66788899999999999999999999999874322   22222221   


Q ss_pred             -CChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc-CchHHHHHHh
Q 016714          286 -GVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN-GVLPCLYQLL  337 (384)
Q Consensus       286 -g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~-g~l~~L~~ll  337 (384)
                       -+.+.|++-+...+|-...+.+.+|.++++.++...+.++.. .++..+..+|
T Consensus       564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence             145666777777888888888999999998877666555432 3444444443

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.26  E-value=3.1e-06  Score=61.34  Aligned_cols=87  Identities=29%  Similarity=0.454  Sum_probs=69.8

Q ss_pred             HHHHHHhh-cCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714          119 VPRFVEFL-GRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL  197 (384)
Q Consensus       119 i~~Lv~lL-~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (384)
                      ||.|++.| ++++ +.++..++++|+.+..  +         .+++.|+.++.++++.++..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            68899999 6666 9999999999995532  1         45899999999999999999999999983         


Q ss_pred             HHhcCChHHHHHHhcccchhHHHHHHHHHHh
Q 016714          198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLS  228 (384)
Q Consensus       198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~  228 (384)
                        ....++.|.+++.++.+..++..+.++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              12378889999966666667888888774

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=0.00033  Score=68.20  Aligned_cols=101  Identities=17%  Similarity=0.225  Sum_probs=67.5

Q ss_pred             hHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 016714          245 ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFV  324 (384)
Q Consensus       245 ~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i  324 (384)
                      ++..|-++|.+.|..++.-++..|.+....++..++.   +  =..+++.|++++..++..|+..+..++..+  ....+
T Consensus       314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr---H--r~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~m  386 (866)
T KOG1062|consen  314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR---H--RSTILECLKDPDVSIKRRALELSYALVNES--NVRVM  386 (866)
T ss_pred             HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH---H--HHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHHH
Confidence            3455566666667777777777777766665543332   1  256788889999999999999888887533  23332


Q ss_pred             HHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          325 IDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       325 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                           +..|+..|.+. +++.+...+.-+..++.
T Consensus       387 -----v~eLl~fL~~~-d~~~k~~~as~I~~laE  414 (866)
T KOG1062|consen  387 -----VKELLEFLESS-DEDFKADIASKIAELAE  414 (866)
T ss_pred             -----HHHHHHHHHhc-cHHHHHHHHHHHHHHHH
Confidence                 34577777777 77777777766666664

>PF05536 Neurochondrin: Neurochondrin

Probab=98.24  E-value=8.4e-05  Score=72.20  Aligned_cols=235  Identities=17%  Similarity=0.124  Sum_probs=162.1

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc--HHHHHHcCCHHHHHHhhcCCC------ChHHHHHHHHHHHHH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPP--IDEVIKAGVVPRFVEFLGRHD------MPQLQFEAAWALTNV  145 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~i~~Lv~lL~~~~------~~~~~~~a~~~L~nl  145 (384)
                      ..+.+.+++|++.+.+.++.++-.+.+++..++...  .+.+.++=+.+.+-.+|.++.      ....+..|..+|..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            357888999999988888889999999987642112  234777767888888887622      256778888899988


Q ss_pred             hcCCchhH--HHHHhcCChHHHHHhhcCCCH-HHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHH
Q 016714          146 ASGTSEHT--RVVIEHGAVPMFVQLLSSGSD-DVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRN  222 (384)
Q Consensus       146 ~~~~~~~~--~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~  222 (384)
                      +.. ++..  ..++  +-||.|+..+.+.+. .+...|+.+|..++... .-+..+++.|+++.|.+.+.+  .......
T Consensus        85 ~~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei~~~--~~~~~E~  158 (543)
T PF05536_consen   85 CRD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEIIPN--QSFQMEI  158 (543)
T ss_pred             cCC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHHHHh--CcchHHH
Confidence            884 4433  3333  579999999988766 99999999999999544 467888999999999999954  4445667


Q ss_pred             HHHHHhhhhcCCCC----CChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHH-HHHHHHcCC----hHHHHH
Q 016714          223 ATWTLSNFCRGKPP----TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDK-IQAVIEAGV----CPRLVE  293 (384)
Q Consensus       223 a~~~L~~L~~~~~~----~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~-~~~~~~~g~----~~~L~~  293 (384)
                      ++.++.+++.....    ........+++.+...+...........|..|+.+....+.. ........+    ...+..
T Consensus       159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~  238 (543)
T PF05536_consen  159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD  238 (543)
T ss_pred             HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence            77777777765321    112223456667777777767777788888888887665311 111122233    344444


Q ss_pred             hcCC-CChhhHHHHHHHHHHhh
Q 016714          294 LLMH-PSATVLIPALRTVGNIV  314 (384)
Q Consensus       294 lL~~-~~~~v~~~a~~~l~nl~  314 (384)
                      +|.+ ..+.-+.+++...+.+.
T Consensus       239 iL~sr~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  239 ILQSRLTPSQRDPALNLAASLL  260 (543)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHH
Confidence            5544 35566777777777765

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=0.0002  Score=68.83  Aligned_cols=218  Identities=15%  Similarity=0.122  Sum_probs=159.5

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL  197 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (384)
                      +-+-++.+|+++. |-++..|..++..+....++...     .++|.|..-|.++++.|+..|+.+++.||..+|...- 
T Consensus       145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL-  217 (877)
T KOG1059|consen  145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-  217 (877)
T ss_pred             HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-
Confidence            4566778888877 78888888888888775555332     4689999999999999999999999999998886422 


Q ss_pred             HHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCC-HhHHHHHHHHHH--HhccC
Q 016714          198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLND-EEVLTDACWALS--YLSDG  274 (384)
Q Consensus       198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~i~~~a~~~l~--~l~~~  274 (384)
                          ..-|.+.++|..+.+--++...+..+.+|+--.|    .....++|.|..++++.. ..++.++..++.  +++.+
T Consensus       218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence                1456777888666666677777888888876544    233577888888888765 456666666652  44444


Q ss_pred             ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHH
Q 016714          275 PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTIS  354 (384)
Q Consensus       275 ~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~  354 (384)
                      .++....+  .-++..|-.++.+.++.++--++.+++-|....+...+.     --+.+++.|.+. ++.+|-.|.-.|.
T Consensus       290 ~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~  361 (877)
T KOG1059|consen  290 MSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY  361 (877)
T ss_pred             CCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence            22221111  124677777888999999999999999999877765543     245678889888 8999999988888


Q ss_pred             HHhc
Q 016714          355 NITA  358 (384)
Q Consensus       355 nl~~  358 (384)
                      -|+.
T Consensus       362 gmVs  365 (877)
T KOG1059|consen  362 GMVS  365 (877)
T ss_pred             HHhh
Confidence            8875

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.21  E-value=1.9e-05  Score=68.40  Aligned_cols=189  Identities=16%  Similarity=0.120  Sum_probs=119.1

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCC-CCCcHHHHHHc--CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcC
Q 016714           84 WSEDPALQLEATTQFRKLLSIE-RSPPIDEVIKA--GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG  160 (384)
Q Consensus        84 ~s~~~~~~~~a~~~l~~l~s~~-~~~~~~~~~~~--g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g  160 (384)
                      .+.+++.+..|+..|+.++.+. .......+.+.  .+++.+...+.+.. ..+...|+.++..++..-........+ .
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~-~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYAD-I   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence            5678999999999999998764 12333333321  56677777777766 789999999999998754444444443 5


Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC--CCC
Q 016714          161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP--PTP  238 (384)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~--~~~  238 (384)
                      .+|.|+..+.+.+..+++.|..+|..++...+.. ..     .+..++.....+.++.++..++..+..+....+  ...
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-~~-----~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYS-PK-----ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---H-----HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-HH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            7899999999999999999999999998765511 11     213333333377888898888888888776654  111


Q ss_pred             hh---hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHH
Q 016714          239 FE---QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQ  280 (384)
Q Consensus       239 ~~---~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~  280 (384)
                      ..   ....+++.+.+++...+++++..|-.++..+....++...
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            11   2356888999999999999999999999888655444433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.19  E-value=4.9e-05  Score=76.74  Aligned_cols=261  Identities=14%  Similarity=0.121  Sum_probs=167.9

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CCcHHH-HHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIER-SPPIDE-VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~-~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      .+|.++.++.++...+|..|+.+|..++..-+ -++.+. +.-.-++|.|-.++.+.+...++..-|.+|+.+|..-.  
T Consensus       463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~--  540 (1431)
T KOG1240|consen  463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY--  540 (1431)
T ss_pred             hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--
Confidence            57999999999999999999999999886432 233333 44556789999998874436777777888888876311  


Q ss_pred             HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                        .+.+.+--.....++.+++.+       ...+  .........+.+  .+..++.-|..++++-+++..+..|.-||.
T Consensus       541 --rFle~~q~~~~~g~~n~~nse-------t~~~--~~~~~~~~~L~~--~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~  607 (1431)
T KOG1240|consen  541 --RFLELTQELRQAGMLNDPNSE-------TAPE--QNYNTELQALHH--TVEQMVSSLLSDSPPIVKRALLESIIPLCV  607 (1431)
T ss_pred             --HHHHHHHHHHhcccccCcccc-------cccc--cccchHHHHHHH--HHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence              122211111112223333322       0000  001111111211  344444444366666777888878888886


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714          233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN  312 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (384)
                      --.  ......-+++.|..+|...|+.++..-...|..++..-.-+   -++.+++|.|.+-|.++.+.|...|+.++.-
T Consensus       608 FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~  682 (1431)
T KOG1240|consen  608 FFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SVSEYLLPLLQQGLTDGEEAVIVSALGSLSI  682 (1431)
T ss_pred             Hhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eHHHHHHHHHHHhccCcchhhHHHHHHHHHH
Confidence            421  11112347788999999999999988888888776542211   1455778999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       313 l~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ++...--....++  .+++....+|.++ +..||..++..+..++.
T Consensus       683 Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  683 LIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             HHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            8864322222222  3567778888999 89999999999888775

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.18  E-value=8.7e-05  Score=68.37  Aligned_cols=188  Identities=26%  Similarity=0.334  Sum_probs=141.8

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714          117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD  196 (384)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (384)
                      ..++.+++++.+.+ ..++..+++.++.+..           .-+++.+..++.+.++.++..++.+|+.+-.  +    
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~----  104 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--P----  104 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--h----
Confidence            46888999999887 8999999999887754           2478999999999999999999999998731  1    


Q ss_pred             HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCH------------hHHHHH
Q 016714          197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDE------------EVLTDA  264 (384)
Q Consensus       197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~------------~i~~~a  264 (384)
                           ..+++|+..+..+.+..++..+.++|..+-..          ..++.++..+.....            .++..+
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                 25788999995578888999999999887764          225555566655442            244444


Q ss_pred             HHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchh
Q 016714          265 CWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKS  344 (384)
Q Consensus       265 ~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~  344 (384)
                      ..+++.+-           ....++.+...+.+.+..++..|..+++.+....         ..+.+.+...+.+. +..
T Consensus       170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            44444432           2234678888899888899999999999998754         23456677778777 788


Q ss_pred             HHHHHHHHHHHHhc
Q 016714          345 IKKEACWTISNITA  358 (384)
Q Consensus       345 v~~~a~~~L~nl~~  358 (384)
                      +|..++.+++.+-.
T Consensus       229 vr~~~~~~l~~~~~  242 (335)
T COG1413         229 VRKAALLALGEIGD  242 (335)
T ss_pred             HHHHHHHHhcccCc
Confidence            88888888877764

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.17  E-value=2.1e-05  Score=75.55  Aligned_cols=234  Identities=16%  Similarity=0.164  Sum_probs=147.1

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC-hHHHHHHHHHHHHHhcCCchhH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDM-PQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~-~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      .+.+++..++++.++.+.-++....++.+.-....++.-.+.-++..++-.++..+. ..+-.....++.|-..+  ..+
T Consensus       717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~--r~k  794 (1172)
T KOG0213|consen  717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG--RVK  794 (1172)
T ss_pred             HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh--ccc
Confidence            356667777777777777777777766654323333333344445555555544331 22333333333332221  001


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch--hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC--RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~  231 (384)
                      . .. ..++..++..|++.++.++++|+-.++.++.--..+  -..+...|.  .|.+.| ....++++...+.++..++
T Consensus       795 p-yl-pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~  869 (1172)
T KOG0213|consen  795 P-YL-PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIV  869 (1172)
T ss_pred             c-ch-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHH
Confidence            1 11 124566778889999999999999999987321111  122233332  356666 6667888888887777766


Q ss_pred             cCC-CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714          232 RGK-PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV  310 (384)
Q Consensus       232 ~~~-~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l  310 (384)
                      ... -.....-+.+++|.|...|.+....++.++...++.+++..++.+..--=..+.=-|+++|...+..++..|..++
T Consensus       870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf  949 (1172)
T KOG0213|consen  870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF  949 (1172)
T ss_pred             HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            543 1222334578999999999999999999999999999998776443211113445577778888899999999999


Q ss_pred             HHhhc
Q 016714          311 GNIVT  315 (384)
Q Consensus       311 ~nl~~  315 (384)
                      |.|+.
T Consensus       950 G~Iak  954 (1172)
T KOG0213|consen  950 GYIAK  954 (1172)
T ss_pred             hHHHH
Confidence            99974

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.17  E-value=5.3e-06  Score=60.07  Aligned_cols=87  Identities=29%  Similarity=0.447  Sum_probs=70.6

Q ss_pred             HHHHHHhh-ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 016714          246 LPILQRLI-HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFV  324 (384)
Q Consensus       246 ~~~L~~lL-~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i  324 (384)
                      +|.|++.| .++++.++..++++|+.+-   ..        .+++.|..++.++++.++..|+++||.+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57888888 8889999999999999652   11        34789999999999999999999999883          


Q ss_pred             HHcCchHHHHHHhccCCchhHHHHHHHHHH
Q 016714          325 IDNGVLPCLYQLLTQNHKKSIKKEACWTIS  354 (384)
Q Consensus       325 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~  354 (384)
                       +...++.|.+++.++++..+|..|+++|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             12377889999988756677999999885

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=0.00081  Score=67.45  Aligned_cols=140  Identities=20%  Similarity=0.232  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCcHHHHH-----HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHH
Q 016714           90 LQLEATTQFRKLLSIERSPPIDEVI-----KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPM  164 (384)
Q Consensus        90 ~~~~a~~~l~~l~s~~~~~~~~~~~-----~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~  164 (384)
                      -..-++.+|+++++..  |....++     --|.++.++.+|.....+.++..|+.++.-+++ +.++...+...|.+..
T Consensus      1741 ~v~m~LtAL~Nli~~n--PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN--PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHhhC--cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence            4455889999999864  4333322     347888899988765448999999999977776 6899999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714          165 FVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       165 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~  234 (384)
                      |+.+|.+ -+..++.++.+|+.+++..+ .....++.|++..+..++....++..+..++..+..|...+
T Consensus      1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred             HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence            9999987 47789999999999998776 44556788999999999877778888888888888888765

>TIGR02270 conserved hypothetical protein

Probab=98.16  E-value=0.00025  Score=66.27  Aligned_cols=199  Identities=19%  Similarity=0.067  Sum_probs=139.6

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL  197 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (384)
                      .++.++..|....++.+...+++++.....  +         .++..|+..|.+.++.++..++.+|+.+-.        
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------
Confidence            578888889543337888877776642211  1         138899999999999999999999997621        


Q ss_pred             HHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChH
Q 016714          198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPND  277 (384)
Q Consensus       198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~  277 (384)
                         ....+.|+..+ .+.++.++..++.++....           ....+.+..+|.+.|+.++..++++++++-..   
T Consensus       116 ---~~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---  177 (410)
T TIGR02270       116 ---RQAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR---  177 (410)
T ss_pred             ---hHHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence               12456788888 7778888888886666521           12356788889999999999999999998542   


Q ss_pred             HHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH------------------HHc----CchHHHHH
Q 016714          278 KIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFV------------------IDN----GVLPCLYQ  335 (384)
Q Consensus       278 ~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i------------------~~~----g~l~~L~~  335 (384)
                              ..++.|...+.+.++.|+..|+..++.+-.  +.....+                  +..    ..++.|..
T Consensus       178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~  247 (410)
T TIGR02270       178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRE  247 (410)
T ss_pred             --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHH
Confidence                    345667788999999999999999887732  2111111                  111    34555666


Q ss_pred             HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 016714          336 LLTQNHKKSIKKEACWTISNITAGNRAQIQVHD  368 (384)
Q Consensus       336 ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~  368 (384)
                      ++..+   .++..++++++.+.  ++..+..++
T Consensus       248 ll~d~---~vr~~a~~AlG~lg--~p~av~~L~  275 (410)
T TIGR02270       248 LLQAA---ATRREALRAVGLVG--DVEAAPWCL  275 (410)
T ss_pred             HhcCh---hhHHHHHHHHHHcC--CcchHHHHH
Confidence            66554   48999999999765  444444444

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.15  E-value=0.00017  Score=71.34  Aligned_cols=278  Identities=14%  Similarity=0.143  Sum_probs=165.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHH
Q 016714           78 SMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVI  157 (384)
Q Consensus        78 ~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~  157 (384)
                      .+++.+.++|-+.++-|+.-|.+-+... ....+.=-+..++..++++|++.+ .++|..|..|++-+++.-.+.+   +
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~---l   83 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQ---L   83 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHH---H
Confidence            6788888999999999998887766543 222333334567899999999988 9999999999999986422221   1


Q ss_pred             hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHH----HHHHhcccch-hHHHHHHHHHHhhhhc
Q 016714          158 EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMP----LLAQLNEHSK-LSMLRNATWTLSNFCR  232 (384)
Q Consensus       158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~----L~~~l~~~~~-~~~~~~a~~~L~~L~~  232 (384)
                      + ..+..|+.-+-++....+..+.-.|-....+-+......+...+.+.    +...+....+ ..++-.++-.+..+..
T Consensus        84 e-~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   84 E-TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             H-HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence            1 23455665544444555554444443333222211122222233334    4444322222 2244444444443333


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC-ChhhHHHHHHHHH
Q 016714          233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP-SATVLIPALRTVG  311 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~-~~~v~~~a~~~l~  311 (384)
                      .....-.....+++..+...|+++-..++..++.+|+.++...+...-    .+++..|++-|..+ ++.....-+.+|+
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly----~~li~~Ll~~L~~~~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY----VELIEHLLKGLSNRTQMSATRTYIQCLA  238 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH----HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            222211123456667777778888899999999999999876553321    24566777777543 4444555667777


Q ss_pred             HhhcCChHHHHHHHHcCchHHHHHHh---ccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 016714          312 NIVTGDDAQTQFVIDNGVLPCLYQLL---TQNHKKSIKKEACWTISNITAGNRAQIQVH  367 (384)
Q Consensus       312 nl~~~~~~~~~~i~~~g~l~~L~~ll---~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l  367 (384)
                      .++.........-. ..++|.+.+..   +.. +.++|+...-++.-+....|..+-..
T Consensus       239 ~i~r~ag~r~~~h~-~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~  295 (1233)
T KOG1824|consen  239 AICRQAGHRFGSHL-DKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPH  295 (1233)
T ss_pred             HHHHHhcchhhccc-chhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhccc
Confidence            77643322221111 14677777777   555 78899999888888887665554443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.15  E-value=4.5e-06  Score=54.47  Aligned_cols=55  Identities=38%  Similarity=0.699  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhh
Q 016714          132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV  187 (384)
Q Consensus       132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl  187 (384)
                      |.+|..|+|+|++++...++....... .+++.|+.+|.++++.|+..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            568999999999998877776666544 6899999999999999999999999986

...

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.11  E-value=0.00011  Score=69.44  Aligned_cols=258  Identities=19%  Similarity=0.226  Sum_probs=165.8

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHh---cCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLL---SIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~---s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      .+..++..|++..+.++..|+.....++   +..  .....+...|.  .|.+.|.... |++.--.+.++..|.+. ..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c--~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv-~~  678 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKAC--GETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSV-HR  678 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhc--chHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhh-hc
Confidence            3566677888999999999887665443   321  11233334443  3566676666 77765555555555431 11


Q ss_pred             hHHH-HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch---hhHHHhcCChHHHHHHhcccchhHHHHHHHHHH
Q 016714          152 HTRV-VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC---RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTL  227 (384)
Q Consensus       152 ~~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L  227 (384)
                      .+.. ---.|++|.|..+|++.+.+++...+..++.||..+|++   |+.+.   +--.|++.| .+-+.+++++|..++
T Consensus       679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~L-ks~nKeiRR~A~~tf  754 (975)
T COG5181         679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSL-KSWNKEIRRNATETF  754 (975)
T ss_pred             ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHhhHHHHHhhhhhh
Confidence            1100 012489999999999999999999999999999877753   22221   233567777 566789999999999


Q ss_pred             hhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHH
Q 016714          228 SNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPAL  307 (384)
Q Consensus       228 ~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~  307 (384)
                      ..+++.-..      +.++..|+.-|...+-..+....-+|+-.+..+..       ..++|.|+.--..++..++.-.+
T Consensus       755 G~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvL  821 (975)
T COG5181         755 GCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVL  821 (975)
T ss_pred             hhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHH
Confidence            988876311      44566677667666666555555555554433211       13456666555667778888888


Q ss_pred             HHHHHhhcCChHH-HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          308 RTVGNIVTGDDAQ-TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       308 ~~l~nl~~~~~~~-~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ++++.+-....+. .+++.  .+.|.|-+.|.+. ++.-|..|.-++..++-
T Consensus       822 kam~fmFeyig~~s~dYvy--~itPlleDAltDr-D~vhRqta~nvI~Hl~L  870 (975)
T COG5181         822 KAMCFMFEYIGQASLDYVY--SITPLLEDALTDR-DPVHRQTAMNVIRHLVL  870 (975)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HhhHHHHhhhccc-chHHHHHHHHHHHHHhc
Confidence            8888775432222 22222  3677788888877 78888888888887775

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.11  E-value=0.00031  Score=69.48  Aligned_cols=231  Identities=16%  Similarity=0.200  Sum_probs=148.6

Q ss_pred             HHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           76 IPSMVQGVWS--EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        76 l~~lv~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      ...++..+++  ++..++..|+-.+..+-.+-...+     ..++-..+++.+++++ .+++..|+.+||+++.|+..  
T Consensus       819 a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~-----~~e~~~~iieaf~sp~-edvksAAs~ALGsl~vgnl~--  890 (1233)
T KOG1824|consen  819 ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP-----QNELKDTIIEAFNSPS-EDVKSAASYALGSLAVGNLP--  890 (1233)
T ss_pred             HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc-----chhhHHHHHHHcCCCh-HHHHHHHHHHhhhhhcCchH--
Confidence            3455555553  345677777777776643321222     2234447788889988 89999999999999987543  


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc---ccchhHHHHHHHHHHhhh
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN---EHSKLSMLRNATWTLSNF  230 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~L  230 (384)
                            ..+|.++..+.++ +.=+.-.+..|-.+......  +.+  ...++.+..+|.   .+.....+.-++.+|..|
T Consensus       891 ------~yLpfil~qi~sq-pk~QyLLLhSlkevi~~~sv--d~~--~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL  959 (1233)
T KOG1824|consen  891 ------KYLPFILEQIESQ-PKRQYLLLHSLKEVIVSASV--DGL--KPYVEKIWALLFKHCECAEEGTRNVVAECLGKL  959 (1233)
T ss_pred             ------hHHHHHHHHHhcc-hHhHHHHHHHHHHHHHHhcc--chh--hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhH
Confidence                  3567777776653 22222222222222211100  000  112333333332   233444566677788888


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714          231 CRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV  310 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l  310 (384)
                      +-..|       ...+|.|-..+.++++..+..++.++-+.....+..++.+.. ..+..+..++.+++.+++..|+.++
T Consensus       960 ~l~ep-------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~ 1031 (1233)
T KOG1824|consen  960 VLIEP-------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVL 1031 (1233)
T ss_pred             HhCCh-------HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHH
Confidence            87755       468899999999999999999999998887776666655443 4577888889999999999999999


Q ss_pred             HHhhcCChHHHHHHHHcCchHHHHHHhc
Q 016714          311 GNIVTGDDAQTQFVIDNGVLPCLYQLLT  338 (384)
Q Consensus       311 ~nl~~~~~~~~~~i~~~g~l~~L~~ll~  338 (384)
                      ...+...+..+.     +++|.|+..+.
T Consensus      1032 nSaahNKpslIr-----DllpeLLp~Ly 1054 (1233)
T KOG1824|consen 1032 NSAAHNKPSLIR-----DLLPELLPLLY 1054 (1233)
T ss_pred             HHHHccCHhHHH-----HHHHHHHHHHH
Confidence            999988877655     34455555543

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.10  E-value=0.00015  Score=69.87  Aligned_cols=258  Identities=17%  Similarity=0.207  Sum_probs=162.2

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC--chhH
Q 016714           77 PSMVQGVWSEDPALQLEATTQFRKLLSIER-SPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGT--SEHT  153 (384)
Q Consensus        77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~--~~~~  153 (384)
                      ..++..|++..+.++.+|+..+..++..=+ ...-+.+-..|+  .|.+.|.... |++.--.+.++..|...-  ...+
T Consensus       802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeey-pEvLgsILgAikaI~nvigm~km~  878 (1172)
T KOG0213|consen  802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEY-PEVLGSILGAIKAIVNVIGMTKMT  878 (1172)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCccc-HHHHHHHHHHHHHHHHhccccccC
Confidence            344556778888899998877766543210 111122333443  3677787777 777554444444443310  1111


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch---hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC---RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF  230 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L  230 (384)
                      ..  -.+++|.|.-+|++.+.++++.++..++.||..++++   |+.+.   +--.|+++| ..-+.++++++..++..+
T Consensus       879 pP--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelL-kahkK~iRRaa~nTfG~I  952 (1172)
T KOG0213|consen  879 PP--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELL-KAHKKEIRRAAVNTFGYI  952 (1172)
T ss_pred             CC--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHHHHHHHHHHHhhhhHH
Confidence            11  1378999999999999999999999999999777653   33221   334567777 556788999999999998


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714          231 CRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV  310 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l  310 (384)
                      +..-..      ..++..|+.-|...+-..+....-+|+-.+..+..       ..++|.|+.--..++..++.-.++++
T Consensus       953 akaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen  953 AKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred             HHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHHhHHHHH
Confidence            876311      34556666666666555555555555544433221       13466666666677788888888888


Q ss_pred             HHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          311 GNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       311 ~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      +.+-....+.....+ .-+.|.|-+.|.+. +..-|..|+-++..++-
T Consensus      1020 sf~FeyigemskdYi-yav~PlleDAlmDr-D~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYI-YAVTPLLEDALMDR-DLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred             HHHHHHHHHHhhhHH-HHhhHHHHHhhccc-cHHHHHHHHHHHHHHhc
Confidence            877543222222112 13677788888777 78788888888887775

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=0.00065  Score=64.56  Aligned_cols=240  Identities=15%  Similarity=0.123  Sum_probs=162.7

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL  197 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (384)
                      ++..+++-++.+. +.+|...+.||..+.... +...   ..-+.+.+.+++......-+..+.+.++.+..+...  ..
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~-~~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~  169 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLS-KGLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES  169 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHh-hccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence            5777888888888 899999999997765521 1111   112456777888888888889999999998877642  45


Q ss_pred             HHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC-h
Q 016714          198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP-N  276 (384)
Q Consensus       198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~-~  276 (384)
                      +.+.+++..+...+.+-.+..-++.+..+.-..+..-.......+...+|.+.....+..+.++..+..+.-.+...- .
T Consensus       170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~  249 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA  249 (569)
T ss_pred             hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence            567788888888884333332233344444444443333444455677777777777777888777666655443321 2


Q ss_pred             HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHH
Q 016714          277 DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI  356 (384)
Q Consensus       277 ~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl  356 (384)
                      .....     +++.++.-+.......+..++..+|.++.+.+.+.... -..++|.+.+.|-+. .+++|+.+.-++.++
T Consensus       250 ~aVK~-----llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~-lp~iiP~lsevl~DT-~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  250 YAVKL-----LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC-LPDLIPVLSEVLWDT-KPEVRKAGIETLLKF  322 (569)
T ss_pred             chhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH-HhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            22211     23444444433466778899999999998888776643 357999999999999 999999999999999


Q ss_pred             hc--CCHHHHHHHHhCCc
Q 016714          357 TA--GNRAQIQVHDSFHL  372 (384)
Q Consensus       357 ~~--~~~~~i~~l~~~~~  372 (384)
                      +.  .+++ |+.++...+
T Consensus       323 ~svidN~d-I~~~ip~Ll  339 (569)
T KOG1242|consen  323 GSVIDNPD-IQKIIPTLL  339 (569)
T ss_pred             HHhhccHH-HHHHHHHHH
Confidence            97  5555 777776554

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.09  E-value=7.9e-06  Score=53.30  Aligned_cols=55  Identities=25%  Similarity=0.448  Sum_probs=47.1

Q ss_pred             hhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHH
Q 016714          300 ATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI  356 (384)
Q Consensus       300 ~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl  356 (384)
                      +.++..|+++||+++...+....... ..+++.|..+|.++ ++.||..|+|+|+||
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            46889999999999888877766644 46899999999988 789999999999986

...

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=0.00049  Score=64.48  Aligned_cols=274  Identities=14%  Similarity=0.167  Sum_probs=168.7

Q ss_pred             CHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCChHHHHHHHHHHHH----H
Q 016714           75 SIPSMVQGVW----SEDPALQLEATTQFRKLLSIERSPPIDEVI-KAGVVPRFVEFLGRHDMPQLQFEAAWALTN----V  145 (384)
Q Consensus        75 ~l~~lv~~l~----s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~n----l  145 (384)
                      .++.++..|.    .-++..+...+.-+.-+-+   .|..+.+- -..+++-|..+|+++. ++++..+-.++.+    |
T Consensus       164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds---~P~~~m~~yl~~~ldGLf~~LsD~s-~eVr~~~~t~l~~fL~eI  239 (675)
T KOG0212|consen  164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS---VPDLEMISYLPSLLDGLFNMLSDSS-DEVRTLTDTLLSEFLAEI  239 (675)
T ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc---CCcHHHHhcchHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHH
Confidence            4566666654    4577777777777765543   34444432 2356778889998888 8998777665555    3


Q ss_pred             hcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHH---H
Q 016714          146 ASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLR---N  222 (384)
Q Consensus       146 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~---~  222 (384)
                      .+. |...   --...++.++.-+.++++.++..|+.-+..+..-.+. .-...-.|++..++.++.+.....+..   .
T Consensus       240 ~s~-P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~  314 (675)
T KOG0212|consen  240 RSS-PSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSDTEEMSIKEYAQM  314 (675)
T ss_pred             hcC-cccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCCCccccHHHHHHH
Confidence            332 2211   1234678899999999999999887666665543331 123344566777777773332222222   2


Q ss_pred             HHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhh
Q 016714          223 ATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATV  302 (384)
Q Consensus       223 a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v  302 (384)
                      .-..+..++.............++..+.+.+.++..+.+..++.-+..|-...+... ......+.+.|+..|.++++.+
T Consensus       315 ~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~v  393 (675)
T KOG0212|consen  315 VNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDEV  393 (675)
T ss_pred             HHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhHH
Confidence            222344444432222123336788899999999999999999877777665555443 2345578999999999999999


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHH
Q 016714          303 LIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQ  363 (384)
Q Consensus       303 ~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~  363 (384)
                      ...++..+++||...... ..   -.++..|+.+.... ..-+...+..++..+|. -+++.
T Consensus       394 vl~~L~lla~i~~s~~~~-~~---~~fl~sLL~~f~e~-~~~l~~Rg~lIIRqlC~lL~aE~  450 (675)
T KOG0212|consen  394 VLLALSLLASICSSSNSP-NL---RKFLLSLLEMFKED-TKLLEVRGNLIIRQLCLLLNAER  450 (675)
T ss_pred             HHHHHHHHHHHhcCcccc-cH---HHHHHHHHHHHhhh-hHHHHhhhhHHHHHHHHHhCHHH
Confidence            999999999999765432 00   01222333344333 34444455555555554 34443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=0.00099  Score=65.01  Aligned_cols=65  Identities=18%  Similarity=0.140  Sum_probs=44.2

Q ss_pred             hHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      +..|-++|.+.+..++--|+..|..++..++...+.-     =..++..|+++ +..+|+.|.-.+.-|+-
T Consensus       315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~Dp-D~SIkrralELs~~lvn  379 (866)
T KOG1062|consen  315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDP-DVSIKRRALELSYALVN  379 (866)
T ss_pred             HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCC-cHHHHHHHHHHHHHHhc
Confidence            4555666666666666667777776666555444322     13477889999 89999999888877774

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.00017  Score=69.99  Aligned_cols=264  Identities=18%  Similarity=0.201  Sum_probs=162.0

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .++.+++...++++.++.-|++.+.-+   . -+.   +.+ -+...+...+++.+ +-++..++.+..++-..   ..+
T Consensus        87 avnt~~kD~~d~np~iR~lAlrtm~~l---~-v~~---i~e-y~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~---~~~  154 (734)
T KOG1061|consen   87 AVNTFLKDCEDPNPLIRALALRTMGCL---R-VDK---ITE-YLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDI---DPD  154 (734)
T ss_pred             hhhhhhccCCCCCHHHHHHHhhceeeE---e-ehH---HHH-HHHHHHHHhccCCC-hhHHHHHHHHHHHhhcC---Chh
Confidence            344555555556666665555554322   1 111   111 24667888888888 89999999999888654   455


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~  234 (384)
                      .+...|.++.|-.++.++++.+...|+.+|..|....+..-...+..-.+..++..+    +.-.-+.-+..|-.++...
T Consensus       155 ~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y~  230 (734)
T KOG1061|consen  155 LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL----NECTEWGQIFILDCLAEYV  230 (734)
T ss_pred             hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhcC
Confidence            677889999999999999999999999999999876653111111122233344443    3333344455566666665


Q ss_pred             CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714          235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (384)
                      |... .....++..+...|++.++.+...+...+.++...-.... ...-..+-+.|+.++.+.. .++--+++-+.-+.
T Consensus       231 p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~-~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil  307 (734)
T KOG1061|consen  231 PKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN-ELLFKKVAPPLVTLLSSES-EIQYVALRNINLIL  307 (734)
T ss_pred             CCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH-HHHHHHhcccceeeecccc-hhhHHHHhhHHHHH
Confidence            5444 3345667777788888888888888888888776544422 2233355677777777666 66666666666655


Q ss_pred             cCChHHHHHH-------------H-------------HcCchHHHHHHh---ccCCchhHHHHHHHHHHHHhc
Q 016714          315 TGDDAQTQFV-------------I-------------DNGVLPCLYQLL---TQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       315 ~~~~~~~~~i-------------~-------------~~g~l~~L~~ll---~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ...++....-             +             ++++-+.+.++.   ..- +.+..+++.+++++++.
T Consensus       308 ~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~ai  379 (734)
T KOG1061|consen  308 QKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAI  379 (734)
T ss_pred             HhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhh
Confidence            4444321100             0             111111222222   222 67788899999999997

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.0017  Score=65.33  Aligned_cols=263  Identities=16%  Similarity=0.198  Sum_probs=170.0

Q ss_pred             hhhcCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC
Q 016714           71 KKLESIPSMVQGVW-SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGT  149 (384)
Q Consensus        71 ~~~~~l~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~  149 (384)
                      ..++..+-+...+. ..++.+|.-|+..+..+.+.  .+....+...|++..|+.+|.+.  |..+..++..|..+++. 
T Consensus      1768 ~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S~- 1842 (2235)
T KOG1789|consen 1768 LLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSSN- 1842 (2235)
T ss_pred             hhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhcC-
Confidence            34455666666666 45678899899888866553  68888999999999999999765  68999999999999984 


Q ss_pred             chhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCC---CchhhHHHhc----------CChHHHHHHhcc--
Q 016714          150 SEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDS---PSCRDLVLSS----------GALMPLLAQLNE--  213 (384)
Q Consensus       150 ~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~---~~~~~~i~~~----------g~i~~L~~~l~~--  213 (384)
                      ++..+...+.|++..+..++.. .++..+.+++..|+.+..+.   |..+-.++..          +.-+..+..+..  
T Consensus      1843 ~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~ 1922 (2235)
T KOG1789|consen 1843 GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTS 1922 (2235)
T ss_pred             cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccC
Confidence            7777777888988888887754 67889999999999987543   2222111110          001111222200  


Q ss_pred             --------------------------------------------------------------------------------
Q 016714          214 --------------------------------------------------------------------------------  213 (384)
Q Consensus       214 --------------------------------------------------------------------------------  213 (384)
                                                                                                      
T Consensus      1923 EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~ 2002 (2235)
T KOG1789|consen 1923 ENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLT 2002 (2235)
T ss_pred             CCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHH
Confidence                                                                                            


Q ss_pred             -------------cchhHHHHHHHHHHhhhhcCCCCCChhh-hhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHH
Q 016714          214 -------------HSKLSMLRNATWTLSNFCRGKPPTPFEQ-VKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKI  279 (384)
Q Consensus       214 -------------~~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~  279 (384)
                                   +.......-...++..|.+..|...... .-|.+|.++..+...+..+-..+++.|..|+.+. -+.
T Consensus      2003 ~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~-~C~ 2081 (2235)
T KOG1789|consen 2003 ELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ-FCC 2081 (2235)
T ss_pred             HHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc-HHH
Confidence                         0000111112222223333322222111 1456676666666666666677888888887654 345


Q ss_pred             HHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC-ChHHHHHHHHcCchHHHHHHhccC
Q 016714          280 QAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG-DDAQTQFVIDNGVLPCLYQLLTQN  340 (384)
Q Consensus       280 ~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~-~~~~~~~i~~~g~l~~L~~ll~~~  340 (384)
                      +++.....+..++..+...-. ..-.|+.+|-.+... .++.....++.|++|+|+++|...
T Consensus      2082 ~AMA~l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2082 DAMAQLPCIDGIMKSMKKQPS-LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HHHhccccchhhHHHHHhcch-HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            566666677778877765332 344788888887653 345666778899999999999854

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.0036  Score=55.09  Aligned_cols=278  Identities=15%  Similarity=0.168  Sum_probs=179.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc---HHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPP---IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~---~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      |.+-..|..++..+..-++..+..++..++...   +..+++.|+++.++..+..++ .++-..|...+..|+.. +...
T Consensus        85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialf-paal  162 (524)
T KOG4413|consen   85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALF-PAAL  162 (524)
T ss_pred             HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhc-HHHH
Confidence            444445566777888888888888876542222   334568999999999999888 79999999999999884 7777


Q ss_pred             HHHHhcCChHHH--HHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714          154 RVVIEHGAVPMF--VQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       154 ~~i~~~g~i~~L--~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~  231 (384)
                      ..+.+.+..+.+  ..+-...+.-++-.....+-.+.+-++.....+-..|.+..|..-+....|.-+..++......|.
T Consensus       163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa  242 (524)
T KOG4413|consen  163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA  242 (524)
T ss_pred             HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence            778777766543  333333455566677777778887777777778888888888888855567777778888888887


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccC--CHhHHHHHHHHHHHhccCChH---HHHHHHHc--CChHHHHHhcCCCChhhHH
Q 016714          232 RGKPPTPFEQVKPALPILQRLIHLN--DEEVLTDACWALSYLSDGPND---KIQAVIEA--GVCPRLVELLMHPSATVLI  304 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~--~~~i~~~a~~~l~~l~~~~~~---~~~~~~~~--g~~~~L~~lL~~~~~~v~~  304 (384)
                      .......+....+++..+...+...  +|.-.-.++-..+.+.....-   .-+.+++.  -.++...+....+++..+.
T Consensus       243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaie  322 (524)
T KOG4413|consen  243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIE  322 (524)
T ss_pred             HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHH
Confidence            7544444444477777777777433  343333344444433221100   00111111  1234444555678899999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCc--hHH-HHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          305 PALRTVGNIVTGDDAQTQFVIDNGV--LPC-LYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       305 ~a~~~l~nl~~~~~~~~~~i~~~g~--l~~-L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .|+-++|.+-+ +.+..+.+.+.|-  ... +......+ ...-+..+..+|.+|+.
T Consensus       323 aAiDalGilGS-nteGadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIag  377 (524)
T KOG4413|consen  323 AAIDALGILGS-NTEGADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAG  377 (524)
T ss_pred             HHHHHHHhccC-CcchhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhc
Confidence            99999998876 4445555555442  222 23333333 34445667888888886

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=0.0011  Score=62.99  Aligned_cols=268  Identities=16%  Similarity=0.135  Sum_probs=167.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHH-HHHHHHHHhcCCchhHH
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFE-AAWALTNVASGTSEHTR  154 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~-a~~~L~nl~~~~~~~~~  154 (384)
                      ++.+.+.+.+.....+..+...+..++.   ...+..+.+.+++..+...+.+.. +....+ ++.+....+..-.    
T Consensus       136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~---g~~i~~~~~~~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~Lg----  207 (569)
T KOG1242|consen  136 LELLLELLTSTKIAERAGAAYGLAGLVN---GLGIESLKEFGFLDNLSKAIIDKK-SALNREAALLAFEAAQGNLG----  207 (569)
T ss_pred             HHHHHHHhccccHHHHhhhhHHHHHHHc---CcHHhhhhhhhHHHHHHHHhcccc-hhhcHHHHHHHHHHHHHhcC----
Confidence            4555666666667777778877776653   456677778889999999988766 344443 3333322222111    


Q ss_pred             HHHhcCC---hHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714          155 VVIEHGA---VPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       155 ~i~~~g~---i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~  231 (384)
                      ...+...   +|.++.-..+....+++.|..+.-.+...-+...   .+ -.+++++.-+... .......++..+..+.
T Consensus       208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a---VK-~llpsll~~l~~~-kWrtK~aslellg~m~  282 (569)
T KOG1242|consen  208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA---VK-LLLPSLLGSLLEA-KWRTKMASLELLGAMA  282 (569)
T ss_pred             CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch---hh-HhhhhhHHHHHHH-hhhhHHHHHHHHHHHH
Confidence            1222233   4445555556778888888877776653322110   01 1345555544222 4456678888888888


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC-hHHHHHH----------------------------
Q 016714          232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP-NDKIQAV----------------------------  282 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~-~~~~~~~----------------------------  282 (384)
                      ...|..-......++|.+.+.|..+.++++..+..++..++.-- ...++.+                            
T Consensus       283 ~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV  362 (569)
T KOG1242|consen  283 DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFV  362 (569)
T ss_pred             HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeee
Confidence            77554444445889999999999999999999999888877531 1112221                            


Q ss_pred             --HHcCChHHHHHhc----CCCChhhHHHHHHHHHHhhcCC--hHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHH
Q 016714          283 --IEAGVCPRLVELL----MHPSATVLIPALRTVGNIVTGD--DAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTIS  354 (384)
Q Consensus       283 --~~~g~~~~L~~lL----~~~~~~v~~~a~~~l~nl~~~~--~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~  354 (384)
                        ++.-.+..++.+|    ...+..+...++.+++|++.--  +.....++. .++|.|...+... .|++|..+..+|+
T Consensus       363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~-~PEvR~vaarAL~  440 (569)
T KOG1242|consen  363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDA-VPEVRAVAARALG  440 (569)
T ss_pred             eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCC-ChhHHHHHHHHHH
Confidence              1112233334443    2335566788899999998754  333333333 4777888888888 8999999999998


Q ss_pred             HHhc
Q 016714          355 NITA  358 (384)
Q Consensus       355 nl~~  358 (384)
                      -+..
T Consensus       441 ~l~e  444 (569)
T KOG1242|consen  441 ALLE  444 (569)
T ss_pred             HHHH
Confidence            7775

>PF05536 Neurochondrin: Neurochondrin

Probab=97.98  E-value=0.00063  Score=66.21  Aligned_cols=235  Identities=15%  Similarity=0.101  Sum_probs=161.4

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh---HHHHHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHhh
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH---TRVVIEHGAVPMFVQLLSS-------GSDDVREQAVWALGNV  187 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~---~~~i~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nl  187 (384)
                      .+...+.+|+..+ ..-++.++-.++++..+++..   ++.+.+.=+.+.|-++|.+       +....+.-|+.+|+.+
T Consensus         6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3667788898888 788999999999999876532   3346676667888889987       4467888899999999


Q ss_pred             hCCCCchh-hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHH
Q 016714          188 AGDSPSCR-DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACW  266 (384)
Q Consensus       188 ~~~~~~~~-~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~  266 (384)
                      |.+..-.. ..+.  +-||.|++.+.+..+.++...+..+|..++............+.++.|.+.+.+ .+.....++.
T Consensus        85 ~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~  161 (543)
T PF05536_consen   85 CRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN  161 (543)
T ss_pred             cCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence            98554221 2222  368999999966666689999999999999664434444448999999998877 5556777777


Q ss_pred             HHHHhccCChH-----HHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH-----HHHHHHcCchHHHHHH
Q 016714          267 ALSYLSDGPND-----KIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ-----TQFVIDNGVLPCLYQL  336 (384)
Q Consensus       267 ~l~~l~~~~~~-----~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-----~~~i~~~g~l~~L~~l  336 (384)
                      ++.+++.....     ....+  ..+++.+...+.......+-.++..|+.+....+..     ...-.-..+...+..+
T Consensus       162 lL~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i  239 (543)
T PF05536_consen  162 LLLNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI  239 (543)
T ss_pred             HHHHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence            77776654331     11111  134566666666666667778899999997655311     1111223455567777


Q ss_pred             hccCCchhHHHHHHHHHHHHhc
Q 016714          337 LTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       337 l~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      +.+...+.-|..|....+.+..
T Consensus       240 L~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  240 LQSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHH
Confidence            7776566677777777666664

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.98  E-value=7.3e-05  Score=64.78  Aligned_cols=189  Identities=14%  Similarity=0.054  Sum_probs=117.8

Q ss_pred             cCCCHHHHHHHHHHHHhhhCCC--CchhhHHHhc--CChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhch
Q 016714          170 SSGSDDVREQAVWALGNVAGDS--PSCRDLVLSS--GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPA  245 (384)
Q Consensus       170 ~~~~~~v~~~a~~~L~nl~~~~--~~~~~~i~~~--g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~  245 (384)
                      .+.+-+.+..++.-|..++...  ......+...  ..+..+...+ .+....+...++.++..++..-...-......+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            4567788888888888887544  1122222211  2344555555 555667889999999999987544433445788


Q ss_pred             HHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh---HHHH
Q 016714          246 LPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD---AQTQ  322 (384)
Q Consensus       246 ~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~~  322 (384)
                      +|.|++.+.+....++..|..+|..++.........     .++.+...+.+.++.++..++..+..+....+   ....
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~  170 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ  170 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence            999999999999999999999999998875511111     15677778899999999999999999976544   1111


Q ss_pred             -HHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 016714          323 -FVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ  365 (384)
Q Consensus       323 -~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~  365 (384)
                       ...-..+.+.+...+.++ ++++|+.|--++..+...-++...
T Consensus       171 ~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  171 KSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             ccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhc
Confidence             111134778899999999 999999987777777654334333

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.97  E-value=7.4e-05  Score=54.69  Aligned_cols=69  Identities=16%  Similarity=0.246  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 016714          302 VLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-KKSIKKEACWTISNITAGNRAQIQVHDSF  370 (384)
Q Consensus       302 v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~i~~l~~~  370 (384)
                      ++...+++|||++..++...+.+.+.|+++.++......+ +|.+|+.|.|++.|++.++++..+.+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            4667899999999999999999999999999998866432 79999999999999999988876665543

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=8e-05  Score=72.16  Aligned_cols=71  Identities=20%  Similarity=0.284  Sum_probs=60.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      ...+.+.++++++-++..++.+.+++-    ..+.+.+.+.|+++.|-.++.+++ |.+...|+.+|..|...++.
T Consensus       123 ~~Pl~~~l~d~~~yvRktaa~~vakl~----~~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~  193 (734)
T KOG1061|consen  123 CDPLLKCLKDDDPYVRKTAAVCVAKLF----DIDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPS  193 (734)
T ss_pred             HHHHHHhccCCChhHHHHHHHHHHHhh----cCChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCC
Confidence            466777888999999999999999884    456677889999999999999777 99999999999999886543

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.96  E-value=0.0016  Score=62.00  Aligned_cols=232  Identities=15%  Similarity=0.110  Sum_probs=154.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-----CChHHHHHHHHHHHHHhcCCchhHHHHHh
Q 016714           84 WSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRH-----DMPQLQFEAAWALTNVASGTSEHTRVVIE  158 (384)
Q Consensus        84 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~~~~~~a~~~L~nl~~~~~~~~~~i~~  158 (384)
                      ...++.+..+|+++|.|++..+ ...++.+.+.|..+.+++.|+..     + .++.+...++|.-++...++.+..+++
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~  119 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE  119 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence            3567889999999999999865 55566788999999999999876     4 799999999999999888888877776


Q ss_pred             c-CChHHHHHhhcC-----------------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhccc------
Q 016714          159 H-GAVPMFVQLLSS-----------------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEH------  214 (384)
Q Consensus       159 ~-g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~------  214 (384)
                      . +++..++..|..                 .+......++.++.|+..+.+.... -...+.++.++..+...      
T Consensus       120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~  198 (446)
T PF10165_consen  120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPS  198 (446)
T ss_pred             HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCC
Confidence            4 777777776632                 1455677888999999876654322 01223445555444221      


Q ss_pred             --chhHHHHHHHHHHhhhhcCCC---------CCC---hhhhhchHHHHHHhhc----cC----CHhHHHHHHHHHHHhc
Q 016714          215 --SKLSMLRNATWTLSNFCRGKP---------PTP---FEQVKPALPILQRLIH----LN----DEEVLTDACWALSYLS  272 (384)
Q Consensus       215 --~~~~~~~~a~~~L~~L~~~~~---------~~~---~~~~~~~~~~L~~lL~----~~----~~~i~~~a~~~l~~l~  272 (384)
                        +......++..+|.|+--...         ...   .......+..|+.+|.    ..    -.+.....+.+|..++
T Consensus       199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~  278 (446)
T PF10165_consen  199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA  278 (446)
T ss_pred             CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence              234567788888887721110         000   0011233444444442    22    2467888888999988


Q ss_pred             cCChHHHHHHHH----------------cCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 016714          273 DGPNDKIQAVIE----------------AGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD  318 (384)
Q Consensus       273 ~~~~~~~~~~~~----------------~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  318 (384)
                      .........+..                ..+-..|++++.+..+.++..+...+-.+|..+.
T Consensus       279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~  340 (446)
T PF10165_consen  279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA  340 (446)
T ss_pred             HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence            876544443321                2456778888888888888888888888875443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.91  E-value=3.2e-05  Score=46.85  Aligned_cols=39  Identities=36%  Similarity=0.754  Sum_probs=36.1

Q ss_pred             chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhh
Q 016714          150 SEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA  188 (384)
Q Consensus       150 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  188 (384)
                      ++.+..+++.|+++.|+.++.+++++++..++|+|+||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            457788999999999999999999999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.0094  Score=54.61  Aligned_cols=229  Identities=13%  Similarity=0.153  Sum_probs=158.2

Q ss_pred             CCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC---------chhHHHHHhcCChHHHHHhhcCCCHH--
Q 016714          107 SPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGT---------SEHTRVVIEHGAVPMFVQLLSSGSDD--  175 (384)
Q Consensus       107 ~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~---------~~~~~~i~~~g~i~~L~~lL~~~~~~--  175 (384)
                      ++-...+++.++++.|+.+|.+.+ .++.......|..++..+         ..-...+++.++++.|++-+..-++.  
T Consensus       115 PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk  193 (536)
T KOG2734|consen  115 PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK  193 (536)
T ss_pred             hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence            444557889999999999999998 899999999998887632         13446677888999999888653333  


Q ss_pred             ----HHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhccc-chhHHHHHHHHHHhhhhcCCCCCChhh-hhchHHHH
Q 016714          176 ----VREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEH-SKLSMLRNATWTLSNFCRGKPPTPFEQ-VKPALPIL  249 (384)
Q Consensus       176 ----v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~L  249 (384)
                          -...++..+-|+..-.+.+...+.+.|.+..|+..+... .-..-..++.-.|+-+........... --.++..+
T Consensus       194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l  273 (536)
T KOG2734|consen  194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL  273 (536)
T ss_pred             hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence                345567788898888888888888888888888866333 333455667777777776653222211 13445555


Q ss_pred             HHhhc----c-----CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh--
Q 016714          250 QRLIH----L-----NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD--  318 (384)
Q Consensus       250 ~~lL~----~-----~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~--  318 (384)
                      ++-+.    +     +..+...+...+|+.+....... ..+....++....-.+.. ....+..++++|-.+..+.+  
T Consensus       274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt  351 (536)
T KOG2734|consen  274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT  351 (536)
T ss_pred             HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch
Confidence            44441    1     13467788888888877665544 455666566655555554 55667889999999998876  


Q ss_pred             HHHHHHHHcCchHHHHHHhc
Q 016714          319 AQTQFVIDNGVLPCLYQLLT  338 (384)
Q Consensus       319 ~~~~~i~~~g~l~~L~~ll~  338 (384)
                      .....+++.+++..+..+.-
T Consensus       352 ~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  352 PNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHHHHHHHhHHHHHHHHh
Confidence            66677788777777666655

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.83  E-value=5.6e-05  Score=45.73  Aligned_cols=39  Identities=41%  Similarity=0.729  Sum_probs=35.0

Q ss_pred             HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          319 AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       319 ~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      +....+++.|+++.|++++.++ ++.+++.|+|+|+|++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence            4667788999999999999987 89999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=0.006  Score=55.83  Aligned_cols=241  Identities=15%  Similarity=0.150  Sum_probs=168.9

Q ss_pred             hhcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC----CCCc----HHHHHHcCCHHHHHHhhcCCCChH------HHHH
Q 016714           72 KLESIPSMVQGVWSEDPALQLEATTQFRKLLSIE----RSPP----IDEVIKAGVVPRFVEFLGRHDMPQ------LQFE  137 (384)
Q Consensus        72 ~~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~----~~~~----~~~~~~~g~i~~Lv~lL~~~~~~~------~~~~  137 (384)
                      .+++++.++.+|.++|.++-...+..+..+...+    ..+.    ++.+++.++++.|++-+..-+ ..      -...
T Consensus       123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLd-Esvkeea~gv~~  201 (536)
T KOG2734|consen  123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLD-ESVKEEADGVHN  201 (536)
T ss_pred             HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhh-hcchhhhhhhHH
Confidence            3578899999999999998888888888876532    1222    556778899999999887543 33      3455


Q ss_pred             HHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc--
Q 016714          138 AAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE--  213 (384)
Q Consensus       138 a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~--  213 (384)
                      +..++-|+..-.++....+++.|.+.-|+.-+..  +-..-...|..+|+-+..++...+..+....++..+++.+.-  
T Consensus       202 ~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk  281 (536)
T KOG2734|consen  202 TLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYK  281 (536)
T ss_pred             HHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhh
Confidence            6778888888888888888888888777774443  445677888899998888888788888888999999988841  


Q ss_pred             --c----chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh--HHHHHHHHc
Q 016714          214 --H----SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN--DKIQAVIEA  285 (384)
Q Consensus       214 --~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~--~~~~~~~~~  285 (384)
                        +    ...+...+..-+|+.+.....+...-....++....-++.. ....+..++..|-+...+++  .....+++.
T Consensus       282 ~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~  360 (536)
T KOG2734|consen  282 RHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEI  360 (536)
T ss_pred             ccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence              1    13457777777777777664333333335556655545544 45567788888988888766  666677888


Q ss_pred             CChHHHHHhcC-CCC---------hhhHHHHHHHHHHhh
Q 016714          286 GVCPRLVELLM-HPS---------ATVLIPALRTVGNIV  314 (384)
Q Consensus       286 g~~~~L~~lL~-~~~---------~~v~~~a~~~l~nl~  314 (384)
                      +++..+..+.. .+.         ...-+..+.+|+.+.
T Consensus       361 lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~  399 (536)
T KOG2734|consen  361 LGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLL  399 (536)
T ss_pred             HhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHH
Confidence            77777776653 221         233455666666654

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.0067  Score=53.49  Aligned_cols=293  Identities=13%  Similarity=0.129  Sum_probs=185.7

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHH--HHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRF--VEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L--v~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      +.++.++..+-.+|.++-..|...+..+...  ......++++.....+  ..+--..+ .-.+......+..|.+-+++
T Consensus       128 eilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpe  204 (524)
T KOG4413|consen  128 EILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPE  204 (524)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHH
Confidence            4567788888888888888888888877553  4445556666655433  33333334 46777788888899988899


Q ss_pred             hHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc-hhH-HHHH---HHH
Q 016714          152 HTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS-KLS-MLRN---ATW  225 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~-~~~-~~~~---a~~  225 (384)
                      .....-..|.+..|..-|.. .+.-++..++.....++.... .++.+.+.|.|+.+.+.+...+ ++- -.+.   ...
T Consensus       205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk  283 (524)
T KOG4413|consen  205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK  283 (524)
T ss_pred             HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence            99999999999999888877 677788888888888875432 4677888889999988884322 221 1111   122


Q ss_pred             HHhhhhcCC--CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCC--hHHHHHhcCCC-Ch
Q 016714          226 TLSNFCRGK--PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGV--CPRLVELLMHP-SA  300 (384)
Q Consensus       226 ~L~~L~~~~--~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~--~~~L~~lL~~~-~~  300 (384)
                      .+++..-.+  +.......--.+.....++..+|++.+..|..+++.+-.... ..+.+.+.|-  ...++.-..+. ..
T Consensus       284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte-GadlllkTgppaaehllarafdqnah  362 (524)
T KOG4413|consen  284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQNAH  362 (524)
T ss_pred             HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhccccc
Confidence            233333322  111111112233444566778899999999999998876544 3445555553  33444333333 33


Q ss_pred             hhHHHHHHHHHHhhcCC---hHH----------HHHHHHc-------CchHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 016714          301 TVLIPALRTVGNIVTGD---DAQ----------TQFVIDN-------GVLPCLYQLLTQNHKKSIKKEACWTISNITAGN  360 (384)
Q Consensus       301 ~v~~~a~~~l~nl~~~~---~~~----------~~~i~~~-------g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~  360 (384)
                      .-+..++++|.+|+...   +++          +..+++.       .-+..+..+++.+ .++++-.+..++..+++..
T Consensus       363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqP  441 (524)
T KOG4413|consen  363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQP  441 (524)
T ss_pred             chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCc
Confidence            44677889999987431   111          1122221       3456677888887 8999999988888888755


Q ss_pred             HHHHHHHHhCCc
Q 016714          361 RAQIQVHDSFHL  372 (384)
Q Consensus       361 ~~~i~~l~~~~~  372 (384)
                      -.+...+-+.|+
T Consensus       442 Walkeifakeef  453 (524)
T KOG4413|consen  442 WALKEIFAKEEF  453 (524)
T ss_pred             HHHHHHhcCccc
Confidence            444444434444

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.79  E-value=0.0014  Score=57.41  Aligned_cols=229  Identities=14%  Similarity=0.100  Sum_probs=149.5

Q ss_pred             HhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-HcCCHHHHHHhhcC--CCChHHHHHHHHHHHHHhcCCchhHHHHHh
Q 016714           82 GVWSEDPALQLEATTQFRKLLSIERSPPIDEVI-KAGVVPRFVEFLGR--HDMPQLQFEAAWALTNVASGTSEHTRVVIE  158 (384)
Q Consensus        82 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~Lv~lL~~--~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~  158 (384)
                      .+++=++-.++.|++++.++...  .+.+.... +...-..+++++++  ++ .++|..++.++.-++.. +++.+.+-+
T Consensus       157 l~Q~i~~lTrlfav~cl~~l~~~--~e~R~i~waentcs~r~~e~l~n~vg~-~qlQY~SL~~iw~lTf~-~~~aqdi~K  232 (432)
T COG5231         157 LSQLIDFLTRLFAVSCLSNLEFD--VEKRKIEWAENTCSRRFMEILQNYVGV-KQLQYNSLIIIWILTFS-KECAQDIDK  232 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHhhHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHhcC-HHHHHHHHH
Confidence            33444556777888888877653  33343333 44556678888876  34 78999999999998884 666644433


Q ss_pred             -cCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCc--hhhHHHhcCChHHHHHHhcc--cchhHHHHHHHHHHh----
Q 016714          159 -HGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPS--CRDLVLSSGALMPLLAQLNE--HSKLSMLRNATWTLS----  228 (384)
Q Consensus       159 -~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~--~~~~i~~~g~i~~L~~~l~~--~~~~~~~~~a~~~L~----  228 (384)
                       ...+.-|+++.+. ..+.+...|+..+.|++...|.  ....+ -.|-+.+-++.|..  ..|+++....-..=+    
T Consensus       233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~l-ll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~  311 (432)
T COG5231         233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPL-LLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ  311 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhH-hhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence             2456667777765 3567888899999999874431  22222 23445556666632  234444332221111    


Q ss_pred             ------------------hhhcCCCCCChh--------h---hhchHHHHHHhhccCCHh-HHHHHHHHHHHhccCChHH
Q 016714          229 ------------------NFCRGKPPTPFE--------Q---VKPALPILQRLIHLNDEE-VLTDACWALSYLSDGPNDK  278 (384)
Q Consensus       229 ------------------~L~~~~~~~~~~--------~---~~~~~~~L~~lL~~~~~~-i~~~a~~~l~~l~~~~~~~  278 (384)
                                        .|+..++.....        .   ...++..|.++++++++. ...-||.-|..+....++.
T Consensus       312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~  391 (432)
T COG5231         312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI  391 (432)
T ss_pred             hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH
Confidence                              122221111110        1   145677888889887766 5666788888888888888


Q ss_pred             HHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714          279 IQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT  315 (384)
Q Consensus       279 ~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (384)
                      ...+.+.|+-+.++.++.|+++.++-.|+.++.-+.+
T Consensus       392 ~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         392 NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            8888999999999999999999999999998877654

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.79  E-value=0.00011  Score=53.76  Aligned_cols=68  Identities=18%  Similarity=0.339  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHhhhCCCCchhhHHHhc
Q 016714          134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS--SGSDDVREQAVWALGNVAGDSPSCRDLVLSS  201 (384)
Q Consensus       134 ~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~  201 (384)
                      ++.....+|+|++..++...+.+.+.|++|.++..-.  ..+|-+++.|+|++.|++.+++++++.+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            4567889999999999999999999999999998653  5789999999999999999999888776653

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.75  E-value=0.0042  Score=53.07  Aligned_cols=198  Identities=18%  Similarity=0.231  Sum_probs=129.7

Q ss_pred             cCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch
Q 016714          116 AGVVPRFVEFLGRHD-MPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC  194 (384)
Q Consensus       116 ~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  194 (384)
                      ...+|.++..|...+ .|-++.+|+.+|+.+..           ....+.+-++.+++...+++.|..++..+-..+..-
T Consensus        66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~  134 (289)
T KOG0567|consen   66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID  134 (289)
T ss_pred             chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence            347899999887643 37889999999999873           245677777777777888888888877763211000


Q ss_pred             h-------hHH-----HhcCChHHHHHHhcccchhHHH-HHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHH
Q 016714          195 R-------DLV-----LSSGALMPLLAQLNEHSKLSML-RNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVL  261 (384)
Q Consensus       195 ~-------~~i-----~~~g~i~~L~~~l~~~~~~~~~-~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~  261 (384)
                      .       ..+     ...+.+..+-..|.+.+.+.+. ..+.+.|.|+-..          ..+-.|..-+..++.-++
T Consensus       135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~~Salfr  204 (289)
T KOG0567|consen  135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------EAINALIDGLADDSALFR  204 (289)
T ss_pred             cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------HHHHHHHHhcccchHHHH
Confidence            0       000     0111233444444333333332 3455555555432          456667777777888899


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhcc
Q 016714          262 TDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM--HPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQ  339 (384)
Q Consensus       262 ~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~  339 (384)
                      ..+..+++.|-..           -.++.|.+.|.  ..++.++..|+.+||.|+.  +         ..++.|...+.+
T Consensus       205 hEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e---------~~~~vL~e~~~D  262 (289)
T KOG0567|consen  205 HEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--E---------DCVEVLKEYLGD  262 (289)
T ss_pred             HHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--H---------HHHHHHHHHcCC
Confidence            9999999987432           34677777774  4578999999999999974  2         245667778888


Q ss_pred             CCchhHHHHHHHHHHHHh
Q 016714          340 NHKKSIKKEACWTISNIT  357 (384)
Q Consensus       340 ~~~~~v~~~a~~~L~nl~  357 (384)
                      . ++-|++.+..+|.-+-
T Consensus       263 ~-~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  263 E-ERVVRESCEVALDMLE  279 (289)
T ss_pred             c-HHHHHHHHHHHHHHHH
Confidence            7 7888888877776554

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.007  Score=58.53  Aligned_cols=266  Identities=17%  Similarity=0.187  Sum_probs=139.3

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      +.-+-+++|.++-.....-+--.+.-++..+ .+-.+.     ++..+..=|.+.+ +.....|+.+++|+.+  -+..+
T Consensus        75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~e  145 (938)
T KOG1077|consen   75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAE  145 (938)
T ss_pred             chHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHH
Confidence            3455677777776555555555555443322 222222     2444555555666 7889999999999976  45555


Q ss_pred             HHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          155 VVIEHGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                      .+..  =|+   ++|.+  ..+-++..|+.+|..|...+|..   +-..+-...++.+| ++.+..+..++...+.-|+.
T Consensus       146 a~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk  216 (938)
T KOG1077|consen  146 AFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVK  216 (938)
T ss_pred             Hhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHh-CccccceeeehHHHHHHHHH
Confidence            5443  133   55554  34678888999999998777642   22233455666666 33334333333333333333


Q ss_pred             CCCCCC----------------------hhhh-----hchHH-HHHHhhc----cCCHhHHHHHHHH---HHHhccCChH
Q 016714          233 GKPPTP----------------------FEQV-----KPALP-ILQRLIH----LNDEEVLTDACWA---LSYLSDGPND  277 (384)
Q Consensus       233 ~~~~~~----------------------~~~~-----~~~~~-~L~~lL~----~~~~~i~~~a~~~---l~~l~~~~~~  277 (384)
                      ..|..-                      .+..     .+.+. .++.+|+    ..|+..+.....+   |.+.+..++.
T Consensus       217 ~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~  296 (938)
T KOG1077|consen  217 KNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPK  296 (938)
T ss_pred             cCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCcc
Confidence            322111                      1111     11111 1222221    1222222222222   2222221100


Q ss_pred             --------------------------HHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchH
Q 016714          278 --------------------------KIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLP  331 (384)
Q Consensus       278 --------------------------~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~  331 (384)
                                                .-+.+  ...+..|-.+|.+....++-.|+..++.+++....+ +.+-.+  .+
T Consensus       297 ~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~-davK~h--~d  371 (938)
T KOG1077|consen  297 SKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSI-DAVKKH--QD  371 (938)
T ss_pred             ccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcccccchhhhHHHHHHHHhccchH-HHHHHH--HH
Confidence                                      00001  123455555666666667777777777777654332 233333  67


Q ss_pred             HHHHHhccCCchhHHHHHHHHHHHHhc-CCHHH
Q 016714          332 CLYQLLTQNHKKSIKKEACWTISNITA-GNRAQ  363 (384)
Q Consensus       332 ~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~  363 (384)
                      .++..|....|..+|+.|+-.|.-+|- ++..+
T Consensus       372 ~Ii~sLkterDvSirrravDLLY~mcD~~Nak~  404 (938)
T KOG1077|consen  372 TIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ  404 (938)
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHhchhhHHH
Confidence            788888855589999999999999996 45444

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=0.0016  Score=62.33  Aligned_cols=194  Identities=16%  Similarity=0.148  Sum_probs=122.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHH---HHHHhhhhcCC---CC
Q 016714          163 PMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNA---TWTLSNFCRGK---PP  236 (384)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a---~~~L~~L~~~~---~~  236 (384)
                      ..|+.+..+.+..++.+|+.+|..+..... ....     .....++++ .+.+..++..|   +|..+|.+-..   ..
T Consensus       201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~  273 (823)
T KOG2259|consen  201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERES  273 (823)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence            336666666777777777777666654222 2111     233455566 56666676666   44555555221   11


Q ss_pred             CChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHH------------------------------------
Q 016714          237 TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQ------------------------------------  280 (384)
Q Consensus       237 ~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~------------------------------------  280 (384)
                      ........++..+...+..-+..++..|..+|+.+-.-+++.+.                                    
T Consensus       274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~  353 (823)
T KOG2259|consen  274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW  353 (823)
T ss_pred             hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence            11222244555566666666666777777666665543333222                                    


Q ss_pred             --------------HHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHH
Q 016714          281 --------------AVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIK  346 (384)
Q Consensus       281 --------------~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~  346 (384)
                                    .++.+|....++.-|.++-.+|+..|...++.++...+....     ..++.|++++++. ...+|
T Consensus       354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE-~~~VR  427 (823)
T KOG2259|consen  354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE-IEVVR  427 (823)
T ss_pred             cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH-HHHHH
Confidence                          234556667777777777778999999999999988776544     3577899999888 88899


Q ss_pred             HHHHHHHHHHhc---CCHHHHHHHHh
Q 016714          347 KEACWTISNITA---GNRAQIQVHDS  369 (384)
Q Consensus       347 ~~a~~~L~nl~~---~~~~~i~~l~~  369 (384)
                      ..|..+|..|+.   -..+|...+.+
T Consensus       428 L~ai~aL~~Is~~l~i~eeql~~il~  453 (823)
T KOG2259|consen  428 LKAIFALTMISVHLAIREEQLRQILE  453 (823)
T ss_pred             HHHHHHHHHHHHHheecHHHHHHHHH
Confidence            999999988886   36666666554

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=0.00041  Score=66.18  Aligned_cols=233  Identities=17%  Similarity=0.095  Sum_probs=141.1

Q ss_pred             CHHHHHHhhcCCCChHHHHHH---HHHHHHHh--cCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC
Q 016714          118 VVPRFVEFLGRHDMPQLQFEA---AWALTNVA--SGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP  192 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a---~~~L~nl~--~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~  192 (384)
                      .....++.+++++ .+++..|   .|.++|..  ....+..+.-....++..++..+.+-+..++..|+.+||.+-.-+.
T Consensus       235 ~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe  313 (823)
T KOG2259|consen  235 CYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE  313 (823)
T ss_pred             HHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH
Confidence            4667888888887 8898887   55666665  2112222222223578889999999999999999999998854443


Q ss_pred             chhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh--hcCC----CCCChh--------hhhchHHHHHHhhccCCH
Q 016714          193 SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF--CRGK----PPTPFE--------QVKPALPILQRLIHLNDE  258 (384)
Q Consensus       193 ~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L--~~~~----~~~~~~--------~~~~~~~~L~~lL~~~~~  258 (384)
                      ++-...+..    .++.-+....  ..-+..-...++-  ++++    ..+..+        .-.|.--+++.-|...=.
T Consensus       314 e~i~QTLdK----Klms~lRRkr--~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~  387 (823)
T KOG2259|consen  314 EIIQQTLDK----KLMSRLRRKR--TAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFY  387 (823)
T ss_pred             HHHHHHHHH----HHhhhhhhhh--hcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHH
Confidence            321111111    1222111000  0000011111111  1211    111111        114555566777766667


Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhc
Q 016714          259 EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLT  338 (384)
Q Consensus       259 ~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~  338 (384)
                      +++..|...++.|+...+....     ..+..|+..++++...++..|+.+|..|+..      ..++...++.+...|.
T Consensus       388 EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~  456 (823)
T KOG2259|consen  388 EVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLE  456 (823)
T ss_pred             HHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHH
Confidence            8999999999999987765433     3478999999999899999999999988753      2334445666777777


Q ss_pred             cCCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Q 016714          339 QNHKKSIKKEACWTISNITAGNRAQIQVHDS  369 (384)
Q Consensus       339 ~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~  369 (384)
                      +. +.++|++.--.|.+.--.+.+.+..++.
T Consensus       457 D~-s~dvRe~l~elL~~~~~~d~~~i~m~v~  486 (823)
T KOG2259|consen  457 DR-SVDVREALRELLKNARVSDLECIDMCVA  486 (823)
T ss_pred             hc-CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            77 7777777666666655556665555544

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.67  E-value=0.0014  Score=62.27  Aligned_cols=208  Identities=15%  Similarity=0.180  Sum_probs=127.9

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCC----CCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH---HHH
Q 016714           84 WSEDPALQLEATTQFRKLLSIER----SPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT---RVV  156 (384)
Q Consensus        84 ~s~~~~~~~~a~~~l~~l~s~~~----~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~---~~i  156 (384)
                      ....+++.-..+.++..+.+..+    .|++     .|++|.|..+|.+.. ..++......++.|+...++..   +.+
T Consensus       656 ge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi-----~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi~~rEWM  729 (975)
T COG5181         656 GEDYPEVLGSILKAICSIYSVHRFRSMQPPI-----SGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYIGVREWM  729 (975)
T ss_pred             CcccHHHHHHHHHHHHHHhhhhcccccCCch-----hhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccCCHHHHH
Confidence            34556665555555555544321    2333     478999999999888 8999999999999998766622   222


Q ss_pred             HhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714          157 IEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP  236 (384)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~  236 (384)
                      .   +--.|+..|.+-+.+++..|...+|-|+.-       +-.+.++..|++-| ...+...+....-+++-.+...  
T Consensus       730 R---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~a-------iGPqdvL~~LlnnL-kvqeRq~RvctsvaI~iVae~c--  796 (975)
T COG5181         730 R---ICFELVDSLKSWNKEIRRNATETFGCISRA-------IGPQDVLDILLNNL-KVQERQQRVCTSVAISIVAEYC--  796 (975)
T ss_pred             H---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhh-------cCHHHHHHHHHhcc-hHHHHHhhhhhhhhhhhhHhhc--
Confidence            1   334578888889999999999999998732       11122344455544 2222222222222233222221  


Q ss_pred             CChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHH-HHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714          237 TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDK-IQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT  315 (384)
Q Consensus       237 ~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~-~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (384)
                          ....++|.|..=-.+++..++.-++.+++.+...-.+. .+.+  ..+.|.|-..|.+.++..+..|...|..++-
T Consensus       797 ----gpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~L  870 (975)
T COG5181         797 ----GPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVL  870 (975)
T ss_pred             ----CchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence                01356677766666777888888888888776542211 1111  2346777777778888777778877777764


Q ss_pred             C
Q 016714          316 G  316 (384)
Q Consensus       316 ~  316 (384)
                      +
T Consensus       871 n  871 (975)
T COG5181         871 N  871 (975)
T ss_pred             C
Confidence            4

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.0064  Score=57.31  Aligned_cols=266  Identities=11%  Similarity=0.129  Sum_probs=156.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      ++-+..+|.++..+++..+-.++..++..=++.+.- +--...++.++.-+.+++ +.+|..|+..+..+..-.+... .
T Consensus       210 ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s-~d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~i~g~~~-l  286 (675)
T KOG0212|consen  210 LDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS-MDYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVKIPGRDL-L  286 (675)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc-cCcccchhhccccccCCc-HHHHHHHHHHHHHHhcCCCcch-h
Confidence            455566667777777765555454444211111110 011246888899898888 9999998777777665322221 2


Q ss_pred             HHhcCChHHHHHhhcCCCH-HHHHHHHHH---HHhhhCCCCchhhHHHhcC-ChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714          156 VIEHGAVPMFVQLLSSGSD-DVREQAVWA---LGNVAGDSPSCRDLVLSSG-ALMPLLAQLNEHSKLSMLRNATWTLSNF  230 (384)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~-~v~~~a~~~---L~nl~~~~~~~~~~i~~~g-~i~~L~~~l~~~~~~~~~~~a~~~L~~L  230 (384)
                      ..-.|++..++.++.+..+ .+++.+...   |..+++....-.+  ++.| +++.+...+ .+...+.+..++.-+..|
T Consensus       287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~--id~~~ii~vl~~~l-~~~~~~tri~~L~Wi~~l  363 (675)
T KOG0212|consen  287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE--IDYGSIIEVLTKYL-SDDREETRIAVLNWIILL  363 (675)
T ss_pred             hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc--cchHHHHHHHHHHh-hcchHHHHHHHHHHHHHH
Confidence            2224667777777776554 355544332   3333332211111  2322 466667777 566666666666555556


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHh---cCCCChhhHHHHH
Q 016714          231 CRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVEL---LMHPSATVLIPAL  307 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~l---L~~~~~~v~~~a~  307 (384)
                      -...|..-......+++.|++-|..++.++...++..++.+|......       +..+.+..+   ...+..-+...+-
T Consensus       364 ~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~-------~~~~fl~sLL~~f~e~~~~l~~Rg~  436 (675)
T KOG0212|consen  364 YHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP-------NLRKFLLSLLEMFKEDTKLLEVRGN  436 (675)
T ss_pred             HhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc-------cHHHHHHHHHHHHhhhhHHHHhhhh
Confidence            655566666666899999999999999999999999999999875532       224444444   4444444555666


Q ss_pred             HHHHHhhcC-ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 016714          308 RTVGNIVTG-DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRA  362 (384)
Q Consensus       308 ~~l~nl~~~-~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  362 (384)
                      .++..+|.- +++.        +...+..+|...++-+..+.-+.+|.++.-.+++
T Consensus       437 lIIRqlC~lL~aE~--------IYr~~a~ILe~e~nl~FAstMV~~Ln~iLlTStE  484 (675)
T KOG0212|consen  437 LIIRQLCLLLNAER--------IYRSIADILEREENLKFASTMVQALNTILLTSTE  484 (675)
T ss_pred             HHHHHHHHHhCHHH--------HHHHHHHHHhccccchHHHHHHHHHHhhhcccHH
Confidence            666666642 2222        3334555555554555556666666665554444

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.64  E-value=0.018  Score=57.22  Aligned_cols=104  Identities=13%  Similarity=0.186  Sum_probs=65.3

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      +++.+.+.++++|+.+|-.|++.+..+ .   .+   .++ ..+++.+.+++.+++ +.+|..|+.|+.++-.-   ...
T Consensus        93 avNti~kDl~d~N~~iR~~AlR~ls~l-~---~~---el~-~~~~~~ik~~l~d~~-ayVRk~Aalav~kly~l---d~~  160 (757)
T COG5096          93 AVNTIQKDLQDPNEEIRGFALRTLSLL-R---VK---ELL-GNIIDPIKKLLTDPH-AYVRKTAALAVAKLYRL---DKD  160 (757)
T ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHhc-C---hH---HHH-HHHHHHHHHHccCCc-HHHHHHHHHHHHHHHhc---CHh
Confidence            455666666667777777666666543 1   11   111 124667777777777 77777777777777532   234


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCC
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGD  190 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~  190 (384)
                      .+.+.|.+..+..++.++++.+...|+.+|..+..+
T Consensus       161 l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         161 LYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            455666777777777777777777777777776543

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.54  E-value=0.016  Score=49.58  Aligned_cols=214  Identities=18%  Similarity=0.234  Sum_probs=131.1

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 016714           87 DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFV  166 (384)
Q Consensus        87 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~  166 (384)
                      ...-+..|+..|+++.+..            .+..+.+...++. ..++.+.+++|+....           ..++|.|+
T Consensus        18 ~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l~   73 (289)
T KOG0567|consen   18 PLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVLV   73 (289)
T ss_pred             HHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHHH
Confidence            3566777888888776532            2555555555554 6778888999987654           36799999


Q ss_pred             HhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC-C-----C
Q 016714          167 QLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP-T-----P  238 (384)
Q Consensus       167 ~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~-~-----~  238 (384)
                      ..|..  ..+-++..|..+|+++. +..          ..+.+-+.. +++...+...+..++..+-+.... .     .
T Consensus        74 ~vl~desq~pmvRhEAaealga~~-~~~----------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p  141 (289)
T KOG0567|consen   74 EVLLDESQEPMVRHEAAEALGAIG-DPE----------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSP  141 (289)
T ss_pred             HHhcccccchHHHHHHHHHHHhhc-chh----------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCc
Confidence            98875  56788999999999986 221          233444444 555556666555555555443200 0     0


Q ss_pred             hh-------hhhchHHHHHH-hhccCCHhH-HHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHH
Q 016714          239 FE-------QVKPALPILQR-LIHLNDEEV-LTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT  309 (384)
Q Consensus       239 ~~-------~~~~~~~~L~~-lL~~~~~~i-~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~  309 (384)
                      +.       ....-+.-+-. ++..+.+.+ +..+...|.++  +.++.         +..|++-|..++.-.+..+..+
T Consensus       142 ~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~--g~Eea---------I~al~~~l~~~SalfrhEvAfV  210 (289)
T KOG0567|consen  142 YISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI--GTEEA---------INALIDGLADDSALFRHEVAFV  210 (289)
T ss_pred             cccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc--CcHHH---------HHHHHHhcccchHHHHHHHHHH
Confidence            11       11122333332 333333333 33344444443  12222         4556667777888899999999


Q ss_pred             HHHhhcCChHHHHHHHHcCchHHHHHHhccC-CchhHHHHHHHHHHHHhc
Q 016714          310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN-HKKSIKKEACWTISNITA  358 (384)
Q Consensus       310 l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~  358 (384)
                      +|.+-+-           -.++.|.+.|... +.+.+|.+|+.+|+.|+.
T Consensus       211 fGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~  249 (289)
T KOG0567|consen  211 FGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD  249 (289)
T ss_pred             Hhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC
Confidence            9998642           2455666666543 368999999999999984

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.52  E-value=0.061  Score=49.01  Aligned_cols=241  Identities=12%  Similarity=0.131  Sum_probs=155.5

Q ss_pred             HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH-----HHHhc--CChHHHHHhhcCCCHHHHHHHHHHH
Q 016714          112 EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR-----VVIEH--GAVPMFVQLLSSGSDDVREQAVWAL  184 (384)
Q Consensus       112 ~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~-----~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L  184 (384)
                      .+...|+++.|+..|..-+ -+.+..++.+++++.......+.     .+...  .++..|+....  ++++.-.+...|
T Consensus        71 Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ml  147 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDML  147 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHH
Confidence            4566789999999998887 78999999999998876544432     33322  23333333333  456666666667


Q ss_pred             HhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh----hchHHHHHHhhccCCHhH
Q 016714          185 GNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV----KPALPILQRLIHLNDEEV  260 (384)
Q Consensus       185 ~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~----~~~~~~L~~lL~~~~~~i  260 (384)
                      ...+.+.. +...++....+..+.+.+ ..++-++...|..++..+-...+.......    ...+.....+|.+++--+
T Consensus       148 Rec~k~e~-l~~~iL~~~~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt  225 (335)
T PF08569_consen  148 RECIKHES-LAKIILYSECFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT  225 (335)
T ss_dssp             HHHTTSHH-HHHHHHTSGGGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred             HHHHhhHH-HHHHHhCcHHHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence            77666544 556777777888888887 677788889999999886665332222222    456678888999999999


Q ss_pred             HHHHHHHHHHhccCChHH---HHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC---hHHHHHHHHc--CchHH
Q 016714          261 LTDACWALSYLSDGPNDK---IQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD---DAQTQFVIDN--GVLPC  332 (384)
Q Consensus       261 ~~~a~~~l~~l~~~~~~~---~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~---~~~~~~i~~~--g~l~~  332 (384)
                      +..++..|+.+.......   ...+-+..-+..++.+|.+.+..++..|..++--.++..   +.....+...  .++..
T Consensus       226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~f  305 (335)
T PF08569_consen  226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRF  305 (335)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHH
T ss_pred             ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHH
Confidence            999999999998654322   223334466889999999999999999999998888653   2333333332  44555


Q ss_pred             HHHHhccC-CchhHHHHHHHHHHHHh
Q 016714          333 LYQLLTQN-HKKSIKKEACWTISNIT  357 (384)
Q Consensus       333 L~~ll~~~-~~~~v~~~a~~~L~nl~  357 (384)
                      |.+...+. ++.....|=.+.+..|.
T Consensus       306 l~~f~~~~~~D~qf~~EK~~li~~i~  331 (335)
T PF08569_consen  306 LKDFHTDRTDDEQFEDEKAYLIKQIE  331 (335)
T ss_dssp             HHTTTTT--S-CHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCccccHHHHHHHHHHHHH
Confidence            55554443 35555555555555443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.52  E-value=0.012  Score=59.05  Aligned_cols=263  Identities=16%  Similarity=0.150  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHHHHhcC-CCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 016714           88 PALQLEATTQFRKLLSI-ERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFV  166 (384)
Q Consensus        88 ~~~~~~a~~~l~~l~s~-~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~  166 (384)
                      +.....|++.+..+.+. .+..+.+...+.=+++.+...++++- --+|..|||.++.+++-  +......-..++....
T Consensus       432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~--df~d~~~l~~ale~t~  508 (1010)
T KOG1991|consen  432 PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSI--DFKDPNNLSEALELTH  508 (1010)
T ss_pred             hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhc--cCCChHHHHHHHHHHH
Confidence            33444455555544321 12445555556667788888888877 68999999999999863  2222222234666677


Q ss_pred             Hhhc-CCCHHHHHHHHHHHHhhhCCCCchhhHHHhc--CChHHHHHHhcccchhHHHHHHHH-HHhhhhcCCCCCChhhh
Q 016714          167 QLLS-SGSDDVREQAVWALGNVAGDSPSCRDLVLSS--GALMPLLAQLNEHSKLSMLRNATW-TLSNFCRGKPPTPFEQV  242 (384)
Q Consensus       167 ~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~--g~i~~L~~~l~~~~~~~~~~~a~~-~L~~L~~~~~~~~~~~~  242 (384)
                      +.|. +.+..|+-.|+.||..+..+.+.....+..+  +.++.|+.+.+.- +.+.+..+.- .+..++..-........
T Consensus       509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~-End~Lt~vme~iV~~fseElsPfA~eL~  587 (1010)
T KOG1991|consen  509 NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV-ENDDLTNVMEKIVCKFSEELSPFAVELC  587 (1010)
T ss_pred             HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            7776 6778899999999999988776543333321  1333444444222 2222233222 22333332222333444


Q ss_pred             hchHHHHHHhhcc---CC---HhHHHHHHHHHHHhcc------CChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714          243 KPALPILQRLIHL---ND---EEVLTDACWALSYLSD------GPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV  310 (384)
Q Consensus       243 ~~~~~~L~~lL~~---~~---~~i~~~a~~~l~~l~~------~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l  310 (384)
                      ..+...+.++++.   .+   .+=...|.++|..+..      ..++.... ++.-+++.+-..|++.-.++-+.++.++
T Consensus       588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~ei~  666 (1010)
T KOG1991|consen  588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLEIV  666 (1010)
T ss_pred             HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            6677777888774   11   2223333343333321      11111111 2334556666666776677778888888


Q ss_pred             HHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          311 GNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       311 ~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .+++...++..-.++  |+++.+.+.+... ..+--.+..-+|.|+..
T Consensus       667 ~~~t~~~~~Isp~mW--~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt  711 (1010)
T KOG1991|consen  667 SSLTFLSKEISPIMW--GLLELILEVFQDD-GIDYFTDMMPALHNYVT  711 (1010)
T ss_pred             hhhhhhhcccCHHHH--HHHHHHHHHHhhh-hHHHHHHHHHHHhhhee
Confidence            888766554444444  4677777777766 55666667777777665

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.48  E-value=0.011  Score=53.54  Aligned_cols=191  Identities=17%  Similarity=0.237  Sum_probs=121.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH---HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcC--Cc
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVI---KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASG--TS  150 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~---~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~--~~  150 (384)
                      +...+..+.......+..++..+.+++...   ....++   ..-+++.+...++.+. .+-+..|+.+++-++-.  ..
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~---~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g  120 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSR---YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG  120 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence            677788888888999999999999998743   223333   2356788888888877 56667777777766553  23


Q ss_pred             hhHHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHhhh---CCCCchhhHHHhcCChHHHHH--Hhccc---------
Q 016714          151 EHTRVVIEHGAVPMFVQLLSSG--SDDVREQAVWALGNVA---GDSPSCRDLVLSSGALMPLLA--QLNEH---------  214 (384)
Q Consensus       151 ~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~---~~~~~~~~~i~~~g~i~~L~~--~l~~~---------  214 (384)
                      .....+++ ...|.|...+.+.  +..++..|+.+|+-++   +.++......++  .+..+..  ....+         
T Consensus       121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence            44555555 4778888888764  4567777887887764   333221111111  2221211  11111         


Q ss_pred             chhHHHHHHHHHHhhhhcCCCCCCh-hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 016714          215 SKLSMLRNATWTLSNFCRGKPPTPF-EQVKPALPILQRLIHLNDEEVLTDACWALSYLSD  273 (384)
Q Consensus       215 ~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~  273 (384)
                      ++..+...|+.+-+-|...-|.... ......+|.|..+|.++|.+++..|-.+|+-|..
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            1245666665555555544333222 3347789999999999999999999999887753

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.48  E-value=0.042  Score=53.38  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=76.0

Q ss_pred             ChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC-CCChhhHHHHHHHHHHhhcC
Q 016714          238 PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM-HPSATVLIPALRTVGNIVTG  316 (384)
Q Consensus       238 ~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~  316 (384)
                      .......++..|-++|.+....++.-++..+..|+.... .++.+-.+  .+.++..|+ ..+..++..|+-.|.-+|..
T Consensus       323 e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~  399 (938)
T KOG1077|consen  323 EPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV  399 (938)
T ss_pred             cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence            344556777777788888888888888888888876633 33344333  778888887 67889999999999988753


Q ss_pred             ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          317 DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       317 ~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                        +....+     +.-|++.|.+. ++.+|++.+.-+.-++.
T Consensus       400 --~Nak~I-----V~elLqYL~tA-d~sireeivlKvAILaE  433 (938)
T KOG1077|consen  400 --SNAKQI-----VAELLQYLETA-DYSIREEIVLKVAILAE  433 (938)
T ss_pred             --hhHHHH-----HHHHHHHHhhc-chHHHHHHHHHHHHHHH
Confidence              333333     33466777777 88888886655555553

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.069  Score=52.65  Aligned_cols=179  Identities=17%  Similarity=0.164  Sum_probs=105.9

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .|..+-+.|++.|+.++-.|++.+..+-    -+.+.-+    ++-.+-+...+.. +-+|..|+.++..+-+-.++...
T Consensus       109 SIntfQk~L~DpN~LiRasALRvlSsIR----vp~IaPI----~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~  179 (968)
T KOG1060|consen  109 SINTFQKALKDPNQLIRASALRVLSSIR----VPMIAPI----MLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKD  179 (968)
T ss_pred             eHHHHHhhhcCCcHHHHHHHHHHHHhcc----hhhHHHH----HHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHH
Confidence            4666677777888888877777766441    2211111    1223334445556 89999999999998887777766


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~  234 (384)
                      .++     ..+-.+|.+.++.|.-.|+.++-.+|-+.-   +.+  ++-...|.++| .+-+.-=+..+..+|..-|+..
T Consensus       180 qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--HknyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~  248 (968)
T KOG1060|consen  180 QLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKNYRKLCRLL-PDVDEWGQVVLINMLTRYARHQ  248 (968)
T ss_pred             HHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHHHHHHHhhc-cchhhhhHHHHHHHHHHHHHhc
Confidence            443     455667888889999999999888875532   222  23445566666 3323323334444444444433


Q ss_pred             -CCCCh----------------------------hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 016714          235 -PPTPF----------------------------EQVKPALPILQRLIHLNDEEVLTDACWALSYLSD  273 (384)
Q Consensus       235 -~~~~~----------------------------~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~  273 (384)
                       +.+..                            ..+.-++...-.+|++.++.+...++.+.++++-
T Consensus       249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP  316 (968)
T KOG1060|consen  249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP  316 (968)
T ss_pred             CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC
Confidence             21100                            0112233444456677777777777777777764

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.41  E-value=0.0047  Score=56.16  Aligned_cols=212  Identities=12%  Similarity=0.096  Sum_probs=143.7

Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch-----hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC-----RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN  229 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~  229 (384)
                      .+...+.+..|+..|..-+-+.+..+..+.+++.......     .+.+... .-+.+..++....++++.-.+...|..
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence            4556688999999999888899999999999988654332     2333332 123333344344566777777777877


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHHhcCCCChhhHHHH
Q 016714          230 FCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA---GVCPRLVELLMHPSATVLIPA  306 (384)
Q Consensus       230 L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~---g~~~~L~~lL~~~~~~v~~~a  306 (384)
                      .++...-.......+.+-.+....+.++-++..+|..++..+..........++..   .++.....+|.+++.-++..+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            77763222233336667777888899999999999999988766655555555544   456788889999999999999


Q ss_pred             HHHHHHhhcCChH--H-HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHH
Q 016714          307 LRTVGNIVTGDDA--Q-TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA--GNRAQIQVHD  368 (384)
Q Consensus       307 ~~~l~nl~~~~~~--~-~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~i~~l~  368 (384)
                      +..||.+......  . ..++-+..-+..++.+|.+. +..++-+|.-++--+++  ..+..|..++
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL  295 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDIL  295 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHH
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHHH
Confidence            9999999864332  1 23344556788899999998 89999999999988887  2333344443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.39  E-value=0.026  Score=56.23  Aligned_cols=140  Identities=16%  Similarity=0.156  Sum_probs=104.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      .+.+++.+.+.|.+++.-.-..+..+....  | -..++   .++.+.+=+.+++ +.+|--|++.++.+-.  +    .
T Consensus        57 f~dViK~~~trd~ElKrL~ylYl~~yak~~--P-~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~----e  123 (757)
T COG5096          57 FPDVIKNVATRDVELKRLLYLYLERYAKLK--P-ELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--K----E  123 (757)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhccC--H-HHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--H----H
Confidence            466677667777777776666666665542  2 22222   4777888888888 9999999999987733  1    2


Q ss_pred             HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          156 VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      +.. .+++.+.+++.++++.||..|+.|+.++..-++   +.+.+.|.+..+..++ .+.++.+..+|+.+|..+...
T Consensus       124 l~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         124 LLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence            222 468899999999999999999999999986654   4455666666666666 888999999999999988765

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.37  E-value=0.027  Score=52.16  Aligned_cols=232  Identities=15%  Similarity=0.099  Sum_probs=150.4

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchh
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCR  195 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~  195 (384)
                      ..+.+..++-+++ .+++..+.+++..+..+ ++....+.+.+.--.++.-|..  .+..-+++|+..+..+..-....+
T Consensus        26 ~~~~i~~~lL~~~-~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~  103 (371)
T PF14664_consen   26 FGERIQCMLLSDS-KEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK  103 (371)
T ss_pred             HHHHHHHHHCCCc-HHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence            4455554555555 79999999999998885 7778888887755555666654  456678899998888775422211


Q ss_pred             hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 016714          196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP  275 (384)
Q Consensus       196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~  275 (384)
                        .+..|++..++.+. .+.+..++..+..+|..++-.+|  ......|++..|.+.+..+..++....+.++.++.+.+
T Consensus       104 --~~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p  178 (371)
T PF14664_consen  104 --EIPRGVVRALVAIA-EHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP  178 (371)
T ss_pred             --cCCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc
Confidence              13566788888888 66777899999999999998744  44455789999988887766668889999999999877


Q ss_pred             hHHHHHHHHcCChHHHHHhcCCC-------Ch--hhHHHHHHHHHHhhcCChHHHHHHHH-cCchHHHHHHhccCCchhH
Q 016714          276 NDKIQAVIEAGVCPRLVELLMHP-------SA--TVLIPALRTVGNIVTGDDAQTQFVID-NGVLPCLYQLLTQNHKKSI  345 (384)
Q Consensus       276 ~~~~~~~~~~g~~~~L~~lL~~~-------~~--~v~~~a~~~l~nl~~~~~~~~~~i~~-~g~l~~L~~ll~~~~~~~v  345 (384)
                      ..+. .+...--++.++.-+.+.       +.  +-...+..++..+...=+...-.-.+ ..++..|+..|..+ .+++
T Consensus       179 ~tR~-yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p-~~~i  256 (371)
T PF14664_consen  179 RTRK-YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLP-NPEI  256 (371)
T ss_pred             chhh-hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCC-CHHH
Confidence            6543 222212234444333222       12  23334445555443221111100011 14667788888877 7778


Q ss_pred             HHHHHHHHHHHhc
Q 016714          346 KKEACWTISNITA  358 (384)
Q Consensus       346 ~~~a~~~L~nl~~  358 (384)
                      |+...-.+..+-.
T Consensus       257 r~~Ildll~dllr  269 (371)
T PF14664_consen  257 RKAILDLLFDLLR  269 (371)
T ss_pred             HHHHHHHHHHHHC
Confidence            8887777776664

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.30  E-value=0.0044  Score=60.73  Aligned_cols=215  Identities=15%  Similarity=0.080  Sum_probs=144.7

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      +....++.+.....+...+....+|.-..+......      ..+++.+.+.+.....---..+++.+++|+++.+...+
T Consensus       504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r  577 (748)
T KOG4151|consen  504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR  577 (748)
T ss_pred             cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence            456667776666666677776666662223321111      12455555555443312335789999999999988888


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      ..+.+.-.++.+-.++..+++.++..++..+.||.-..--+...+.+...=.++........+..+..+++.++..+...
T Consensus       578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv  657 (748)
T KOG4151|consen  578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSV  657 (748)
T ss_pred             HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhc
Confidence            88888877888777888899999999999999998766555555555443334444443445666666777776655544


Q ss_pred             CCC-CC-hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHh
Q 016714          234 KPP-TP-FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVEL  294 (384)
Q Consensus       234 ~~~-~~-~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~l  294 (384)
                      ..+ .. ..........++.++.+.+.+++...+..+.++.....+....+.+...++.+..+
T Consensus       658 ~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~  720 (748)
T KOG4151|consen  658 VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL  720 (748)
T ss_pred             chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence            322 22 33346677888999999999999999999999776666666666666655555544

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.0081  Score=58.41  Aligned_cols=88  Identities=18%  Similarity=0.178  Sum_probs=53.0

Q ss_pred             ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHH
Q 016714          254 HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL-MHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPC  332 (384)
Q Consensus       254 ~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~  332 (384)
                      ...|.+++..|.-+|+.++..+++.         ++..+.+| .+-++.|+.-++.+||-.|+++....       ++..
T Consensus       565 sD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~l  628 (929)
T KOG2062|consen  565 SDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINL  628 (929)
T ss_pred             cccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHH
Confidence            3456667777777777776665543         35556666 34466777777777777766654221       2334


Q ss_pred             HHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          333 LYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       333 L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      |-.+..++ ..-||+-|+.+++-|.-
T Consensus       629 Lepl~~D~-~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  629 LEPLTSDP-VDFVRQGALIALAMIMI  653 (929)
T ss_pred             HhhhhcCh-HHHHHHHHHHHHHHHHH
Confidence            45555555 56677777776666653

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.28  E-value=0.0026  Score=63.08  Aligned_cols=191  Identities=18%  Similarity=0.172  Sum_probs=126.5

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch-------------hhHHHhcCChHHHHHHhcccchhHHHHHHHHHH
Q 016714          161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC-------------RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTL  227 (384)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L  227 (384)
                      +...|+.+|++  +++-..++.++.-+..|++..             |+.+. ..++|.|++.+. ..+.........+|
T Consensus       816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~-t~~~~~K~~yl~~L  891 (1030)
T KOG1967|consen  816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFE-TAPGSQKHNYLEAL  891 (1030)
T ss_pred             HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhc-cCCccchhHHHHHH
Confidence            34556666665  445556666776666655432             22222 236777888773 44455666777778


Q ss_pred             hhhhcCCCCCC-hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCC---hhhH
Q 016714          228 SNFCRGKPPTP-FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS---ATVL  303 (384)
Q Consensus       228 ~~L~~~~~~~~-~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~---~~v~  303 (384)
                      +++..+-|... ......++|.|++.|.-+|..++..++.+|.-+....+..... .-..++|.+..+=.+++   ..++
T Consensus       892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~-~~~Tlvp~lLsls~~~~n~~~~VR  970 (1030)
T KOG1967|consen  892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE-HLSTLVPYLLSLSSDNDNNMMVVR  970 (1030)
T ss_pred             HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH-HHhHHHHHHHhcCCCCCcchhHHH
Confidence            87777544322 2233678899999999999999999999998877654432211 11245677776665554   5789


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714          304 IPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT  357 (384)
Q Consensus       304 ~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  357 (384)
                      ..|+.+++.+....|...-.-....++..|.+.|.++ +..+|++|+.+=.+-.
T Consensus       971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhhh
Confidence            9999999999985554333334446788899999999 8999999987655433

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.17  E-value=0.00086  Score=61.80  Aligned_cols=196  Identities=19%  Similarity=0.161  Sum_probs=114.5

Q ss_pred             CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC----CCCCChhhh---hc
Q 016714          172 GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG----KPPTPFEQV---KP  244 (384)
Q Consensus       172 ~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~----~~~~~~~~~---~~  244 (384)
                      .+.-++..|+.+++-+.-+.....+...-......++..+ .+..-..+..++|+++|++..    -|.+.....   ..
T Consensus       403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~  481 (728)
T KOG4535|consen  403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL  481 (728)
T ss_pred             HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH
Confidence            4455667777777766655443334433334455555555 444566788999999999873    244332222   12


Q ss_pred             hHHHHHHhh---ccCCHhHHHHHHHHHHHhccCChHHHHHHHHc-------CChHHHHHh-cCCCChhhHHHHHHHHHHh
Q 016714          245 ALPILQRLI---HLNDEEVLTDACWALSYLSDGPNDKIQAVIEA-------GVCPRLVEL-LMHPSATVLIPALRTVGNI  313 (384)
Q Consensus       245 ~~~~L~~lL---~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~-------g~~~~L~~l-L~~~~~~v~~~a~~~l~nl  313 (384)
                      .+..+...-   ...+..+...+.++|+++...    .+.+.+.       |.+..+... .-...-+++-.||.++||+
T Consensus       482 ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNL  557 (728)
T KOG4535|consen  482 LLLKMLRSAIEASADKDKVKSNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNL  557 (728)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHh
Confidence            222222221   123467899999999998753    2222222       222222221 1234668999999999999


Q ss_pred             hcCChH-HHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHhCCc
Q 016714          314 VTGDDA-QTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA--GNRAQIQVHDSFHL  372 (384)
Q Consensus       314 ~~~~~~-~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~i~~l~~~~~  372 (384)
                      ..+..- ....-+..-+++.|..++.+..+.++|..|+.+|.--..  +..++....+++-+
T Consensus       558 fkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv  619 (728)
T KOG4535|consen  558 FKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYALSWNALV  619 (728)
T ss_pred             hcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHHhHHHHHHH
Confidence            875432 111112334677888888776688999999998887764  45555554444433

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.12  E-value=0.025  Score=45.10  Aligned_cols=124  Identities=12%  Similarity=0.133  Sum_probs=96.3

Q ss_pred             hhhHHHhcCChHHHHHHhcccch-----hHHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhccC--CHhHHHHHH
Q 016714          194 CRDLVLSSGALMPLLAQLNEHSK-----LSMLRNATWTLSNFCRGKPPTPFEQV-KPALPILQRLIHLN--DEEVLTDAC  265 (384)
Q Consensus       194 ~~~~i~~~g~i~~L~~~l~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~~~L~~lL~~~--~~~i~~~a~  265 (384)
                      +...++..||+..|++++.....     .+....++.++..|..+. ....+.. ..++..++.++...  |..+...++
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence            34567888999999999965553     467888888999988873 3233333 55666666666543  688999999


Q ss_pred             HHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 016714          266 WALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD  318 (384)
Q Consensus       266 ~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  318 (384)
                      ..|-++...++.....+.+.=-++.|+..|..+++.++..|+..+..+....+
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~  134 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD  134 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence            99999999888877777776779999999999999999999998888865544

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.056  Score=53.23  Aligned_cols=259  Identities=14%  Similarity=0.153  Sum_probs=152.4

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      -.|.+|+..-+.+.+++.-.--.|-..+-..  +....    =-|..+-+-|.+++ +.+|.-|+++|..|--       
T Consensus        72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq--pdLAL----LSIntfQk~L~DpN-~LiRasALRvlSsIRv-------  137 (968)
T KOG1060|consen   72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ--PDLAL----LSINTFQKALKDPN-QLIRASALRVLSSIRV-------  137 (968)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcC--CCcee----eeHHHHHhhhcCCc-HHHHHHHHHHHHhcch-------
Confidence            3577777777777776666555555554322  22111    13677888888888 8888888887766522       


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~  234 (384)
                      .++..=++-.+-++..+.++-||..|+.|+-.+-.-++..++.+.      .+++.|..+.++-+...|+.++-.+|-..
T Consensus       138 p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~------e~I~~LLaD~splVvgsAv~AF~evCPer  211 (968)
T KOG1060|consen  138 PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE------EVIKKLLADRSPLVVGSAVMAFEEVCPER  211 (968)
T ss_pred             hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH------HHHHHHhcCCCCcchhHHHHHHHHhchhH
Confidence            122111122233345578899999999999999877666555433      34555547778889999999998888542


Q ss_pred             CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC---ChHHH---------------------HHHH-Hc---C
Q 016714          235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG---PNDKI---------------------QAVI-EA---G  286 (384)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~---~~~~~---------------------~~~~-~~---g  286 (384)
                          ...+.+-...+..+|-.-|..-+..++..|...+..   .+...                     .... +.   -
T Consensus       212 ----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~l  287 (968)
T KOG1060|consen  212 ----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKL  287 (968)
T ss_pred             ----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHH
Confidence                344455556666666555555555555555444431   00000                     0000 00   1


Q ss_pred             ChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 016714          287 VCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV  366 (384)
Q Consensus       287 ~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~  366 (384)
                      ++...-.+|.+.++.+...++.++..++..+  +..     .+...|+.+|.+.  +.++.-....+.-++-..+.....
T Consensus       288 LL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~~-----~i~kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~lF~P  358 (968)
T KOG1060|consen  288 LLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QVT-----KIAKALVRLLRSN--REVQYVVLQNIATISIKRPTLFEP  358 (968)
T ss_pred             HHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HHH-----HHHHHHHHHHhcC--CcchhhhHHHHHHHHhcchhhhhh
Confidence            2344556677888889999999998887643  222     2345677777654  344444444444444444444433

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.1  Score=53.82  Aligned_cols=242  Identities=12%  Similarity=0.072  Sum_probs=149.0

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC-chhhHH
Q 016714          122 FVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIE--HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP-SCRDLV  198 (384)
Q Consensus       122 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~i  198 (384)
                      +.....+.++..+|..+-.+|..++.. +.......+  ..+...|..-+++.+...+...+.+|..|....+ ...+.+
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            344444443389999999999999886 332222222  1233445555555666777777888887775444 222322


Q ss_pred             HhcCChHHHHHHhcccchhHHHHHHHHHHhhhh--cCC----CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 016714          199 LSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC--RGK----PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLS  272 (384)
Q Consensus       199 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~--~~~----~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~  272 (384)
                      ..  .|+.++-.+ ...+...++++..+|..++  ...    .++....+...++.+...+-.+........+-++..+.
T Consensus       737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            22  233333333 5567778888888888888  221    22235556777777776665555444444345555544


Q ss_pred             cCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHH
Q 016714          273 DGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWT  352 (384)
Q Consensus       273 ~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~  352 (384)
                      .........-.-.+++..+.-+|.+++++++..|+..+.-++..-++..-.-....+++.+..++... .-.+|..+-..
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            32221111112235677888888999999999999999999987665433323334788888888877 78888888888


Q ss_pred             HHHHhc-CCHHHHHHHH
Q 016714          353 ISNITA-GNRAQIQVHD  368 (384)
Q Consensus       353 L~nl~~-~~~~~i~~l~  368 (384)
                      |--++. -..+.++.+.
T Consensus       893 lekLirkfg~~eLe~~~  909 (1176)
T KOG1248|consen  893 LEKLIRKFGAEELESFL  909 (1176)
T ss_pred             HHHHHHHhCHHHHHhhC
Confidence            877776 3444455444

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=97.09  E-value=0.004  Score=52.01  Aligned_cols=147  Identities=12%  Similarity=0.127  Sum_probs=90.9

Q ss_pred             HHHHHhhhHHHHhhhhccccCCCcccccchhhhhHHhhhcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH
Q 016714           35 EIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVI  114 (384)
Q Consensus        35 ~lRk~kr~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~  114 (384)
                      ++=..||-+++.+.+.........+..    .............+++.+.+.....  ..+..|+..+..+...-++.|+
T Consensus        31 ~~~~ekKw~li~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl  104 (187)
T PF06371_consen   31 NLPPEKKWQLIQQHRQKQAKHSSSSSK----SKSKASAKSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFL  104 (187)
T ss_dssp             TS-HHHHHHHHHHHHHH---------------------CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-
T ss_pred             CCCHHHHHHHHHhHHHhccccchhhhh----hhhhhhhhhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhc
Confidence            455677777777777543222200000    0000011123466788887665432  4555566555543234477788


Q ss_pred             HcCCHHHHHHhhcC--------CCChHHHHHHHHHHHHHhcCCchhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHH
Q 016714          115 KAGVVPRFVEFLGR--------HDMPQLQFEAAWALTNVASGTSEHTRVVIE-HGAVPMFVQLLSSGSDDVREQAVWALG  185 (384)
Q Consensus       115 ~~g~i~~Lv~lL~~--------~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~  185 (384)
                      +.|++..|+.+|..        ..+..++.+++.||..|... ......++. .+++..|+..|.+++..++..++..|.
T Consensus       105 ~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~  183 (187)
T PF06371_consen  105 ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILA  183 (187)
T ss_dssp             HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            99999999998863        12268899999999999885 555666665 688999999999999999999999998


Q ss_pred             hhh
Q 016714          186 NVA  188 (384)
Q Consensus       186 nl~  188 (384)
                      .+|
T Consensus       184 ~lc  186 (187)
T PF06371_consen  184 ALC  186 (187)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.07  E-value=0.033  Score=55.55  Aligned_cols=233  Identities=15%  Similarity=0.083  Sum_probs=148.6

Q ss_pred             hhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCC
Q 016714          125 FLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL-LSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGA  203 (384)
Q Consensus       125 lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~  203 (384)
                      .|.....|.+...+.|.+...++........+-  -.+...+.. ..+..+.++..|+.+++..++-.. +..  ...++
T Consensus       457 ~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~~p~i  531 (1005)
T KOG2274|consen  457 GLVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--LQPMI  531 (1005)
T ss_pred             hcccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--cchHH
Confidence            333334477777888888866553211111111  012222332 234566677778888777763221 111  12345


Q ss_pred             hHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh--ccCCHhHHHHHHHHHHHhccCChHHHHH
Q 016714          204 LMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI--HLNDEEVLTDACWALSYLSDGPNDKIQA  281 (384)
Q Consensus       204 i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~i~~~a~~~l~~l~~~~~~~~~~  281 (384)
                      ++.|+.+. ...+.++......+|+..|..+|......-..+.|.+..++  .++||.+...+-.++-.++.... +...
T Consensus       532 ld~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g~  609 (1005)
T KOG2274|consen  532 LDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYGP  609 (1005)
T ss_pred             HHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhcc
Confidence            55666665 55677888899999999999887777777677888766554  56678777777777776665321 2222


Q ss_pred             HHHcCChHHHHHhcCCCC----hhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714          282 VIEAGVCPRLVELLMHPS----ATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT  357 (384)
Q Consensus       282 ~~~~g~~~~L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  357 (384)
                       .....+|.++..|..+.    .....-++-+|.-+..+.+.-....+-.-++|.+.++.-++++...-..+.-||..+.
T Consensus       610 -m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I  688 (1005)
T KOG2274|consen  610 -MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI  688 (1005)
T ss_pred             -hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence             22356899999997765    5566678888887777654333333445688889998888778888888888999888


Q ss_pred             cCCHHHHH
Q 016714          358 AGNRAQIQ  365 (384)
Q Consensus       358 ~~~~~~i~  365 (384)
                      ..+.+|+.
T Consensus       689 s~~~eq~~  696 (1005)
T KOG2274|consen  689 SVTLEQLL  696 (1005)
T ss_pred             hcCHHHHH
Confidence            86666644

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.05  E-value=0.035  Score=55.41  Aligned_cols=234  Identities=15%  Similarity=0.075  Sum_probs=146.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHH
Q 016714           85 SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPM  164 (384)
Q Consensus        85 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~  164 (384)
                      +..|.....+.+.+.++.+..  .-...+. .-.+...+..+..+..+-++..|+++++..++  ....... ..++++.
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHHH
Confidence            455777778888888775541  1111111 11344455555544446788888888877763  2222222 2367788


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc-ccchhHHHHHHHHHHhhhhcCCCCCChhhhh
Q 016714          165 FVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN-EHSKLSMLRNATWTLSNFCRGKPPTPFEQVK  243 (384)
Q Consensus       165 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  243 (384)
                      |+++....+.++....+.+|+..+.-+|+.... .+..+.|-.+.++. ++.|+.+...+--++-.++.. .........
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~e  612 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGPMQE  612 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcchHH
Confidence            888888888999999999999999887765443 44556666666554 455777777777777777764 222233446


Q ss_pred             chHHHHHHhhccCC----HhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC-CCChhhHHHHHHHHHHhhcCCh
Q 016714          244 PALPILQRLIHLND----EEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM-HPSATVLIPALRTVGNIVTGDD  318 (384)
Q Consensus       244 ~~~~~L~~lL~~~~----~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~  318 (384)
                      .++|.++..|..++    .....-++..|..+..+.+.-.....-.-++|.+.+..- +++......+-.||..+...+.
T Consensus       613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~  692 (1005)
T KOG2274|consen  613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL  692 (1005)
T ss_pred             HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence            78999999998776    445555566666555543321222222345777777764 4566777888888888887766


Q ss_pred             HHHHHHHH
Q 016714          319 AQTQFVID  326 (384)
Q Consensus       319 ~~~~~i~~  326 (384)
                      ++...--+
T Consensus       693 eq~~t~~~  700 (1005)
T KOG2274|consen  693 EQLLTWHD  700 (1005)
T ss_pred             HHHHhhcc
Confidence            66544333

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.99  E-value=0.064  Score=44.36  Aligned_cols=110  Identities=17%  Similarity=0.269  Sum_probs=78.6

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 016714           87 DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFV  166 (384)
Q Consensus        87 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~  166 (384)
                      ++.++..++.++..++..-  ++.-    ...+|.+...|.+++ +.+|..|+.+|+.+...+.--.    +...+..++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~--~~~v----e~~~~~l~~~L~D~~-~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l   69 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRY--PNLV----EPYLPNLYKCLRDED-PLVRKTALLVLSHLILEDMIKV----KGQLFSRIL   69 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhC--cHHH----HhHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHcCceee----hhhhhHHHH
Confidence            4678888999999887653  3221    135889999999998 9999999999999876422111    112347788


Q ss_pred             HhhcCCCHHHHHHHHHHHHhhhCC-CCchhhHHHhcCChHHHHHHhc
Q 016714          167 QLLSSGSDDVREQAVWALGNVAGD-SPSCRDLVLSSGALMPLLAQLN  212 (384)
Q Consensus       167 ~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~~l~  212 (384)
                      .++.+++++++..|..++..+... .+.   .+.  ..++.++..|.
T Consensus        70 ~~l~D~~~~Ir~~A~~~~~e~~~~~~~~---~i~--~~~~e~i~~l~  111 (178)
T PF12717_consen   70 KLLVDENPEIRSLARSFFSELLKKRNPN---IIY--NNFPELISSLN  111 (178)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHhccch---HHH--HHHHHHHHHHh
Confidence            888999999999999999999866 332   222  24555555553

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.97  E-value=0.027  Score=53.42  Aligned_cols=64  Identities=19%  Similarity=0.152  Sum_probs=44.9

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           83 VWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        83 l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      +.+.-..+++++++.+..+....   -...+++ ..+..|-.+|+++. ...|+.|.++|..++-..|+
T Consensus       273 ls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~  336 (898)
T COG5240         273 LSDKFEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQ  336 (898)
T ss_pred             hcCcchhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCc
Confidence            33445778899998887664321   1222332 25788888999988 89999999999999875443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.95  E-value=0.011  Score=58.22  Aligned_cols=221  Identities=13%  Similarity=0.042  Sum_probs=155.3

Q ss_pred             HhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH-hhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHH
Q 016714          145 VASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALG-NVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNA  223 (384)
Q Consensus       145 l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a  223 (384)
                      ++......+...++.|+...|+.+.....+..+-....+|. .+.-.+.  +    ....++++.+.+.....-.-....
T Consensus       489 ~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~--~----~~~v~~~~~s~~~~d~~~~en~E~  562 (748)
T KOG4151|consen  489 LAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE--R----SYEVVKPLDSALHNDEKGLENFEA  562 (748)
T ss_pred             HhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC--c----hhhhhhhhcchhhhhHHHHHHHHH
Confidence            44445666777888899999999998888887777777777 3322221  1    123566777766333322234567


Q ss_pred             HHHHhhhhcCCCCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHH-cCChHHHHHhcCCCChh
Q 016714          224 TWTLSNFCRGKPPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIE-AGVCPRLVELLMHPSAT  301 (384)
Q Consensus       224 ~~~L~~L~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~-~g~~~~L~~lL~~~~~~  301 (384)
                      +-++.||+..+........ ...++.+-.++..+++..+..++.++.||.-++.-....+.+ ...++....++......
T Consensus       563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~  642 (748)
T KOG4151|consen  563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK  642 (748)
T ss_pred             HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence            8889999887654444444 556666777788889999999999999999887655555565 34567777777766777


Q ss_pred             hHHHHHHHHHHhhcCChHHHH-HHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          302 VLIPALRTVGNIVTGDDAQTQ-FVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       302 v~~~a~~~l~nl~~~~~~~~~-~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      ....++.++..|++....... ..-.....+.+..++.+. +..++.-....+.|+..+..+-+..+.+...
T Consensus       643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~  713 (748)
T KOG4151|consen  643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEV  713 (748)
T ss_pred             HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchH
Confidence            777777777767665544444 222346788899999999 8999999999999977777777777766554

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.94  E-value=0.091  Score=48.81  Aligned_cols=174  Identities=14%  Similarity=0.200  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHH-hhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHh
Q 016714          174 DDVREQAVWALG-NVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRL  252 (384)
Q Consensus       174 ~~v~~~a~~~L~-nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~l  252 (384)
                      .+-+..|+.-|. -++.++..+-+.... .++..+++.|.+..+.....-|+..|..+|+..+..-+....-.+..+++.
T Consensus       301 a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea  379 (516)
T KOG2956|consen  301 ASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA  379 (516)
T ss_pred             hhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence            344455555333 334443332222221 155677888855578888999999999999986654444444445544444


Q ss_pred             hccCCHhHHHHHHH-HHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCch
Q 016714          253 IHLNDEEVLTDACW-ALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD-AQTQFVIDNGVL  330 (384)
Q Consensus       253 L~~~~~~i~~~a~~-~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~g~l  330 (384)
                      -...++++...|.. |+.-++.+.+...        +..+..++...+.+....++..+..++..-. +....++ ..+.
T Consensus       380 a~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~dia  450 (516)
T KOG2956|consen  380 AKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-PDIA  450 (516)
T ss_pred             HhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhh
Confidence            44455554444443 3444555544322        3334444444666666777778888876533 2222222 4689


Q ss_pred             HHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          331 PCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       331 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      |.+++...+. +..+||.|++||..+..
T Consensus       451 P~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  451 PCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence            9999999999 99999999999999986

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.93  E-value=0.076  Score=50.42  Aligned_cols=205  Identities=17%  Similarity=0.166  Sum_probs=125.8

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhh-cC----CCHHHHHHHHHHHHhhhC-CC
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL-SS----GSDDVREQAVWALGNVAG-DS  191 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL-~~----~~~~v~~~a~~~L~nl~~-~~  191 (384)
                      ++..++.+..+..++..+..++.+++.+...-+..-  ..+ ..+..+..-+ ..    ......+..+|..-.+.. ..
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~  266 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLD-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH  266 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHH-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence            556666666554447788888888888776411111  111 2233333333 22    223444555566555543 33


Q ss_pred             CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC---------C----ChhhhhchHHHHHHhhccCCH
Q 016714          192 PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP---------T----PFEQVKPALPILQRLIHLNDE  258 (384)
Q Consensus       192 ~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~---------~----~~~~~~~~~~~L~~lL~~~~~  258 (384)
                      +..      ...+..|+.++. +  +++-..++.++..+....+.         .    .......++|.|++.....+.
T Consensus       267 ~~~------~~~~~~L~~lL~-~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~  337 (415)
T PF12460_consen  267 PLA------TELLDKLLELLS-S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD  337 (415)
T ss_pred             chH------HHHHHHHHHHhC-C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence            321      124566777773 3  55667777777777665211         1    112235678888888888777


Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHH
Q 016714          259 EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQ  335 (384)
Q Consensus       259 ~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~  335 (384)
                      +.+...+.+|+++..+-+..+-.---..++|.|++-|..++..++..++.++..+....++....-++ .+++.|++
T Consensus       338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~  413 (415)
T PF12460_consen  338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK  413 (415)
T ss_pred             hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence            78888899999999887644322222368999999999999999999999999999877655544332 34454443

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.92  E-value=0.0034  Score=45.98  Aligned_cols=85  Identities=19%  Similarity=0.132  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhhhCCCCc-hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcc
Q 016714          177 REQAVWALGNVAGDSPS-CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHL  255 (384)
Q Consensus       177 ~~~a~~~L~nl~~~~~~-~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~  255 (384)
                      +..++++|..++..-+. ....+ + .++++++..+ .+++..++..++.+|.|++.............+++.|.+++..
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l-~-~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL-D-EILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH-H-HHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            45567777777643322 22222 2 3788999999 8889999999999999999875444444557888889999988


Q ss_pred             CCHhHHHHH
Q 016714          256 NDEEVLTDA  264 (384)
Q Consensus       256 ~~~~i~~~a  264 (384)
                      .|+.|+..|
T Consensus        80 ~d~~Vr~~a   88 (97)
T PF12755_consen   80 PDENVRSAA   88 (97)
T ss_pred             CchhHHHHH
Confidence            888887766

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.92  E-value=0.13  Score=50.54  Aligned_cols=241  Identities=15%  Similarity=0.197  Sum_probs=146.9

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 016714           87 DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFV  166 (384)
Q Consensus        87 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~  166 (384)
                      ++..|.--+..+++.+..  .+..    +...+..+..+|.+++ +.+.++|+..|.+++.. +...+..     ...++
T Consensus       219 ~~~LqlViVE~Irkv~~~--~p~~----~~~~i~~i~~lL~sts-saV~fEaa~tlv~lS~~-p~alk~A-----a~~~i  285 (948)
T KOG1058|consen  219 NDSLQLVIVELIRKVCLA--NPAE----KARYIRCIYNLLSSTS-SAVIFEAAGTLVTLSND-PTALKAA-----ASTYI  285 (948)
T ss_pred             cHHHHHHHHHHHHHHHhc--CHHH----hhHHHHHHHHHHhcCC-chhhhhhcceEEEccCC-HHHHHHH-----HHHHH
Confidence            455666666666665442  2222    2235777888998887 89999999999888774 4433322     33445


Q ss_pred             HhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhch
Q 016714          167 QLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPA  245 (384)
Q Consensus       167 ~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~  245 (384)
                      .++-. ++-.++-..+--|..+....   +. ++ .|.+--+++.| +.+|.++.+.++.....|.....      +..+
T Consensus       286 ~l~~kesdnnvklIvldrl~~l~~~~---~~-il-~~l~mDvLrvL-ss~dldvr~Ktldi~ldLvssrN------vedi  353 (948)
T KOG1058|consen  286 DLLVKESDNNVKLIVLDRLSELKALH---EK-IL-QGLIMDVLRVL-SSPDLDVRSKTLDIALDLVSSRN------VEDI  353 (948)
T ss_pred             HHHHhccCcchhhhhHHHHHHHhhhh---HH-HH-HHHHHHHHHHc-CcccccHHHHHHHHHHhhhhhcc------HHHH
Confidence            54433 23333333333444443211   11 22 23455567777 78888898888887777776532      1222


Q ss_pred             HHHHHHhh-c------cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 016714          246 LPILQRLI-H------LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD  318 (384)
Q Consensus       246 ~~~L~~lL-~------~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  318 (384)
                      +..|-+=+ .      .++...+.....++.+++..-++..     +.+++.|++.+.+.++......+..+.......+
T Consensus       354 v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p  428 (948)
T KOG1058|consen  354 VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP  428 (948)
T ss_pred             HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence            33332222 1      1235678888899999887766544     3468999999999888777777777776666555


Q ss_pred             HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 016714          319 AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRA  362 (384)
Q Consensus       319 ~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  362 (384)
                      .....+     +..|+.-+..-...++.+.|.|+++..+.+..+
T Consensus       429 ~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~~~~  467 (948)
T KOG1058|consen  429 NLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCEGLSE  467 (948)
T ss_pred             hHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHhhhHH
Confidence            544433     344444443332567889999999999986554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.91  E-value=0.026  Score=57.94  Aligned_cols=230  Identities=16%  Similarity=0.143  Sum_probs=140.6

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhC---CCCchh
Q 016714          119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAG---DSPSCR  195 (384)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~---~~~~~~  195 (384)
                      ++.+...+..-...+.+..|+..|..++....+.  ..+ .-++|+++.++.++...|+..|+.+|..+..   +-+..-
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de--~~L-DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d  500 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDE--VKL-DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD  500 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH--HHH-hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence            4555555555333678999999998887742221  122 2578999999999999999999999888753   333332


Q ss_pred             hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc------------------CCCCC------Ch----hhh-hchH
Q 016714          196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR------------------GKPPT------PF----EQV-KPAL  246 (384)
Q Consensus       196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~------------------~~~~~------~~----~~~-~~~~  246 (384)
                      ..+.....+|.|-.++.++....++...+..|..|+.                  +.++.      ..    ... ..+-
T Consensus       501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~  580 (1431)
T KOG1240|consen  501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE  580 (1431)
T ss_pred             chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence            3344444666666666432322233222222322221                  11111      00    111 2222


Q ss_pred             HHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH
Q 016714          247 PILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVID  326 (384)
Q Consensus       247 ~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~  326 (384)
                      ...+.+|..+++-|+...+..|.-||..-..   .=.+.-+++.|+.+|++.+..++..-...|.-++..-..+   -++
T Consensus       581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~s  654 (1431)
T KOG1240|consen  581 QMVSSLLSDSPPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SVS  654 (1431)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eHH
Confidence            3455666777777777777777777743110   0012246889999999988887776666655544321111   134


Q ss_pred             cCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          327 NGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       327 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .+++|.|.+-|.++ ++.|-..|..+|+-++.
T Consensus       655 eyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik  685 (1431)
T KOG1240|consen  655 EYLLPLLQQGLTDG-EEAVIVSALGSLSILIK  685 (1431)
T ss_pred             HHHHHHHHHhccCc-chhhHHHHHHHHHHHHH
Confidence            57899999999999 88899999999998886

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.90  E-value=0.063  Score=44.40  Aligned_cols=91  Identities=18%  Similarity=0.209  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCC-hHHHHHH
Q 016714          132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGA-LMPLLAQ  210 (384)
Q Consensus       132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~-i~~L~~~  210 (384)
                      |.++..++-+++.++...+.    +++ ..+|.+...|.++++.+|.+|+.+|..|...+.     +.-.|. +..++.+
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence            78999999999999875443    222 457899999999999999999999999985542     111222 3677777


Q ss_pred             hcccchhHHHHHHHHHHhhhhcC
Q 016714          211 LNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       211 l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      + .+++++++..|..++..+...
T Consensus        72 l-~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 L-VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHh
Confidence            7 788999999999999999887

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.033  Score=56.59  Aligned_cols=224  Identities=15%  Similarity=0.114  Sum_probs=131.8

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchh
Q 016714          117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCR  195 (384)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~  195 (384)
                      +++..|.+.|++.+ ..++--||..++.++...+..   +. ..++...+.++.- +++..-+.++.+|+.+|..+--.-
T Consensus       341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            56788888888888 799999999999999876622   22 2356666665554 457788899999999986543222


Q ss_pred             hHHHhcCChHHHHHHhccc-------chhHHHHHHHHHHhhhhcCC-CCCChhhhhchHHH-HHHhhccCCHhHHHHHHH
Q 016714          196 DLVLSSGALMPLLAQLNEH-------SKLSMLRNATWTLSNFCRGK-PPTPFEQVKPALPI-LQRLIHLNDEEVLTDACW  266 (384)
Q Consensus       196 ~~i~~~g~i~~L~~~l~~~-------~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~-L~~lL~~~~~~i~~~a~~  266 (384)
                      +.+.  .+++.++..|..+       ....++.++|++++.+++.. |..-...+..+.+. |...+...+-..+..|..
T Consensus       416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence            2222  2556666666322       23468888999999999876 32223333444443 334455666677777777


Q ss_pred             HHHHhccCChHHHHHHHHcCChHHHHHhc---CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHH-hccCCc
Q 016714          267 ALSYLSDGPNDKIQAVIEAGVCPRLVELL---MHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQL-LTQNHK  342 (384)
Q Consensus       267 ~l~~l~~~~~~~~~~~~~~g~~~~L~~lL---~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~l-l~~~~~  342 (384)
                      |+....-.          .|-+|.=+.+.   +.-+...+..+...+..-....+.....++++     +..- +.+- +
T Consensus       494 AlqE~VGR----------~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~HW-d  557 (1133)
T KOG1943|consen  494 ALQENVGR----------QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVCHW-D  557 (1133)
T ss_pred             HHHHHhcc----------CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccccc-c
Confidence            77654322          11111111112   22222334444555554444444444444432     2222 4455 7


Q ss_pred             hhHHHHHHHHHHHHhcCCHHH
Q 016714          343 KSIKKEACWTISNITAGNRAQ  363 (384)
Q Consensus       343 ~~v~~~a~~~L~nl~~~~~~~  363 (384)
                      ..+|+.++|+|.++....++.
T Consensus       558 ~~irelaa~aL~~Ls~~~pk~  578 (1133)
T KOG1943|consen  558 VKIRELAAYALHKLSLTEPKY  578 (1133)
T ss_pred             HHHHHHHHHHHHHHHHhhHHh
Confidence            788888888888876544443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.88  E-value=0.0029  Score=46.30  Aligned_cols=92  Identities=17%  Similarity=0.140  Sum_probs=68.0

Q ss_pred             HHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCC
Q 016714          220 LRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS  299 (384)
Q Consensus       220 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~  299 (384)
                      +..++++|+..+..-+.........++|.++..+..+|..++..||.+|.+++....+..-. .=..+++.|.+++.+++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPD   81 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCc
Confidence            34566777777776655555666889999999999999999999999999998764433211 11367888899999998


Q ss_pred             hhhHHHHHHHHHHh
Q 016714          300 ATVLIPALRTVGNI  313 (384)
Q Consensus       300 ~~v~~~a~~~l~nl  313 (384)
                      +.|+..| ..|-++
T Consensus        82 ~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   82 ENVRSAA-ELLDRL   94 (97)
T ss_pred             hhHHHHH-HHHHHH
Confidence            8887665 444443

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.84  E-value=0.039  Score=52.37  Aligned_cols=203  Identities=20%  Similarity=0.287  Sum_probs=119.2

Q ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCC-CCcHHHHHHcCCHHHHHHhh-cCCC---ChHHHHHHHHHHHHHhcCC
Q 016714           76 IPSMVQGVW-SEDPALQLEATTQFRKLLSIER-SPPIDEVIKAGVVPRFVEFL-GRHD---MPQLQFEAAWALTNVASGT  149 (384)
Q Consensus        76 l~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~i~~Lv~lL-~~~~---~~~~~~~a~~~L~nl~~~~  149 (384)
                      +..++.... +.++..+..+++.+.-++..-. .+..+     .++..+..-+ ...+   .+..-...+|+..-+.-.+
T Consensus       191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~  265 (415)
T PF12460_consen  191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD-----EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG  265 (415)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH-----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence            344444433 3456777778887776664311 11111     2233333333 1111   1233344455554443322


Q ss_pred             chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch-------------hhHHHhcCChHHHHHHhcccch
Q 016714          150 SEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC-------------RDLVLSSGALMPLLAQLNEHSK  216 (384)
Q Consensus       150 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------~~~i~~~g~i~~L~~~l~~~~~  216 (384)
                      .....     ..+..|+.+|.+  +++...++.+++-+..+.+.+             |+.+... .+|.|++.. ...+
T Consensus       266 ~~~~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~-~~~~  336 (415)
T PF12460_consen  266 HPLAT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGF-KEAD  336 (415)
T ss_pred             CchHH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHH-hhcC
Confidence            22111     235667778776  778899999999998873322             2222222 466666666 3334


Q ss_pred             hHHHHHHHHHHhhhhcCCCCCCh-hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHH
Q 016714          217 LSMLRNATWTLSNFCRGKPPTPF-EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVE  293 (384)
Q Consensus       217 ~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~  293 (384)
                      .+...+.+.+|+.+..+-|.... .....++|.+++.|..+|.+++..++.++..+....++....-+ ..+++.|++
T Consensus       337 ~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl-~sLI~~LL~  413 (415)
T PF12460_consen  337 DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL-SSLIPRLLK  413 (415)
T ss_pred             hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH-HHHHHHHHh
Confidence            44777888899999987653332 23378999999999999999999999999999887754433211 134555443

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.83  E-value=0.062  Score=46.61  Aligned_cols=100  Identities=15%  Similarity=0.090  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHh
Q 016714          133 QLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQL  211 (384)
Q Consensus       133 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l  211 (384)
                      .....|+.+|.-++--.+..+..+.+...+..|+.+|. ...+.++..++.+|..+..+++.+...+.+.+|+..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            44566788888888888999999999999999999995 46789999999999999999999999999999999999999


Q ss_pred             cccc-hhHHHHHHHHHHhhhhc
Q 016714          212 NEHS-KLSMLRNATWTLSNFCR  232 (384)
Q Consensus       212 ~~~~-~~~~~~~a~~~L~~L~~  232 (384)
                      .... +.++.-.+...|.-...
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHc
Confidence            6433 56666666655544443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.83  E-value=0.002  Score=48.48  Aligned_cols=72  Identities=17%  Similarity=0.275  Sum_probs=61.1

Q ss_pred             CChHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          286 GVCPRLVELL-MHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       286 g~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .++..|+.+| .+.++.+..-||.=||.++...|.....+-+.|+-..++.++.++ +++||.+|..++.-+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            3578899999 455778888899999999999898888888889999999999999 99999999999987764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=0.044  Score=54.47  Aligned_cols=226  Identities=11%  Similarity=0.070  Sum_probs=147.7

Q ss_pred             HHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHh
Q 016714          121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLS  200 (384)
Q Consensus       121 ~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~  200 (384)
                      ..+..+.++. +.++-.++..|..+... .+....+...+++...+..|++.++-+--.|+..+..+|.-.+        
T Consensus       731 eai~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------  800 (982)
T KOG4653|consen  731 EAISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------  800 (982)
T ss_pred             HHHHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------
Confidence            3444455555 78899999999999884 3555566677899999999999999888888888888875433        


Q ss_pred             cCChHHHHHHhcccc---hhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChH
Q 016714          201 SGALMPLLAQLNEHS---KLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPND  277 (384)
Q Consensus       201 ~g~i~~L~~~l~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~  277 (384)
                      ..+++.+.+...+..   .++.+-.+-.++.++.+...+........++..+......+|...+..++..++.||.....
T Consensus       801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~  880 (982)
T KOG4653|consen  801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF  880 (982)
T ss_pred             hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence            335666666442221   12333334466666666544444444456666777777888888899999999999875432


Q ss_pred             HHHHHHHcCChHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHHH---cCchHHHHHHhccCCchhHHHHHHHHH
Q 016714          278 KIQAVIEAGVCPRLVELL-MHPSATVLIPALRTVGNIVTGDDAQTQFVID---NGVLPCLYQLLTQNHKKSIKKEACWTI  353 (384)
Q Consensus       278 ~~~~~~~~g~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~---~g~l~~L~~ll~~~~~~~v~~~a~~~L  353 (384)
                      ...-.+ ..++..++.+. .+++..++..|+..+..+..+.....-.+..   .+....+.......++..++..|+.++
T Consensus       881 ~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l  959 (982)
T KOG4653|consen  881 QVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL  959 (982)
T ss_pred             hhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            222111 13344555555 3567789999999999998876644333332   234445555555554677888888777


Q ss_pred             HHHh
Q 016714          354 SNIT  357 (384)
Q Consensus       354 ~nl~  357 (384)
                      --+-
T Consensus       960 eei~  963 (982)
T KOG4653|consen  960 EEIQ  963 (982)
T ss_pred             HHHH
Confidence            5554

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.80  E-value=0.017  Score=57.67  Aligned_cols=187  Identities=19%  Similarity=0.169  Sum_probs=132.2

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH-------------HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 016714          119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT-------------RVVIEHGAVPMFVQLLSSGSDDVREQAVWALG  185 (384)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~-------------~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~  185 (384)
                      ...|+++|+.+   ++-..++.++.-+..+.+...             +.+. ..++|.|+..+.......+..-+.+|.
T Consensus       817 a~klld~Ls~~---~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  817 AEKLLDLLSGP---STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHHhcCCc---cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHH
Confidence            45566776653   344455566655555443322             2222 257899999998777788888899999


Q ss_pred             hhhCCCCchhhHHHh-c-CChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCC---HhH
Q 016714          186 NVAGDSPSCRDLVLS-S-GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLND---EEV  260 (384)
Q Consensus       186 nl~~~~~~~~~~i~~-~-g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~---~~i  260 (384)
                      ++..+-|.  ..+.. . ..+|.|++.| +-+|..++.....++.-+....+...-..+..++|.+..+=.+.|   ..+
T Consensus       893 hVl~~vP~--~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~V  969 (1030)
T KOG1967|consen  893 HVLTNVPK--QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVV  969 (1030)
T ss_pred             HHHhcCCH--HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHH
Confidence            98886663  23222 1 1344455666 677888989999999988887676777777889999888776655   568


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714          261 LTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN  312 (384)
Q Consensus       261 ~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (384)
                      +..|+.++..|+..-+...-.-....++..|.+.|+++.-.+|..|.++=++
T Consensus       970 R~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  970 REDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred             HHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence            9999999999998433333233455789999999999988899999877544

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.75  E-value=0.24  Score=44.86  Aligned_cols=191  Identities=19%  Similarity=0.190  Sum_probs=115.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhc--CChHHHHHHhcccchhHHHHHHHHHHhhhhcC--CCCC
Q 016714          162 VPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSS--GALMPLLAQLNEHSKLSMLRNATWTLSNFCRG--KPPT  237 (384)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~--g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~--~~~~  237 (384)
                      +...+..+.+.+...|+.++..+.++...... .+.+...  ..+..+.+.+++... +-+..++.++.-+|-.  ....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCcc
Confidence            33445555566688888888888887754432 2332221  135556666644443 3345566666666554  3345


Q ss_pred             ChhhhhchHHHHHHhhccCC--HhHHHHHHHHHHHhc---cCChHHHHHHHHcCChH--HHHHhcCC----------CCh
Q 016714          238 PFEQVKPALPILQRLIHLND--EEVLTDACWALSYLS---DGPNDKIQAVIEAGVCP--RLVELLMH----------PSA  300 (384)
Q Consensus       238 ~~~~~~~~~~~L~~lL~~~~--~~i~~~a~~~l~~l~---~~~~~~~~~~~~~g~~~--~L~~lL~~----------~~~  300 (384)
                      .......+.|.|.+.+....  ..++..++.+|+-++   ..+.+.+...++  .+.  .....++.          +++
T Consensus       123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            55666888899999887554  455566665665544   334333332111  223  11222221          235


Q ss_pred             hhHHHHHHHHHHhhcCChH-HHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          301 TVLIPALRTVGNIVTGDDA-QTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       301 ~v~~~a~~~l~nl~~~~~~-~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .+...|+.+.+-+.+.-+. ...... ...++.|..+|.++ +..||..|.-+|.-|..
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            6889999999999876554 223222 34689999999999 99999998888876654

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.73  E-value=0.0027  Score=58.64  Aligned_cols=153  Identities=18%  Similarity=0.238  Sum_probs=91.2

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhc----CCch---hHHHHHhcCChHHHHHhh---cCCCHHHHHHHHHHHHh
Q 016714          117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVAS----GTSE---HTRVVIEHGAVPMFVQLL---SSGSDDVREQAVWALGN  186 (384)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~----~~~~---~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~n  186 (384)
                      .........|.+.. -..|..++|.++||+.    +.+.   +...+.. -.+..++..-   ...+..++..+..+|+|
T Consensus       433 ~aa~~il~sl~d~~-ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgn  510 (728)
T KOG4535|consen  433 DAANAILMSLEDKS-LNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGN  510 (728)
T ss_pred             HHHHHHHHHhhhHh-HhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhh
Confidence            33444455555544 5789999999999976    2222   2222221 1122222221   12668899999999999


Q ss_pred             hhCC-----CCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC--CCChhhhhchHHHHHHhh-ccCCH
Q 016714          187 VAGD-----SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP--PTPFEQVKPALPILQRLI-HLNDE  258 (384)
Q Consensus       187 l~~~-----~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~~~~~~~L~~lL-~~~~~  258 (384)
                      +..-     .+.++.  ...|.+..++....-...-.+++++|++++||..+..  -........+++.|..++ ++.|-
T Consensus       511 llQvlq~i~~~~~~e--~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NF  588 (728)
T KOG4535|consen  511 LLQFLQPIEKPTFAE--IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNF  588 (728)
T ss_pred             HHHHHHHhhhccHHH--HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccc
Confidence            8631     111211  1122233333322222356789999999999999852  223334466788888877 45678


Q ss_pred             hHHHHHHHHHHHhcc
Q 016714          259 EVLTDACWALSYLSD  273 (384)
Q Consensus       259 ~i~~~a~~~l~~l~~  273 (384)
                      .++..|+.+|..-..
T Consensus       589 KVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  589 KVRIRAAAALSVPGK  603 (728)
T ss_pred             eEeehhhhhhcCCCC
Confidence            889998888877654

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.73  E-value=0.24  Score=47.33  Aligned_cols=141  Identities=17%  Similarity=0.196  Sum_probs=84.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhh
Q 016714          162 VPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQ  241 (384)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  241 (384)
                      .|.|-..|++.-+.+.-.++.++..++..+-  -+.+.+. .+..|-.+| .......+-.|..+|..|+...|...   
T Consensus       266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~~-~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv---  338 (898)
T COG5240         266 RPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVDQ-TVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKV---  338 (898)
T ss_pred             HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHHH-HHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCcee---
Confidence            3566667777667777778877777765441  1222221 344555555 56667778888999999988766432   


Q ss_pred             hhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714          242 VKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV  314 (384)
Q Consensus       242 ~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (384)
                       .-+-+-+-.++.+.+..+..+|...|..  .+.++.++.+++  .++.++.=+.++-..+...|++.|++.-
T Consensus       339 -~vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rsLsl~F  406 (898)
T COG5240         339 -SVCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRSLSLLF  406 (898)
T ss_pred             -eecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHH--HHHHHHHhhccCceEEeHHHHHHHHhhC
Confidence             2333445556666666666666655544  345555555543  3555555555555556666777776654

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.69  E-value=0.11  Score=52.45  Aligned_cols=238  Identities=17%  Similarity=0.136  Sum_probs=136.8

Q ss_pred             CCHHHHHHhhc------CC-CChHHHHHHHHHHHHHhcC--CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhh
Q 016714          117 GVVPRFVEFLG------RH-DMPQLQFEAAWALTNVASG--TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV  187 (384)
Q Consensus       117 g~i~~Lv~lL~------~~-~~~~~~~~a~~~L~nl~~~--~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl  187 (384)
                      |+++.+++.|.      .+ +++.-+..|+++++++++-  ....-+...+.-.++.+.-.++++..-++..|+|.++.+
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            56777777776      22 2366778889999998851  111112233344566777778888899999999999999


Q ss_pred             hCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCC---ChhhhhchHHHHHHhhccCCHhHHHHH
Q 016714          188 AGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT---PFEQVKPALPILQRLIHLNDEEVLTDA  264 (384)
Q Consensus       188 ~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~~~~~~L~~lL~~~~~~i~~~a  264 (384)
                      +..+-.  +...-..++....+.|..+.+..++..|+.+|.-+..+.+..   ....+.+.+..|+++....+.+.+..+
T Consensus       490 ~~~df~--d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v  567 (1010)
T KOG1991|consen  490 SSIDFK--DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV  567 (1010)
T ss_pred             HhccCC--ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence            943321  222223366777788866778889999999999988875322   122234555556666666566666665


Q ss_pred             HHHH-HHhccCChHHHHHHHHcCChHHHHHhcCC---CCh---hhHHHHHHHHHH---hhcC---ChHHHHHHHHcCchH
Q 016714          265 CWAL-SYLSDGPNDKIQAVIEAGVCPRLVELLMH---PSA---TVLIPALRTVGN---IVTG---DDAQTQFVIDNGVLP  331 (384)
Q Consensus       265 ~~~l-~~l~~~~~~~~~~~~~~g~~~~L~~lL~~---~~~---~v~~~a~~~l~n---l~~~---~~~~~~~i~~~g~l~  331 (384)
                      +..+ +..+..-......+. ..+.....+++..   .++   .=...|.++|..   |...   .++.... +..-+++
T Consensus       568 me~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~-le~~~l~  645 (1010)
T KOG1991|consen  568 MEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ-LEPIVLP  645 (1010)
T ss_pred             HHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHH
Confidence            5544 333322111111111 1334455555542   111   112233333333   3221   2222221 2335677


Q ss_pred             HHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714          332 CLYQLLTQNHKKSIKKEACWTISNITAG  359 (384)
Q Consensus       332 ~L~~ll~~~~~~~v~~~a~~~L~nl~~~  359 (384)
                      .+-.+|.+. -.++-++++-.+.+++.-
T Consensus       646 vi~~iL~~~-i~dfyeE~~ei~~~~t~~  672 (1010)
T KOG1991|consen  646 VIGFILKND-ITDFYEELLEIVSSLTFL  672 (1010)
T ss_pred             HHHHHHHHh-hHHHHHHHHHHHhhhhhh
Confidence            777777777 677778887777777753

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.69  E-value=0.037  Score=44.11  Aligned_cols=125  Identities=13%  Similarity=0.121  Sum_probs=96.1

Q ss_pred             HHHHHHcCCHHHHHHhhcCCCC-----hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCC--CHHHHHHHHH
Q 016714          110 IDEVIKAGVVPRFVEFLGRHDM-----PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG--SDDVREQAVW  182 (384)
Q Consensus       110 ~~~~~~~g~i~~Lv~lL~~~~~-----~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~  182 (384)
                      ..+++..|+++.|++++.++..     .++...++.++..+..+. ......+....|..++.+....  +..+.+.|+.
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            4678899999999999987662     366677888888887753 3333455556677777777653  5889999999


Q ss_pred             HHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714          183 ALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP  236 (384)
Q Consensus       183 ~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~  236 (384)
                      .|-++...++.....+.+.=-++.|+..| +.++.+++.++...+-.|....+.
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hL-q~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHL-QVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCh
Confidence            99999998887667777666688899999 668889999999888877776543

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.046  Score=54.35  Aligned_cols=193  Identities=12%  Similarity=0.099  Sum_probs=127.7

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      +.+...+..++++.+.++-.|++.++.++..  ......+...+++..+++.|++.+ +-+-..|...+..+|.-     
T Consensus       727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~--r~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcev-----  798 (982)
T KOG4653|consen  727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEK--RKKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEV-----  798 (982)
T ss_pred             HHHHHHHHHhcCCcccchHHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHh-----
Confidence            4467778888888889999999999999863  255555667899999999999988 78888888888888763     


Q ss_pred             HHHHhcCChHHHHHhhcCCC----HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714          154 RVVIEHGAVPMFVQLLSSGS----DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN  229 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~  229 (384)
                         ....++|-|...-.+..    ++.+-..-.++++++....+.-..-.. -.+..++..+ .+++...+..++..+.+
T Consensus       799 ---y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gv-repd~~~RaSS~a~lg~  873 (982)
T KOG4653|consen  799 ---YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGV-REPDHEFRASSLANLGQ  873 (982)
T ss_pred             ---cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhc-CCchHHHHHhHHHHHHH
Confidence               34467888887443311    233333336666665322211000001 1334444555 45566778899999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCC-HhHHHHHHHHHHHhccCChHHH
Q 016714          230 FCRGKPPTPFEQVKPALPILQRLIHLND-EEVLTDACWALSYLSDGPNDKI  279 (384)
Q Consensus       230 L~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~i~~~a~~~l~~l~~~~~~~~  279 (384)
                      ||..........+..++..++.+...++ ..++..|...+..+..+.....
T Consensus       874 Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl  924 (982)
T KOG4653|consen  874 LCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL  924 (982)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence            9986533333455667777777766554 6678888888888877654433

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.66  E-value=0.15  Score=49.32  Aligned_cols=267  Identities=16%  Similarity=0.193  Sum_probs=124.6

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      .++..++.++.++|..++..|++.|-.++..+ .+.+..     ++..|+++|.+++ +.-...+-++|..+...++.  
T Consensus        59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~k-----vaDvL~QlL~tdd-~~E~~~v~~sL~~ll~~d~k--  129 (556)
T PF05918_consen   59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSK-----VADVLVQLLQTDD-PVELDAVKNSLMSLLKQDPK--  129 (556)
T ss_dssp             HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHH-----HHHHHHHHTT----HHHHHHHHHHHHHHHHH-HH--
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhH-----HHHHHHHHHhccc-HHHHHHHHHHHHHHHhcCcH--
Confidence            36777888888888888888888888775543 444444     4677888888776 66666666666666553332  


Q ss_pred             HHHHhcCChHHHHHhhc---CCCHHHHHHHHHHHHh-hhCCCCc-hh--hHHHhcCChHHHHHHhcccchhHHHHHHHHH
Q 016714          154 RVVIEHGAVPMFVQLLS---SGSDDVREQAVWALGN-VAGDSPS-CR--DLVLSSGALMPLLAQLNEHSKLSMLRNATWT  226 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~n-l~~~~~~-~~--~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~  226 (384)
                            +.+..+...+.   ++++.+++.++..|.. +..-.+. ..  .. .+.-++..+-+.|.+-...+ ......+
T Consensus       130 ------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E-~e~~i~~~ikkvL~DVTaeE-F~l~m~l  201 (556)
T PF05918_consen  130 ------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKE-MEEFIVDEIKKVLQDVTAEE-FELFMSL  201 (556)
T ss_dssp             ------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HH-HHHHHHHHHHHHCTT--HHH-HHHHHHH
T ss_pred             ------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHH-HHHHHHHHHHHHHHhccHHH-HHHHHHH
Confidence                  22334444333   4567788888876643 2211111 11  11 11112333444442212222 2233344


Q ss_pred             HhhhhcCCCCCChhhhhchHHHHHHhh------ccCCHhHHHHHHHHH----HHhccCCh--HHHHHHHHcCChHHHHHh
Q 016714          227 LSNFCRGKPPTPFEQVKPALPILQRLI------HLNDEEVLTDACWAL----SYLSDGPN--DKIQAVIEAGVCPRLVEL  294 (384)
Q Consensus       227 L~~L~~~~~~~~~~~~~~~~~~L~~lL------~~~~~~i~~~a~~~l----~~l~~~~~--~~~~~~~~~g~~~~L~~l  294 (384)
                      |..+-.........-...+++.+....      ...|++.....+.|+    -+++.+..  .....+. ..++|.+-.+
T Consensus       202 L~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~-~kvlP~l~~l  280 (556)
T PF05918_consen  202 LKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMC-EKVLPKLSDL  280 (556)
T ss_dssp             HHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHH-HHTCCCTT--
T ss_pred             HHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHH-HHhcCChhhC
Confidence            444443211112222234445444322      334555554444433    33343322  2222222 2355544443


Q ss_pred             cCCCChhhHHHHHHHHHHhhcCChHH-HHHHHHcCchHHHHHHhc----cCC-----chhHHHHHHHHHHHHhcCCHHHH
Q 016714          295 LMHPSATVLIPALRTVGNIVTGDDAQ-TQFVIDNGVLPCLYQLLT----QNH-----KKSIKKEACWTISNITAGNRAQI  364 (384)
Q Consensus       295 L~~~~~~v~~~a~~~l~nl~~~~~~~-~~~i~~~g~l~~L~~ll~----~~~-----~~~v~~~a~~~L~nl~~~~~~~i  364 (384)
                          ....+...+++++-++...... ..     ..++.+..+|.    ...     +....+...+++++++...++..
T Consensus       281 ----~e~~kl~lLk~lAE~s~~~~~~d~~-----~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~~  351 (556)
T PF05918_consen  281 ----PEDRKLDLLKLLAELSPFCGAQDAR-----QLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPNSL  351 (556)
T ss_dssp             -------HHHHHHHHHHHHHTT----THH-----HHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-THHH
T ss_pred             ----ChHHHHHHHHHHHHHcCCCCcccHH-----HHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcchh
Confidence                4567888999999998654311 12     23344444442    110     23556778899999999888765


Q ss_pred             HHH
Q 016714          365 QVH  367 (384)
Q Consensus       365 ~~l  367 (384)
                      ..+
T Consensus       352 ~~l  354 (556)
T PF05918_consen  352 NFL  354 (556)
T ss_dssp             H--
T ss_pred             hhH
Confidence            555

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.64  E-value=0.0039  Score=47.01  Aligned_cols=71  Identities=15%  Similarity=0.284  Sum_probs=60.7

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhh
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA  188 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  188 (384)
                      ++..|+++|..++++.....||.=|+.++...|..+..+-+.|+=..++.++.+++++|+.+|+.|+..+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            58889999965444888889999999999988999998888999999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.64  E-value=0.019  Score=39.35  Aligned_cols=67  Identities=15%  Similarity=0.263  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCC
Q 016714          303 LIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFH  371 (384)
Q Consensus       303 ~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~  371 (384)
                      .+.|+|++|++++ .+.....+.+.++++.++++..+.+...+|-.|.++|+-++. +.+-.+.+-+.|
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            5689999999987 555666667789999999999987677888888888887776 666666666554

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.59  E-value=0.17  Score=50.02  Aligned_cols=260  Identities=17%  Similarity=0.181  Sum_probs=126.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH-
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR-  154 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~-  154 (384)
                      .+.+-+.+.+....+.++|++++..+-.    ...+.+..  .+..|-.+++++. +.+|+.|.++|..+|...+.... 
T Consensus       247 ~~fl~s~l~~K~emV~~EaArai~~l~~----~~~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~~  319 (865)
T KOG1078|consen  247 FPFLESCLRHKSEMVIYEAARAIVSLPN----TNSRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVTV  319 (865)
T ss_pred             HHHHHHHHhchhHHHHHHHHHHHhhccc----cCHhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCccccc
Confidence            4455556677788899999998886632    23333322  6778888889988 89999999999998875443211 


Q ss_pred             -------HHHhcC---ChHHHHHhhcCCCH----HHHHHHHHHHHhhhCCCCch-----hhHH-----HhcCChHHHHHH
Q 016714          155 -------VVIEHG---AVPMFVQLLSSGSD----DVREQAVWALGNVAGDSPSC-----RDLV-----LSSGALMPLLAQ  210 (384)
Q Consensus       155 -------~i~~~g---~i~~L~~lL~~~~~----~v~~~a~~~L~nl~~~~~~~-----~~~i-----~~~g~i~~L~~~  210 (384)
                             .+-+.+   +...+..+|+....    .+..+.....++++.+..-.     +..+     ...+.+.-|.++
T Consensus       320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~  399 (865)
T KOG1078|consen  320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM  399 (865)
T ss_pred             cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence                   111111   22333444443322    23333333333333222100     0000     001112222233


Q ss_pred             hcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHH
Q 016714          211 LNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPR  290 (384)
Q Consensus       211 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~  290 (384)
                      |.+....+..++..-++..+....|....    .++..|..++.  |-+....+.++|+-|....+..   ......+..
T Consensus       400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe----~~L~~LCefIE--Dce~~~i~~rILhlLG~EgP~a---~~Pskyir~  470 (865)
T KOG1078|consen  400 LREEGGFEFKRAIVDAIIDIIEENPDSKE----RGLEHLCEFIE--DCEFTQIAVRILHLLGKEGPKA---PNPSKYIRF  470 (865)
T ss_pred             HHhccCchHHHHHHHHHHHHHHhCcchhh----HHHHHHHHHHH--hccchHHHHHHHHHHhccCCCC---CCcchhhHH
Confidence            32222233333333333333332211111    11122222221  1112222223333332211100   001112222


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714          291 LVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT  357 (384)
Q Consensus       291 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  357 (384)
                      +...+-=.+..++..|..++.++..+++...     ..+.-.|.+.+.+. +.++|..|.+.+.++-
T Consensus       471 iyNRviLEn~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~-DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  471 IYNRVILENAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDS-DDEVRDRATFYLKNLE  531 (865)
T ss_pred             HhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCc-hHHHHHHHHHHHHHhh
Confidence            3322223456788889999999886554332     23555677888888 8999999999999988

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.42  Score=50.85  Aligned_cols=287  Identities=17%  Similarity=0.185  Sum_probs=150.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      +|+|.+.=.+++..+|..-..... .+-.+....++... ..++.-|+.-|.+.. ..+|+.+|-+|..+..+.+.  ..
T Consensus      1000 IPrLyRY~yDP~~~Vq~aM~sIW~-~Li~D~k~~vd~y~-neIl~eLL~~lt~ke-wRVReasclAL~dLl~g~~~--~~ 1074 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMTSIWN-ALITDSKKVVDEYL-NEILDELLVNLTSKE-WRVREASCLALADLLQGRPF--DQ 1074 (1702)
T ss_pred             hHHHhhhccCCcHHHHHHHHHHHH-HhccChHHHHHHHH-HHHHHHHHHhccchh-HHHHHHHHHHHHHHHcCCCh--HH
Confidence            555555556777777665444444 44332122233322 345666777777666 89999999999999886332  22


Q ss_pred             HHhcCChHHHHH----hhcCCCHHHH---HHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc----ccchhHHHHHHH
Q 016714          156 VIEHGAVPMFVQ----LLSSGSDDVR---EQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN----EHSKLSMLRNAT  224 (384)
Q Consensus       156 i~~~g~i~~L~~----lL~~~~~~v~---~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~----~~~~~~~~~~a~  224 (384)
                      +.+  -+|.+..    .+.+=.+.+|   +.++.+|+.++........-.-...++..++.+|.    -+.-.++++.+.
T Consensus      1075 ~~e--~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si 1152 (1702)
T KOG0915|consen 1075 VKE--KLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSI 1152 (1702)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence            222  1333332    2223223444   45677788876321111000011113344444442    244577899999


Q ss_pred             HHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhc------------cCCh--HHHHHHH-------
Q 016714          225 WTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLS------------DGPN--DKIQAVI-------  283 (384)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~------------~~~~--~~~~~~~-------  283 (384)
                      .++..|+...+..-......++|.|......-.+.+..+...=+.+.-            ...+  +.+...+       
T Consensus      1153 ~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~v 1232 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISV 1232 (1702)
T ss_pred             HHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHH
Confidence            999999988655444444666677766666555555433221111111            1110  0000000       


Q ss_pred             HcCChHHHHHhcCCC-ChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CC
Q 016714          284 EAGVCPRLVELLMHP-SATVLIPALRTVGNIVTGDD-AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GN  360 (384)
Q Consensus       284 ~~g~~~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~  360 (384)
                      -...+|.+.+++..+ .-..+..+...+.-++.... +.+.+  .-.++..+...+.+. ++.+++.-+.+.+.++. .+
T Consensus      1233 Leelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~--sgKll~al~~g~~dR-Nesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1233 LEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY--SGKLLRALFPGAKDR-NESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred             HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc--hhHHHHHHhhccccc-cHHHHHHHHHHHHHHHhcCC
Confidence            012344555554332 22233344444444432111 00000  012455566666776 88999999999999997 78


Q ss_pred             HHHHHHHHhCCc
Q 016714          361 RAQIQVHDSFHL  372 (384)
Q Consensus       361 ~~~i~~l~~~~~  372 (384)
                      +++.+.+++.-+
T Consensus      1310 ~dq~qKLie~~l 1321 (1702)
T KOG0915|consen 1310 PDQMQKLIETLL 1321 (1702)
T ss_pred             hHHHHHHHHHHH
Confidence            889998887544

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.22  Score=51.50  Aligned_cols=222  Identities=13%  Similarity=0.098  Sum_probs=138.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc---CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc-hhHHHHHhc
Q 016714           84 WSEDPALQLEATTQFRKLLSIERSPPIDEVIKA---GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS-EHTRVVIEH  159 (384)
Q Consensus        84 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~---g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~-~~~~~i~~~  159 (384)
                      ++++..+|..+-+.|..++..   +....+...   .+...|.+-+++.. ...+...+.||..|-...+ +....+.. 
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~-~~~~~~rl~~L~~L~~~~~~e~~~~i~k-  738 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSS-SPAQASRLKCLKRLLKLLSAEHCDLIPK-  738 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccHHHHHHHHH-
Confidence            355788999999999988764   444444433   23445555555555 5778888888888776545 44444443 


Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHhhhC-----CCCchhhHHHhcCChHHHHHHhccc--chhHHHHHH-HHHHhhhh
Q 016714          160 GAVPMFVQLLSSGSDDVREQAVWALGNVAG-----DSPSCRDLVLSSGALMPLLAQLNEH--SKLSMLRNA-TWTLSNFC  231 (384)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-----~~~~~~~~i~~~g~i~~L~~~l~~~--~~~~~~~~a-~~~L~~L~  231 (384)
                       .|+-++-.++..+...++.+..+|..|+.     +...-+    ....++.++..+...  .+....... +-++..+.
T Consensus       739 -~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~----~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  739 -LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP----ASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             -HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc----hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence             35555555577888888888888877762     110000    011455555555322  222222222 33344333


Q ss_pred             cCC-CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714          232 RGK-PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV  310 (384)
Q Consensus       232 ~~~-~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l  310 (384)
                      ... .........+++..+..+|.++.++++..|+..+.-++..-++..-.-....+++.+..++.+..-.++..+-..+
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Ll  893 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLL  893 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            332 3445566678888888899999999999999999888877554332222334788888887777777877777777


Q ss_pred             HHhhc
Q 016714          311 GNIVT  315 (384)
Q Consensus       311 ~nl~~  315 (384)
                      -.++.
T Consensus       894 ekLir  898 (1176)
T KOG1248|consen  894 EKLIR  898 (1176)
T ss_pred             HHHHH
Confidence            77653

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.39  Score=49.28  Aligned_cols=148  Identities=18%  Similarity=0.189  Sum_probs=89.6

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .++.+.+.+.+.|..++-.|+..+.++.+.-  |  ..+ ...++...++++...+.+..=..|+-+|+.++...----.
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rl--p--~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRL--P--PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccC--c--HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            4677777888899999999999999998864  2  111 2234666666665544245555788888888773211111


Q ss_pred             HHHhcCChHHHHHhhc--------CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHh----cccchhHHHHH
Q 016714          155 VVIEHGAVPMFVQLLS--------SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQL----NEHSKLSMLRN  222 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~--------~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l----~~~~~~~~~~~  222 (384)
                      .+.  .++|.++.-|.        +....||..|+++++.++......   -++ +.+..|...|    .-+.+..+++.
T Consensus       417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~---~l~-p~l~~L~s~LL~~AlFDrevncRRA  490 (1133)
T KOG1943|consen  417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS---DLK-PVLQSLASALLIVALFDREVNCRRA  490 (1133)
T ss_pred             HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh---hhh-HHHHHHHHHHHHHHhcCchhhHhHH
Confidence            111  24555555443        234679999999999998654321   011 1222222222    14556778888


Q ss_pred             HHHHHhhhhcC
Q 016714          223 ATWTLSNFCRG  233 (384)
Q Consensus       223 a~~~L~~L~~~  233 (384)
                      |..++-.....
T Consensus       491 AsAAlqE~VGR  501 (1133)
T KOG1943|consen  491 ASAALQENVGR  501 (1133)
T ss_pred             HHHHHHHHhcc
Confidence            88888766544

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.55  E-value=0.27  Score=41.92  Aligned_cols=144  Identities=14%  Similarity=0.179  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----ChHHHHHHHHHHHHHhcCCc-hhHHHHHhcCCh
Q 016714           88 PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD----MPQLQFEAAWALTNVASGTS-EHTRVVIEHGAV  162 (384)
Q Consensus        88 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~~~~~a~~~L~nl~~~~~-~~~~~i~~~g~i  162 (384)
                      +.-...|+..+.-++|.  .+....++++.+=-.|-.+|..++    .+-++..++.+++.+...++ +....+...+++
T Consensus        93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV  170 (293)
T KOG3036|consen   93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV  170 (293)
T ss_pred             cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence            44455666666666663  677778888886667777876432    26789999999999887544 455667778999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcC-------ChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          163 PMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSG-------ALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g-------~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      |..++.+..+++.-+..|.+++..|..++......+....       .+..++..+.+.++..+..++..+..+|+.+
T Consensus       171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999988765432222111       2334444444667788899999999999987

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.48  E-value=0.069  Score=48.20  Aligned_cols=169  Identities=17%  Similarity=0.195  Sum_probs=107.2

Q ss_pred             HHHHH-HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC-chhH
Q 016714           76 IPSMV-QGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGT-SEHT  153 (384)
Q Consensus        76 l~~lv-~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~-~~~~  153 (384)
                      +..++ ..+++.++.++..|++++.-..-.+ .....     ..++.+...++.++ +.++..|+.++..+.... ....
T Consensus        28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld-~~~a~-----~~l~l~~~~~~~~~-~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   28 LDSLILPAVQSSDPAVRELALKCLGLCCLLD-KELAK-----EHLPLFLQALQKDD-EEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-hHHHH-----HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCchhc
Confidence            34444 6788999999999999999665544 22221     23777888886666 899999999999876521 1111


Q ss_pred             HHHH-------hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHh-cc--cchhHHHHHH
Q 016714          154 RVVI-------EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQL-NE--HSKLSMLRNA  223 (384)
Q Consensus       154 ~~i~-------~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l-~~--~~~~~~~~~a  223 (384)
                      ....       ....+..+.+.+.+.+++++..|+..++.|.-.+.-. +   ....+..|+-.. ..  ..+..++...
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~-~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L  176 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRIS-D---PPKVLSRLLLLYFNPSTEDNQRLRQCL  176 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCC-c---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence            1111       2346778888889999999999999999986443211 1   012233333222 11  1245677777


Q ss_pred             HHHHhhhhcCCCCCChhhhhchHHHHHHhhcc
Q 016714          224 TWTLSNFCRGKPPTPFEQVKPALPILQRLIHL  255 (384)
Q Consensus       224 ~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~  255 (384)
                      .+.+-..|...+.........++|.+..+...
T Consensus       177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            77777777765444444446666776666644

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.44  E-value=0.14  Score=47.61  Aligned_cols=185  Identities=12%  Similarity=0.098  Sum_probs=118.0

Q ss_pred             HHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           77 PSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        77 ~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      ..++..+.+. ..+.+..|+..|..+++...-.-+++.. ..++..+++.|.+..++.++..|+++|..++...+.....
T Consensus       289 ~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D  367 (516)
T KOG2956|consen  289 ADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD  367 (516)
T ss_pred             HHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence            3344444443 4677788888899888765222333322 3457778888887443899999999999998854432222


Q ss_pred             HHhcCChHHHHHhhcCCCHHHHHHHHHH-HHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714          156 VIEHGAVPMFVQLLSSGSDDVREQAVWA-LGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~-L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~  234 (384)
                      -.+ -+|..+++.-.+..+++...|..+ +.-++...|..        .|..+..++ ...|......++..+..++..-
T Consensus       368 stE-~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~I-lt~D~~~~~~~iKm~Tkl~e~l  437 (516)
T KOG2956|consen  368 STE-IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLI-LTADEPRAVAVIKMLTKLFERL  437 (516)
T ss_pred             hHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHH-hcCcchHHHHHHHHHHHHHhhc
Confidence            221 245556666566667666666654 44455555531        223344444 3356666677777888888764


Q ss_pred             CCCC-hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 016714          235 PPTP-FEQVKPALPILQRLIHLNDEEVLTDACWALSYLS  272 (384)
Q Consensus       235 ~~~~-~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~  272 (384)
                      +... ...+..+.|.+++...+.+..++..+..||..+.
T Consensus       438 ~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  438 SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence            3222 2334778888899999999999999999998874

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.43  E-value=0.89  Score=46.38  Aligned_cols=238  Identities=18%  Similarity=0.218  Sum_probs=141.7

Q ss_pred             HcCCHHHHHHhhcCCC----ChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc----CCC----HHHHHHHHH
Q 016714          115 KAGVVPRFVEFLGRHD----MPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS----SGS----DDVREQAVW  182 (384)
Q Consensus       115 ~~g~i~~Lv~lL~~~~----~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~----~~~----~~v~~~a~~  182 (384)
                      +.|++..++.++.+-.    ...+....+..|..++. -..+++.+++.|+++.|+..+.    .+.    ..+.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            4688999999887522    13455556667766666 4899999999999999998774    333    678888877


Q ss_pred             HHHhhhCCCCc--hh--hHHHhc--------CChHHHHHHhccc---chhHHHHHHHHHHhhhhcCCCCCChhhhhchHH
Q 016714          183 ALGNVAGDSPS--CR--DLVLSS--------GALMPLLAQLNEH---SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALP  247 (384)
Q Consensus       183 ~L~nl~~~~~~--~~--~~i~~~--------g~i~~L~~~l~~~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~  247 (384)
                      ++..+..+-..  ..  ......        .-+..+++.+...   .++.+....+..|-+|+.+.+......+..+-|
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p  273 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKP  273 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHH
Confidence            77776532211  00  000111        1266677777432   357789999999999999864433333333333


Q ss_pred             HHHHhh-----ccCCHhHHHHHHHHHHHhccC----C--hHHHHHHHHcCChHHHHHhcCCCC--------h--------
Q 016714          248 ILQRLI-----HLNDEEVLTDACWALSYLSDG----P--NDKIQAVIEAGVCPRLVELLMHPS--------A--------  300 (384)
Q Consensus       248 ~L~~lL-----~~~~~~i~~~a~~~l~~l~~~----~--~~~~~~~~~~g~~~~L~~lL~~~~--------~--------  300 (384)
                      ++ ++=     ++.+..+.   +.+++.++.+    .  ....+.+++.|++...+.+|...-        +        
T Consensus       274 ~l-~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~  349 (802)
T PF13764_consen  274 YL-DFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR  349 (802)
T ss_pred             hc-ChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence            22 111     11122232   3344444332    2  355677899999999888884321        1        


Q ss_pred             hhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       301 ~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      +-...+++.|.-++.+... ++..+..++++.+..+=+-+.+..|-.-|--+|-.+..
T Consensus       350 psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  350 PSLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             CcHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            2235577788888876543 44557778887666665433234444444444444444

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.052  Score=57.18  Aligned_cols=219  Identities=16%  Similarity=0.169  Sum_probs=130.0

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL  197 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (384)
                      .|-.++++-++.-...-+..|++-++.|+...-+..+.... ..||.|.++=.+++..|+.....+...|..|+...-+.
T Consensus       957 LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~-kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~ 1035 (1702)
T KOG0915|consen  957 LVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLK-KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDE 1035 (1702)
T ss_pred             HHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHH-HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHH
Confidence            44555555554433455667888888888754333333333 47888988888999999888877777788887655554


Q ss_pred             HHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhh-hhchHHHHHHhhccCCHhHH---HHHHHHHHHhcc
Q 016714          198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQ-VKPALPILQRLIHLNDEEVL---TDACWALSYLSD  273 (384)
Q Consensus       198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~i~---~~a~~~l~~l~~  273 (384)
                      .+. .++..|+.-+ .+....+++.+|.+|..|.++.|...... +..+-..+.+....-.+.++   ..++.+|+.+|.
T Consensus      1036 y~n-eIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1036 YLN-EILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred             HHH-HHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            443 2666666666 56667899999999999999865432211 12222222333322223344   446667777664


Q ss_pred             CChHHHHHHHHcCChHHHHHhc-----CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC
Q 016714          274 GPNDKIQAVIEAGVCPRLVELL-----MHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN  340 (384)
Q Consensus       274 ~~~~~~~~~~~~g~~~~L~~lL-----~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~  340 (384)
                      ..-+.....-...++..+++.|     .+.-++++..++.++..++..........+ ..++|.|......-
T Consensus      1114 r~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1114 RICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSEL 1184 (1702)
T ss_pred             hhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHcccc
Confidence            2111111111112233444443     244578899999999999877665443222 24566666666554

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.29  E-value=0.092  Score=45.58  Aligned_cols=102  Identities=16%  Similarity=0.128  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh
Q 016714           89 ALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL  168 (384)
Q Consensus        89 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l  168 (384)
                      .....|++.|.-++-.. ++....+-+...+..|+.+|+....+.++..++.+|..+.-+++.+...+-+.+++..++.+
T Consensus       106 ~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             HHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            34555778888776664 56666677889999999999665558999999999999999999999999999999999999


Q ss_pred             hcC--CCHHHHHHHHHHHHhhhCCC
Q 016714          169 LSS--GSDDVREQAVWALGNVAGDS  191 (384)
Q Consensus       169 L~~--~~~~v~~~a~~~L~nl~~~~  191 (384)
                      +++  .+.+++-.++..|.-...+.
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHHccc
Confidence            987  46788888888877765443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.29  E-value=0.18  Score=46.98  Aligned_cols=145  Identities=15%  Similarity=0.213  Sum_probs=106.8

Q ss_pred             CCcHHHHHH-cCCHHHHHHhhcCCC--ChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc-C---CCHHHHHH
Q 016714          107 SPPIDEVIK-AGVVPRFVEFLGRHD--MPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS-S---GSDDVREQ  179 (384)
Q Consensus       107 ~~~~~~~~~-~g~i~~Lv~lL~~~~--~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~---~~~~v~~~  179 (384)
                      ....+.+++ ..+...|...+++..  -+.+-..|+.+++.+....|..-..+.+.|.++.+++.+. .   ++.++...
T Consensus        95 ~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~  174 (379)
T PF06025_consen   95 GDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS  174 (379)
T ss_pred             ccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence            444555666 556667777887653  2688899999999999999999999999999999999887 3   56788888


Q ss_pred             HHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchh------HHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHh
Q 016714          180 AVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKL------SMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRL  252 (384)
Q Consensus       180 a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~------~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~l  252 (384)
                      .-.+|+.||-+... .+.+.+.+.++.+++.+.+....      +.....-..+-.|.++.|..+...+..++..+-++
T Consensus       175 lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l  252 (379)
T PF06025_consen  175 LPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRL  252 (379)
T ss_pred             HHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            88899999877764 46777889999999998433222      44555666777888887766555555544444443

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.23  E-value=0.0072  Score=33.84  Aligned_cols=29  Identities=24%  Similarity=0.451  Sum_probs=25.7

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVAS  147 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~  147 (384)
                      ++|.+++++++++ +.+|..|+++|+.++.
T Consensus         1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence            3799999999998 9999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.20  E-value=0.0068  Score=33.96  Aligned_cols=28  Identities=39%  Similarity=0.640  Sum_probs=25.3

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHhhhC
Q 016714          162 VPMFVQLLSSGSDDVREQAVWALGNVAG  189 (384)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~  189 (384)
                      +|.+++++.++++++|..|+++|+.++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            7899999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.14  E-value=0.068  Score=54.96  Aligned_cols=142  Identities=24%  Similarity=0.234  Sum_probs=108.3

Q ss_pred             CCHHHHHHhhcC----CCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCC
Q 016714          117 GVVPRFVEFLGR----HDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNVAGDS  191 (384)
Q Consensus       117 g~i~~Lv~lL~~----~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~  191 (384)
                      ...|.+++..+.    ++ |++|..|.-+|+.+..-+.+...     ..+|.|+..+. ++++.++.+++-++|-++...
T Consensus       919 ~f~piv~e~c~n~~~~sd-p~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~f  992 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSD-PELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF  992 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCC-HHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence            357777777754    34 99999999999998775444432     35788999887 799999999999999999777


Q ss_pred             CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 016714          192 PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYL  271 (384)
Q Consensus       192 ~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l  271 (384)
                      |..-+.     .-+.|...| .+.++.+++.|..+|++|--.+    ...+.|.++-+..+|..++++|..-|=.-+..|
T Consensus       993 pnlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen  993 PNLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred             ccccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            653322     334566666 7788999999999999998763    456689999999999999988877666444444


Q ss_pred             ccC
Q 016714          272 SDG  274 (384)
Q Consensus       272 ~~~  274 (384)
                      +..
T Consensus      1063 s~k 1065 (1251)
T KOG0414|consen 1063 SSK 1065 (1251)
T ss_pred             hhc
Confidence            443

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.11  E-value=0.41  Score=44.63  Aligned_cols=191  Identities=14%  Similarity=0.167  Sum_probs=121.4

Q ss_pred             HHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCC---CCchhhHHHhcCChHHHHHHhcc
Q 016714          137 EAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGD---SPSCRDLVLSSGALMPLLAQLNE  213 (384)
Q Consensus       137 ~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~---~~~~~~~i~~~g~i~~L~~~l~~  213 (384)
                      .|...|-.+....+.....+.+.+++..++..+..+-....+.    -.+...+   .+..+.....       ...+ .
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~i-~   70 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE----NKNEEAGSGIPPEYKESSVD-------GYSI-S   70 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----ccccCCCCCCCCCccccccc-------cccc-C
Confidence            4666777777777777888899999999999886432222111    0011100   0111111110       0000 1


Q ss_pred             cchhHHHHHHHHHHhhhhc-CC--CCCChhhhh--chHHHHHHhhccCC---HhHHHHHHHHHHHhccCChHHHHHHHHc
Q 016714          214 HSKLSMLRNATWTLSNFCR-GK--PPTPFEQVK--PALPILQRLIHLND---EEVLTDACWALSYLSDGPNDKIQAVIEA  285 (384)
Q Consensus       214 ~~~~~~~~~a~~~L~~L~~-~~--~~~~~~~~~--~~~~~L~~lL~~~~---~~i~~~a~~~l~~l~~~~~~~~~~~~~~  285 (384)
                      .....+++..+.++..+.. +.  .......+.  .+...|...+.+..   +.+...|+..+..+...++.....+.+.
T Consensus        71 ~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~  150 (379)
T PF06025_consen   71 YQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEA  150 (379)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHc
Confidence            1223455566666666665 22  111111222  34446666676553   7799999999999999999999999999


Q ss_pred             CChHHHHHhcC-C---CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC
Q 016714          286 GVCPRLVELLM-H---PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN  340 (384)
Q Consensus       286 g~~~~L~~lL~-~---~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~  340 (384)
                      |+++.+++.+. .   ++.++....-.+|+.||- +....+.+.+.+.++.+.+++.++
T Consensus       151 Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  151 GLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             CChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence            99999999987 3   345666666777777776 666777888899999999999887

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.04  E-value=0.43  Score=48.18  Aligned_cols=148  Identities=16%  Similarity=0.109  Sum_probs=90.7

Q ss_pred             ccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHH
Q 016714          213 EHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLV  292 (384)
Q Consensus       213 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~  292 (384)
                      .+.+..+....+..+..+.--.|  ....+....|.+...+...++.++.+..|.+..+-...+..--.......++.++
T Consensus       408 ~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~  485 (759)
T KOG0211|consen  408 LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIV  485 (759)
T ss_pred             hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhh
Confidence            45555555555555544443222  2333467788888889999999999999877665443322212234556677777


Q ss_pred             HhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHH
Q 016714          293 ELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA--GNRAQIQV  366 (384)
Q Consensus       293 ~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~i~~  366 (384)
                      .+-......++...++.+--++....   ..+++...-+.+...+.+. ...+++.|+..+.-++.  |..-.++.
T Consensus       486 el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~~w~~~~  557 (759)
T KOG0211|consen  486 ELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGSEWARLE  557 (759)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCcchhHHH
Confidence            77766677788888887777765332   2333333444455555555 66788888877777775  54444433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.04  E-value=0.45  Score=48.10  Aligned_cols=171  Identities=17%  Similarity=0.198  Sum_probs=111.8

Q ss_pred             HHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchH--HHHHHhhccCCH-h
Q 016714          183 ALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPAL--PILQRLIHLNDE-E  259 (384)
Q Consensus       183 ~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~--~~L~~lL~~~~~-~  259 (384)
                      +|+++....+.....+++.|++..+..++..-.+.++...+...+.|++...+..........+  ..+-.++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            4557777777777888999999999999976778889999999999999875332222221212  233334444444 7


Q ss_pred             HHHHHHHHHHHhccCChHHH---------HHH--------------HHcCChHH-HHHhc-CCCChhhHHHHHHHHHHhh
Q 016714          260 VLTDACWALSYLSDGPNDKI---------QAV--------------IEAGVCPR-LVELL-MHPSATVLIPALRTVGNIV  314 (384)
Q Consensus       260 i~~~a~~~l~~l~~~~~~~~---------~~~--------------~~~g~~~~-L~~lL-~~~~~~v~~~a~~~l~nl~  314 (384)
                      .-..++..++.+....+...         +.+              .....+.. +..++ .+..+..+..|+|++.+++
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~  653 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL  653 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence            77777777777765422110         011              11111222 33444 3345677889999999999


Q ss_pred             cCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHH
Q 016714          315 TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI  353 (384)
Q Consensus       315 ~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L  353 (384)
                      ...++....+.+.|+++.+..+-.......++.++.-.+
T Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            988888888889999998888766653344555554444

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.03  E-value=0.024  Score=38.79  Aligned_cols=65  Identities=15%  Similarity=0.246  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhc
Q 016714          135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSS  201 (384)
Q Consensus       135 ~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~  201 (384)
                      ...|+|+++++++ ++.....+.+.++++.++++..+ +...+|-.|.++|+-++.... ..+.+.+.
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~   69 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDEL   69 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHc
Confidence            4579999999998 46667777778999999998874 778999999999999987654 33444433

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=96.01  E-value=0.071  Score=43.15  Aligned_cols=147  Identities=12%  Similarity=0.102  Sum_probs=87.0

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714          117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD  196 (384)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (384)
                      .+++.|+.+|+.+.+..++.+++++||.|.+-++...+.+...  .+.-.  -...+...........+ +....    +
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~~~-~~~~~----e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPMMG-ISPSS----E   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhhcc-CCCch----H
Confidence            3578889999887669999999999999987655544432221  11000  01111222222221111 11111    2


Q ss_pred             HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 016714          197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLS  272 (384)
Q Consensus       197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~  272 (384)
                      ......++..|+..|.+.+-......++.++.++..............++|.++..+.+.+...++...+-|+.|.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2233346778888885544444444666666666654444456777899999999998777777777777766653

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.01  E-value=0.34  Score=48.88  Aligned_cols=268  Identities=11%  Similarity=0.102  Sum_probs=163.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      .+.....++....+.+...+....++...-+.+....+....++|.+..+..+.+ +.++...+...++++--.+  +..
T Consensus       357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-~~vr~a~a~~~~~~~p~~~--k~~  433 (759)
T KOG0211|consen  357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-LHVRSALASVITGLSPILP--KER  433 (759)
T ss_pred             hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc-chHHHHHhccccccCccCC--cCc
Confidence            4555555555556666666666655554433444555666677888888888777 7888777777766644322  111


Q ss_pred             HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC
Q 016714          156 VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP  235 (384)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~  235 (384)
                      -+ ....|.++..+++..+.++.+..|.+..+-...+...........++.+..+- ......++..+.+.+..++....
T Consensus       434 ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~-~d~~wRvr~ail~~ip~la~q~~  511 (759)
T KOG0211|consen  434 TI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA-EDLLWRVRLAILEYIPQLALQLG  511 (759)
T ss_pred             Cc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHhhh
Confidence            11 23567888888899999999999988776544332222223333455555544 44456777788888877776532


Q ss_pred             CCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714          236 PTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV  314 (384)
Q Consensus       236 ~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (384)
                         .... ....+.+...+.+...+++..|+..+..++..-..  +. .....++.++.....++...+...+.++.-++
T Consensus       512 ---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la  585 (759)
T KOG0211|consen  512 ---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EW-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELA  585 (759)
T ss_pred             ---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--ch-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHH
Confidence               1111 22333444445555567777777777666543221  11 11234566666655556667777777777554


Q ss_pred             cCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          315 TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       315 ~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .   -..+.+....++|.+..+..++ .+.||-.++..+--+..
T Consensus       586 ~---v~g~ei~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~  625 (759)
T KOG0211|consen  586 E---VLGQEITCEDLLPVFLDLVKDP-VANVRINVAKHLPKILK  625 (759)
T ss_pred             H---HhccHHHHHHHhHHHHHhccCC-chhhhhhHHHHHHHHHh
Confidence            2   1122344456788888988888 88999999988888876

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.00  E-value=0.22  Score=48.18  Aligned_cols=130  Identities=18%  Similarity=0.196  Sum_probs=85.2

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhh
Q 016714          164 MFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVK  243 (384)
Q Consensus       164 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  243 (384)
                      .++...+ .+...+..|+..+..+..+.|..++.     ++..+++++ .+.|..++..|...|..+|...+    ..+.
T Consensus        27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~   95 (556)
T PF05918_consen   27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVS   95 (556)
T ss_dssp             HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HH
T ss_pred             HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHh
Confidence            3444444 46889999999999999999876554     677899999 78889999999999999999753    4557


Q ss_pred             chHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC---CCChhhHHHHHHHHHH
Q 016714          244 PALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM---HPSATVLIPALRTVGN  312 (384)
Q Consensus       244 ~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~---~~~~~v~~~a~~~l~n  312 (384)
                      .+...|+++|.++++.-...+-++|..+...++..        .+..+...+.   .++..+++.++..|..
T Consensus        96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~  159 (556)
T PF05918_consen   96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLRE  159 (556)
T ss_dssp             HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence            78899999999999877777777777666544422        1222222222   4566778877777654

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.95  E-value=0.42  Score=40.79  Aligned_cols=142  Identities=14%  Similarity=0.097  Sum_probs=97.2

Q ss_pred             HHHHHHHhhhhcCCCCCChhhhhchHH-HHHHhhccC-----CHhHHHHHHHHHHHhccCCh-HHHHHHHHcCChHHHHH
Q 016714          221 RNATWTLSNFCRGKPPTPFEQVKPALP-ILQRLIHLN-----DEEVLTDACWALSYLSDGPN-DKIQAVIEAGVCPRLVE  293 (384)
Q Consensus       221 ~~a~~~L~~L~~~~~~~~~~~~~~~~~-~L~~lL~~~-----~~~i~~~a~~~l~~l~~~~~-~~~~~~~~~g~~~~L~~  293 (384)
                      -+++..|-.++.+ |.........-+| ++..+|...     .+..+-.+++.|+.|...++ +.+..+...+++|..++
T Consensus        97 cnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   97 CNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            4555555555555 6666666655566 566777543     36689999999999998755 56667788999999999


Q ss_pred             hcCCCChhhHHHHHHHHHHhhcCChHHHHHHH-------H-cCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 016714          294 LLMHPSATVLIPALRTVGNIVTGDDAQTQFVI-------D-NGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ  365 (384)
Q Consensus       294 lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~-------~-~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~  365 (384)
                      .+..++..-+.-|..+++.|...+. ...++-       . .-++..++.-+.+..+..+-|.+..+..+++. ++....
T Consensus       176 ime~GSelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~  253 (293)
T KOG3036|consen  176 IMESGSELSKTVATFILQKILLDDV-GLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARA  253 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHH
Confidence            9999999889999999999876433 211111       1 12344444444444388888999999999886 444333

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.94  E-value=0.53  Score=40.80  Aligned_cols=204  Identities=17%  Similarity=0.162  Sum_probs=121.5

Q ss_pred             CHHHHHHHHHHHHhhhCCCCchhhHHH-hcCChHHHHHHhcc------cc--hh---HHHHHHHHHHhhhhcCCCCCChh
Q 016714          173 SDDVREQAVWALGNVAGDSPSCRDLVL-SSGALMPLLAQLNE------HS--KL---SMLRNATWTLSNFCRGKPPTPFE  240 (384)
Q Consensus       173 ~~~v~~~a~~~L~nl~~~~~~~~~~i~-~~g~i~~L~~~l~~------~~--~~---~~~~~a~~~L~~L~~~~~~~~~~  240 (384)
                      +++.++.|+.-|+.--...+...-.+- ..|.+..|++-+..      .+  ..   .-.-+++..|..++.+ |+....
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence            567788877777765544444433333 34555555544321      11  11   2233445555566665 666666


Q ss_pred             hhhchHH-HHHHhhccCC-----HhHHHHHHHHHHHhccCC-hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714          241 QVKPALP-ILQRLIHLND-----EEVLTDACWALSYLSDGP-NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI  313 (384)
Q Consensus       241 ~~~~~~~-~L~~lL~~~~-----~~i~~~a~~~l~~l~~~~-~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (384)
                      .+..-+| +|..+|+..+     +.++-.+++.++.+...+ .+.+..+.+.+++|..++.+..++.--+.-|..++..|
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            6654444 6777775543     457888999999998764 46777888999999999999988888888899999988


Q ss_pred             hcCCh---------HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc--cccCCCccc
Q 016714          314 VTGDD---------AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL--FVLHEDFSL  381 (384)
Q Consensus       314 ~~~~~---------~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~--ll~~~~~~~  381 (384)
                      ...+.         +....+.  .++..++.-+...+++.+-|....+-..++. ++...+.+.+ .+  .++.+.|.-
T Consensus       167 L~dd~GL~yiC~t~eRf~av~--~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~~-~LP~~Lrd~~f~~  241 (262)
T PF04078_consen  167 LLDDVGLNYICQTAERFFAVA--MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALRQ-CLPDQLRDGTFSN  241 (262)
T ss_dssp             HHSHHHHHHHTSSHHHHHHHH--HHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHHH-HS-GGGTSSTTTT
T ss_pred             HcchhHHHHHhcCHHHHHHHH--HHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHHH-hCcHHHhcHHHHH
Confidence            75322         2222211  2445544444444388888999999888887 3333344432 22  455555543

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.77  E-value=0.3  Score=42.31  Aligned_cols=142  Identities=13%  Similarity=0.167  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC----hHHHHHHHHHHHHHhcC-CchhHHHHHhcCChHH
Q 016714           90 LQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDM----PQLQFEAAWALTNVASG-TSEHTRVVIEHGAVPM  164 (384)
Q Consensus        90 ~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~----~~~~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~  164 (384)
                      -...|+..+.-+++.  ++.+..++++.+.-.|..+|+..+.    +.++..++.+++.+... +.+....+.+.+++|.
T Consensus        66 RVcnaLaLlQ~vAsh--petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl  143 (262)
T PF04078_consen   66 RVCNALALLQCVASH--PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL  143 (262)
T ss_dssp             HHHHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred             HHHHHHHHHHHHHcC--hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence            334455666666663  7888889999988888999976541    56788888899988874 4567778888999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHhhhCCCCchh------hHHHh-cCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          165 FVQLLSSGSDDVREQAVWALGNVAGDSPSCR------DLVLS-SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       165 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~------~~i~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      .++.+..+++--+..|.+.+..|-.++....      +.+.. ..++..++..+...+++.+.+++.++...|+.+
T Consensus       144 cLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn  219 (262)
T PF04078_consen  144 CLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN  219 (262)
T ss_dssp             HHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence            9999999999999999999999876554321      11111 124555666666677889999999999999987

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.75  E-value=0.43  Score=45.16  Aligned_cols=244  Identities=12%  Similarity=0.109  Sum_probs=141.3

Q ss_pred             HHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhh
Q 016714          110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVA  188 (384)
Q Consensus       110 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~  188 (384)
                      ....++...+..|+.+++++| +.-|.....+|.++-......+..+.. .+...|..++.. ....-...++..++.+.
T Consensus       126 ~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii  203 (409)
T PF01603_consen  126 AKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSII  203 (409)
T ss_dssp             CTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHH
Confidence            333566678899999999999 999999999999987766666766665 455667777664 45556677888888887


Q ss_pred             CCCC-chhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHH
Q 016714          189 GDSP-SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWA  267 (384)
Q Consensus       189 ~~~~-~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~  267 (384)
                      .+.. ..++..... ....|+.+.....-...-.....++..++..+|.    ....++..+++.=-..+..-..--+.-
T Consensus       204 ~gf~~plk~eh~~f-l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~llk~WP~t~s~Kev~FL~e  278 (409)
T PF01603_consen  204 NGFAVPLKEEHKQF-LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGLLKHWPKTNSQKEVLFLNE  278 (409)
T ss_dssp             TT--SS--HHHHHH-HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHHHHHS-SS-HHHHHHHHHH
T ss_pred             hccCCCCcHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHhCCCCCchhHHHHHHH
Confidence            6532 222221110 1122333332222233455566666666665432    122334444444344455444555555


Q ss_pred             HHHhccCCh-HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc---CchHHHHHHhcc----
Q 016714          268 LSYLSDGPN-DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN---GVLPCLYQLLTQ----  339 (384)
Q Consensus       268 l~~l~~~~~-~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---g~l~~L~~ll~~----  339 (384)
                      +..+...-+ ..... +..-+...+...+.+++..|.+.|+..+.|=     ... .++..   .++|.+...+..    
T Consensus       279 l~~il~~~~~~~f~~-i~~~lf~~la~ci~S~h~qVAErAl~~w~n~-----~~~-~li~~~~~~i~p~i~~~L~~~~~~  351 (409)
T PF01603_consen  279 LEEILEVLPPEEFQK-IMVPLFKRLAKCISSPHFQVAERALYFWNNE-----YFL-SLISQNSRVILPIIFPALYRNSKN  351 (409)
T ss_dssp             HHHHHTT--HHHHHH-HHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH-----HHH-HHHHCTHHHHHHHHHHHHSSTTSS
T ss_pred             HHHHHHhcCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH-----HHH-HHHHhChHHHHHHHHHHHHHHHHH
Confidence            555555432 22222 2334677888888999999988888766542     111 12222   255666665543    


Q ss_pred             CCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 016714          340 NHKKSIKKEACWTISNITAGNRAQIQVH  367 (384)
Q Consensus       340 ~~~~~v~~~a~~~L~nl~~~~~~~i~~l  367 (384)
                      ..+..++..|.-++.-+..-+++..+.+
T Consensus       352 HWn~~Vr~~a~~vl~~l~~~d~~lf~~~  379 (409)
T PF01603_consen  352 HWNQTVRNLAQNVLKILMEMDPKLFDKC  379 (409)
T ss_dssp             -SSTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            2378899999999999998777765543

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.73  E-value=0.49  Score=48.21  Aligned_cols=186  Identities=17%  Similarity=0.120  Sum_probs=127.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHH
Q 016714           77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVV  156 (384)
Q Consensus        77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i  156 (384)
                      +.+-..+.++++..+.+|+..+...++...  -...-...|.+-.++.....+.+..+...|+.+|..|+......-...
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~  333 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY  333 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence            444556668899999999999999987432  111112335566666665544448899999999999998655443333


Q ss_pred             HhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC-
Q 016714          157 IEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP-  235 (384)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~-  235 (384)
                      . .+.+|.|+..+......+++.+..++-.++...+-       ...++.++..+ .+.++.+...+...+....+..+ 
T Consensus       334 ~-~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  334 A-KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             H-HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence            2 36789999999988888888877776666543221       12455666677 77777777665555554444432 


Q ss_pred             -CCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 016714          236 -PTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSD  273 (384)
Q Consensus       236 -~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~  273 (384)
                       ......+..++|.++......+.+++..+..+++-+..
T Consensus       405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence             23344558899999999999999999999999887654

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.73  E-value=0.043  Score=44.32  Aligned_cols=147  Identities=20%  Similarity=0.194  Sum_probs=98.3

Q ss_pred             ChHHHHHHhcc-cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHH
Q 016714          203 ALMPLLAQLNE-HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQA  281 (384)
Q Consensus       203 ~i~~L~~~l~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~  281 (384)
                      .++.++..|.. ...++++..++-+++.+-..   ........+-+++...+...+.+-...++.++..+....++....
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDA---AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence            45566666644 45667777777777777311   111122334445556666666667788888999988888776555


Q ss_pred             HH-HcCChHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchh-HHHHHHHHHH
Q 016714          282 VI-EAGVCPRLVELLM--HPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKS-IKKEACWTIS  354 (384)
Q Consensus       282 ~~-~~g~~~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~-v~~~a~~~L~  354 (384)
                      +. ..|+++.+.....  ..+..++..++.+|..-|. +...+. .+...+++.|..++..+++.. +|-.|+-+|.
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            54 6699999999998  7788888889888876553 444444 455568899999997653565 7888877765

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.62  E-value=0.54  Score=47.90  Aligned_cols=239  Identities=17%  Similarity=0.202  Sum_probs=138.1

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHhhhCCC
Q 016714          117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-----GSDDVREQAVWALGNVAGDS  191 (384)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~  191 (384)
                      .....+|+-|.++...+.-.+-...++++.          .+.|++..++.++.+     ....+....+..|...+.- 
T Consensus        84 eAtE~~v~~l~~~~~~~~d~e~~~~~~~v~----------~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-  152 (802)
T PF13764_consen   84 EATEEFVESLEDDSEEEEDPEQEFKIASVL----------AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-  152 (802)
T ss_pred             ccchhhHhhccCccccccCHHHHHHHHHHh----------hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-
Confidence            345566676665331222222223333332          256889999888875     3345555555555555544 


Q ss_pred             CchhhHHHhcCChHHHHHHhc---ccch----hHHHHHHHHHHhhhhcCCCCCCh-------------hhhhchHHHHHH
Q 016714          192 PSCRDLVLSSGALMPLLAQLN---EHSK----LSMLRNATWTLSNFCRGKPPTPF-------------EQVKPALPILQR  251 (384)
Q Consensus       192 ~~~~~~i~~~g~i~~L~~~l~---~~~~----~~~~~~a~~~L~~L~~~~~~~~~-------------~~~~~~~~~L~~  251 (384)
                      +.+|..+++.|+++.|+..+.   ....    ..+.+..+.++--+.........             ......+..|++
T Consensus       153 ~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~  232 (802)
T PF13764_consen  153 KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLE  232 (802)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHH
Confidence            568999999999999998884   2222    34555444444433332111000             012233555666


Q ss_pred             hhcc----CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC-----CChhhHHHHHHHHHHhhcCC-----
Q 016714          252 LIHL----NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH-----PSATVLIPALRTVGNIVTGD-----  317 (384)
Q Consensus       252 lL~~----~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~-----  317 (384)
                      .+.+    .++.+....+++|-+|+.+..+..+.++++     +-+.|+-     ....--...+.+++.++.+-     
T Consensus       233 ~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-----F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~  307 (802)
T PF13764_consen  233 RLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-----FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSN  307 (802)
T ss_pred             HhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-----HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCc
Confidence            6654    468899999999999999999888877543     3333321     11111234467777776553     


Q ss_pred             -hHHHHHHHHcCchHHHHHHhccCC-------chhHH--------HHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          318 -DAQTQFVIDNGVLPCLYQLLTQNH-------KKSIK--------KEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       318 -~~~~~~i~~~g~l~~L~~ll~~~~-------~~~v~--------~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                       ....+.+++.|++...+..|....       +++.+        +.+...|.-++.|.... |.++..++
T Consensus       308 G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~t-Q~~~~~~~  377 (802)
T PF13764_consen  308 GNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHEPT-QLLIAEQL  377 (802)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHHH-HHHHHhhH
Confidence             255678889999998877776431       22233        23666777777776553 33344433

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.55  E-value=1.9  Score=42.72  Aligned_cols=158  Identities=21%  Similarity=0.160  Sum_probs=104.6

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh
Q 016714          160 GAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF  239 (384)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~  239 (384)
                      ++=+.+-.++.+.++-+|...+++++---....       ..++|..|+..--++.+.++++.|.-+|.-+|..+|.   
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---  588 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---  588 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh---
Confidence            444555667777888888888777664322211       2346677777755788899999999999988877652   


Q ss_pred             hhhhchHHHHHHhh-ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 016714          240 EQVKPALPILQRLI-HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD  318 (384)
Q Consensus       240 ~~~~~~~~~L~~lL-~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  318 (384)
                           .+|..+.+| .+-++.++.-++-+|+-.|.+.....       .+..|-.+..++..-|++-|+-+++-|.....
T Consensus       589 -----~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t  656 (929)
T KOG2062|consen  589 -----QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT  656 (929)
T ss_pred             -----hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence                 345566666 45689999999999999887754332       13445555567778899999999999864322


Q ss_pred             HHHHHHHHcCchHHHHHHhccC
Q 016714          319 AQTQFVIDNGVLPCLYQLLTQN  340 (384)
Q Consensus       319 ~~~~~i~~~g~l~~L~~ll~~~  340 (384)
                      +....=+ .++-..+.+++.+.
T Consensus       657 ~~~~pkv-~~frk~l~kvI~dK  677 (929)
T KOG2062|consen  657 EQLCPKV-NGFRKQLEKVINDK  677 (929)
T ss_pred             cccCchH-HHHHHHHHHHhhhh
Confidence            2211101 13455566666654

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.44  E-value=0.98  Score=40.77  Aligned_cols=171  Identities=16%  Similarity=0.119  Sum_probs=104.7

Q ss_pred             CCHHHHH-HhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhC-CCCch
Q 016714          117 GVVPRFV-EFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAG-DSPSC  194 (384)
Q Consensus       117 g~i~~Lv-~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~  194 (384)
                      +++..|+ ..+.+++ +.+|..|..|||-.+--+.+...     ..++.+...+..+++.++..|+.++..+.. ++...
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            4555555 6778888 89999999999998875443222     236777787777899999999999998863 22111


Q ss_pred             hhHH-------HhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcc----CCHhHHHH
Q 016714          195 RDLV-------LSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHL----NDEEVLTD  263 (384)
Q Consensus       195 ~~~i-------~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~----~~~~i~~~  263 (384)
                      -+..       .....+..+.+.+ .+.+++++..++..++.|.-......   ...++..|+-+..+    ++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            1111       1223455666666 55578899999999988877653222   12333333322222    23455555


Q ss_pred             HHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC
Q 016714          264 ACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP  298 (384)
Q Consensus       264 a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~  298 (384)
                      ....+-..+...... +..+...+++.+-.+....
T Consensus       176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            445555555555444 3455566777777776543

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.43  E-value=0.64  Score=46.00  Aligned_cols=114  Identities=10%  Similarity=0.052  Sum_probs=69.6

Q ss_pred             hhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 016714          242 VKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN-DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ  320 (384)
Q Consensus       242 ~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~-~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  320 (384)
                      ..+++--++.+|.++|-+++..++.....|+.... +.+-.+.+..+...--. =...+...+..-++++...+..-++.
T Consensus       315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~  393 (948)
T KOG1058|consen  315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV  393 (948)
T ss_pred             HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence            35666667788899999999999998887775432 22211211111111000 01123466788888888888766665


Q ss_pred             HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 016714          321 TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRA  362 (384)
Q Consensus       321 ~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  362 (384)
                      ..     .+++.|++.+.+. ++.........+.......|.
T Consensus       394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~  429 (948)
T KOG1058|consen  394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPN  429 (948)
T ss_pred             HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCch
Confidence            54     4667889999887 666555555555555554443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.42  E-value=0.15  Score=52.64  Aligned_cols=142  Identities=18%  Similarity=0.150  Sum_probs=109.3

Q ss_pred             ChHHHHHhhcC----CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714          161 AVPMFVQLLSS----GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP  236 (384)
Q Consensus       161 ~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~  236 (384)
                      ..|.++...++    ++|+++..|.-+|+.+..-+..+.+     ..++.|+..+..++++-++.++.-+++-|+-..|+
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            45666666643    6799999999999999765543322     25788999998889999999999888888876554


Q ss_pred             CChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714          237 TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG  316 (384)
Q Consensus       237 ~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (384)
                      .    +.+.-+.|...|+..++.++..|...+++|.-.+.     +--.|.+..+..+|.+++..|+.-|=..+--+...
T Consensus       995 l----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen  995 L----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred             c----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence            2    34566788889999999999999999999986543     23358999999999999998887777555555543

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=95.20  E-value=0.42  Score=44.38  Aligned_cols=209  Identities=16%  Similarity=0.150  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHH
Q 016714          133 QLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-----GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPL  207 (384)
Q Consensus       133 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L  207 (384)
                      .++..++.++...+....+.-..++. ..+.....+|.+     ..+.+...|+..|..++... ..+..+...+.+..+
T Consensus       111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~-~~~~lf~~~~~L~~I  188 (370)
T PF08506_consen  111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESP-HHKNLFENKPHLQQI  188 (370)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSH-HHHTTT-SHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcch-hHHHHhCCHHHHHHH
Confidence            34555555555555544444333333 344555555543     34677888888888876543 222222222233333


Q ss_pred             HHHh---------------cc------------cchhHHHHHHHHHHhhhhcCCCCCChhhhhch-HHHHHHhhc-----
Q 016714          208 LAQL---------------NE------------HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPA-LPILQRLIH-----  254 (384)
Q Consensus       208 ~~~l---------------~~------------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~-~~~L~~lL~-----  254 (384)
                      ++.+               ..            +....-+++|+..+..||...+.    .+.+. ...+..+|.     
T Consensus       189 ie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~----~v~~i~~~~i~~~l~~y~~~  264 (370)
T PF08506_consen  189 IEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEK----QVTSILMQYIQQLLQQYASN  264 (370)
T ss_dssp             HHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHhhC
Confidence            3221               01            11123466788888888875321    12222 233444443     


Q ss_pred             -cCCHhHHHHHHHHHHHhccCChH------------HHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH
Q 016714          255 -LNDEEVLTDACWALSYLSDGPND------------KIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQT  321 (384)
Q Consensus       255 -~~~~~i~~~a~~~l~~l~~~~~~------------~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~  321 (384)
                       +.++.-...|+..++.++.....            ....+....++|-|. -=.+..+-++..|++.+...-..-+.. 
T Consensus       265 ~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-  342 (370)
T PF08506_consen  265 PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-  342 (370)
T ss_dssp             TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-
T ss_pred             CcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-
Confidence             34566777788888888765421            234455566666665 222345677888999988886643321 


Q ss_pred             HHHHHcCchHHHHHHhccCCchhHHHHHHHHH
Q 016714          322 QFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI  353 (384)
Q Consensus       322 ~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L  353 (384)
                       .+  .+++|.++..|.++ +..|+..|+.++
T Consensus       343 -~l--~~~~~~l~~~L~~~-~~vv~tyAA~~i  370 (370)
T PF08506_consen  343 -QL--LQIFPLLVNHLQSS-SYVVHTYAAIAI  370 (370)
T ss_dssp             -HH--HHHHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred             -HH--HHHHHHHHHHhCCC-CcchhhhhhhhC
Confidence             11  24889999999999 899999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.19  E-value=2.1  Score=38.00  Aligned_cols=201  Identities=12%  Similarity=0.112  Sum_probs=131.3

Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchh----hHHHhcCChHHHHHHhcccc-hhHHHHHHHHHHhh
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR----DLVLSSGALMPLLAQLNEHS-KLSMLRNATWTLSN  229 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~----~~i~~~g~i~~L~~~l~~~~-~~~~~~~a~~~L~~  229 (384)
                      .+.+.|.++.|+..+..-+-+-+.-++.+..|+-...-..+    +.+..  -.+.+..++.... .+++.-.+...|..
T Consensus        74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t--~~e~~~~lv~~~~~~~~iaL~cg~mlrE  151 (342)
T KOG1566|consen   74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET--NPEILDNLVKGYENTPEIALTCGNMLRE  151 (342)
T ss_pred             HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh--CHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence            46678999999999988777777777778777754322222    22221  1222222332222 25555555555655


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCC----hHHHHHhcCCCChhhHHH
Q 016714          230 FCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGV----CPRLVELLMHPSATVLIP  305 (384)
Q Consensus       230 L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~----~~~L~~lL~~~~~~v~~~  305 (384)
                      ..+...-.........+.....+.+.+.-++..+|..+...+.......+..+.....    .+.--.++.+++.-++..
T Consensus       152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq  231 (342)
T KOG1566|consen  152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ  231 (342)
T ss_pred             HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence            5554322222223556666677777788899999999988776654444444444432    344666778889889999


Q ss_pred             HHHHHHHhhcCCh---HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          306 ALRTVGNIVTGDD---AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       306 a~~~l~nl~~~~~---~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ++..+|.+..+.+   ..+.++-+..-+..+..+|..+ ...++-+|--+..-..+
T Consensus       232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA  286 (342)
T KOG1566|consen  232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA  286 (342)
T ss_pred             HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence            9999999976533   3445555557788999999998 88999999887777776

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.14  E-value=0.56  Score=44.36  Aligned_cols=235  Identities=15%  Similarity=0.110  Sum_probs=134.6

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      -+..|+..+.|.|+..+......+..+...  -......+...+...|.+++..+.......+.+.+++.+..|...--+
T Consensus       134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk  211 (409)
T PF01603_consen  134 FIKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK  211 (409)
T ss_dssp             HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence            467888888999999998888888887654  455666677777888888887655477888999999999886331111


Q ss_pred             HHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          155 VVIEHGAVPMFVQLLSSGS-DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      .....-....|+.+.+.+. .....+...++..+...++.....     .+..+++.- ...+..=....+.-+..+...
T Consensus       212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~FL~el~~il~~  285 (409)
T PF01603_consen  212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVLFLNELEEILEV  285 (409)
T ss_dssp             HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHHHHHHHHHHHHh
Confidence            1111111233334444432 233455566666666555543222     222333333 222332223334445555554


Q ss_pred             CCCCChh-hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHHhcC-----CCChhhHH
Q 016714          234 KPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA---GVCPRLVELLM-----HPSATVLI  304 (384)
Q Consensus       234 ~~~~~~~-~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~---g~~~~L~~lL~-----~~~~~v~~  304 (384)
                      -+...+. ....++..+...+.+.+..|.+.|+....+     +... .++..   .++|.+..-|.     |-+..++.
T Consensus       286 ~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~-~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~  359 (409)
T PF01603_consen  286 LPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFL-SLISQNSRVILPIIFPALYRNSKNHWNQTVRN  359 (409)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHH-HHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHH-HHHHhChHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            3322222 236677778888899999998888755432     1112 12222   24566666653     34778999


Q ss_pred             HHHHHHHHhhcCChHHHHH
Q 016714          305 PALRTVGNIVTGDDAQTQF  323 (384)
Q Consensus       305 ~a~~~l~nl~~~~~~~~~~  323 (384)
                      .|..++.-+...++...+.
T Consensus       360 ~a~~vl~~l~~~d~~lf~~  378 (409)
T PF01603_consen  360 LAQNVLKILMEMDPKLFDK  378 (409)
T ss_dssp             HHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHHHHHhCHHHHHH
Confidence            9999999988777655443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.12  E-value=2.9  Score=39.48  Aligned_cols=234  Identities=13%  Similarity=0.111  Sum_probs=131.8

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC--CCcHHHHHHcCCHHHHHHhhcCC----CChH--HHHHHHHHHHHHh
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIER--SPPIDEVIKAGVVPRFVEFLGRH----DMPQ--LQFEAAWALTNVA  146 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~--~~~~~~~~~~g~i~~Lv~lL~~~----~~~~--~~~~a~~~L~nl~  146 (384)
                      +......++...+.+.++.|+-...+++...+  ..+.+.+.+.-+++.+-.+|.+.    +.|+  .+..+..+|+-.|
T Consensus        12 a~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC   91 (698)
T KOG2611|consen   12 ALDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFC   91 (698)
T ss_pred             chhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHh
Confidence            34456667777788899999999999887652  22344577888889888888653    2233  3445566777777


Q ss_pred             cCCchh--HHHHHhcCChHHHHHhhcC-C------CHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc--
Q 016714          147 SGTSEH--TRVVIEHGAVPMFVQLLSS-G------SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS--  215 (384)
Q Consensus       147 ~~~~~~--~~~i~~~g~i~~L~~lL~~-~------~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~--  215 (384)
                      .. ++-  -..++  +.||.|..++.. .      +..+.+.+-.+|..+++..+. ...++..|+++.+.++-.-++  
T Consensus        92 ~~-pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~  167 (698)
T KOG2611|consen   92 RV-PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGS  167 (698)
T ss_pred             CC-hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCc
Confidence            64 332  23344  468999998874 2      234888999999999988664 455678899999987653221  


Q ss_pred             -hhHHHHHHHHHH-hhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh--HHHHHHHHcC----C
Q 016714          216 -KLSMLRNATWTL-SNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN--DKIQAVIEAG----V  287 (384)
Q Consensus       216 -~~~~~~~a~~~L-~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~--~~~~~~~~~g----~  287 (384)
                       +..+.-.+.-.+ +.+-.+ +. .......++..+..-+...+....-+.|..|..+.....  -....+....    .
T Consensus       168 ~d~alal~Vlll~~~~~~cw-~e-~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l  245 (698)
T KOG2611|consen  168 HDMALALKVLLLLVSKLDCW-SE-TIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYL  245 (698)
T ss_pred             hhHHHHHHHHHHHHHhcccC-cC-CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHH
Confidence             222111111111 111111 11 111122234444444455666777788888874433221  1111111111    1


Q ss_pred             hHHHHHhcCCC-ChhhHHHHHHHHHHhh
Q 016714          288 CPRLVELLMHP-SATVLIPALRTVGNIV  314 (384)
Q Consensus       288 ~~~L~~lL~~~-~~~v~~~a~~~l~nl~  314 (384)
                      ..-++.+|++. .+.-+.+|+....|+.
T Consensus       246 ~~G~~~IL~~kv~p~qr~pAL~Laa~~~  273 (698)
T KOG2611|consen  246 RTGVVAILQNKVAPSQRLPALILAANMM  273 (698)
T ss_pred             HHHHHHHHhcccCchhcChHHHHHHHHH
Confidence            22234444332 3445667777666664

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.96  E-value=2.2  Score=36.96  Aligned_cols=202  Identities=20%  Similarity=0.186  Sum_probs=120.6

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHH
Q 016714          119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLV  198 (384)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i  198 (384)
                      +|.|+.-+....++..+...+.+|..++..+..+..     -++..|..+...+.......+...+..+...++...   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            455555454444499999999999999986412211     234556666666666666667777777765544221   


Q ss_pred             HhcCChHHHHHHh---------cccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh-ccCCHhHHHHHHHHH
Q 016714          199 LSSGALMPLLAQL---------NEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI-HLNDEEVLTDACWAL  268 (384)
Q Consensus       199 ~~~g~i~~L~~~l---------~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~i~~~a~~~l  268 (384)
                         +.+..++..+         ......+.......++..+|...|.    .-..+++.+..+| ++.++.++..++.+|
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               2344444431         1122334555667789999998766    3345677778888 788889999999999


Q ss_pred             HHhccCChHHHHHHHHcCChHHHHHhcCC-CChhhHHHHHHHHHHhhcCChH-HHHHHHHcCchHHHHHHhccC
Q 016714          269 SYLSDGPNDKIQAVIEAGVCPRLVELLMH-PSATVLIPALRTVGNIVTGDDA-QTQFVIDNGVLPCLYQLLTQN  340 (384)
Q Consensus       269 ~~l~~~~~~~~~~~~~~g~~~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~~~-~~~~i~~~g~l~~L~~ll~~~  340 (384)
                      ..++...--...     .....+.+-|.. ..+.+....+..++.+..+.-+ .........++..+-++..+.
T Consensus       147 ~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~  215 (234)
T PF12530_consen  147 APLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS  215 (234)
T ss_pred             HHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence            999944321111     223444444533 3455555555555555444221 112234456777777777776

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.95  E-value=0.61  Score=47.53  Aligned_cols=197  Identities=13%  Similarity=0.065  Sum_probs=130.2

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh
Q 016714          163 PMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV  242 (384)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  242 (384)
                      +.+-.-+.+.+-.-+-.|+..+.-+..... ........|.+-.++.....+.+..+...++.+|..++..-+.......
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~  334 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA  334 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            334444455666677777777777765544 1111112234455566665677888888999999999987655556666


Q ss_pred             hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH-H
Q 016714          243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ-T  321 (384)
Q Consensus       243 ~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-~  321 (384)
                      ...+|.+...+...-..++..+..++-..+....       -....+.+...+.+.++.++..+...+.......+.. .
T Consensus       335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence            8888999988887777666665555544433211       1134678888899999999999888888877654421 1


Q ss_pred             HHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHH
Q 016714          322 QFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHD  368 (384)
Q Consensus       322 ~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~  368 (384)
                      ..---.++++.++....+. +.+||+.|.-+++-+.. .+.+.+..++
T Consensus       408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L  454 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKLL  454 (815)
T ss_pred             chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            1111236788888888888 89999999888888876 3444444443

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.76  E-value=0.94  Score=42.09  Aligned_cols=244  Identities=19%  Similarity=0.181  Sum_probs=127.6

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHH-HHhhhCCCCchhh
Q 016714          119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWA-LGNVAGDSPSCRD  196 (384)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~-L~nl~~~~~~~~~  196 (384)
                      +..+++=|.++....+|..++--|+.-+. +++++..+...|.+..+++.+.. ++..+...++.+ +.-++.+.. .-.
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            56666666644446888888888888777 49999999999999999999955 333244444434 444445544 334


Q ss_pred             HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhh-hhchHHHHHHhhc---------cCCHhHHHHHHH
Q 016714          197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQ-VKPALPILQRLIH---------LNDEEVLTDACW  266 (384)
Q Consensus       197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~L~~lL~---------~~~~~i~~~a~~  266 (384)
                      .+...+....++.++.-....+......      ..  ....... ....+..+.+.+.         ......+.-++.
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~--~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall  172 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SS--RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL  172 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh------hh--hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence            4444555555566663000000000000      00  0000000 0111111111110         111223333444


Q ss_pred             HHHHhc--------------cCChHHHHHHHHcCChHHHHHhcC----CC------------ChhhHHHHHHHHHHhhcC
Q 016714          267 ALSYLS--------------DGPNDKIQAVIEAGVCPRLVELLM----HP------------SATVLIPALRTVGNIVTG  316 (384)
Q Consensus       267 ~l~~l~--------------~~~~~~~~~~~~~g~~~~L~~lL~----~~------------~~~v~~~a~~~l~nl~~~  316 (384)
                      ++-.++              ...+...+.+.+.|++..++..+.    ..            +......++++|-|.+..
T Consensus       173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~  252 (361)
T PF07814_consen  173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL  252 (361)
T ss_pred             HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence            443332              111222345566788888888874    11            112345688888888876


Q ss_pred             ChHHHHHHHHc--CchHHHH-HHhccCC--chhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          317 DDAQTQFVIDN--GVLPCLY-QLLTQNH--KKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       317 ~~~~~~~i~~~--g~l~~L~-~ll~~~~--~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      +.+...+++..  +.++.+. .++....  ...+...++.++.|++-.+++.++.+...++
T Consensus       253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l  313 (361)
T PF07814_consen  253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL  313 (361)
T ss_pred             CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence            66554444433  3333332 2222220  2334567899999999988887777766654

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=94.66  E-value=2.5  Score=41.99  Aligned_cols=275  Identities=13%  Similarity=0.088  Sum_probs=155.7

Q ss_pred             cCHHHHHHHhcC--------CCHHHHHHHHHHHHHHhcC-CCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHH
Q 016714           74 ESIPSMVQGVWS--------EDPALQLEATTQFRKLLSI-ERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTN  144 (384)
Q Consensus        74 ~~l~~lv~~l~s--------~~~~~~~~a~~~l~~l~s~-~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~n  144 (384)
                      +.++-+...+..        +++-....|++.+..+.+. +...+...+.+.=+++.++..++++. --++..||..+..
T Consensus       408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~y-gfL~Srace~is~  486 (970)
T COG5656         408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNY-GFLKSRACEFIST  486 (970)
T ss_pred             hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcc-cchHHHHHHHHHH
Confidence            345556666621        2233444566666666541 23566666777778888998888877 6789999999988


Q ss_pred             HhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHH-HHhc--ccchhHHHH
Q 016714          145 VASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLL-AQLN--EHSKLSMLR  221 (384)
Q Consensus       145 l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~-~~l~--~~~~~~~~~  221 (384)
                      +.   .+.....+-..+.+....++.+.+..++-.|+.||.-+..+.. ..+.+.+  .+|+.+ ++|.  ..-+.+...
T Consensus       487 ~e---eDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q-~h~k~sa--hVp~tmekLLsLSn~feiD~LS  560 (970)
T COG5656         487 IE---EDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ-SHEKFSA--HVPETMEKLLSLSNTFEIDPLS  560 (970)
T ss_pred             HH---HhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh-hhHHHHh--hhhHHHHHHHHhcccccchHHH
Confidence            83   4455555555677778888888888999999999998887663 3344433  233333 3332  222344444


Q ss_pred             HHHHHH-hhhhcCCCCCChhhhhchHHHHHH----hhccC-C-----HhHHHHHHHHHHHhcc------CChHHHHHHHH
Q 016714          222 NATWTL-SNFCRGKPPTPFEQVKPALPILQR----LIHLN-D-----EEVLTDACWALSYLSD------GPNDKIQAVIE  284 (384)
Q Consensus       222 ~a~~~L-~~L~~~~~~~~~~~~~~~~~~L~~----lL~~~-~-----~~i~~~a~~~l~~l~~------~~~~~~~~~~~  284 (384)
                      .+...+ ..++..-.....+....++..+++    ++..+ |     .+-+..|.+.|..+..      ..+.... -..
T Consensus       561 ~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk-~le  639 (970)
T COG5656         561 MVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLK-YLE  639 (970)
T ss_pred             HHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHH-HHH
Confidence            443332 222222222222333344443333    33322 1     1223344444443321      1111111 122


Q ss_pred             cCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          285 AGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       285 ~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ....|.+-=.|.+.-.++-..|+.++-+.+....+...  +.-|+.+.+.+++.+...-.--++++-++.|+.-
T Consensus       640 ~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfit  711 (970)
T COG5656         640 VSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFIT  711 (970)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence            33444444455666677778888888877654433332  2347788888888877323666788889999886

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.50  E-value=0.43  Score=45.65  Aligned_cols=150  Identities=25%  Similarity=0.337  Sum_probs=101.8

Q ss_pred             HHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhc
Q 016714          123 VEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL-LSSGSDDVREQAVWALGNVAGDSPSCRDLVLSS  201 (384)
Q Consensus       123 v~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~  201 (384)
                      -+++.+.+ +-++...+..++.--.++.       +.|++..|++. .++.+++++..|+-+||-+|.+++.        
T Consensus       522 ~ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------  585 (926)
T COG5116         522 NELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------  585 (926)
T ss_pred             HHHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------
Confidence            34455555 6777777776654333322       34678888887 6778999999999999999977763        


Q ss_pred             CChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHH
Q 016714          202 GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQA  281 (384)
Q Consensus       202 g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~  281 (384)
                       .+...+++|..+.+..++...+.+|.-.|.+...      .-++..|-.+....+.-++..|+-+++.+.....+....
T Consensus       586 -~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp  658 (926)
T COG5116         586 -LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP  658 (926)
T ss_pred             -hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence             3455677775666788888888899988887532      234556666777788889999999998877554332221


Q ss_pred             HHHcCChHHHHHhcC
Q 016714          282 VIEAGVCPRLVELLM  296 (384)
Q Consensus       282 ~~~~g~~~~L~~lL~  296 (384)
                      -+ .++...+.+...
T Consensus       659 ~v-~~I~k~f~~vI~  672 (926)
T COG5116         659 NV-KRIIKKFNRVIV  672 (926)
T ss_pred             hH-HHHHHHHHHHHh
Confidence            11 245555655553

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.45  E-value=0.77  Score=44.19  Aligned_cols=107  Identities=20%  Similarity=0.223  Sum_probs=81.8

Q ss_pred             hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc--C
Q 016714          239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT--G  316 (384)
Q Consensus       239 ~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~--~  316 (384)
                      ...+.+.+..++..+.+.|..++..+|.+|+.+.+.-.+ ++..+-.|++..|.+-+.+..+.++..|+.+|+.+-.  +
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            566788889999999999999999999999998876443 2334556888889888888899999999999999853  3


Q ss_pred             ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHH
Q 016714          317 DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI  353 (384)
Q Consensus       317 ~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L  353 (384)
                      +++..       ....|..++++.++.++|+.|..-+
T Consensus       165 neen~-------~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         165 NEENR-------IVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             ChHHH-------HHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            33332       2345777888776888998865443

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.44  E-value=0.15  Score=42.51  Aligned_cols=108  Identities=14%  Similarity=0.060  Sum_probs=71.0

Q ss_pred             CCCHHHHHHHHHHHHhhhCCCCchhhHHH---------------hcCChHHHHHHhcc-----cchhHHHHHHHHHHhhh
Q 016714          171 SGSDDVREQAVWALGNVAGDSPSCRDLVL---------------SSGALMPLLAQLNE-----HSKLSMLRNATWTLSNF  230 (384)
Q Consensus       171 ~~~~~v~~~a~~~L~nl~~~~~~~~~~i~---------------~~g~i~~L~~~l~~-----~~~~~~~~~a~~~L~~L  230 (384)
                      ++.......++..|+|++.....++..+-               +...+..|+..+..     .....-..+.+.+|+|+
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            34445667788888888876554432221               22356777877755     12345667889999999


Q ss_pred             hcCCCCCChhhh--hc--hHHHHHHhhccCCHhHHHHHHHHHHHhccCChHH
Q 016714          231 CRGKPPTPFEQV--KP--ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDK  278 (384)
Q Consensus       231 ~~~~~~~~~~~~--~~--~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~  278 (384)
                      ++......+...  ..  .+..|+.++.+.+..-+.-++.+|.|+|...+..
T Consensus        86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H  137 (192)
T PF04063_consen   86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH  137 (192)
T ss_pred             cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence            997422222111  22  3677888888888888899999999999876554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=94.37  E-value=0.19  Score=49.20  Aligned_cols=183  Identities=15%  Similarity=0.143  Sum_probs=127.5

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      ..+|.++++..+.|..++..-+..+.++.    ..-.+.+++.-++|.+..-+.+.+ +.+++.++.++..++.-=.   
T Consensus       330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i----~~Lt~~~~~d~I~phv~~G~~DTn-~~Lre~Tlksm~~La~kL~---  401 (690)
T KOG1243|consen  330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYI----DHLTKQILNDQIFPHVALGFLDTN-ATLREQTLKSMAVLAPKLS---  401 (690)
T ss_pred             chhhhHHHHhcCcchHHHHHHHHhHHHHh----hhcCHHhhcchhHHHHHhhcccCC-HHHHHHHHHHHHHHHhhhc---
Confidence            45789999999999999888888887775    233456778889999999998888 8999999999988876311   


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS-PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                      ...++...+..|-.+-.+++..++....-+|+.++.+. +..|..+    .+.++.+.+ .++-...+..+.+++...+.
T Consensus       402 ~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~v----L~~aftral-kdpf~paR~a~v~~l~at~~  476 (690)
T KOG1243|consen  402 KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRV----LASAFTRAL-KDPFVPARKAGVLALAATQE  476 (690)
T ss_pred             hhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccc----cchhhhhhh-cCCCCCchhhhhHHHhhccc
Confidence            12344445666666666678889999999999998763 3333332    233455545 44445566777777765554


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 016714          233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYL  271 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l  271 (384)
                      .  .........++|.+..+.-.++..++..+..++...
T Consensus       477 ~--~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f  513 (690)
T KOG1243|consen  477 Y--FDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF  513 (690)
T ss_pred             c--cchhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence            3  333444467888888887777777777776666443

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.30  E-value=5  Score=38.05  Aligned_cols=256  Identities=14%  Similarity=0.060  Sum_probs=132.6

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhc---
Q 016714           83 VWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEH---  159 (384)
Q Consensus        83 l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~---  159 (384)
                      ..+++...+..|++.|.+.+++. +..... ...-.+..++.-|-++++.+++.++..+|+-+...   ....-+..   
T Consensus       267 a~dp~a~~r~~a~r~L~~~as~~-P~kv~t-h~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~---~~~~~l~~~~l  341 (533)
T KOG2032|consen  267 ATDPSAKSRGMACRGLGNTASGA-PDKVRT-HKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK---ASNDDLESYLL  341 (533)
T ss_pred             ccCchhHHHHHHHHHHHHHhccC-cHHHHH-hHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh---hhhcchhhhch
Confidence            34556678888999999999873 222222 22234555666565555589999999999887652   11111122   


Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHhhhC--CCCchhhHHHh--cCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC
Q 016714          160 GAVPMFVQLLSSGSDDVREQAVWALGNVAG--DSPSCRDLVLS--SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP  235 (384)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~--~~~~~~~~i~~--~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~  235 (384)
                      ++.-.+..+..+.+++++..+..+++.++.  +.+ .++.+.+  .+...+++-.| +++++.+. .||......|.  |
T Consensus       342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~-~e~~Fte~v~k~~~~lllhl-~d~~p~va-~ACr~~~~~c~--p  416 (533)
T KOG2032|consen  342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGG-WEEFFTEQVKKRLAPLLLHL-QDPNPYVA-RACRSELRTCY--P  416 (533)
T ss_pred             hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCC-chhhhHHHHHhccccceeee-CCCChHHH-HHHHHHHHhcC--c
Confidence            234456667788999999999988888763  221 3333332  12334555555 45555443 34444444443  3


Q ss_pred             CCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714          236 PTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT  315 (384)
Q Consensus       236 ~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (384)
                      +.......++++...+....  ..-.-+.-|++. +....++....+     ......++++.-+.++..+...-++..-
T Consensus       417 ~l~rke~~~~~q~~ld~~~~--~~q~Fyn~~c~~-L~~i~~d~l~~~-----~t~~~~~f~sswe~vr~aavl~t~~~vd  488 (533)
T KOG2032|consen  417 NLVRKELYHLFQESLDTDMA--RFQAFYNQWCIQ-LNHIHPDILMLL-----LTEDQHIFSSSWEQVREAAVLKTTRSVD  488 (533)
T ss_pred             hhHHHHHHHHHhhhhHHhHH--HHHHHHHHHHHH-HhhhCHHHHHHH-----HHhchhheecchHHHHHHHHHHHHHHHH
Confidence            33333334444422211110  000011122221 111112221111     1223334455556777777777777764


Q ss_pred             CChHHHHHHHH-cCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714          316 GDDAQTQFVID-NGVLPCLYQLLTQNHKKSIKKEACWTISNIT  357 (384)
Q Consensus       316 ~~~~~~~~i~~-~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  357 (384)
                      ..........+ .-+...+..+...+ .+++++.|.-++.-+.
T Consensus       489 ~l~~~~c~~~d~~qL~~~ls~l~~dp-~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  489 SLVRAACSSADGLQLRSSLSTLWRDP-RPEVTDSARKALDLLS  530 (533)
T ss_pred             HhHHHHHHHhhHHHHHHHHHHHccCC-CchhHHHHHHHhhhHh
Confidence            43322222222 12333455555556 8889988887776544

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.27  E-value=1.2  Score=43.87  Aligned_cols=145  Identities=19%  Similarity=0.149  Sum_probs=105.2

Q ss_pred             CCHHHHHHhhcC----CCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCC
Q 016714          117 GVVPRFVEFLGR----HDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNVAGDS  191 (384)
Q Consensus       117 g~i~~Lv~lL~~----~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~  191 (384)
                      ..-|.+.+...+    ++ +.++..|.-+|..+..-+.+...     .-+|.|+..+. +++|.++.+|+-+||.++...
T Consensus       892 ~F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf  965 (1128)
T COG5098         892 NFKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF  965 (1128)
T ss_pred             hhhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence            344555556554    44 99999999999887654333322     34788999887 799999999999999887543


Q ss_pred             CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 016714          192 PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYL  271 (384)
Q Consensus       192 ~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l  271 (384)
                      ....+.     .-..|.+.| .+.+..+++.++.++.+|.-..    ...+.|-++.++.+|..+|.++..-|=..+..+
T Consensus       966 N~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098         966 NTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred             hhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence            322222     234566666 6678889999999999888653    234578899999999999998877777777777


Q ss_pred             ccCChH
Q 016714          272 SDGPND  277 (384)
Q Consensus       272 ~~~~~~  277 (384)
                      +..+..
T Consensus      1036 a~KdNt 1041 (1128)
T COG5098        1036 AKKDNT 1041 (1128)
T ss_pred             Hhcccc
Confidence            766554

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.19  E-value=0.27  Score=40.95  Aligned_cols=123  Identities=20%  Similarity=0.138  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHhhhhcCCCCCC-h---------------hhhhchHHHHHHhhcc------CCHhHHHHHHHHHHHhccC
Q 016714          217 LSMLRNATWTLSNFCRGKPPTP-F---------------EQVKPALPILQRLIHL------NDEEVLTDACWALSYLSDG  274 (384)
Q Consensus       217 ~~~~~~a~~~L~~L~~~~~~~~-~---------------~~~~~~~~~L~~lL~~------~~~~i~~~a~~~l~~l~~~  274 (384)
                      ......++..|+||++.+.... .               ......+..|+.++..      +...-..+.+..+.|++..
T Consensus         9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~   88 (192)
T PF04063_consen    9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL   88 (192)
T ss_pred             cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence            3355566777777777542211 0               1113455666666543      3355677888999999987


Q ss_pred             ChHHHHHHHHc--CC--hHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH--cCchHHHHHHhccC
Q 016714          275 PNDKIQAVIEA--GV--CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVID--NGVLPCLYQLLTQN  340 (384)
Q Consensus       275 ~~~~~~~~~~~--g~--~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~--~g~l~~L~~ll~~~  340 (384)
                      ...+. .+++.  +.  +..|+.++.+.+..-+.-++.+|-|+|...+.+...+-+  .+++|.|+--|..+
T Consensus        89 ~~gR~-~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp  159 (192)
T PF04063_consen   89 PEGRQ-FFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP  159 (192)
T ss_pred             HHHHH-HHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence            66554 44443  34  788888888886666677999999999977777443332  47888877777755

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.14  E-value=0.27  Score=39.68  Aligned_cols=145  Identities=18%  Similarity=0.155  Sum_probs=92.9

Q ss_pred             ChHHHHHhhc--CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCC
Q 016714          161 AVPMFVQLLS--SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP  238 (384)
Q Consensus       161 ~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~  238 (384)
                      .++.++..|.  ...++++.++.-++..+-   +..++...+  .+...+..+....+.+-...++.++..+-...|...
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~--~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~   78 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE--KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG   78 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH--HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence            3455555554  366789999999998884   223333222  333444433344455566677777887777654433


Q ss_pred             hhhh--hchHHHHHHhhc--cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC-CCChh-hHHHHHHHHHH
Q 016714          239 FEQV--KPALPILQRLIH--LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM-HPSAT-VLIPALRTVGN  312 (384)
Q Consensus       239 ~~~~--~~~~~~L~~lL~--~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~-~~~~~-v~~~a~~~l~n  312 (384)
                      ....  .++++.+..+..  ..+..+...++.+|..=|.. ...... +...+++.|...++ ++++. ++..|+-+|.-
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            3333  788899999998  78888999999998876544 334434 44456899999995 55555 78888777653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.10  E-value=1.4  Score=36.33  Aligned_cols=141  Identities=19%  Similarity=0.157  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHhcC-Cch----hHHHHHh------cCChHHHHH-hhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhc
Q 016714          134 LQFEAAWALTNVASG-TSE----HTRVVIE------HGAVPMFVQ-LLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSS  201 (384)
Q Consensus       134 ~~~~a~~~L~nl~~~-~~~----~~~~i~~------~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~  201 (384)
                      +|..|+.+|..++.. ++.    ....++-      .+.-+.|+. ++.++++.+|..|+.+|..+-.+...+-....+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            566677777766664 111    1111221      123344444 5678899999999999999875543221111111


Q ss_pred             C-------------------ChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCC--ChhhhhchHHHHHHhhccCCHhH
Q 016714          202 G-------------------ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT--PFEQVKPALPILQRLIHLNDEEV  260 (384)
Q Consensus       202 g-------------------~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~~~~~~L~~lL~~~~~~i  260 (384)
                      +                   ....|+..|....+..+...++.++..|....|-.  .......++..+..++.+.|.++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence            1                   23345666655667788889999999999886543  33444667777778888999999


Q ss_pred             HHHHHHHHHHhccC
Q 016714          261 LTDACWALSYLSDG  274 (384)
Q Consensus       261 ~~~a~~~l~~l~~~  274 (384)
                      +..++.+++-+...
T Consensus       162 ~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  162 RVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999887654

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.09  E-value=0.98  Score=43.35  Aligned_cols=149  Identities=19%  Similarity=0.141  Sum_probs=94.8

Q ss_pred             HhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHh-hcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcC
Q 016714           82 GVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEF-LGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG  160 (384)
Q Consensus        82 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~l-L~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g  160 (384)
                      ++.+.++-.+..++-.+.--..+.  .      ..|++..++.. .++.+ .+++..|.-+|+-+|..++         .
T Consensus       524 ll~d~ds~lRy~G~fs~alAy~GT--g------n~~vv~~lLh~avsD~n-DDVrRAAViAlGfvc~~D~---------~  585 (926)
T COG5116         524 LLYDKDSILRYNGVFSLALAYVGT--G------NLGVVSTLLHYAVSDGN-DDVRRAAVIALGFVCCDDR---------D  585 (926)
T ss_pred             HhcCchHHhhhccHHHHHHHHhcC--C------cchhHhhhheeecccCc-hHHHHHHHHheeeeEecCc---------c
Confidence            444556666666555554333322  1      24677788777 56666 7999999999999988633         4


Q ss_pred             ChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh
Q 016714          161 AVPMFVQLLS-SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF  239 (384)
Q Consensus       161 ~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~  239 (384)
                      .++..+.+|. +.+..++...+.+||-.|......  .     +++. ++.|..+...-++..|+-+++.+.......-.
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~--~-----a~di-L~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Ln  657 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK--V-----ATDI-LEALMYDTNDFVRQSAMIAVGMILMQCNPELN  657 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--H-----HHHH-HHHHhhCcHHHHHHHHHHHHHHHHhhcCcccC
Confidence            5666777775 578999999999999888655321  1     2233 33333666666777777777766654333333


Q ss_pred             hhhhchHHHHHHhhccC
Q 016714          240 EQVKPALPILQRLIHLN  256 (384)
Q Consensus       240 ~~~~~~~~~L~~lL~~~  256 (384)
                      ..+.++...+.+++...
T Consensus       658 p~v~~I~k~f~~vI~~K  674 (926)
T COG5116         658 PNVKRIIKKFNRVIVDK  674 (926)
T ss_pred             hhHHHHHHHHHHHHhhh
Confidence            44466666666666443

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.08  E-value=0.56  Score=46.09  Aligned_cols=128  Identities=18%  Similarity=0.149  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC
Q 016714          219 MLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP  298 (384)
Q Consensus       219 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~  298 (384)
                      +.+-++..+..|-..+  +....+.+.+-.+++...+.+..++..+|..|..+.+...+ ++.-+-.++...+..-+.+.
T Consensus        62 Il~fla~fv~sl~q~d--~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Dr  138 (892)
T KOG2025|consen   62 ILSFLARFVESLPQLD--KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDR  138 (892)
T ss_pred             HHHHHHHHHHhhhccC--chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhcc
Confidence            4444444444444332  23346688888888989999999999999999999874322 22223346677888888888


Q ss_pred             ChhhHHHHHHHHHHhhcCC-hHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHH
Q 016714          299 SATVLIPALRTVGNIVTGD-DAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN  355 (384)
Q Consensus       299 ~~~v~~~a~~~l~nl~~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  355 (384)
                      .+.|+..|+.+|+.+=..+ ++.      ..+...+..++++.++++||+.|...+.+
T Consensus       139 ep~VRiqAv~aLsrlQ~d~~dee------~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  139 EPNVRIQAVLALSRLQGDPKDEE------CPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             CchHHHHHHHHHHHHhcCCCCCc------ccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            9999999999999986321 111      24566788888887789999986555443

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.83  E-value=3.4  Score=34.42  Aligned_cols=146  Identities=16%  Similarity=0.147  Sum_probs=93.2

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      -++.+++...+++..++..|+..+.-++...=-.|..      .+|.++.+..+++ +.++..|...+..+....+....
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~   81 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE   81 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence            3678888888999999999999999777654223333      5899999999988 99999999999999875554444


Q ss_pred             HHHhcCChHHHHHhh---cCC-CHHH---HHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc-------hhHHH
Q 016714          155 VVIEHGAVPMFVQLL---SSG-SDDV---REQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS-------KLSML  220 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL---~~~-~~~v---~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~-------~~~~~  220 (384)
                      .-...| +..-..+-   ..+ ....   ....+..|..+...+...|..+     +..|++.+....       ...-.
T Consensus        82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l  155 (187)
T PF12830_consen   82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL  155 (187)
T ss_pred             HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence            333333 22222221   111 1111   4455666667776665565554     446666664322       33445


Q ss_pred             HHHHHHHhhhhcC
Q 016714          221 RNATWTLSNFCRG  233 (384)
Q Consensus       221 ~~a~~~L~~L~~~  233 (384)
                      ....++..||+.-
T Consensus       156 ~~~~Fla~nLA~l  168 (187)
T PF12830_consen  156 DFLLFLAENLATL  168 (187)
T ss_pred             HHHHHHHHHHhcC
Confidence            5666666777765

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.73  E-value=4.2  Score=40.69  Aligned_cols=184  Identities=17%  Similarity=0.162  Sum_probs=103.0

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChh
Q 016714          161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE  240 (384)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~  240 (384)
                      ..+.+-.++++....+.-.|+.++.++....+.  . +..  .+..|--++ +.+...++-.|..+|..++...|...  
T Consensus       246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~-l~p--avs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v--  317 (865)
T KOG1078|consen  246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--E-LAP--AVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAV--  317 (865)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHhhccccCHh--h-cch--HHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCccc--
Confidence            345566677777888888999998888755431  1 111  333333344 67777788889999998888765322  


Q ss_pred             hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 016714          241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ  320 (384)
Q Consensus       241 ~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  320 (384)
                        ..+-.-|-.++...+-.+...|...+..  .+.+..+..+.+.  +...+.-++++..-+...|++++++.-...   
T Consensus       318 --~~cN~elE~lItd~NrsIat~AITtLLK--TG~e~sv~rLm~q--I~~fv~disDeFKivvvdai~sLc~~fp~k---  388 (865)
T KOG1078|consen  318 --TVCNLDLESLITDSNRSIATLAITTLLK--TGTESSVDRLMKQ--ISSFVSDISDEFKIVVVDAIRSLCLKFPRK---  388 (865)
T ss_pred             --cccchhHHhhhcccccchhHHHHHHHHH--hcchhHHHHHHHH--HHHHHHhccccceEEeHHHHHHHHhhccHH---
Confidence              2223334445555555555544444433  3444444444322  444454455555555666666666554211   


Q ss_pred             HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 016714          321 TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV  366 (384)
Q Consensus       321 ~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~  366 (384)
                           ..+.++.|..+|......+-++...-++..++..++++-..
T Consensus       389 -----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~  429 (865)
T KOG1078|consen  389 -----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER  429 (865)
T ss_pred             -----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH
Confidence                 12344555555554435566666666666666555544333

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.47  E-value=0.36  Score=47.34  Aligned_cols=107  Identities=18%  Similarity=0.149  Sum_probs=80.7

Q ss_pred             HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch
Q 016714          115 KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC  194 (384)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  194 (384)
                      -.|.+..++....+.+ ..+++.++.+|..+... .......+-.+....+..-+.+..+.++.+|+.+|+.+=++... 
T Consensus        83 V~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d-  159 (892)
T KOG2025|consen   83 VAGTFYHLLRGTESKD-KKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD-  159 (892)
T ss_pred             HHHHHHHHHhcccCcc-hhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-
Confidence            3466777788777877 79999999999998874 33344444446677777777788899999999999999754322 


Q ss_pred             hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHh
Q 016714          195 RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLS  228 (384)
Q Consensus       195 ~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~  228 (384)
                          -+..+...+..++.+++++++++.++..+.
T Consensus       160 ----ee~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  160 ----EECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             ----CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence                133467788899988899999998876554

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=93.38  E-value=4.6  Score=39.91  Aligned_cols=257  Identities=12%  Similarity=0.122  Sum_probs=143.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHH
Q 016714           77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVV  156 (384)
Q Consensus        77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i  156 (384)
                      -.++..+.-.+.+.+..-...|.+.+    +.--+.++..-++|.|+..+..++...-....+.-++..... .+     
T Consensus       257 ~~fLeel~lks~~eK~~Ff~~L~~~l----~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e-----  326 (690)
T KOG1243|consen  257 LLFLEELRLKSVEEKQKFFSGLIDRL----DNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE-----  326 (690)
T ss_pred             HHHHHhcccCcHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----
Confidence            34444555556666555555555432    222344566677777777776554112222222333333332 12     


Q ss_pred             HhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714          157 IEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP  236 (384)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~  236 (384)
                      .+.+.+|.|++++.+.+..+|-..+.-+-++...   ....+++.-+++.+..-+ .+.+..++...+.++..|+..-..
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence            4567889999999998888887666555555433   334456666777777777 677777888888777777653211


Q ss_pred             CChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCC-hHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714          237 TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGV-CPRLVELLMHPSATVLIPALRTVGNIVT  315 (384)
Q Consensus       237 ~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~-~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (384)
                      .  ..-...+..+.++-..++..++....-|++.++.+.....    ..++ +..+..-+.++-..-+..+.+.+.....
T Consensus       403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~  476 (690)
T KOG1243|consen  403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQE  476 (690)
T ss_pred             h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence            1  1223455555555455567788888888888776533221    2222 3334444555555566666666554433


Q ss_pred             CChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714          316 GDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT  357 (384)
Q Consensus       316 ~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  357 (384)
                      .-+..   =+...++|.+..+.-++ +..+|..|--++...-
T Consensus       477 ~~~~~---~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl  514 (690)
T KOG1243|consen  477 YFDQS---EVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFL  514 (690)
T ss_pred             ccchh---hhhhhccccccccccCc-ccchhhHHHHHHHHHH
Confidence            22211   12234666666666666 5556655555544443

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.36  E-value=2.2  Score=42.24  Aligned_cols=127  Identities=20%  Similarity=0.149  Sum_probs=87.5

Q ss_pred             CChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHh-hccCCHhHHHHHHHHHHHhccCChHHH
Q 016714          202 GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV-KPALPILQRL-IHLNDEEVLTDACWALSYLSDGPNDKI  279 (384)
Q Consensus       202 g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~~~L~~l-L~~~~~~i~~~a~~~l~~l~~~~~~~~  279 (384)
                      .+++.|...+ .+.+..++..++..+..+...-+   ...+ ..++|.+-.+ +.+.+..++.+++-|++.+.+.-    
T Consensus       389 ~IlplL~~S~-~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l----  460 (700)
T KOG2137|consen  389 KILPLLYRSL-EDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL----  460 (700)
T ss_pred             HHHHHHHHHh-cCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH----
Confidence            3566666666 67788888888888887776532   3333 5677776655 46678899999999999997321    


Q ss_pred             HHHHHcCChHHHHH---hcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC
Q 016714          280 QAVIEAGVCPRLVE---LLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN  340 (384)
Q Consensus       280 ~~~~~~g~~~~L~~---lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~  340 (384)
                         -...+++.+..   .....++.+....+++.-++....... ..++.+.++|.+..+...+
T Consensus       461 ---D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  461 ---DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             ---HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence               12233444444   445678888888888888887654443 4456678899988888776

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=93.36  E-value=1.3  Score=44.56  Aligned_cols=194  Identities=18%  Similarity=0.126  Sum_probs=107.0

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHHhhhCCCCc
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS----GSDDVREQAVWALGNVAGDSPS  193 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~  193 (384)
                      .+..+.+++....  --..+|++.|..+......-...     .+..+..++.+    .++.++..|+.+++.+......
T Consensus       396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            3556667776644  22334555555554432232322     34445555543    5678888899898888632110


Q ss_pred             ---------hhhHHHhcCChHHHHHHhc---ccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccC---CH
Q 016714          194 ---------CRDLVLSSGALMPLLAQLN---EHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLN---DE  258 (384)
Q Consensus       194 ---------~~~~i~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~---~~  258 (384)
                               ..........++.+...+.   ...+.+-...++.+|.|+-..          ..++.+..++...   +.
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence                     1122223346777777775   233556777888999998653          5778888888666   67


Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHH
Q 016714          259 EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH--PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQL  336 (384)
Q Consensus       259 ~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~l  336 (384)
                      .++..|+|++..+....++.+        .+.+.+++.+  .+.++|..|+.+|-.   .+|..       ..+..+...
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~-------~~l~~i~~~  600 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR---CNPSP-------SVLQRIAQS  600 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH---T---H-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH-------HHHHHHHHH
Confidence            899999999999877766543        3556666633  456788888766554   22322       134556667


Q ss_pred             hccCCchhHH
Q 016714          337 LTQNHKKSIK  346 (384)
Q Consensus       337 l~~~~~~~v~  346 (384)
                      +....+..+.
T Consensus       601 l~~E~~~QV~  610 (618)
T PF01347_consen  601 LWNEPSNQVA  610 (618)
T ss_dssp             HTT-S-HHHH
T ss_pred             HhhCchHHHH
Confidence            7655344443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=93.28  E-value=5.5  Score=35.15  Aligned_cols=222  Identities=15%  Similarity=0.104  Sum_probs=129.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC--CCChHHHHHHHHHHHHHhcCCchhHHHH
Q 016714           79 MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR--HDMPQLQFEAAWALTNVASGTSEHTRVV  156 (384)
Q Consensus        79 lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~~~~~~a~~~L~nl~~~~~~~~~~i  156 (384)
                      |=..|.++|+..+..|+..|..++..-  ++ . .+...-+..|++++.+  .| ......++..+..+.....-.....
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~l--p~-~-~L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~~~~~~~   78 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERL--PP-D-FLSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKNFSPESA   78 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhC--CH-h-hccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcCCChhhH
Confidence            345678899999999999999888743  21 1 1222235666666543  33 4455555666666654322111110


Q ss_pred             HhcCChHHHHHhhc--CCCHHHHHHHHHHHHhhhCCCCchhhHHH--hcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          157 IEHGAVPMFVQLLS--SGSDDVREQAVWALGNVAGDSPSCRDLVL--SSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       157 ~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~i~--~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                      .  ..+..+..-..  +.....|..+...|..+..+..   +.+.  ..+.+..++..+....|+.-+..+...+..+..
T Consensus        79 ~--~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~  153 (262)
T PF14500_consen   79 V--KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ  153 (262)
T ss_pred             H--HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            0  12222222111  2345677777888887765532   2222  234677788888667788888888888777776


Q ss_pred             CCCCCChhhhhchHHHHHHhh----c-c-CCH--hHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHH
Q 016714          233 GKPPTPFEQVKPALPILQRLI----H-L-NDE--EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLI  304 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL----~-~-~~~--~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~  304 (384)
                      .-+.  ......+++.+..+.    . . +|+  -...+...+|..+....+...     .-.+|.|++-|.++.+.++.
T Consensus       154 ~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K~  226 (262)
T PF14500_consen  154 EFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVKL  226 (262)
T ss_pred             hccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHHH
Confidence            6442  222233444433332    1 1 122  234455555655554444322     34589999999999999999


Q ss_pred             HHHHHHHHhhcCC
Q 016714          305 PALRTVGNIVTGD  317 (384)
Q Consensus       305 ~a~~~l~nl~~~~  317 (384)
                      .++.+|...+...
T Consensus       227 D~L~tL~~c~~~y  239 (262)
T PF14500_consen  227 DSLQTLKACIENY  239 (262)
T ss_pred             HHHHHHHHHHHHC
Confidence            9999999887543

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.17  E-value=0.49  Score=39.31  Aligned_cols=109  Identities=11%  Similarity=0.188  Sum_probs=73.1

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHH-HHhcCCchhHHHHHhcCChHHHHHhhcC---------CCHHHHHHHHHHHHhhh
Q 016714          119 VPRFVEFLGRHDMPQLQFEAAWALT-NVASGTSEHTRVVIEHGAVPMFVQLLSS---------GSDDVREQAVWALGNVA  188 (384)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~-nl~~~~~~~~~~i~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~nl~  188 (384)
                      ...+++.|.+.....   ..+.-|. .|-..+......|++.|++..|+.+|..         .+..+...++.||..|.
T Consensus        68 p~~~i~~L~~~~~~~---~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   68 PEWYIKKLKSRPSTS---KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHTTT--HH---HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccCccH---HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            445677776544221   2222222 2223345677888889999999998853         45678889999999988


Q ss_pred             CCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714          189 GDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       189 ~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~  231 (384)
                      .........+...+.+..|+..| .+++..++..++..|+.+|
T Consensus       145 n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            76665555555677888888888 6778889999999998887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=93.02  E-value=4.4  Score=38.93  Aligned_cols=158  Identities=14%  Similarity=0.151  Sum_probs=107.5

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC---hHHHHHHHHHHHHHhcCCch
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDM---PQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~---~~~~~~a~~~L~nl~~~~~~  151 (384)
                      ....+.+.+.+++...+..|+..+..+ |.+ ......++...++..|.+++.+++.   .++...++.++..+-.... 
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-  160 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSL-SLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-  160 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhc-ccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence            346778888999999999999888876 433 5668889999999999999988762   3444455555554443221 


Q ss_pred             hHHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714          152 HTRVVIEHGAVPMFVQLLS--SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN  229 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~  229 (384)
                      .....+....|.....+..  ..+..+...|+..|-++...+...++.+.+.--+..|+..+ +..+..+...+...+-.
T Consensus       161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA  239 (713)
T ss_pred             eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence            1111122222333333332  24566777888888888887777788888888899999999 66677777777777777


Q ss_pred             hhcCCCC
Q 016714          230 FCRGKPP  236 (384)
Q Consensus       230 L~~~~~~  236 (384)
                      +....|+
T Consensus       240 l~~~a~~  246 (713)
T KOG2999|consen  240 LFRKAPD  246 (713)
T ss_pred             HHhhCCh
Confidence            7766543

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=92.72  E-value=8.6  Score=35.93  Aligned_cols=257  Identities=16%  Similarity=0.187  Sum_probs=132.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhc----C------CCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           85 SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLG----R------HDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        85 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~----~------~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      +.+.+.+..|-..|.+.+....+.+-...+.. -++.+++++.    .      +.+..+..+|+.+|+.+... ++...
T Consensus         4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~-k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~~   81 (372)
T PF12231_consen    4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD-KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIVS   81 (372)
T ss_pred             cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHHh
Confidence            34555666666666666554322222222211 1444444443    1      11268889999999998874 44444


Q ss_pred             HHHhcC---ChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc---c-cchhHHHHHHHH
Q 016714          155 VVIEHG---AVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN---E-HSKLSMLRNATW  225 (384)
Q Consensus       155 ~i~~~g---~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~---~-~~~~~~~~~a~~  225 (384)
                      .+-+..   .+...+..+.+  .+..+...++|+|..---.     ..++....+..++..+.   + -....+....+.
T Consensus        82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~  156 (372)
T PF12231_consen   82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISERLN  156 (372)
T ss_pred             hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHHHHH
Confidence            433322   34555555543  4567888888887753222     22334444555555442   2 335567788888


Q ss_pred             HHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc--CCh-HHHH---HHHHc----C-----ChHH
Q 016714          226 TLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSD--GPN-DKIQ---AVIEA----G-----VCPR  290 (384)
Q Consensus       226 ~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~--~~~-~~~~---~~~~~----g-----~~~~  290 (384)
                      ++.+|....|..-......-+|.++..+-+....++..|..++..+..  +.. ....   ...+.    +     +.+.
T Consensus       157 i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  236 (372)
T PF12231_consen  157 IYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCER  236 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHH
Confidence            888888875544333445577777777766677776665554444332  111 1111   11111    2     2334


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHhhcCChHH-HHHHHHcCchHHHHHHhccCCchhHHHHHH
Q 016714          291 LVELLMHPSATVLIPALRTVGNIVTGDDAQ-TQFVIDNGVLPCLYQLLTQNHKKSIKKEAC  350 (384)
Q Consensus       291 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~  350 (384)
                      |..++.+.+.....+-+|..--..-++... ....+ ...+...-..+.++ ++.+|.+|.
T Consensus       237 L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~-d~~~k~~A~  295 (372)
T PF12231_consen  237 LKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSS-DPQVKIQAF  295 (372)
T ss_pred             HHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCC-CHHHHHHHH
Confidence            555555534333444444333333333211 11111 13455555667777 888888863

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=92.68  E-value=5.7  Score=36.95  Aligned_cols=210  Identities=14%  Similarity=0.136  Sum_probs=112.7

Q ss_pred             cCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC-CCChHHHHHHHHHHHHHhcCCch
Q 016714           74 ESIPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR-HDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        74 ~~l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      +.+..++..+.++ ....+..++-.|..-+..  ...+..+...|.+..+++.+.. ++++..-..++.++.-++.+ ..
T Consensus        21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~--~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d-~~   97 (361)
T PF07814_consen   21 DEVEYLLDGLESSSSSSVRRSSLLELASKCAD--PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRD-GL   97 (361)
T ss_pred             HHHHHHHhhcccCCCccHHHHHHHHHHHHhCC--HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccC-Cc
Confidence            4567788888743 356777777666655442  5677888899999999999944 44234444455555555553 22


Q ss_pred             hHHHHHhcCChHHHHHhhc--C------------------------------------------CCHHHHHHHHHHHHhh
Q 016714          152 HTRVVIEHGAVPMFVQLLS--S------------------------------------------GSDDVREQAVWALGNV  187 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~--~------------------------------------------~~~~v~~~a~~~L~nl  187 (384)
                      ....+.+.+....++.++.  .                                          ....-+..|..++-.+
T Consensus        98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l  177 (361)
T PF07814_consen   98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESL  177 (361)
T ss_pred             chhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHH
Confidence            2222223334444455544  0                                          0001112233333333


Q ss_pred             h--------------CCCCchhhHHHhcCChHHHHHHhcc----cc-----------hhHHHHHHHHHHhhhhcCCCCCC
Q 016714          188 A--------------GDSPSCRDLVLSSGALMPLLAQLNE----HS-----------KLSMLRNATWTLSNFCRGKPPTP  238 (384)
Q Consensus       188 ~--------------~~~~~~~~~i~~~g~i~~L~~~l~~----~~-----------~~~~~~~a~~~L~~L~~~~~~~~  238 (384)
                      +              ...+.+++.+.+.|++..++..+.+    ..           +......++++|-+.+...+...
T Consensus       178 ~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq  257 (361)
T PF07814_consen  178 VRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQ  257 (361)
T ss_pred             HHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccch
Confidence            1              1122345666777888888888742    10           11234456667776665543322


Q ss_pred             hhhh---hchHHH-HHHhh---ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcC
Q 016714          239 FEQV---KPALPI-LQRLI---HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAG  286 (384)
Q Consensus       239 ~~~~---~~~~~~-L~~lL---~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g  286 (384)
                      ....   .+.++. +..++   ......+...+++.+.|++.+++.....+...+
T Consensus       258 ~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~  312 (361)
T PF07814_consen  258 SYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK  312 (361)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence            2222   223332 22222   223355678888999999988866555554443

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=92.39  E-value=2.4  Score=37.52  Aligned_cols=159  Identities=20%  Similarity=0.155  Sum_probs=93.4

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcC--ChHHHHHhhc----CCCHHHHHHHHHHHHhhhCCCCc
Q 016714          120 PRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG--AVPMFVQLLS----SGSDDVREQAVWALGNVAGDSPS  193 (384)
Q Consensus       120 ~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g--~i~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~  193 (384)
                      ..+...+..=. ++-++-++-.+.-++.+ +.....+...+  ....+..++.    +..+..+-.++++++|+..... 
T Consensus        66 ~~~~~~~~~Wp-~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-  142 (268)
T PF08324_consen   66 ILLLKILLSWP-PESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-  142 (268)
T ss_dssp             HHHHHHHCCS--CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-
T ss_pred             HHHHHHHHhCC-CccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-
Confidence            34444443322 34566677777666553 44333343322  2344444433    2567888899999999998766 


Q ss_pred             hhhHHHhcC--ChHHHHHHhcccc---hhHHHHHHHHHHhhhhcCC--CCCChhhhhchHHHHHHhh-c-cCCHhHHHHH
Q 016714          194 CRDLVLSSG--ALMPLLAQLNEHS---KLSMLRNATWTLSNFCRGK--PPTPFEQVKPALPILQRLI-H-LNDEEVLTDA  264 (384)
Q Consensus       194 ~~~~i~~~g--~i~~L~~~l~~~~---~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~~L~~lL-~-~~~~~i~~~a  264 (384)
                      .+..+....  .+...+..+....   +..++..++.++.|++...  ..........++..+...+ . ..|++....+
T Consensus       143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~  222 (268)
T PF08324_consen  143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL  222 (268)
T ss_dssp             CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred             cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence            455555432  2333333332332   6788889999999998653  1112222334566666633 2 3689999999


Q ss_pred             HHHHHHhccCChHHHHH
Q 016714          265 CWALSYLSDGPNDKIQA  281 (384)
Q Consensus       265 ~~~l~~l~~~~~~~~~~  281 (384)
                      +-+++++...+....+.
T Consensus       223 LvAlGtL~~~~~~~~~~  239 (268)
T PF08324_consen  223 LVALGTLLSSSDSAKQL  239 (268)
T ss_dssp             HHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHHhccChhHHHH
Confidence            99999999776654443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=92.34  E-value=0.81  Score=33.09  Aligned_cols=79  Identities=9%  Similarity=0.075  Sum_probs=61.3

Q ss_pred             hHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH-HHHH
Q 016714          288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRA-QIQV  366 (384)
Q Consensus       288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~i~~  366 (384)
                      +...+..|.++.+.++..++..|..++....  ....--.+++..+...+.++ ++.|--.|.-++..++...++ .+..
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~vl~~   81 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDEVLPI   81 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHHHHHH
Confidence            4556677888899999999999999987665  11122246788899999999 899999999999999985554 6666


Q ss_pred             HHh
Q 016714          367 HDS  369 (384)
Q Consensus       367 l~~  369 (384)
                      +++
T Consensus        82 L~~   84 (92)
T PF10363_consen   82 LLD   84 (92)
T ss_pred             HHH
Confidence            654

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=91.94  E-value=15  Score=36.92  Aligned_cols=147  Identities=16%  Similarity=0.178  Sum_probs=93.9

Q ss_pred             cCCHHHHHHhhcCC-------CChHHHHHHHHHHHHHhc--CCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHh
Q 016714          116 AGVVPRFVEFLGRH-------DMPQLQFEAAWALTNVAS--GTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGN  186 (384)
Q Consensus       116 ~g~i~~Lv~lL~~~-------~~~~~~~~a~~~L~nl~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n  186 (384)
                      .|+++.+.+.|...       +++.-.+.|++.+.++.+  .......-+.+.-+++.++..++++..-++..++..+..
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            48899999999421       224445667888888766  334444445555677888888899889999999999999


Q ss_pred             hhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHH-HHHHhh---ccCCHhHHH
Q 016714          187 VAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALP-ILQRLI---HLNDEEVLT  262 (384)
Q Consensus       187 l~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~-~L~~lL---~~~~~~i~~  262 (384)
                      +..|-+   +..+-..+.+...+++ .+++..+...|+-++.-+..+.  .....+...+| .+-++|   ..-+.++..
T Consensus       487 ~eeDfk---d~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~--q~h~k~sahVp~tmekLLsLSn~feiD~LS  560 (970)
T COG5656         487 IEEDFK---DNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE--QSHEKFSAHVPETMEKLLSLSNTFEIDPLS  560 (970)
T ss_pred             HHHhcc---cchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch--hhhHHHHhhhhHHHHHHHHhcccccchHHH
Confidence            955543   3333334566667777 4577778888888888887764  22233333333 333333   333455666


Q ss_pred             HHHHHH
Q 016714          263 DACWAL  268 (384)
Q Consensus       263 ~a~~~l  268 (384)
                      .++..+
T Consensus       561 ~vMe~f  566 (970)
T COG5656         561 MVMESF  566 (970)
T ss_pred             HHHHHH
Confidence            555544

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=91.91  E-value=0.85  Score=32.97  Aligned_cols=72  Identities=10%  Similarity=0.024  Sum_probs=56.8

Q ss_pred             HHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 016714          246 LPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDA  319 (384)
Q Consensus       246 ~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~  319 (384)
                      +......|+++.+.++..++..|..|.....  .....-.+++..+...|.++++.|--.|+.+++.++...++
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            3445566778888899999999999998766  11222346788889999999999999999999999976654

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=91.80  E-value=8.7  Score=33.90  Aligned_cols=215  Identities=14%  Similarity=0.101  Sum_probs=120.9

Q ss_pred             HHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHH
Q 016714          121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLV  198 (384)
Q Consensus       121 ~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i  198 (384)
                      .|=..|.+++ +.+|..|..+|+.+...-+...   ....-+..|+.++.+  ++......++.++..+.........  
T Consensus         3 ~Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~--   76 (262)
T PF14500_consen    3 SLGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPE--   76 (262)
T ss_pred             chhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChh--
Confidence            3556778887 8999999999998776534221   222234555555443  4455555567777777643321111  


Q ss_pred             HhcCChHHHHHHhccc-----chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcc-CCHhHHHHHHHHHHHhc
Q 016714          199 LSSGALMPLLAQLNEH-----SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHL-NDEEVLTDACWALSYLS  272 (384)
Q Consensus       199 ~~~g~i~~L~~~l~~~-----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~i~~~a~~~l~~l~  272 (384)
                          ....+++.+.+.     .....+..+...+..+...........-...+..+++.+.. .||.-+..+...+..+.
T Consensus        77 ----~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~  152 (262)
T PF14500_consen   77 ----SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL  152 (262)
T ss_pred             ----hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence                223333333221     12345556666666666553211111224566666666654 47877777777766665


Q ss_pred             cCChHHHHHHHHcCChHHHHHhcCC---------C-Ch--hhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC
Q 016714          273 DGPNDKIQAVIEAGVCPRLVELLMH---------P-SA--TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN  340 (384)
Q Consensus       273 ~~~~~~~~~~~~~g~~~~L~~lL~~---------~-~~--~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~  340 (384)
                      ..-+-       ....+-+.+.+..         + ++  -.+..--..|.+..+.++....     -++|.|++=|.++
T Consensus       153 ~~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~  220 (262)
T PF14500_consen  153 QEFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDST  220 (262)
T ss_pred             Hhccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCC
Confidence            43221       1223333333321         1 22  2334444555555555554433     4788899999998


Q ss_pred             CchhHHHHHHHHHHHHhc
Q 016714          341 HKKSIKKEACWTISNITA  358 (384)
Q Consensus       341 ~~~~v~~~a~~~L~nl~~  358 (384)
                       .+.+|..+.-+|..++.
T Consensus       221 -~~~~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  221 -SPSVKLDSLQTLKACIE  237 (262)
T ss_pred             -CcHHHHHHHHHHHHHHH
Confidence             88899999999998886

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=91.62  E-value=5.8  Score=38.16  Aligned_cols=154  Identities=15%  Similarity=0.179  Sum_probs=106.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc---hhHHHHHHHHHHhhhhcCCCCCC
Q 016714          162 VPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS---KLSMLRNATWTLSNFCRGKPPTP  238 (384)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~---~~~~~~~a~~~L~~L~~~~~~~~  238 (384)
                      ...+...+.+++..-+..++.-|..++.+.. +...++...++..|..++.+..   ..+++...+.+++.+-...- ..
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs  162 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS  162 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence            3456667777777777778888888887766 4566677888999999995543   34566666666666665432 11


Q ss_pred             hhhh-hchHHHHHHhh--ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714          239 FEQV-KPALPILQRLI--HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT  315 (384)
Q Consensus       239 ~~~~-~~~~~~L~~lL--~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (384)
                      ...+ ..++-....+.  ...+..+...|+..+-++..+++...+.+.+.--+..|+..|...+..++..|+..+..+..
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            1111 22222222222  33456788889999999988888778888888889999999998888888888887777764


Q ss_pred             CC
Q 016714          316 GD  317 (384)
Q Consensus       316 ~~  317 (384)
                      ..
T Consensus       243 ~a  244 (713)
T KOG2999|consen  243 KA  244 (713)
T ss_pred             hC
Confidence            43

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.62  E-value=1.1  Score=42.28  Aligned_cols=142  Identities=18%  Similarity=0.141  Sum_probs=85.9

Q ss_pred             cCCCHHHHHHHHHHHHhhhCCCCc-hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChh-hhhchHH
Q 016714          170 SSGSDDVREQAVWALGNVAGDSPS-CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE-QVKPALP  247 (384)
Q Consensus       170 ~~~~~~v~~~a~~~L~nl~~~~~~-~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~~~  247 (384)
                      .+++..++..|+..|+|.+...|. ++..  ..-.+..++.-|.+..+.++.-.+..+|..+.....+.... ...++.-
T Consensus       268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial  345 (533)
T KOG2032|consen  268 TDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL  345 (533)
T ss_pred             cCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence            357889999999999999988543 2221  12256667777756667888888888888777654332222 2234444


Q ss_pred             HHHHhhccCCHhHHHHHHHHHHHhccCChHH-HHHHHH--cCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714          248 ILQRLIHLNDEEVLTDACWALSYLSDGPNDK-IQAVIE--AGVCPRLVELLMHPSATVLIPALRTVGNIV  314 (384)
Q Consensus       248 ~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~-~~~~~~--~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (384)
                      .+..+..+.+++.+..+...++.|+...... ...+.+  .+-...++-.|.++++.+ ..||+.....+
T Consensus       346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c  414 (533)
T KOG2032|consen  346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTC  414 (533)
T ss_pred             HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhc
Confidence            5677788899999999988888776532211 111221  112233333445566544 34555554444

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.17  E-value=3.5  Score=40.79  Aligned_cols=146  Identities=15%  Similarity=0.117  Sum_probs=95.4

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHhcC-Cc----hhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch
Q 016714          120 PRFVEFLGRHDMPQLQFEAAWALTNVASG-TS----EHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC  194 (384)
Q Consensus       120 ~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~-~~----~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  194 (384)
                      |.+..-|+-.+ ..+|..|+..+.+.--- ++    +..+.+++ .-...+..+|+++-+.++..|...++.+....-. 
T Consensus       177 p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe-  253 (1005)
T KOG1949|consen  177 PILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE-  253 (1005)
T ss_pred             HHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-
Confidence            33444555567 79999999999886321 12    33444554 3467889999999999999999888877643211 


Q ss_pred             hhHHHhcCC----hHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHH
Q 016714          195 RDLVLSSGA----LMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSY  270 (384)
Q Consensus       195 ~~~i~~~g~----i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~  270 (384)
                         ++...+    +..++.-+..++..+++......|..+..++  ........++|.+-..|+.+...++..+...|..
T Consensus       254 ---~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~  328 (1005)
T KOG1949|consen  254 ---MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK  328 (1005)
T ss_pred             ---HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence               111112    2233333333445677778888888887763  2234446677888888888889999888888777


Q ss_pred             hcc
Q 016714          271 LSD  273 (384)
Q Consensus       271 l~~  273 (384)
                      +-.
T Consensus       329 ik~  331 (1005)
T KOG1949|consen  329 IKA  331 (1005)
T ss_pred             HHh
Confidence            643

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.02  E-value=1.7  Score=38.52  Aligned_cols=140  Identities=16%  Similarity=0.158  Sum_probs=97.8

Q ss_pred             HHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHH
Q 016714          205 MPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIE  284 (384)
Q Consensus       205 ~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~  284 (384)
                      ...+..| .+.+......++..+..|+...++.-......++..+++-+.+....+-..||-+++.+...-...+..   
T Consensus        91 ~~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~---  166 (334)
T KOG2933|consen   91 KQALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ---  166 (334)
T ss_pred             HHHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            3445555 666777778888888888887665445555677778888888888888899999998887665444333   


Q ss_pred             cCChHHHHHhcCC----CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          285 AGVCPRLVELLMH----PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       285 ~g~~~~L~~lL~~----~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                        -++.++..|.+    ++--+++.|-.+|..++..-..+       .+++.|...+.+. .+.++..++.+..+...
T Consensus       167 --~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  167 --ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI  234 (334)
T ss_pred             --HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence              23444444422    33457788888888877543222       2567788888888 89999999998888875

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.01  E-value=6.3  Score=39.24  Aligned_cols=156  Identities=19%  Similarity=0.235  Sum_probs=89.4

Q ss_pred             ChHHHHHhhcC----CCHHHHHHHHHHHHhhhC----CCCchhhHHHhcCChHHHHHHhcc---cchhHHHHHHHHHHhh
Q 016714          161 AVPMFVQLLSS----GSDDVREQAVWALGNVAG----DSPSCRDLVLSSGALMPLLAQLNE---HSKLSMLRNATWTLSN  229 (384)
Q Consensus       161 ~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~~~~i~~~g~i~~L~~~l~~---~~~~~~~~~a~~~L~~  229 (384)
                      .+..+..++.+    .++.++..|+.+++++..    +.+.+...+ ....++.+...|..   ..+.+-...++.+|.|
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            34555666654    456788888888888763    222111111 12255566665532   2344445667777777


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhc---cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC--CChhhHH
Q 016714          230 FCRGKPPTPFEQVKPALPILQRLIH---LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH--PSATVLI  304 (384)
Q Consensus       230 L~~~~~~~~~~~~~~~~~~L~~lL~---~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~--~~~~v~~  304 (384)
                      +...          ..++.+..++.   ..+..++..|+|+|..++...+..+        -+.+.+++.+  .++++|.
T Consensus       473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi  534 (574)
T smart00638      473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM  534 (574)
T ss_pred             cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence            7664          34455555554   2346799999999999876555433        3455666543  4567887


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhH
Q 016714          305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSI  345 (384)
Q Consensus       305 ~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v  345 (384)
                      .|+..|-..   +|..       ..+..+...+....+..|
T Consensus       535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV  565 (574)
T smart00638      535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQV  565 (574)
T ss_pred             HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHH
Confidence            777665432   2222       134455666665534444

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=90.83  E-value=16  Score=35.26  Aligned_cols=247  Identities=13%  Similarity=0.133  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh
Q 016714           89 ALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL  168 (384)
Q Consensus        89 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l  168 (384)
                      ..+..|+..+...+..-+-.++..+.     ...-+++.....++.|..+...|..+..+......... .   ..+-.+
T Consensus         5 ~~R~~a~~~l~~~i~~~~~~~i~~iW-----~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-~---~fF~~I   75 (464)
T PF11864_consen    5 SERIKAAEELCESIQKYPLSSIEEIW-----YAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-A---EFFRDI   75 (464)
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHH-----HHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-H---HHHHHH
Confidence            45566666666665543233333322     22334555554467888888888888776443211111 0   111111


Q ss_pred             hcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc--------------------------hhHHHHH
Q 016714          169 LSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS--------------------------KLSMLRN  222 (384)
Q Consensus       169 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~--------------------------~~~~~~~  222 (384)
                      -....++-...-+.+|..|+.++... + ..+.++.+.|..-+...-                          +......
T Consensus        76 ~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (464)
T PF11864_consen   76 SDPSNDDDFDLRLEALIALTDNGRDI-D-FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSD  153 (464)
T ss_pred             hcCCCchhHHHHHHHHHHHHcCCcCc-h-hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHH
Confidence            22344444556667777777766654 2 245556666666552111                          2223444


Q ss_pred             HHHHHhhhhcCC-CCCChhhhhchHHHHHHhh-ccCCHhHHHHHHHHHHHhccC---ChHHHHHHHHcCChHHHHHhcCC
Q 016714          223 ATWTLSNFCRGK-PPTPFEQVKPALPILQRLI-HLNDEEVLTDACWALSYLSDG---PNDKIQAVIEAGVCPRLVELLMH  297 (384)
Q Consensus       223 a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~lL-~~~~~~i~~~a~~~l~~l~~~---~~~~~~~~~~~g~~~~L~~lL~~  297 (384)
                      .+..+.|+.... .......+.+++..+..+. .+.++.....++..+-.+..+   +.+....     ++..|....  
T Consensus       154 ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~-----~i~vLCsi~--  226 (464)
T PF11864_consen  154 LLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSP-----CIEVLCSIV--  226 (464)
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHH-----HHHHHhhHh--
Confidence            555555555554 3334444555666555553 233333344444444333322   2222111     123333332  


Q ss_pred             CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC-----CchhHHHHHHHHHHHHhcCC
Q 016714          298 PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN-----HKKSIKKEACWTISNITAGN  360 (384)
Q Consensus       298 ~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~-----~~~~v~~~a~~~L~nl~~~~  360 (384)
                      +......++-.++.||+...-.+       -.+..|..+|..+     .+..+-+-|...+.-+..+.
T Consensus       227 ~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~  287 (464)
T PF11864_consen  227 NSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS  287 (464)
T ss_pred             cccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence            22356677888888888533222       1345567777322     13445566777777776654

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=90.80  E-value=6.6  Score=39.72  Aligned_cols=157  Identities=19%  Similarity=0.223  Sum_probs=104.5

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .|..++..|.|.+..+...+-..+...+..++.+ +       ++..|+++.-..++.    .|+.+|..+-.  +..+ 
T Consensus         5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~-------l~~~l~~y~~~t~s~----~~~~il~~~~~--P~~K-   69 (668)
T PF04388_consen    5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP-W-------LVNGLVDYYLSTNSQ----RALEILVGVQE--PHDK-   69 (668)
T ss_pred             cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-H-------HHHHHHHHHhhcCcH----HHHHHHHhcCC--ccHH-
Confidence            5788999999999888888888888777654222 1       366777765444422    23344443321  2111 


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~  234 (384)
                           ..+..|-.++..  +.-+-.++..|+.+....|..-..+.+...+..|+++|..+.+..++..|+.+|..|.=.-
T Consensus        70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i  142 (668)
T PF04388_consen   70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI  142 (668)
T ss_pred             -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence                 123344444543  5677889999999999888777888999999999999988888888888888887776544


Q ss_pred             CCCChhhhhchHHHHHHhh
Q 016714          235 PPTPFEQVKPALPILQRLI  253 (384)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL  253 (384)
                      |.........++..+..++
T Consensus       143 p~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  143 PSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             cchhhHHHHHHHHHHHHHH
Confidence            4433333344445444444

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=90.68  E-value=2.1  Score=42.33  Aligned_cols=134  Identities=18%  Similarity=0.130  Sum_probs=91.6

Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCC
Q 016714          159 HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP  238 (384)
Q Consensus       159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~  238 (384)
                      ..++|.|..-+++.+..+++.++..+..++..-+   -..+..-++|.+-.+.....+..++.+++-++..+...   .+
T Consensus       388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---lD  461 (700)
T KOG2137|consen  388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---LD  461 (700)
T ss_pred             HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---HH
Confidence            3567788888888999999999999999874322   12233345666666655677888999999999888832   22


Q ss_pred             hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCC
Q 016714          239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS  299 (384)
Q Consensus       239 ~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~  299 (384)
                      ...+...++.+.+.....|+.+....+.+...+....... ..+..+.++|.++.+...+.
T Consensus       462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence            2233344445556667788998888888777766543332 24455678888888876654

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=90.61  E-value=7.1  Score=32.48  Aligned_cols=71  Identities=18%  Similarity=0.189  Sum_probs=54.3

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC  194 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  194 (384)
                      .++.++++..+++ ..++..|+.++.-+....-     +--..++|.|+.+..++++.++..|...+..+....+..
T Consensus         9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGL-----vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~   79 (187)
T PF12830_consen    9 YLKNILELCLSSD-DSVRLAALQVLELILRQGL-----VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL   79 (187)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCC-----CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence            3666777777777 8999999999987655210     001236899999999999999999999999998766543

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=90.45  E-value=5.3  Score=37.24  Aligned_cols=141  Identities=19%  Similarity=0.160  Sum_probs=81.0

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc------CCCHHHHHHHHHHHHhhhCCCC
Q 016714          119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS------SGSDDVREQAVWALGNVAGDSP  192 (384)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~  192 (384)
                      .+.+-.-++.++...-+..|+..|..++....+....++    ...+-.++.      +.+..-++.|+..++.++....
T Consensus       212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~  287 (370)
T PF08506_consen  212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGS  287 (370)
T ss_dssp             HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS-
T ss_pred             HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhc
Confidence            333333343333346778888899888864222222222    122333333      3567888999999999986553


Q ss_pred             chh------------hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhH
Q 016714          193 SCR------------DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEV  260 (384)
Q Consensus       193 ~~~------------~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i  260 (384)
                      ..+            ..+....++|.|.  -..+..+-++..|++.+..+-..   ........++|.++.+|.+++.-+
T Consensus       288 t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~---l~~~~l~~~~~~l~~~L~~~~~vv  362 (370)
T PF08506_consen  288 TTKSGVTQTNELVDVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQ---LPKEQLLQIFPLLVNHLQSSSYVV  362 (370)
T ss_dssp             -BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGG---S-HHHHHHHHHHHHHHTTSS-HHH
T ss_pred             cccCCcccccccccHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHhCCCCcch
Confidence            211            1122222333332  11233455777888888877664   234566889999999999999999


Q ss_pred             HHHHHHHH
Q 016714          261 LTDACWAL  268 (384)
Q Consensus       261 ~~~a~~~l  268 (384)
                      ..+|+.||
T Consensus       363 ~tyAA~~i  370 (370)
T PF08506_consen  363 HTYAAIAI  370 (370)
T ss_dssp             HHHHHHHH
T ss_pred             hhhhhhhC
Confidence            99998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=90.37  E-value=2.1  Score=45.93  Aligned_cols=130  Identities=16%  Similarity=0.128  Sum_probs=88.6

Q ss_pred             HHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCCh
Q 016714          221 RNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA  300 (384)
Q Consensus       221 ~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~  300 (384)
                      .++.|....++...+  -.....+++..++..|..+...++..|+.||+.+...++...   ....+-..+-.-+.+.+.
T Consensus       795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~Dssa  869 (1692)
T KOG1020|consen  795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSA  869 (1692)
T ss_pred             hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchh
Confidence            345555555554422  112235677778888888889999999999999998876421   222334445555667778


Q ss_pred             hhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 016714          301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNR  361 (384)
Q Consensus       301 ~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  361 (384)
                      .|++.|+-.+|..+...++....+.     +.+..-+.++ .-.|||.+..++..|+..+|
T Consensus       870 sVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDt-gvsVRKRvIKIlrdic~e~p  924 (1692)
T KOG1020|consen  870 SVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDT-GVSVRKRVIKILRDICEETP  924 (1692)
T ss_pred             HHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCC-chhHHHHHHHHHHHHHHhCC
Confidence            8999999999998887776655433     3455555555 67888888888888886444

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=90.31  E-value=2.7  Score=37.59  Aligned_cols=138  Identities=13%  Similarity=0.182  Sum_probs=76.6

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH-HHHHhcCChHHHHH----hhc--------CCCHHHHHHHHHHH
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT-RVVIEHGAVPMFVQ----LLS--------SGSDDVREQAVWAL  184 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~-~~i~~~g~i~~L~~----lL~--------~~~~~v~~~a~~~L  184 (384)
                      ++|.++.++++.+ +.++..++.+|..+....+... ..+.+.|..+.+-.    ++.        .++..+...+.-+|
T Consensus       120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            6899999999988 9999999999999988544333 33556675544433    333        35567888888888


Q ss_pred             HhhhCC----CCchhhHHHhcCChHHHHHHhcccc---hhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccC
Q 016714          185 GNVAGD----SPSCRDLVLSSGALMPLLAQLNEHS---KLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLN  256 (384)
Q Consensus       185 ~nl~~~----~~~~~~~i~~~g~i~~L~~~l~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~  256 (384)
                      ..++.-    +...+......-.-+.++.-+....   .+.+....+..+..+...-........+.++|.+.+.+.++
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            887431    1111221111111111222221222   35555555555555554422233333456666666655543

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=90.25  E-value=17  Score=34.56  Aligned_cols=191  Identities=12%  Similarity=0.111  Sum_probs=114.9

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhcCCc---hhHHHHHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHhhhCCC
Q 016714          122 FVEFLGRHDMPQLQFEAAWALTNVASGTS---EHTRVVIEHGAVPMFVQLLSS-------GSDDVREQAVWALGNVAGDS  191 (384)
Q Consensus       122 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~---~~~~~i~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~  191 (384)
                      +..++...+ ..-++.|+...+..+.+.+   ..++.+.+.-+++.+-++|.+       ++.-.+..++..|.-+|.+.
T Consensus        16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            556666655 6889999999999988633   456668887788888888875       23345666777888888765


Q ss_pred             Cch-hhHHHhcCChHHHHHHhcccchhH------HHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCC----HhH
Q 016714          192 PSC-RDLVLSSGALMPLLAQLNEHSKLS------MLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLND----EEV  260 (384)
Q Consensus       192 ~~~-~~~i~~~g~i~~L~~~l~~~~~~~------~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~----~~i  260 (384)
                      +-. ...+++  .||.|+..+....|++      +...+-.+|..++...+........|.++.+.++-.-.+    ..+
T Consensus        95 ElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al  172 (698)
T KOG2611|consen   95 ELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL  172 (698)
T ss_pred             hhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence            421 222333  6888899886555444      788888899988888555555556899998887654333    222


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 016714          261 LTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD  317 (384)
Q Consensus       261 ~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~  317 (384)
                      ...+...+..=.+.-.+....+..  ++..+..-+...+...+-..|+.|..+....
T Consensus       173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~~  227 (698)
T KOG2611|consen  173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSSE  227 (698)
T ss_pred             HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCC
Confidence            222221111111111122222211  1334444344445556667888888665433

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=90.14  E-value=11  Score=34.62  Aligned_cols=158  Identities=16%  Similarity=0.179  Sum_probs=108.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc-C-CHHHHHHhhcCCC----C--------hHHHHHHHH-
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-G-VVPRFVEFLGRHD----M--------PQLQFEAAW-  140 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g-~i~~Lv~lL~~~~----~--------~~~~~~a~~-  140 (384)
                      ++.+.+.|.++.......+++.|..+++.........+... + -.+.|-.++....    .        +++|..... 
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            57778888888888888999999999985535666666644 2 2445666664221    0        177777665 


Q ss_pred             HHHHHhcCCchhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHh-hhCCC---CchhhHHHhcCChHHHHHHhcccc
Q 016714          141 ALTNVASGTSEHTRVVIE-HGAVPMFVQLLSSGSDDVREQAVWALGN-VAGDS---PSCRDLVLSSGALMPLLAQLNEHS  215 (384)
Q Consensus       141 ~L~nl~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~n-l~~~~---~~~~~~i~~~g~i~~L~~~l~~~~  215 (384)
                      +|..+..+++..+..+++ .+.+..+.+.|..++.++....+.+|.. +..+.   ...+-.+.....+..|..+. ...
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly-~~~  216 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLY-SRD  216 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHh-ccc
Confidence            455566677777777776 4568888888988999999999999985 44443   22344455555677777755 444


Q ss_pred             hh----HHHHHHHHHHhhhhcCC
Q 016714          216 KL----SMLRNATWTLSNFCRGK  234 (384)
Q Consensus       216 ~~----~~~~~a~~~L~~L~~~~  234 (384)
                      ++    .+...+-..|..+|...
T Consensus       217 ~~~~~~~~~~~vh~fL~~lcT~p  239 (330)
T PF11707_consen  217 GEDEKSSVADLVHEFLLALCTDP  239 (330)
T ss_pred             CCcccchHHHHHHHHHHHHhcCC
Confidence            44    66677777777777653

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=90.10  E-value=2.5  Score=34.87  Aligned_cols=139  Identities=20%  Similarity=0.221  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHhhhCC-CCc-h---hhHHH------hcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-CC-------
Q 016714          176 VREQAVWALGNVAGD-SPS-C---RDLVL------SSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PP-------  236 (384)
Q Consensus       176 v~~~a~~~L~nl~~~-~~~-~---~~~i~------~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~-------  236 (384)
                      +|..|+.+|..++.. ++. .   =..++      ..+.-..|+..+..++++.++..++.++..|-.+. +.       
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            566677777776654 211 0   01111      22345667777778889999999999998887763 10       


Q ss_pred             ----CChhh--------hhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCChHHHHHHHHcCCh----HHHHHhcCCCC
Q 016714          237 ----TPFEQ--------VKPALPILQRLIHLN-DEEVLTDACWALSYLSDGPNDKIQAVIEAGVC----PRLVELLMHPS  299 (384)
Q Consensus       237 ----~~~~~--------~~~~~~~L~~lL~~~-~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~----~~L~~lL~~~~  299 (384)
                          ..+.-        +...-..|...|+.+ +..+....+.++..+....+...   .+.|++    ..+..++.+.|
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~r---L~~~ll~~~v~~v~~~l~~~d  158 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHR---LPPGLLTEVVTQVRPLLRHRD  158 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhh---cCHhHHHHHHHHHHHHHhcCC
Confidence                01100        122233445555444 67889999999999998866432   223444    44555667889


Q ss_pred             hhhHHHHHHHHHHhhcCC
Q 016714          300 ATVLIPALRTVGNIVTGD  317 (384)
Q Consensus       300 ~~v~~~a~~~l~nl~~~~  317 (384)
                      +.++..++.++|.+.+..
T Consensus       159 ~~v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  159 PNVRVAALSCLGALLSVQ  176 (182)
T ss_pred             CcHHHHHHHHHHHHHcCC
Confidence            999999999999987643

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=89.78  E-value=1.7  Score=42.89  Aligned_cols=135  Identities=17%  Similarity=0.114  Sum_probs=101.6

Q ss_pred             CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHH
Q 016714          172 GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQR  251 (384)
Q Consensus       172 ~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~  251 (384)
                      .++.++..|..+|..+..-+..+   +.  ..+|.++..+..+++|.++.++.-.+..+...-..    .+...-.+|.+
T Consensus       908 sd~~lq~aA~l~L~klMClS~~f---c~--ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~----~~de~t~yLyr  978 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEF---CS--EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT----TADEHTHYLYR  978 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHH---HH--HHHHHHHHHHhhCCCcceeccceeeccccceehhh----hhHHHHHHHHH
Confidence            68899999999999876544322   22  25788999998899999999988777766554211    12344567888


Q ss_pred             hhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 016714          252 LIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ  320 (384)
Q Consensus       252 lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  320 (384)
                      -|...+..++..++-++.+|.-...-.     -.|-++.++.+|.+++..+..-|=..+..++..+...
T Consensus       979 rL~De~~~V~rtclmti~fLilagq~K-----VKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~ 1042 (1128)
T COG5098         979 RLGDEDADVRRTCLMTIHFLILAGQLK-----VKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTM 1042 (1128)
T ss_pred             HhcchhhHHHHHHHHHHHHHHHcccee-----eccchhhhHhhccCCcchHHHHHHHHHHHHHhcccch
Confidence            888999999999999999987654322     2477899999999999999888888888888765543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=89.55  E-value=5.3  Score=40.60  Aligned_cols=155  Identities=15%  Similarity=0.199  Sum_probs=100.8

Q ss_pred             HHHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChH--HHHHHhcccchh
Q 016714          141 ALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALM--PLLAQLNEHSKL  217 (384)
Q Consensus       141 ~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~--~L~~~l~~~~~~  217 (384)
                      +|.+++..+++....+++.|++..+..++.. .+.++...++..++|++...+ .++.......+.  .+-..+....+.
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcchh
Confidence            6778888899999999999999999999986 678899999999999986443 112211111111  223334334444


Q ss_pred             HHHHHHHHHHhhhhcCCCCCC----hh--------------------hhhchHHH-HHHhhc-cCCHhHHHHHHHHHHHh
Q 016714          218 SMLRNATWTLSNFCRGKPPTP----FE--------------------QVKPALPI-LQRLIH-LNDEEVLTDACWALSYL  271 (384)
Q Consensus       218 ~~~~~a~~~L~~L~~~~~~~~----~~--------------------~~~~~~~~-L~~lL~-~~~~~i~~~a~~~l~~l  271 (384)
                      +....++..|+.+....+...    ..                    .....+.. +..++. +..+..+..|+|++.++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~  652 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV  652 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence            666777777777766532100    00                    00111111 333332 34566788899999999


Q ss_pred             ccCChHHHHHHHHcCChHHHHHhcC
Q 016714          272 SDGPNDKIQAVIEAGVCPRLVELLM  296 (384)
Q Consensus       272 ~~~~~~~~~~~~~~g~~~~L~~lL~  296 (384)
                      +...++....+.+.|+++.+...-.
T Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~  677 (699)
T KOG3665|consen  653 LEQNKEYCKLVRESNGFELIENIRV  677 (699)
T ss_pred             HHcChhhhhhhHhccchhhhhhcch
Confidence            9988877777788888888776653

>PRK14707 hypothetical protein; Provisional

Probab=89.29  E-value=45  Score=38.02  Aligned_cols=287  Identities=15%  Similarity=0.082  Sum_probs=146.5

Q ss_pred             CHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           75 SIPSMVQGVW-SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        75 ~l~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      .|..+++.+. ..+......++..|...+..+ ..-...+-..|+-..|=.+-+.++.+.+...+.++=+.++. .+..+
T Consensus       206 ~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~-~~~l~  283 (2710)
T PRK14707        206 GVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVD-DPGLR  283 (2710)
T ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh-hHHHH
Confidence            3444444443 234334445555666555543 23233333344444444444556645555555555566664 35555


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHH-hhhhc
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTL-SNFCR  232 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L-~~L~~  232 (384)
                      +.+-..++-..|-.+-+-++..+...|+..|..=-.+++..+..+ +.-.+...++.|.+-++..+-+.++.+| ..|+.
T Consensus       284 ~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~  362 (2710)
T PRK14707        284 KALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVA  362 (2710)
T ss_pred             HhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence            554443333333333344677777777777776555565554332 2224455666666666655555554444 44555


Q ss_pred             CCCCCChhhhhchHH-HHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714          233 GKPPTPFEQVKPALP-ILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG  311 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~-~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~  311 (384)
                      . +..........+. .|..+-.-++......+..+|..=...+.+....+-..|+-..|-.+-+=++..+...+...|.
T Consensus       363 d-~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA  441 (2710)
T PRK14707        363 D-PELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALA  441 (2710)
T ss_pred             C-HhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHH
Confidence            4 3333333333344 3434444566667667776665544455555555444455555555545577777777777776


Q ss_pred             HhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 016714          312 NIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV  366 (384)
Q Consensus       312 nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~  366 (384)
                      --+..+.+..+.+--.++...|--+-+-+ +..+..+|+-.|..=.+..++..+.
T Consensus       442 ~~la~d~~l~~~~~p~~va~~LnalSKWP-d~p~c~~aa~~La~~l~~~~~l~~a  495 (2710)
T PRK14707        442 GRLAHDTELCKALDPINVTQALDALSKWP-DTPICGQTASALAARLAHERRLRKA  495 (2710)
T ss_pred             HHHhccHHHHhhcChHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhcccHHHHhh
Confidence            66665555544332223333333333344 5556655555544443334443333

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=89.26  E-value=17  Score=33.02  Aligned_cols=153  Identities=13%  Similarity=0.060  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHHhcCCchhHHHHHhcCChH------------HHHHhhc------CCCHHHHHHHHHHHHhhhCCCCc
Q 016714          132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVP------------MFVQLLS------SGSDDVREQAVWALGNVAGDSPS  193 (384)
Q Consensus       132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~------------~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~  193 (384)
                      -++|..|+.|+.....++++.+..+++. .+|            .|+..|-      +.++--.--|+.+|..+..++++
T Consensus        52 f~lR~AA~~c~kay~~~N~~~q~~~l~~-~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~  130 (312)
T PF04869_consen   52 FDLRCAALYCFKAYFYNNEEGQTAFLST-LIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE  130 (312)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHT-TSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHH-HhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence            6899999999999999999999888763 111            2233222      11222222344444444444444


Q ss_pred             hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh----c-cCCHhHHHHHHHHH
Q 016714          194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI----H-LNDEEVLTDACWAL  268 (384)
Q Consensus       194 ~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL----~-~~~~~i~~~a~~~l  268 (384)
                      .|+.+..-                          ........+.    ....++.+..+|    . ..++.+...-+..|
T Consensus       131 ~Ke~al~V--------------------------~~~~~~~ge~----~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL  180 (312)
T PF04869_consen  131 AKEQALRV--------------------------TEGDESSGEE----PVTLIQTVSELLIASLRRNSDPRIQIGYLMLL  180 (312)
T ss_dssp             HHHHHTT----------------------------EE--STTS------EEHHHHHHHHTTT----T--HHHHHHHHHHH
T ss_pred             HHHHHHcc--------------------------cCCCCCCCCC----cccHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Confidence            43333221                          0011111111    112333333332    2 34566666666666


Q ss_pred             HHhccCChHHHHHHHHcC-ChHHHHHhcC---CCChhhHHHHHHHHHHhhc
Q 016714          269 SYLSDGPNDKIQAVIEAG-VCPRLVELLM---HPSATVLIPALRTVGNIVT  315 (384)
Q Consensus       269 ~~l~~~~~~~~~~~~~~g-~~~~L~~lL~---~~~~~v~~~a~~~l~nl~~  315 (384)
                      ..-...++..+..+++.+ .++.|+....   +.+.-++--++..||-+..
T Consensus       181 ~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye  231 (312)
T PF04869_consen  181 IVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE  231 (312)
T ss_dssp             HHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence            666677777777777764 7888888753   2355677777777777643

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=88.98  E-value=15  Score=32.06  Aligned_cols=118  Identities=20%  Similarity=0.288  Sum_probs=67.4

Q ss_pred             CHHHHHHhhcC-----------CCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHH--------HHH
Q 016714          118 VVPRFVEFLGR-----------HDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDD--------VRE  178 (384)
Q Consensus       118 ~i~~Lv~lL~~-----------~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~--------v~~  178 (384)
                      ++|.|+.+|..           ++ ......|+..|+.+           .+..+.|.++++++.++..        +-+
T Consensus        32 i~P~Ll~~Le~a~~~~~e~~~~~~-~~~~~~a~~LLaq~-----------re~~A~~~li~l~~~~~~~~~~l~GD~~tE   99 (249)
T PF06685_consen   32 ITPELLKILEDAIERANELLDDEE-YNLHFYALYLLAQF-----------REERALPPLIRLFSQDDDFLEDLFGDFITE   99 (249)
T ss_pred             hhHHHHHHHHHHHHhHHHhccCcc-hHHHHHHHHHHHHH-----------hhhhhHHHHHHHHcCCcchHHHHHcchhHh
Confidence            46666666653           22 23455555555544           2346899999999765531        122


Q ss_pred             HHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc-hhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCC
Q 016714          179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS-KLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLND  257 (384)
Q Consensus       179 ~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~  257 (384)
                      ....+|..+            -.|-++.|.+++.+.. +.-++.+++.+|..+....+......+.-+-..+...+..++
T Consensus       100 ~l~~ilasv------------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~  167 (249)
T PF06685_consen  100 DLPRILASV------------GDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNP  167 (249)
T ss_pred             HHHHHHHHH------------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCc
Confidence            222222222            2345677777775444 455777889999999988665555544433344444454444


Q ss_pred             Hh
Q 016714          258 EE  259 (384)
Q Consensus       258 ~~  259 (384)
                      ..
T Consensus       168 ~~  169 (249)
T PF06685_consen  168 SF  169 (249)
T ss_pred             hH
Confidence            44

The function of this family is unknown.

>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []

Probab=88.73  E-value=0.43  Score=28.19  Aligned_cols=38  Identities=34%  Similarity=0.400  Sum_probs=24.4

Q ss_pred             HHhccCCCCCCcHHHHHhHHHHHHHHHHHhhhHHHHhhh
Q 016714           11 VRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKR   49 (384)
Q Consensus        11 ~~~~~~k~~~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR   49 (384)
                      .|...||+..++.+.-+||+ ...+..|.+|-+.++.-|
T Consensus         2 PR~sqYK~~~~~~~Q~eRR~-~~Le~QK~kR~d~~~~aR   39 (40)
T PF11538_consen    2 PRLSQYKNKGSALDQEERRR-EFLERQKNKRLDYVNHAR   39 (40)
T ss_dssp             TTCSCTT-TTTSCSHHHHHH-HHHHHHHSHHSHHHHHHH
T ss_pred             ccHHHhhcccchHhHHHHHH-HHHHHHHHHhHHHHHhcc
Confidence            47788998444455544443 455888888888777655

Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=88.70  E-value=11  Score=30.71  Aligned_cols=114  Identities=18%  Similarity=0.231  Sum_probs=69.2

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcC--ChHHHHHhhcC-CCHHHHHHHHHHHHhhh---CC
Q 016714          117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG--AVPMFVQLLSS-GSDDVREQAVWALGNVA---GD  190 (384)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g--~i~~L~~lL~~-~~~~v~~~a~~~L~nl~---~~  190 (384)
                      ..+..+..+|.+++ +.-+..++..+...+..++  .+.+.+.+  -+..++.+|+. ++..+.+.++.+|..|.   .+
T Consensus        25 ~l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~  101 (165)
T PF08167_consen   25 KLVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG  101 (165)
T ss_pred             HHHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34666788888877 7888877777777766421  34444433  46888888887 55678888888888876   44


Q ss_pred             CCchhhHHHhc---CChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714          191 SPSCRDLVLSS---GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP  236 (384)
Q Consensus       191 ~~~~~~~i~~~---g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~  236 (384)
                      .+.....+...   +++..++.++..   ......++.+|..+-...|.
T Consensus       102 ~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  102 KPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             CCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCc
Confidence            45433333222   123333444311   34555666666666665443

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=88.63  E-value=3  Score=35.21  Aligned_cols=143  Identities=14%  Similarity=0.184  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----ChHHHHHHHHHHHHHhcCCc-hhHHHHHhcCChH
Q 016714           89 ALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD----MPQLQFEAAWALTNVASGTS-EHTRVVIEHGAVP  163 (384)
Q Consensus        89 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~~~~~a~~~L~nl~~~~~-~~~~~i~~~g~i~  163 (384)
                      .-...|+..+.-++|.  ++....++++.+--.+..+|...+    .+-++..++.+++.+..+++ +..+.+....++|
T Consensus       115 nRvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP  192 (315)
T COG5209         115 NRVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP  192 (315)
T ss_pred             hHHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence            3445566666655552  344444566654444556664332    25678888999999887544 4556666788999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhc-------CChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          164 MFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSS-------GALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       164 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~-------g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      .+++++..+++--+..|+.+++.+.+++...+..+...       ..+..++..+-+.....+...+..+...||..
T Consensus       193 LcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         193 LCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence            99999999999899999999999998876543322211       12233333333344556667777777667665

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=88.45  E-value=18  Score=32.40  Aligned_cols=201  Identities=10%  Similarity=0.100  Sum_probs=123.1

Q ss_pred             HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH---HHHhcCChHHHHHhhcC-C-CHHHHHHHHHHHHh
Q 016714          112 EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR---VVIEHGAVPMFVQLLSS-G-SDDVREQAVWALGN  186 (384)
Q Consensus       112 ~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~---~i~~~g~i~~L~~lL~~-~-~~~v~~~a~~~L~n  186 (384)
                      .+.++|+++.++.-+...+ -+.+..++.+..|+-......+.   ...... ...+-.++.. . .+++.-.|...|..
T Consensus        74 ef~~~~~l~~lI~~l~~l~-fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~-~e~~~~lv~~~~~~~~iaL~cg~mlrE  151 (342)
T KOG1566|consen   74 EFYNADVLSLLIQHLPKLE-FESRKDVLQIFNNLLRRQVGTRSPTVEYLETN-PEILDNLVKGYENTPEIALTCGNMLRE  151 (342)
T ss_pred             HHHhCCchHHHHHhhhccc-chhhhHHHHHHHHHHHhhcCCcchHHHHHHhC-HHHHHHHHhhhccchHHHHHHHHHHHH
Confidence            4567899999999998877 68888888888887653322222   222111 2222223332 1 23443333333333


Q ss_pred             hhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh----hchHH-HHHHhhccCCHhHH
Q 016714          187 VAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV----KPALP-ILQRLIHLNDEEVL  261 (384)
Q Consensus       187 l~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~----~~~~~-~L~~lL~~~~~~i~  261 (384)
                      .... +.....++...-.......+ +.+.-++...|..++..+.+.......+..    ...++ .--.++.+.+.-+.
T Consensus       152 cirh-e~LakiiL~s~~~~~FF~~v-q~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk  229 (342)
T KOG1566|consen  152 CIRH-EFLAKIILESTNFEKFFLYV-QLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK  229 (342)
T ss_pred             HHhh-HHHHHHHHcchhHHHHHHHH-hccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Confidence            2222 23445555655566666666 444456777777777777665422222222    22333 46677888888888


Q ss_pred             HHHHHHHHHhccCCh---HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714          262 TDACWALSYLSDGPN---DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG  316 (384)
Q Consensus       262 ~~a~~~l~~l~~~~~---~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (384)
                      ..+..+++.+....+   .....+.+..-+..++.+|.+++..++-.|....--.++.
T Consensus       230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn  287 (342)
T KOG1566|consen  230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN  287 (342)
T ss_pred             HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence            999999988775533   2233344446788999999999999999999998888765

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=88.35  E-value=1.8  Score=34.15  Aligned_cols=74  Identities=12%  Similarity=0.104  Sum_probs=58.9

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVAS  147 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~  147 (384)
                      +++..+.+.|++.++.+|..|+..|..++..........+...+++..|+.++....++.++..++..+...+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            46788888999999999999999998887654344455677889999999999754448899888888877664

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=88.12  E-value=1.7  Score=37.25  Aligned_cols=82  Identities=17%  Similarity=0.244  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcC-------CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH-HHHHhcC
Q 016714           89 ALQLEATTQFRKLLSIERSPPIDEVIKAG-------VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT-RVVIEHG  160 (384)
Q Consensus        89 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g-------~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~-~~i~~~g  160 (384)
                      +-|.-|+.+|.|+.-.  +.+++.++..+       ++..|+.+|....++..++-|.-.|.+++.++.... ....+.+
T Consensus       139 SPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  139 SPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            4677899999998654  45666665444       455667777665558899999999999999876655 4455678


Q ss_pred             ChHHHHHhhcCC
Q 016714          161 AVPMFVQLLSSG  172 (384)
Q Consensus       161 ~i~~L~~lL~~~  172 (384)
                      +|..|+.++.+.
T Consensus       217 ~i~~Li~FiE~a  228 (257)
T PF12031_consen  217 CISHLIAFIEDA  228 (257)
T ss_pred             hHHHHHHHHHHH
Confidence            999999999763

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=87.99  E-value=13  Score=30.68  Aligned_cols=118  Identities=18%  Similarity=0.184  Sum_probs=79.0

Q ss_pred             hhchHHHHHHhhccCCHhHHHHHHHHHHHhccC-ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 016714          242 VKPALPILQRLIHLNDEEVLTDACWALSYLSDG-PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ  320 (384)
Q Consensus       242 ~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~-~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  320 (384)
                      ....+|.+.+-|...+....--|...+..|... ..+.+-.++ ..++..|-..|.+.++.+...++.+|..++...+..
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v  114 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV  114 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence            367889999999888877777777777777766 555554433 356777788889999999999999999997766544


Q ss_pred             HHHHHHcCchHHHHHHhc----cC----------CchhHHHHHHHHHHHHhc-CCHH
Q 016714          321 TQFVIDNGVLPCLYQLLT----QN----------HKKSIKKEACWTISNITA-GNRA  362 (384)
Q Consensus       321 ~~~i~~~g~l~~L~~ll~----~~----------~~~~v~~~a~~~L~nl~~-~~~~  362 (384)
                      ...++-.  +..|+..++    ..          ....+.....-+|..+-. |.++
T Consensus       115 G~aLvPy--yrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d  169 (183)
T PF10274_consen  115 GEALVPY--YRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD  169 (183)
T ss_pred             hHHHHHH--HHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence            4444322  222333333    21          134566666667776665 4444

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.97  E-value=33  Score=34.87  Aligned_cols=278  Identities=14%  Similarity=0.108  Sum_probs=149.4

Q ss_pred             CHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           75 SIPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVI--KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        75 ~l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      ....+++.++.. |..+++.++++++-++..- +-.-+.+.  -.++...+.+++..-..-+-+...+..|+.+.....+
T Consensus       527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e  605 (978)
T KOG1993|consen  527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE  605 (978)
T ss_pred             HHHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            456677777766 6778888999988666432 22223332  2344555666665432245667777777766543222


Q ss_pred             hHHHHHhcCChHHHHHhh------cCCCHHHHHHHHHHHHhhhC----CCCchhhHHHhcCChHHHHHHhcccch---hH
Q 016714          152 HTRVVIEHGAVPMFVQLL------SSGSDDVREQAVWALGNVAG----DSPSCRDLVLSSGALMPLLAQLNEHSK---LS  218 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL------~~~~~~v~~~a~~~L~nl~~----~~~~~~~~i~~~g~i~~L~~~l~~~~~---~~  218 (384)
                      ....     ....++.++      ..+.+-++.+.+.+|.|+..    .++.+..      ++-+++++-.+.+.   .-
T Consensus       606 ~I~P-----~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~  674 (978)
T KOG1993|consen  606 HIAP-----YASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVY  674 (978)
T ss_pred             hhhH-----HHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceee
Confidence            2211     112222222      12556677788888888862    2222222      22334443322222   22


Q ss_pred             HHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHH-HHhccCChHHHHHHHHcCChHHHHHhcCC
Q 016714          219 MLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWAL-SYLSDGPNDKIQAVIEAGVCPRLVELLMH  297 (384)
Q Consensus       219 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l-~~l~~~~~~~~~~~~~~g~~~~L~~lL~~  297 (384)
                      +.+.+...-.....+.+ .-.....+++|.+...+....+.+ .-++.++ +|+.-.+.... .-...|+++.+..+|.+
T Consensus       675 L~EDgmeLW~~~L~n~~-~l~p~ll~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~l~d  751 (978)
T KOG1993|consen  675 LLEDGMELWLTTLMNSQ-KLTPELLLLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFL-NDYAFGIFKKLNDLLDD  751 (978)
T ss_pred             hhhhHHHHHHHHHhccc-ccCHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHH
Confidence            33333222122222212 222334567788887775544333 2333333 33333333222 22345888999999987


Q ss_pred             CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 016714          298 PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN-HKKSIKKEACWTISNITAGNRAQIQVHD  368 (384)
Q Consensus       298 ~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~i~~l~  368 (384)
                      -..+-....+.++.++...++ ........++++.+..-+..+ ..|.+..+-..+++.+.-.+++.+-.++
T Consensus       752 vr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvl  822 (978)
T KOG1993|consen  752 VRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVL  822 (978)
T ss_pred             hhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHH
Confidence            666667778888888877555 344455668888876655433 2566666666677777666666655554

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=87.91  E-value=11  Score=30.52  Aligned_cols=115  Identities=15%  Similarity=0.151  Sum_probs=78.3

Q ss_pred             hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc--CChHHHHHhcCCCC-hhhHHHHHHHHHHhh-
Q 016714          239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA--GVCPRLVELLMHPS-ATVLIPALRTVGNIV-  314 (384)
Q Consensus       239 ~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~--g~~~~L~~lL~~~~-~~v~~~a~~~l~nl~-  314 (384)
                      ...+...+..+..+|++.+++-+..++..+.-.++.++.  +.+.++  .++..++..|+.++ +.+...++.++..|. 
T Consensus        20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~   97 (165)
T PF08167_consen   20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD   97 (165)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            344566777788999999999888888888888876532  233333  46888999997654 567788888888885 


Q ss_pred             --cCChHHHHHHHHc---CchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          315 --TGDDAQTQFVIDN---GVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       315 --~~~~~~~~~i~~~---g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                        .+.++....+...   ++++.++.+++.   ......+.-+|..+..
T Consensus        98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen   98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLP  143 (165)
T ss_pred             HhcCCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHH
Confidence              4455655555544   344445555542   3566777777777765

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.85  E-value=2.3  Score=37.74  Aligned_cols=100  Identities=20%  Similarity=0.230  Sum_probs=65.5

Q ss_pred             ChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHH-HHhhc---cCCHhHHHHHHHHHHHhccCChHH
Q 016714          203 ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPIL-QRLIH---LNDEEVLTDACWALSYLSDGPNDK  278 (384)
Q Consensus       203 ~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L-~~lL~---~~~~~i~~~a~~~l~~l~~~~~~~  278 (384)
                      .+..+++-+ .+....+-+.++.++..+..........    .+..+ ..++.   .++..++.+|-.+|..+..+....
T Consensus       130 vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~  204 (334)
T KOG2933|consen  130 VIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ  204 (334)
T ss_pred             HHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH
Confidence            344455555 5556678888888888887764332222    23322 33333   234668999999999887764432


Q ss_pred             HHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714          279 IQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV  314 (384)
Q Consensus       279 ~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (384)
                             .+++.|...+.+.++.++..++.++.+..
T Consensus       205 -------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  205 -------KLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             -------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence                   24677888888888888888887777764

>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []

Probab=87.71  E-value=13  Score=32.96  Aligned_cols=190  Identities=16%  Similarity=0.223  Sum_probs=97.4

Q ss_pred             hhhcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc
Q 016714           71 KKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS  150 (384)
Q Consensus        71 ~~~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~  150 (384)
                      ..++.+..|.+.|..+|+... .+.+++...          .+++..++|.|+..=.  + +.+-..++..|.+++.- .
T Consensus        10 dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~P-~   74 (266)
T PF04821_consen   10 DCLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTWP-I   74 (266)
T ss_pred             hHHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCCC-H
Confidence            345677888888887776554 444444432          1444455665555422  3 78999999999999872 1


Q ss_pred             hhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc----------ccchhHHH
Q 016714          151 EHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN----------EHSKLSML  220 (384)
Q Consensus       151 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~----------~~~~~~~~  220 (384)
                      +..   .  +-.|        .+..-+.........+.    .++..+...+++..++..+.          ...+..+.
T Consensus        75 ~~~---~--~~~~--------~~~~~~~~~~~l~~~l~----~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii  137 (266)
T PF04821_consen   75 ELL---V--ESQP--------KDKNQRRNIPELLKYLQ----SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLII  137 (266)
T ss_pred             HHh---c--cCCC--------CChHHHHHHHHHHHHHH----HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHH
Confidence            110   0  1000        01111111111111111    13344444444444444441          12245677


Q ss_pred             HHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC-C
Q 016714          221 RNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP-S  299 (384)
Q Consensus       221 ~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~-~  299 (384)
                      +.++..+.|+..-++.+.......           .+...+..              .+..+.+.|+...|+.+..+. .
T Consensus       138 ~lvL~LiRNlL~Ip~~~~~~~~~~-----------~~~~~~d~--------------li~~l~~~~v~~lLL~l~s~~~~  192 (266)
T PF04821_consen  138 ELVLTLIRNLLAIPDPPSASKRSD-----------EDSSLHDQ--------------LIWALFESGVLDLLLTLASSPQE  192 (266)
T ss_pred             HHHHHHHHHHhcCCCCcccccccc-----------hhHHHHHH--------------HHHHHHHcCHHHHHHHHHhCccc
Confidence            888888888888742221111101           11222222              333455678888888888765 3


Q ss_pred             hhhHHHHHHHHHHhhcCC
Q 016714          300 ATVLIPALRTVGNIVTGD  317 (384)
Q Consensus       300 ~~v~~~a~~~l~nl~~~~  317 (384)
                      .......+.++..+..+.
T Consensus       193 ~~f~~~lLEIi~ll~k~~  210 (266)
T PF04821_consen  193 SDFNLLLLEIIYLLFKGQ  210 (266)
T ss_pred             cchhhHHHHHHHHHHcCC
Confidence            334446666777666553

This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=87.56  E-value=13  Score=40.25  Aligned_cols=143  Identities=13%  Similarity=0.130  Sum_probs=91.8

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh
Q 016714          160 GAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF  239 (384)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~  239 (384)
                      +.+..++..|..+...+|..|+.||+++..-+|...   .....-..+-..+ .++...++.+|+-.++...-..+..  
T Consensus       816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~-~DssasVREAaldLvGrfvl~~~e~--  889 (1692)
T KOG1020|consen  816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRL-NDSSASVREAALDLVGRFVLSIPEL--  889 (1692)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhh-ccchhHHHHHHHHHHhhhhhccHHH--
Confidence            467778888888899999999999999997666421   1111222333444 4566788999998888766654432  


Q ss_pred             hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714          240 EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI  313 (384)
Q Consensus       240 ~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (384)
                        .......+..-+..+...|+..++.++..+|...++... +.  .++..++.-..++...|+.-++.++-++
T Consensus       890 --~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i~--~~cakmlrRv~DEEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  890 --IFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-IV--DMCAKMLRRVNDEEGNIKKLVRETFLKL  958 (1692)
T ss_pred             --HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-HH--HHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence              233444455555666778999999999999887654321 11  1233333333444555777777777665

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=87.44  E-value=7.3  Score=28.47  Aligned_cols=68  Identities=16%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             HcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHH
Q 016714          284 EAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI  353 (384)
Q Consensus       284 ~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L  353 (384)
                      ..+++..|+.+.+.+.......++..+..++. .+.....+.+-|+...|.++-... ++..+...--++
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~-~~~~~~~id~il   95 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNV-EPNLQAEIDEIL   95 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence            45778999999999988899999999999887 455556688889999888887666 676666554444

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=87.26  E-value=2.4  Score=33.60  Aligned_cols=74  Identities=14%  Similarity=0.150  Sum_probs=60.0

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVAS  147 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~  147 (384)
                      .++..+.+.|++.++.+++.|+..|..+...........+....++..|+.++....++.++..++..+...+.
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            46788888999999999999999999887765344455677889999999999873338999999988887765

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=87.25  E-value=19  Score=31.37  Aligned_cols=112  Identities=22%  Similarity=0.215  Sum_probs=64.1

Q ss_pred             hchHHHHHHhhccCCHh--------HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC--ChhhHHHHHHHHHH
Q 016714          243 KPALPILQRLIHLNDEE--------VLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP--SATVLIPALRTVGN  312 (384)
Q Consensus       243 ~~~~~~L~~lL~~~~~~--------i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~--~~~v~~~a~~~l~n  312 (384)
                      ..++|.+++++..++..        +-...-.++..++            .|=++.|..++.++  +..++..|+.++..
T Consensus        72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~  139 (249)
T PF06685_consen   72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAF  139 (249)
T ss_pred             hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            46788999998765531        2222223333333            34556666666655  46789999999999


Q ss_pred             hhcCChHHHHHHHHcCchHHHHHH-hccCCchhHHHHHHHHHHHHhc----CCHHHHHHHHhCCc
Q 016714          313 IVTGDDAQTQFVIDNGVLPCLYQL-LTQNHKKSIKKEACWTISNITA----GNRAQIQVHDSFHL  372 (384)
Q Consensus       313 l~~~~~~~~~~i~~~g~l~~L~~l-l~~~~~~~v~~~a~~~L~nl~~----~~~~~i~~l~~~~~  372 (384)
                      ++...+..+..+++.  +..++.- +... ++.+   --+.+++++.    .--..|+.+.+.|+
T Consensus       140 l~~~~~~~Re~vi~~--f~~ll~~~l~~~-~~~~---~~~Lv~~~~dL~~~EL~~~I~~~f~~~l  198 (249)
T PF06685_consen  140 LVHEGPISREEVIQY--FRELLNYFLERN-PSFL---WGSLVADICDLYPEELLPEIRKAFEDGL  198 (249)
T ss_pred             HHHcCCCCHHHHHHH--HHHHHHHHhccC-chHH---HHHHHHHHHhcCHHHhHHHHHHHHHcCC
Confidence            998877666665542  2222222 3333 2221   1223344443    34556677777777

The function of this family is unknown.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=86.58  E-value=29  Score=34.50  Aligned_cols=74  Identities=16%  Similarity=0.162  Sum_probs=57.9

Q ss_pred             hHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHH
Q 016714          288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG-NRAQIQV  366 (384)
Q Consensus       288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~i~~  366 (384)
                      +..+-.+|..+++.++...-.++|-++..+|..       ++++.|.++.... +.++.-.|.++++-+.+| +...+..
T Consensus       642 lR~f~h~l~yge~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~-D~eva~naIfamGLiGAGTnNARla~  713 (878)
T KOG2005|consen  642 LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDG-DLEVAMNAIFAMGLIGAGTNNARLAQ  713 (878)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCc-chHHHHHHHHHhccccCCcchHHHHH
Confidence            455666677888999999999999988877755       4678888988888 899999999999999986 4444444


Q ss_pred             HHh
Q 016714          367 HDS  369 (384)
Q Consensus       367 l~~  369 (384)
                      ++.
T Consensus       714 mLr  716 (878)
T KOG2005|consen  714 MLR  716 (878)
T ss_pred             HHH
Confidence            443

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=86.53  E-value=26  Score=32.13  Aligned_cols=155  Identities=17%  Similarity=0.123  Sum_probs=102.2

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhc-CCchhHHHHHhcC--ChHHHHHhhcC-----CC--------HHHHHHHHH
Q 016714          119 VPRFVEFLGRHDMPQLQFEAAWALTNVAS-GTSEHTRVVIEHG--AVPMFVQLLSS-----GS--------DDVREQAVW  182 (384)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~-~~~~~~~~i~~~g--~i~~L~~lL~~-----~~--------~~v~~~a~~  182 (384)
                      ++.+...|.+.. +.+...+++.|..++. +.......+...-  -.+.|.+++..     +.        +.+|...+.
T Consensus        58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            778888898888 8889999999999998 6656666666532  34566666642     11        288888876


Q ss_pred             HHHhhh-CCCCchhhHHH-hcCChHHHHHHhcccchhHHHHHHHHHHhh-hhcCCCCCC--hhh--hhchHHHHHHhhcc
Q 016714          183 ALGNVA-GDSPSCRDLVL-SSGALMPLLAQLNEHSKLSMLRNATWTLSN-FCRGKPPTP--FEQ--VKPALPILQRLIHL  255 (384)
Q Consensus       183 ~L~nl~-~~~~~~~~~i~-~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~-L~~~~~~~~--~~~--~~~~~~~L~~lL~~  255 (384)
                      .+..+. ..++..+..++ +.+.+..+++-| ..++.++....+.+|.. +.....-+.  ...  -...+..|..+...
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l-~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~  215 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGL-RKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR  215 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcc-cCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence            666554 44454555544 455677788888 44667777777777763 444331111  111  16677888887777


Q ss_pred             CCH----hHHHHHHHHHHHhccCC
Q 016714          256 NDE----EVLTDACWALSYLSDGP  275 (384)
Q Consensus       256 ~~~----~i~~~a~~~l~~l~~~~  275 (384)
                      +++    .+...+-..|..+|..+
T Consensus       216 ~~~~~~~~~~~~vh~fL~~lcT~p  239 (330)
T PF11707_consen  216 DGEDEKSSVADLVHEFLLALCTDP  239 (330)
T ss_pred             cCCcccchHHHHHHHHHHHHhcCC
Confidence            666    67777777777777543

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=86.52  E-value=22  Score=31.33  Aligned_cols=169  Identities=15%  Similarity=0.112  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHhhhCC-------CCchhhHHHhcCChHHHHHHhcccc---hhHHHHHHHHHHhhhhcCCCCCChhhhh
Q 016714          174 DDVREQAVWALGNVAGD-------SPSCRDLVLSSGALMPLLAQLNEHS---KLSMLRNATWTLSNFCRGKPPTPFEQVK  243 (384)
Q Consensus       174 ~~v~~~a~~~L~nl~~~-------~~~~~~~i~~~g~i~~L~~~l~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~  243 (384)
                      ....+.++..|..++.-       +.+.|-.+.-.+.+|.++..+....   .......++..|+.+|...+..   ...
T Consensus        76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~---~La  152 (262)
T PF14225_consen   76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLP---NLA  152 (262)
T ss_pred             CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCc---cHH
Confidence            34456667777766532       1212333333345666677663333   1245567778888888653322   112


Q ss_pred             chHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHH
Q 016714          244 PALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQF  323 (384)
Q Consensus       244 ~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~  323 (384)
                      .++....+--..+..+....++..|..-.. +.      .+...+..|+.+|.++-+.++..++.+|..+....+-... 
T Consensus       153 ~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-  224 (262)
T PF14225_consen  153 RILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD------HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-  224 (262)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch------hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-
Confidence            233322222223345566666666654221 11      1224467899999988889999999999999865443322 


Q ss_pred             HHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          324 VIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       324 i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                       ...+++..+.++++.+    ...+|.-+|-++..
T Consensus       225 -~~~dlispllrlL~t~----~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  225 -HGADLISPLLRLLQTD----LWMEALEVLDEIVT  254 (262)
T ss_pred             -cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence             4456788899999776    56777777777765

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=86.48  E-value=65  Score=36.69  Aligned_cols=102  Identities=11%  Similarity=0.120  Sum_probs=63.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC--CCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcC--
Q 016714           85 SEDPALQLEATTQFRKLLSIE--RSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG--  160 (384)
Q Consensus        85 s~~~~~~~~a~~~l~~l~s~~--~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g--  160 (384)
                      +.+..+...|+..|+++...-  ..+-...-.+..++..|..++.+..+.+++...+.|+.++.....    .-+..|  
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSGWk 1223 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSGWK 1223 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcCcH
Confidence            345667788888887765321  111111122445677888877665558999999999998865322    223334  


Q ss_pred             -ChHHHHHhhcCCCHHHHHHHHHHHHhhhCC
Q 016714          161 -AVPMFVQLLSSGSDDVREQAVWALGNVAGD  190 (384)
Q Consensus       161 -~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~  190 (384)
                       ++..|-....+.++.+...|..++..|+.+
T Consensus      1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d 1254 (1780)
T PLN03076       1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE 1254 (1780)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHh
Confidence             223333333457788999999988888754

>PRK14707 hypothetical protein; Provisional

Probab=86.35  E-value=68  Score=36.76  Aligned_cols=276  Identities=17%  Similarity=0.112  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc
Q 016714           91 QLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS  170 (384)
Q Consensus        91 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~  170 (384)
                      ...++..|...++.+ +.....+-..|+...|=.+-+.+++++++..+...-.-++.+ +..+..+-. ..+-..+..|+
T Consensus       181 c~~aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~~~-q~va~~lN~ls  257 (2710)
T PRK14707        181 CQAVAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRNELKP-QELGNALNALS  257 (2710)
T ss_pred             HHHHHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhCCh-HHHHHHHHHHh
Confidence            334555555555543 333333433343333434445577677777665555556653 444443333 34555555554


Q ss_pred             C-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHh-hhhcCCCCCChhhhhchHHH
Q 016714          171 S-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLS-NFCRGKPPTPFEQVKPALPI  248 (384)
Q Consensus       171 ~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~-~L~~~~~~~~~~~~~~~~~~  248 (384)
                      . ++.....+++.+|..=..+.+..+..+-.. .+--.++.|.+.++..+-..++..|. .|.. ++..........+..
T Consensus       258 Kwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~~~~~~~~~~  335 (2710)
T PRK14707        258 KWADTPVCAAAASALAERLVDDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCKALNARGLST  335 (2710)
T ss_pred             cCCCchHHHHHHHHHHHHHhhhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhhccchHHHHH
Confidence            4 555555666555554333444444433222 33445566656677766665555544 3443 343333333333333


Q ss_pred             HHHhh-ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 016714          249 LQRLI-HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN  327 (384)
Q Consensus       249 L~~lL-~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~  327 (384)
                      .+..| .-+|..+...+..+|.-=...+++..+.+--.|+-..|-.+-+=++..+...|...|..=..++++....+--.
T Consensus       336 ~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q  415 (2710)
T PRK14707        336 ALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQ  415 (2710)
T ss_pred             HHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchh
Confidence            33333 44565666666665544333344444443333444444444455666667777777766666666665544444


Q ss_pred             CchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          328 GVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       328 g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      |+-..|--+-+-+ +..+...++-.|.--.+...+.++.+--.++
T Consensus       416 ~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~v  459 (2710)
T PRK14707        416 GVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINV  459 (2710)
T ss_pred             hHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHH
Confidence            4444444444445 7778887777777666666666655544444

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=86.30  E-value=23  Score=31.26  Aligned_cols=214  Identities=18%  Similarity=0.129  Sum_probs=120.2

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcCCC--CCcHHH-HH------Hc-CCHHH----HHHhhcCCCChHHHHHHHHHHHHH
Q 016714           80 VQGVWSEDPALQLEATTQFRKLLSIER--SPPIDE-VI------KA-GVVPR----FVEFLGRHDMPQLQFEAAWALTNV  145 (384)
Q Consensus        80 v~~l~s~~~~~~~~a~~~l~~l~s~~~--~~~~~~-~~------~~-g~i~~----Lv~lL~~~~~~~~~~~a~~~L~nl  145 (384)
                      +.+|.+..+.+-..|+..+.++++.-+  ++.... +.      .. |..+-    +++-|.++.   ....+...|..+
T Consensus        13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L   89 (262)
T PF14225_consen   13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL   89 (262)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence            445566666666666666666655421  111111 11      11 33333    344444433   344555555555


Q ss_pred             hcC-------CchhHHHHHhcCChHHHHHhhcCCC----HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc-
Q 016714          146 ASG-------TSEHTRVVIEHGAVPMFVQLLSSGS----DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE-  213 (384)
Q Consensus       146 ~~~-------~~~~~~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~-  213 (384)
                      +.-       .++.+-.+.=.+.+|.++.-+.+++    ......++..|+.+|....        ...+..++..+.. 
T Consensus        90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~  161 (262)
T PF14225_consen   90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG  161 (262)
T ss_pred             hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence            442       2222333333456788888777766    2445567788888884322        1123333333322 


Q ss_pred             --cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHH
Q 016714          214 --HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRL  291 (384)
Q Consensus       214 --~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L  291 (384)
                        .+..+....++..|+.-..  |.    .....+-.+..+|.+.-+.++..++.+|..+....+-...  ....++..+
T Consensus       162 ~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl  233 (262)
T PF14225_consen  162 RFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL  233 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence              2244566666655543322  21    2245677788999988899999999999998876543322  445678888


Q ss_pred             HHhcCCCChhhHHHHHHHHHHhhc
Q 016714          292 VELLMHPSATVLIPALRTVGNIVT  315 (384)
Q Consensus       292 ~~lL~~~~~~v~~~a~~~l~nl~~  315 (384)
                      .++|.++   .-..|+.++-++..
T Consensus       234 lrlL~t~---~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  234 LRLLQTD---LWMEALEVLDEIVT  254 (262)
T ss_pred             HHHhCCc---cHHHHHHHHHHHHh
Confidence            8888764   34567777776654

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=86.19  E-value=6.6  Score=45.07  Aligned_cols=263  Identities=14%  Similarity=0.164  Sum_probs=134.7

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCC--CcHHHHH--HcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHhcCCchhHHHHHh
Q 016714           84 WSEDPALQLEATTQFRKLLSIERS--PPIDEVI--KAGVVPRFVEFLG-RHDMPQLQFEAAWALTNVASGTSEHTRVVIE  158 (384)
Q Consensus        84 ~s~~~~~~~~a~~~l~~l~s~~~~--~~~~~~~--~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~  158 (384)
                      ...+++.+..+...+..++.....  ......+  ...++..+..+-. .++ +.++......+.      ...-....+
T Consensus       491 ~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~laQ  563 (2341)
T KOG0891|consen  491 EADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQLAQ  563 (2341)
T ss_pred             hcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhhcC
Confidence            356677777776666655543211  0000001  1122333332222 233 565554444443      222222334


Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc---ccchhHHHHHHHHHHhhhhcCCC
Q 016714          159 HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN---EHSKLSMLRNATWTLSNFCRGKP  235 (384)
Q Consensus       159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~L~~~~~  235 (384)
                      .+.+..+...+..+.-.+++.+...+|+++..+|.+.-..+.    ..++..+.   .+.-.-+......-+..+....+
T Consensus       564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr----~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~  639 (2341)
T KOG0891|consen  564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLR----KTLLELLTELEFSGMARTKEESAKLLCELIISSP  639 (2341)
T ss_pred             chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHH----HHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHH
Confidence            455666777777788899999999999999877632111111    11122221   11100000111111111111111


Q ss_pred             CCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC-CCChhhHHHHHHHHHHhh
Q 016714          236 PTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM-HPSATVLIPALRTVGNIV  314 (384)
Q Consensus       236 ~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~-~~~~~v~~~a~~~l~nl~  314 (384)
                      .-....+.+.+..++..+...+..+...+..+++.||...........+ ..++.+.+-+. ..+..-+..++++++++.
T Consensus       640 ~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~  718 (2341)
T KOG0891|consen  640 VLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE  718 (2341)
T ss_pred             HHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence            1112223445556666677777788888888999988765533333333 44455555543 345566788999999998


Q ss_pred             cCChHHHHHHH-HcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          315 TGDDAQTQFVI-DNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       315 ~~~~~~~~~i~-~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ....-...... ..-++..+...+.......++.++...++++.+
T Consensus       719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~  763 (2341)
T KOG0891|consen  719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGA  763 (2341)
T ss_pred             cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc
Confidence            65432222111 124566666666666567788888888887766

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=86.12  E-value=3  Score=32.55  Aligned_cols=74  Identities=14%  Similarity=0.094  Sum_probs=57.0

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC-hHHHHHHHHHHHHHhc
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDM-PQLQFEAAWALTNVAS  147 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~-~~~~~~a~~~L~nl~~  147 (384)
                      .++..+.+.|++.++.+++.|+..+..++.....+....+...+++..|+.+++.... +.++..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            4678888889999999999999999988776534445667788899999999987553 3388888777776654

Unpublished observations. Domain of unknown function.

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.05  E-value=51  Score=37.09  Aligned_cols=229  Identities=14%  Similarity=0.098  Sum_probs=115.0

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714          119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDL  197 (384)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (384)
                      +..++..|..++ |..+..++.+++.++..  .....++. +..+.+++-+.+ .++-.|..-..++|.+-.+....-..
T Consensus       878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~--v~~~~f~a-~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  878 LTLIVNSLINPN-PKLRCAAAEALARLAQV--VGSAPFVA-SLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHhhhhccCC-hHHHHHHHHHHHHHHHh--ccccchHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            344455555556 77777777777777663  11112221 234555555554 45555555556666664332211111


Q ss_pred             HHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc----
Q 016714          198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSD----  273 (384)
Q Consensus       198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~----  273 (384)
                      -.....+..++.+-.++.++.++..++.++..+...........+...+..+..+|-+..+ ...+.-.+.+.+..    
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCc-chhhhhhhhccccccchh
Confidence            1112245566666655566789998898888887765333344445556655665533221 12222222222111    


Q ss_pred             -------------CCh--HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhc
Q 016714          274 -------------GPN--DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLT  338 (384)
Q Consensus       274 -------------~~~--~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~  338 (384)
                                   .+.  +.+.. ...-.+-...-++.++++.++..++.++-++-...+.+...   .-+++.+..++.
T Consensus      1033 ~~alittlgpeL~~N~~~d~t~~-~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTST-LRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLS 1108 (2067)
T ss_pred             HHHHHHhcccccCCCCcccchhH-HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhc
Confidence                         111  01111 11122333334456778888999999999986555533221   124455666665


Q ss_pred             cCCchhHHHHHHHHHHHHh
Q 016714          339 QNHKKSIKKEACWTISNIT  357 (384)
Q Consensus       339 ~~~~~~v~~~a~~~L~nl~  357 (384)
                      ++ ---.|+...-++..++
T Consensus      1109 s~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1109 SS-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred             ch-hhhhhhhHHhhhhHHh
Confidence            55 3334444444444444

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=85.72  E-value=3  Score=42.72  Aligned_cols=130  Identities=13%  Similarity=0.134  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh
Q 016714          174 DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI  253 (384)
Q Consensus       174 ~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL  253 (384)
                      +.++.++.-+|+++|--...    + ....+|.|++-|..+.+..++.+..-++..+|...    -..+...+|.+...|
T Consensus       945 ~~vra~~vvTlakmcLah~~----L-aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDR----L-AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhH----H-HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence            67888999999999843322    1 22368899999988888888888888888888752    134477899999999


Q ss_pred             ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714          254 HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG  316 (384)
Q Consensus       254 ~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (384)
                      ..+++-++..++-.|++|...+--.    .+-.++-+++-.|-+.+++++..|=.+++.+...
T Consensus      1016 ~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred             cCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999997653211    1111223333344456788999999999998754

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=85.70  E-value=4.5  Score=40.32  Aligned_cols=110  Identities=17%  Similarity=0.125  Sum_probs=60.5

Q ss_pred             chHHHHHHhhccC----CHhHHHHHHHHHHHhcc----CChHHHHHHHHcCChHHHHHhc----CCCChhhHHHHHHHHH
Q 016714          244 PALPILQRLIHLN----DEEVLTDACWALSYLSD----GPNDKIQAVIEAGVCPRLVELL----MHPSATVLIPALRTVG  311 (384)
Q Consensus       244 ~~~~~L~~lL~~~----~~~i~~~a~~~l~~l~~----~~~~~~~~~~~~g~~~~L~~lL----~~~~~~v~~~a~~~l~  311 (384)
                      ..+..+..++.++    .+.+...++-+++.+..    ..+..... +-..+++.+...|    ...+...+..++++||
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  471 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALG  471 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence            3445555665543    34566666666666553    12110011 1123455555544    2345556778999999


Q ss_pred             HhhcCChHHHHHHHHcCchHHHHHHhc-cC-CchhHHHHHHHHHHHHhcCCHHHHH
Q 016714          312 NIVTGDDAQTQFVIDNGVLPCLYQLLT-QN-HKKSIKKEACWTISNITAGNRAQIQ  365 (384)
Q Consensus       312 nl~~~~~~~~~~i~~~g~l~~L~~ll~-~~-~~~~v~~~a~~~L~nl~~~~~~~i~  365 (384)
                      |+....           .++.+..++. .. .+..+|..|+|+|..++...+..++
T Consensus       472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~  516 (574)
T smart00638      472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ  516 (574)
T ss_pred             ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH
Confidence            986522           2333444444 11 1567999999999999864444444

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=85.48  E-value=12  Score=36.39  Aligned_cols=104  Identities=14%  Similarity=0.073  Sum_probs=76.7

Q ss_pred             cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchh
Q 016714          116 AGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR  195 (384)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  195 (384)
                      .|.+..++..+.+++ ..++..++.+|.-+... ....+..+-.|.+..|..-+-+..+.++.+|+.+|+.+-.....- 
T Consensus        90 ~~~~~h~lRg~eskd-k~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-  166 (885)
T COG5218          90 AGTFYHLLRGTESKD-KKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-  166 (885)
T ss_pred             HHHHHHHHhcccCcc-hhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-
Confidence            467888888888888 89999999999988763 444445666678888888777888999999999999986433211 


Q ss_pred             hHHHhcCChHHHHHHhcccchhHHHHHHHHH
Q 016714          196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWT  226 (384)
Q Consensus       196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~  226 (384)
                          +......|...++.+++.++++.++.-
T Consensus       167 ----en~~~n~l~~~vqnDPS~EVRr~alln  193 (885)
T COG5218         167 ----ENRIVNLLKDIVQNDPSDEVRRLALLN  193 (885)
T ss_pred             ----HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence                112345677777777888888877643

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=84.49  E-value=41  Score=32.56  Aligned_cols=91  Identities=18%  Similarity=0.170  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC------CChhhHHHHHHHHHHhhcCChHHHHHHHHc---Cc
Q 016714          259 EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH------PSATVLIPALRTVGNIVTGDDAQTQFVIDN---GV  329 (384)
Q Consensus       259 ~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---g~  329 (384)
                      +....+-.++.||+......       ..+..|..+|..      .+..+..-|+.+++.+..+..+....-+..   -+
T Consensus       230 ~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v  302 (464)
T PF11864_consen  230 SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV  302 (464)
T ss_pred             ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence            44555556777776543221       235667777732      234566778888888877663222211221   26


Q ss_pred             hHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714          330 LPCLYQLLTQNHKKSIKKEACWTISNIT  357 (384)
Q Consensus       330 l~~L~~ll~~~~~~~v~~~a~~~L~nl~  357 (384)
                      ++.|...++.. ++.+--+..-.+.++.
T Consensus       303 l~sl~~al~~~-~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  303 LPSLLNALKSN-SPRVDYEILLLINRLL  329 (464)
T ss_pred             HHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence            77777777766 5666666666666666

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=84.32  E-value=36  Score=31.81  Aligned_cols=156  Identities=11%  Similarity=0.076  Sum_probs=88.6

Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhc---CCC------ChHHHHHHHHHHHHHh
Q 016714           77 PSMVQGVWSED-PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLG---RHD------MPQLQFEAAWALTNVA  146 (384)
Q Consensus        77 ~~lv~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~---~~~------~~~~~~~a~~~L~nl~  146 (384)
                      ..+.+.|..+. +..+...+..++ ++|.+ ....+-+.....+..|+.+-.   .++      +..+..++..||.|+.
T Consensus        48 e~i~~Vle~~~p~t~~v~~Letvr-ILSRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv  125 (532)
T KOG4464|consen   48 ERIFEVLENGEPLTHRVVCLETVR-ILSRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV  125 (532)
T ss_pred             HHHHHHHhcCCCchhhhhHHHHHH-HHhcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence            44555555555 445555666666 45654 233222322223444444432   111      1478999999999999


Q ss_pred             cCCchhHHHHHhcCChHHHHHhhcCCC-----HHHHHHHHHHHHhhhCCCCchh-hHHHhcCChHHHHHHhccc------
Q 016714          147 SGTSEHTRVVIEHGAVPMFVQLLSSGS-----DDVREQAVWALGNVAGDSPSCR-DLVLSSGALMPLLAQLNEH------  214 (384)
Q Consensus       147 ~~~~~~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~-~~i~~~g~i~~L~~~l~~~------  214 (384)
                      ..++..+..+.+......+++.+...-     -.+...=+..|.-+..-.+..| ..+.+.++++.+.+.+...      
T Consensus       126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse  205 (532)
T KOG4464|consen  126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSE  205 (532)
T ss_pred             hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCC
Confidence            999999999999888888777664311     1122222223333332222334 3445677888887777421      


Q ss_pred             --------chhHHHHHHHHHHhhhhcCC
Q 016714          215 --------SKLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       215 --------~~~~~~~~a~~~L~~L~~~~  234 (384)
                              .+.+....++.++.|+....
T Consensus       206 ~n~~~l~pqe~n~a~EaLK~~FNvt~~~  233 (532)
T KOG4464|consen  206 INVPPLNPQETNRACEALKVFFNVTCDS  233 (532)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence                    12234556777788887765

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=84.15  E-value=29  Score=32.41  Aligned_cols=153  Identities=16%  Similarity=0.086  Sum_probs=96.4

Q ss_pred             HHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh----------ccCCHhHHHHHHHHHHHhccCC
Q 016714          206 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI----------HLNDEEVLTDACWALSYLSDGP  275 (384)
Q Consensus       206 ~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL----------~~~~~~i~~~a~~~l~~l~~~~  275 (384)
                      .++..|.+.........++.++.-|++.+....-....+.+..|+.+-          ...|..+...++.||.|+..++
T Consensus        49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S  128 (532)
T KOG4464|consen   49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS  128 (532)
T ss_pred             HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence            455556444445555666777777777653322222234444444332          1235688999999999999998


Q ss_pred             hHHHHHHHHcCChHHHHHhcCC----C-ChhhHHHHHHHHHHhhcCC-hHHHHHHHHcCchHHHHHHhccCC--------
Q 016714          276 NDKIQAVIEAGVCPRLVELLMH----P-SATVLIPALRTVGNIVTGD-DAQTQFVIDNGVLPCLYQLLTQNH--------  341 (384)
Q Consensus       276 ~~~~~~~~~~g~~~~L~~lL~~----~-~~~v~~~a~~~l~nl~~~~-~~~~~~i~~~g~l~~L~~ll~~~~--------  341 (384)
                      ....+...+......+.+.+..    + -..+...-++.|--+..-. +...+.+.+.++++.+-+.+.+..        
T Consensus       129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~  208 (532)
T KOG4464|consen  129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV  208 (532)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence            8877777777776666666521    1 1234444555555554433 455566778899999999987641        


Q ss_pred             ------chhHHHHHHHHHHHHhc
Q 016714          342 ------KKSIKKEACWTISNITA  358 (384)
Q Consensus       342 ------~~~v~~~a~~~L~nl~~  358 (384)
                            +-...-+|..++.|++.
T Consensus       209 ~~l~pqe~n~a~EaLK~~FNvt~  231 (532)
T KOG4464|consen  209 PPLNPQETNRACEALKVFFNVTC  231 (532)
T ss_pred             CCCCHHHHHHHHHHHHHHhheee
Confidence                  12455678889999986

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=83.64  E-value=26  Score=36.16  Aligned_cols=142  Identities=18%  Similarity=0.215  Sum_probs=85.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHH
Q 016714           78 SMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVI  157 (384)
Q Consensus        78 ~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~  157 (384)
                      .+...+.++++..-...+.++..+...+.-++..   ...-++.-..-.+..- ..+......+|..++.-.++....+.
T Consensus       445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l~  520 (727)
T PF12726_consen  445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKELL  520 (727)
T ss_pred             HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            3444455556555555555555554433222211   1111111111111111 35667788899999998888877777


Q ss_pred             h-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714          158 E-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       158 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~  234 (384)
                      . .++...++.++-++++++.+.|...|....+..  .|        .+.+-.++ +..-........|.|..+....
T Consensus       521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~--~R--------~e~i~~ll-~~~~~~tL~ai~~~l~~~~~~~  587 (727)
T PF12726_consen  521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD--GR--------LEAIQALL-QSNFSPTLSAINWSLRQLTKLK  587 (727)
T ss_pred             cCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC--cH--------HHHHHHHH-HHhHHHHHHHHHHHHHHHHhhh
Confidence            5 678999999999999999999999999987532  22        22223333 2223455677777777777654

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=83.45  E-value=6.7  Score=30.53  Aligned_cols=74  Identities=16%  Similarity=0.111  Sum_probs=56.3

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC--CChHHHHHHHHHHHHHhc
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRH--DMPQLQFEAAWALTNVAS  147 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~~L~nl~~  147 (384)
                      .++..+.+.|+++++.+|+.|+..|..+......+....+.....+..|+.++...  .++.++..++..+.+.+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            46788888899999999999999999887655233344555557888899999753  237899988888877665

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=83.26  E-value=5  Score=31.54  Aligned_cols=74  Identities=11%  Similarity=0.031  Sum_probs=57.3

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC-----CCChHHHHHHHHHHHHHhc
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR-----HDMPQLQFEAAWALTNVAS  147 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~~L~nl~~  147 (384)
                      .++..+.+.|++.++.+++.|+..|..+...........+...+++..|+.++..     ..++.++..++..+...+.
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4678888899999999999999999988765534445667788899999999963     1237888888888776654

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG2676 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.07  E-value=1  Score=40.57  Aligned_cols=78  Identities=9%  Similarity=0.055  Sum_probs=58.3

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC-CchhHHHHHHHHHHHHhcC---CHHHHHHHHhCCc----cccC
Q 016714          305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN-HKKSIKKEACWTISNITAG---NRAQIQVHDSFHL----FVLH  376 (384)
Q Consensus       305 ~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~---~~~~i~~l~~~~~----ll~~  376 (384)
                      ...+.++++|...++..+.+.+.|+++.++.-..-+ .+|-+++-...++.++...   +++.+..|-..+.    .+++
T Consensus       375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~kme~q~~~~~daL~k  454 (478)
T KOG2676|consen  375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKMEPQTTTHSDALEK  454 (478)
T ss_pred             HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcCCccccchHhHHHh
Confidence            477899999998888888888889988766654422 2889999999999999985   4444444445555    6777


Q ss_pred             CCcccc
Q 016714          377 EDFSLY  382 (384)
Q Consensus       377 ~~~~~~  382 (384)
                      +.|.++
T Consensus       455 aGFe~~  460 (478)
T KOG2676|consen  455 AGFESY  460 (478)
T ss_pred             cCcEEE
Confidence            777665

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=82.93  E-value=14  Score=33.08  Aligned_cols=136  Identities=14%  Similarity=0.142  Sum_probs=74.9

Q ss_pred             ChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh--hhhhchH----HHHHHhhc--------cCCHhHHHHHHHHH
Q 016714          203 ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF--EQVKPAL----PILQRLIH--------LNDEEVLTDACWAL  268 (384)
Q Consensus       203 ~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~--~~~~~~~----~~L~~lL~--------~~~~~i~~~a~~~l  268 (384)
                      ++|+++.++ ++.++.++..++.+|..+...-+....  ....|..    +.+..+|.        .+...+...+.-++
T Consensus       120 iiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            688899999 666899999999999999987544330  1112322    24444444        23456777777777


Q ss_pred             HHhccC-----C---hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC
Q 016714          269 SYLSDG-----P---NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN  340 (384)
Q Consensus       269 ~~l~~~-----~---~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~  340 (384)
                      ..|+..     .   ......++..|++..+...-....+.++...+..+..++..-....-..+ ..+++.|..++.++
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL-~rii~~l~~~l~np  277 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHL-QRIIPVLSQILENP  277 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHhcCC
Confidence            777431     1   12222334444444433333333466666666666666543111111111 13555666666554

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.20  E-value=50  Score=34.99  Aligned_cols=235  Identities=15%  Similarity=0.162  Sum_probs=133.9

Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCC--
Q 016714           95 TTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG--  172 (384)
Q Consensus        95 ~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~--  172 (384)
                      ..+|..++... .++...+.++.++..++.++-+   .+-+...++++..+....+.+..    ..-+-.++..|++.  
T Consensus       663 wDcLisllKnn-teNqklFreanGvklilpflin---dehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmv  734 (2799)
T KOG1788|consen  663 WDCLISLLKNN-TENQKLFREANGVKLILPFLIN---DEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMV  734 (2799)
T ss_pred             HHHHHHHHhcc-chhhHHHHhhcCceEEEEeeec---hHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcce
Confidence            34555565554 7788888888888888888843   35555556666555544343221    11234455555541  


Q ss_pred             ----------CHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc---------cchh----HHHHHHHHHHh-
Q 016714          173 ----------SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE---------HSKL----SMLRNATWTLS-  228 (384)
Q Consensus       173 ----------~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~---------~~~~----~~~~~a~~~L~-  228 (384)
                                ...+....+.+++.+.+-+...+..+-+.+++..|+..|-.         ..|.    ++.......+. 
T Consensus       735 t~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTl  814 (2799)
T KOG1788|consen  735 TRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTL  814 (2799)
T ss_pred             eccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHH
Confidence                      13455666778888877666677888888888887766621         1121    11122221111 


Q ss_pred             hhhcCCCCCChhhh----h----------c---------hHHHH----HHhhccCCHhHHHHHHHHHHHhccC-------
Q 016714          229 NFCRGKPPTPFEQV----K----------P---------ALPIL----QRLIHLNDEEVLTDACWALSYLSDG-------  274 (384)
Q Consensus       229 ~L~~~~~~~~~~~~----~----------~---------~~~~L----~~lL~~~~~~i~~~a~~~l~~l~~~-------  274 (384)
                      .+|.+. .......    .          +         .+..+    .+.+.+++-.--..||..+-.+-+.       
T Consensus       815 avcena-sNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntP  893 (2799)
T KOG1788|consen  815 AVCENA-SNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTP  893 (2799)
T ss_pred             HHhhcc-hhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccC
Confidence            122221 1111000    0          1         11111    1112222222223344444333221       


Q ss_pred             ---ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhc
Q 016714          275 ---PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLT  338 (384)
Q Consensus       275 ---~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~  338 (384)
                         .....+.+..+|++..++..+-...++.+..-++.+..++..++.........|+++.|+.++.
T Consensus       894 sGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy  960 (2799)
T KOG1788|consen  894 SGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY  960 (2799)
T ss_pred             CCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence               1233456788999999999998888999999999999999988877777777788888777664

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=81.94  E-value=58  Score=32.47  Aligned_cols=160  Identities=18%  Similarity=0.142  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHHHhcCCchhHHHHH---hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHH
Q 016714          132 PQLQFEAAWALTNVASGTSEHTRVVI---EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLL  208 (384)
Q Consensus       132 ~~~~~~a~~~L~nl~~~~~~~~~~i~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~  208 (384)
                      +++++-|+-+|.-+..+.+..-..+-   ....+..++..+. .++..+-.++++|.|+..+ +..+..+...  ...++
T Consensus       558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~  633 (745)
T KOG0301|consen  558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL  633 (745)
T ss_pred             HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence            67888888888777665443332222   2234555555555 4567778899999999988 4456655543  33333


Q ss_pred             HHhc---ccchhHHHHHHHHHHhhhhcCC--CCCChhhhhchHHHHHHhhcc-CCHhHHHHHHHHHHHhccCChHHHHHH
Q 016714          209 AQLN---EHSKLSMLRNATWTLSNFCRGK--PPTPFEQVKPALPILQRLIHL-NDEEVLTDACWALSYLSDGPNDKIQAV  282 (384)
Q Consensus       209 ~~l~---~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~~L~~lL~~-~~~~i~~~a~~~l~~l~~~~~~~~~~~  282 (384)
                      ..+.   ..++..++........|++-.-  ...+.....-+...+..++.. +|.+.....+-||++|+..+....+. 
T Consensus       634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~-  712 (745)
T KOG0301|consen  634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQL-  712 (745)
T ss_pred             hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHH-
Confidence            3332   2233455554444444443321  111122222223333333332 24455667778889988877655443 


Q ss_pred             HHcCChHHHHHhcC
Q 016714          283 IEAGVCPRLVELLM  296 (384)
Q Consensus       283 ~~~g~~~~L~~lL~  296 (384)
                      .+.--+..++.-+.
T Consensus       713 A~~~~v~sia~~~~  726 (745)
T KOG0301|consen  713 AKNRSVDSIAKKLK  726 (745)
T ss_pred             HHhcCHHHHHHHHH
Confidence            33333555555553

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=81.59  E-value=23  Score=27.54  Aligned_cols=96  Identities=15%  Similarity=0.119  Sum_probs=68.6

Q ss_pred             ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChH-HHHHHHHcCchHH
Q 016714          254 HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDA-QTQFVIDNGVLPC  332 (384)
Q Consensus       254 ~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~-~~~~i~~~g~l~~  332 (384)
                      ..+|.......|..+..-..+.         ..++..|-+-|.++++.++..|+..|-.++..... ....+.+...+..
T Consensus        14 ~~~D~~~il~icd~I~~~~~~~---------k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~   84 (133)
T cd03561          14 EEPDWALNLELCDLINLKPNGP---------KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLE   84 (133)
T ss_pred             CCccHHHHHHHHHHHhCCCCCH---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHH
Confidence            3456666666666665431111         12467788889999999999999999999887655 4444555578888


Q ss_pred             HHHHhcc--CCchhHHHHHHHHHHHHhc
Q 016714          333 LYQLLTQ--NHKKSIKKEACWTISNITA  358 (384)
Q Consensus       333 L~~ll~~--~~~~~v~~~a~~~L~nl~~  358 (384)
                      |.+++..  ..++.+++.+.-.+.+-+.
T Consensus        85 l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          85 LVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999976  3377899988887777764

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=81.56  E-value=6.7  Score=30.97  Aligned_cols=74  Identities=14%  Similarity=0.066  Sum_probs=58.8

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          160 GAVPMFVQLLSSGSDDVREQAVWALGNVAGDS-PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      .++..|.+-|.+.++.++-.|+..|-.+..++ ..+...+...++++.|..++....++.++..++..+..-+..
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~  115 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA  115 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence            35677777888889999999999988888764 447777888889999999986666778888888777766654

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=81.48  E-value=61  Score=32.41  Aligned_cols=135  Identities=19%  Similarity=0.184  Sum_probs=76.8

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC------CCcHHHHH-HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIER------SPPIDEVI-KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVA  146 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~------~~~~~~~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~  146 (384)
                      +.++-+++.++..|+++|..|+..++.....+.      +.+.+.+. ..|.+..+.+-+.  + ++.+...+-+|..||
T Consensus        48 ~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~--~-~n~Kk~laDIlSvLa  124 (878)
T KOG2005|consen   48 GDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMA--D-SNLKKWLADILSVLA  124 (878)
T ss_pred             hhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhcc--C-chhHhHHHHHHHHHh
Confidence            467999999999999999999999998775432      12222222 2233333333332  3 568888899998888


Q ss_pred             cCCchhHHHHH-h-cC-----------ChHHHHHhhcC---------C-CHHHHHHHHHHHHhhhCCCC--chhhHHHhc
Q 016714          147 SGTSEHTRVVI-E-HG-----------AVPMFVQLLSS---------G-SDDVREQAVWALGNVAGDSP--SCRDLVLSS  201 (384)
Q Consensus       147 ~~~~~~~~~i~-~-~g-----------~i~~L~~lL~~---------~-~~~v~~~a~~~L~nl~~~~~--~~~~~i~~~  201 (384)
                      -..++....+. . .|           .+..|..-+..         + -.++.+.+..++.-...++.  +..+.+++.
T Consensus       125 mt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~eAiDlL~Ev  204 (878)
T KOG2005|consen  125 MTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEFEAIDLLMEV  204 (878)
T ss_pred             eeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Confidence            76555444310 0 11           12222222211         1 13344444444444443332  245677777


Q ss_pred             CChHHHHHHh
Q 016714          202 GALMPLLAQL  211 (384)
Q Consensus       202 g~i~~L~~~l  211 (384)
                      +.++.+++..
T Consensus       205 e~id~l~~~V  214 (878)
T KOG2005|consen  205 EGIDLLLDYV  214 (878)
T ss_pred             hhHhHHHHHh
Confidence            7777777776

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=81.26  E-value=21  Score=28.79  Aligned_cols=111  Identities=14%  Similarity=0.232  Sum_probs=61.5

Q ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCC--------------------------------CCcHHHHHHcCCHHHH
Q 016714           76 IPSMVQGVWSE-DPALQLEATTQFRKLLSIER--------------------------------SPPIDEVIKAGVVPRF  122 (384)
Q Consensus        76 l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~--------------------------------~~~~~~~~~~g~i~~L  122 (384)
                      ++.+.+.|+.+ +..++.++++.+.-+-.-+.                                .+..++..-..++..|
T Consensus        12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi~~L   91 (160)
T PF11865_consen   12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVINAL   91 (160)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHHHHHH
Confidence            45566666654 47788888888875432210                                0112222333456667


Q ss_pred             HHhhcCCCChHHHHHHHHHHHHHhcC-CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhh
Q 016714          123 VEFLGRHDMPQLQFEAAWALTNVASG-TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA  188 (384)
Q Consensus       123 v~lL~~~~~~~~~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  188 (384)
                      +..|+++.....+..+..++.++... ...+ -.+.. .++|.++..++..+...++...+-|+.|.
T Consensus        92 ~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~-~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   92 MRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLP-QVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHH-HHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            77776655344455556666665532 1222 22222 36777777777666677777777666653

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=80.69  E-value=7.2  Score=33.05  Aligned_cols=97  Identities=16%  Similarity=0.262  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC-----CChhhHHHHHHHHHHhhcCC-hHHHHHHHHcCchHHH
Q 016714          260 VLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH-----PSATVLIPALRTVGNIVTGD-DAQTQFVIDNGVLPCL  333 (384)
Q Consensus       260 i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~-~~~~~~i~~~g~l~~L  333 (384)
                      -...++..+.-++.+++ ....++++.+--.+..+|..     .....+..++.++|.++..+ +.....+....++|.+
T Consensus       116 RvcnaL~lLQclaShPe-tk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc  194 (315)
T COG5209         116 RVCNALNLLQCLASHPE-TKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC  194 (315)
T ss_pred             HHHHHHHHHHHHhcCcc-hheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence            34455555566665554 34466777665556666632     23567889999999999765 4556667778999999


Q ss_pred             HHHhccCCchhHHHHHHHHHHHHhc
Q 016714          334 YQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       334 ~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ++++..+ ++--+--|++++.-+..
T Consensus       195 LrIme~g-SElSktvaifI~qkil~  218 (315)
T COG5209         195 LRIMELG-SELSKTVAIFIFQKILG  218 (315)
T ss_pred             HHHHHhh-hHHHHHHHHHHHHHHhc
Confidence            9999998 66666667777776665

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=80.41  E-value=38  Score=29.32  Aligned_cols=201  Identities=17%  Similarity=0.176  Sum_probs=110.2

Q ss_pred             HHHHH-HhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           77 PSMVQ-GVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        77 ~~lv~-~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      +.++. .-+..++..+...+..|..++... +.....     ++..+..+.+.+. .+.+.-+.+.+..+...++..-  
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~-~~~~~~-----v~~~L~~L~~~~~-~~~~~~~~rLl~~lw~~~~r~f--   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHK-NVCVPP-----VLQTLVSLVEQGS-LELRYVALRLLTLLWKANDRHF--   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccC-ccchhH-----HHHHHHHHHcCCc-hhHHHHHHHHHHHHHHhCchHH--
Confidence            34444 334667889999999999887754 133322     3556666666666 6667778888888877544322  


Q ss_pred             HHhcCChHHHHHh-----h---c--CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHH
Q 016714          156 VIEHGAVPMFVQL-----L---S--SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATW  225 (384)
Q Consensus       156 i~~~g~i~~L~~l-----L---~--~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~  225 (384)
                          +.+..++..     .   .  +...+..-..+.++..+|...|..     -...++.+..+|..+.++..+..++.
T Consensus        74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale  144 (234)
T PF12530_consen   74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALE  144 (234)
T ss_pred             ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHH
Confidence                233333333     0   1  122344445567888888777651     11245666677744556667888889


Q ss_pred             HHhhhhcCCCCCChhhhhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCCh--HHHHHHHHcCChHHHHHhcCCCCh
Q 016714          226 TLSNFCRGKPPTPFEQVKPALPILQRLIHLN-DEEVLTDACWALSYLSDGPN--DKIQAVIEAGVCPRLVELLMHPSA  300 (384)
Q Consensus       226 ~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~i~~~a~~~l~~l~~~~~--~~~~~~~~~g~~~~L~~lL~~~~~  300 (384)
                      ++..||... ..   ........+.+-+..+ .+.+....+..+..+..+..  +.. ......++..+-++..+.+.
T Consensus       145 ~l~~Lc~~~-vv---d~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~-~~~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  145 ALAPLCEAE-VV---DFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEY-EELKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             HHHHHHHHh-hc---cHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhh-hHHHHHHHHHHHhhcccccc
Confidence            999999542 11   1123334444444333 35555554544444443322  222 12333455555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	384
4b8j_A	528	Rimp_alpha1a Length = 528		1e-160
4b8j_A	528	Rimp_alpha1a Length = 528		7e-13
2yns_A	490	Rimp_alpha_b54nls Length = 490		1e-144
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		2e-97
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		2e-97
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		7e-95
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-92
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		2e-92
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		2e-92
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		2e-92
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		2e-92
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		2e-92
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		3e-88
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-04
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		2e-86
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		3e-04
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		2e-86
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		3e-04
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		2e-86
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		3e-04
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		2e-86
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		3e-04
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		2e-86
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		3e-04
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		2e-86
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		4e-04
1ial_A	453	Importin Alpha, Mouse Length = 453		2e-86
1ial_A	453	Importin Alpha, Mouse Length = 453		3e-04
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		2e-86
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		3e-04
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		2e-86
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		4e-04
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		2e-86
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		4e-04
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		2e-86
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		3e-04
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		2e-86
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		4e-04
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		3e-86
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		4e-04
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		3e-86
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		4e-04
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		8e-86
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		1e-33
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		4e-29
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-23
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		4e-23
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		3e-23
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		3e-23
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		3e-23
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		4e-23

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  561 bits (1445), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/365 (75%), Positives = 308/365 (84%), Gaps = 2/365 (0%)
Query: 1   MSLRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREXXXXXXXXX 60
           MSLRPS R EVR+  YK  V           N+VEIRK++RE++LLKKRRE         
Sbjct: 3   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61  XXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVP 120
              A+   ++KKLES+P+M+ GV+S+D  LQLEATTQFRKLLSIERSPPI+EVI++GVVP
Sbjct: 63  ASAAT--GVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
Query: 121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQA 180
           RFV+FL R D PQLQFEAAWALTN+ASGTSE+T+VVI+HGAVP+FV+LL S SDDVREQA
Sbjct: 121 RFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA 180
Query: 181 VWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE 240
           VWALGNVAGDSP CRDLVL++GAL+PLLAQLNEH+KLSMLRNATWTLSNFCRGKP   FE
Sbjct: 181 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 240
Query: 241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300
           Q +PALP L RLIH NDEEVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELL+HPS 
Sbjct: 241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 300
Query: 301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
           +VLIPALRTVGNIVTGDDAQTQ +ID+  LPCL  LLTQN KKSIKKEACWTISNITAGN
Sbjct: 301 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN 360
Query: 361 RAQIQ 365
           + QIQ
Sbjct: 361 KDQIQ 365

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 92/184 (50%), Gaps = 10/184 (5%)
Query: 137 EAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD 196
           +A WAL+ ++ GT++  + VIE G  P  V+LL   S  V   A+  +GN+     +   
Sbjct: 263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322
Query: 197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPI-----LQR 251
            ++   AL  LL+ L ++ K S+ + A WT+SN   G      +Q++  +       L  
Sbjct: 323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK----DQIQAVINAGIIGPLVN 378
Query: 252 LIHLNDEEVLTDACWALS-YLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310
           L+   + ++  +A WA+S   S G +D+I+ ++  G    L +LL+ P   ++   L  +
Sbjct: 379 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 438
Query: 311 GNIV 314
            NI+
Sbjct: 439 ENIL 442

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  506 bits (1304), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/303 (80%), Positives = 269/303 (88%)
Query: 63  DASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRF 122
           D    A+     S+P+M+ GV+S+D  LQLEATTQFRKLLSIERSPPI+EVI++GVVPRF
Sbjct: 25  DDDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 84
Query: 123 VEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVW 182
           V+FL R D PQLQFEAAWALTN+ASGTSE+T+VVI+HGAVP+FV+LL S SDDVREQAVW
Sbjct: 85  VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 144
Query: 183 ALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV 242
           ALGNVAGDSP CRDLVL++GAL+PLLAQLNEH+KLSMLRNATWTLSNFCRGKP   FEQ 
Sbjct: 145 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 204
Query: 243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATV 302
           +PALP L RLIH NDEEVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELL+HPS +V
Sbjct: 205 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 264
Query: 303 LIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRA 362
           LIPALRTVGNIVTGDDAQTQ +ID+  LPCL  LLTQN KKSIKKEACWTISNITAGN+ 
Sbjct: 265 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 324
Query: 363 QIQ 365
           QIQ
Sbjct: 325 QIQ 327

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  352 bits (903), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 183/297 (61%), Positives = 218/297 (73%), Gaps = 3/297 (1%)
Query: 79  MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGRHDMPQLQFE 137
           M++ ++S+ P  QL AT +FRKLLS E +PPIDEVI   GVV RFVEFL R +   LQFE
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 138 AAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL 197
           +AW LTN+ASG S  TR+VI+ GAVP+F++LLSS  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIHLN 256
           VL    L PLL   ++ ++L+M RNA W LSN CRGK P P F +V P L +L  L+ ++
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 257 DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG 316
           D +VL DACWALSYLSDGPNDKIQAVI+AGVC RLVELLMH    V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 317 DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLF 373
           DD QTQ VI N         L  + K+SIKKEACWTISNITAGNRAQIQ     ++F
Sbjct: 262 DDIQTQ-VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF 317

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  352 bits (903), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 183/297 (61%), Positives = 218/297 (73%), Gaps = 3/297 (1%)
Query: 79  MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGRHDMPQLQFE 137
           M++ ++S+ P  QL AT +FRKLLS E +PPIDEVI   GVV RFVEFL R +   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 138 AAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL 197
           +AW LTN+ASG S  TR+VI+ GAVP+F++LLSS  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIHLN 256
           VL    L PLL   ++ ++L+M RNA W LSN CRGK P P F +V P L +L  L+ ++
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 257 DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG 316
           D +VL DACWALSYLSDGPNDKIQAVI+AGVC RLVELLMH    V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 317 DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLF 373
           DD QTQ VI N         L  + K+SIKKEACWTISNITAGNRAQIQ     ++F
Sbjct: 265 DDIQTQ-VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF 320

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  343 bits (881), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 185/339 (54%), Positives = 228/339 (67%), Gaps = 9/339 (2%)
Query: 34  VEIRKNKREDNLLKKRR------EXXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSED 87
           VE+RK KR++ L K+R                    A Q    +  + +P M Q + S+D
Sbjct: 41  VELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDD 100
Query: 88  PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVAS 147
              QL AT +FR++LS E  PPID VI+AGVVPR VEF+  +    LQ EAAWALTN+AS
Sbjct: 101 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 160
Query: 148 GTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPL 207
           GTS  T+VV++  AVP+F+QLL +GS +V+EQA+WALGNVAGDS   RD VL   A+ P+
Sbjct: 161 GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 220
Query: 208 LAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIHLNDEEVLTDACW 266
           L   N + K S++R ATWTLSN CRGK P P +  V  ALP L +LI+  D E L DACW
Sbjct: 221 LGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACW 279
Query: 267 ALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVID 326
           A+SYLSDGP + IQAVI+  +  RLVELL H S  V  PALR VGNIVTG+D QTQ VI+
Sbjct: 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN 339
Query: 327 NGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
            GVLP L +LL  + K++IKKEACWTISNITAGN  QIQ
Sbjct: 340 AGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQ 377

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  336 bits (861), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 174/293 (59%), Positives = 212/293 (72%), Gaps = 3/293 (1%)
Query: 74  ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
           + +P M Q + S+D   QL AT +FR++LS E  PPID VI+AGVVPR VEF+  +    
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS 193
           LQ EAAWALTN+ASGTS  T+VV++  AVP+F+QLL +GS +V+EQA+WALGNVAGDS  
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRL 252
            RD VL   A+ P+L   N + K S++R ATWTLSN CRGK P P +  V  ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 253 IHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312
           I+  D E L DACWA+SYLSDGP + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           IVTG+D QTQ VI+ GVLP L +LL  + K++IKKEACWTISNITAGN  QIQ
Sbjct: 240 IVTGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQ 291

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  336 bits (861), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 174/293 (59%), Positives = 212/293 (72%), Gaps = 3/293 (1%)
Query: 74  ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
           + +P M Q + S+D   QL AT +FR++LS E  PPID VI+AGVVPR VEF+  +    
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS 193
           LQ EAAWALTN+ASGTS  T+VV++  AVP+F+QLL +GS +V+EQA+WALGNVAGDS  
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRL 252
            RD VL   A+ P+L   N + K S++R ATWTLSN CRGK P P +  V  ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 253 IHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312
           I+  D E L DACWA+SYLSDGP + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           IVTG+D QTQ VI+ GVLP L +LL  + K++IKKEACWTISNITAGN  QIQ
Sbjct: 240 IVTGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQ 291

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  335 bits (860), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 174/291 (59%), Positives = 211/291 (72%), Gaps = 3/291 (1%)
Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           +P M Q + S+D   QL AT +FR++LS E  PPID VI+AGVVPR VEF+  +    LQ
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
            EAAWALTN+ASGTS  T+VV++  AVP+F+QLL +GS +V+EQA+WALGNVAGDS   R
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIH 254
           D VL   A+ P+L   N + K S++R ATWTLSN CRGK P P +  V  ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 255 LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314
             D E L DACWA+SYLSDGP + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 315 TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           TG+D QTQ VI+ GVLP L +LL  + K++IKKEACWTISNITAGN  QIQ
Sbjct: 240 TGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQ 289

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  335 bits (860), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 174/291 (59%), Positives = 211/291 (72%), Gaps = 3/291 (1%)
Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           +P M Q + S+D   QL AT +FR++LS E  PPID VI+AGVVPR VEF+  +    LQ
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
            EAAWALTN+ASGTS  T+VV++  AVP+F+QLL +GS +V+EQA+WALGNVAGDS   R
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIH 254
           D VL   A+ P+L   N + K S++R ATWTLSN CRGK P P +  V  ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 255 LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314
             D E L DACWA+SYLSDGP + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 315 TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           TG+D QTQ VI+ GVLP L +LL  + K++IKKEACWTISNITAGN  QIQ
Sbjct: 241 TGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQ 290

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  335 bits (860), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 174/291 (59%), Positives = 211/291 (72%), Gaps = 3/291 (1%)
Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           +P M Q + S+D   QL AT +FR++LS E  PPID VI+AGVVPR VEF+  +    LQ
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
            EAAWALTN+ASGTS  T+VV++  AVP+F+QLL +GS +V+EQA+WALGNVAGDS   R
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIH 254
           D VL   A+ P+L   N + K S++R ATWTLSN CRGK P P +  V  ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 255 LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314
             D E L DACWA+SYLSDGP + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 315 TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           TG+D QTQ VI+ GVLP L +LL  + K++IKKEACWTISNITAGN  QIQ
Sbjct: 240 TGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQ 289

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  335 bits (859), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 174/291 (59%), Positives = 211/291 (72%), Gaps = 3/291 (1%)
Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           +P M Q + S+D   QL AT +FR++LS E  PPID VI+AGVVPR VEF+  +    LQ
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
            EAAWALTN+ASGTS  T+VV++  AVP+F+QLL +GS +V+EQA+WALGNVAGDS   R
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIH 254
           D VL   A+ P+L   N + K S++R ATWTLSN CRGK P P +  V  ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 255 LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314
             D E L DACWA+SYLSDGP + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 315 TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           TG+D QTQ VI+ GVLP L +LL  + K++IKKEACWTISNITAGN  QIQ
Sbjct: 241 TGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQ 290

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  322 bits (824), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 170/337 (50%), Positives = 227/337 (67%), Gaps = 6/337 (1%)
Query: 34  VEIRKNKREDNLLKKRREXXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLE 93
           VE+RK K+++ +LK+R               ++N       S+  +V+G+ S +   QL+
Sbjct: 36  VELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQ 95
Query: 94  ATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153
           AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +QFE+AWALTN+ASGTSE T
Sbjct: 96  ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155
Query: 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN- 212
           + V++ GA+P F+ LL+S    + EQAVWALGN+AG   + RDLV+  GA+ PLLA L  
Sbjct: 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAV 215
Query: 213 -EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPILQRLIHLNDEEVLTDACWAL 268
            + S L+   LRN TWTLSN CR K P  P + V+  LP L RL+H ND EVL D+CWA+
Sbjct: 216 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 275
Query: 269 SYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNG 328
           SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR +GNIVTG D QTQ VID G
Sbjct: 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 335
Query: 329 VLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
            L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 336 ALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 371

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
           ++ WAL+ ++ G +++ +AV++ G  P  + LL  P A +   A+  +GNI     A   
Sbjct: 139 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRD 198
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
            VI +G                                               +LP L +
Sbjct: 199 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 258
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           LL  N  + +  ++CW IS +T G   +I++
Sbjct: 259 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 288

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  316 bits (809), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +
Sbjct: 44  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + 
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
           RDLV+  GA+ PLLA L   + S L+   LRN TWTLSN CR K P  P + V+  LP L
Sbjct: 164 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 223
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 224 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 283
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +GNIVTG D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 284 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 338

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
           ++ WAL+ ++ G +++ +AV++ G  P  + LL  P A +   A+  +GNI     A   
Sbjct: 106 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 165
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
            VI +G                                               +LP L +
Sbjct: 166 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 225
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           LL  N  + +  ++CW IS +T G   +I++
Sbjct: 226 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 255

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  316 bits (809), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + 
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
           RDLV+  GA+ PLLA L   + S L+   LRN TWTLSN CR K P  P + V+  LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +GNIVTG D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 352

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
           ++ WAL+ ++ G +++ +AV++ G  P  + LL  P A +   A+  +GNI     A   
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
            VI +G                                               +LP L +
Sbjct: 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 239
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           LL  N  + +  ++CW IS +T G   +I++
Sbjct: 240 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 269

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + 
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
           RDLV+  GA+ PLLA L   + S L+   LRN TWTLSN CR K P  P + V+  LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +GNIVTG D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 352

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
           ++ WAL+ ++ G +++ +AV++ G  P  + LL  P A +   A+  +GNI     A   
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
            VI +G                                               +LP L +
Sbjct: 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 239
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           LL  N  + +  ++CW IS +T G   +I++
Sbjct: 240 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 269

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + 
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
           RDLV+  GA+ PLLA L   + S L+   LRN TWTLSN CR K P  P + V+  LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +GNIVTG D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 352

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
           ++ WAL+ ++ G +++ +AV++ G  P  + LL  P A +   A+  +GNI     A   
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
            VI +G                                               +LP L +
Sbjct: 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 239
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           LL  N  + +  ++CW IS +T G   +I++
Sbjct: 240 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 269

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + 
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
           RDLV+  GA+ PLLA L   + S L+   LRN TWTLSN CR K P  P + V+  LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +GNIVTG D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 302

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
           ++ WAL+ ++ G +++ +AV++ G  P  + LL  P A +   A+  +GNI     A   
Sbjct: 70  ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 129
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
            VI +G                                               +LP L +
Sbjct: 130 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 189
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           LL  N  + +  ++CW IS +T G   +I++
Sbjct: 190 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 219

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + 
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
           RDLV+  GA+ PLLA L   + S L+   LRN TWTLSN CR K P  P + V+  LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +GNIVTG D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 302

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
           ++ WAL+ ++ G +++ +AV++ G  P  + LL  P A +   A+  +GNI     A   
Sbjct: 70  ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 129
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
            VI +G                                               +LP L +
Sbjct: 130 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 189
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           LL  N  + +  ++CW IS +T G   +I++
Sbjct: 190 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 219

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +
Sbjct: 34  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + 
Sbjct: 94  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 153
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
           RDLV+  GA+ PLLA L   + S L+   LRN TWTLSN CR K P  P + V+  LP L
Sbjct: 154 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 213
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 214 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 273
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +GNIVTG D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 274 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 328

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
           ++ WAL+ ++ G +++ +AV++ G  P  + LL  P A +   A+  +GNI     A   
Sbjct: 96  ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 155
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
            VI +G                                               +LP L +
Sbjct: 156 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 215
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           LL  N  + +  ++CW IS +T G   +I++
Sbjct: 216 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 245

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +
Sbjct: 14  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + 
Sbjct: 74  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
           RDLV+  GA+ PLLA L   + S L+   LRN TWTLSN CR K P  P + V+  LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +GNIVTG D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 308

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
           ++ WAL+ ++ G +++ +AV++ G  P  + LL  P A +   A+  +GNI     A   
Sbjct: 76  ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 135
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
            VI +G                                               +LP L +
Sbjct: 136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 195
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           LL  N  + +  ++CW IS +T G   +I++
Sbjct: 196 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 225

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +
Sbjct: 7   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + 
Sbjct: 67  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
           RDLV+  GA+ PLLA L   + S L+   LRN TWTLSN CR K P  P + V+  LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +GNIVTG D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 301

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
           ++ WAL+ ++ G +++ +AV++ G  P  + LL  P A +   A+  +GNI     A   
Sbjct: 69  ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 128
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
            VI +G                                               +LP L +
Sbjct: 129 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 188
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           LL  N  + +  ++CW IS +T G   +I++
Sbjct: 189 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 218

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + 
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
           RDLV+  GA+ PLLA L   + S L+   LRN TWTLSN CR K P  P + V+  LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +GNIVTG D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 302

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
           ++ WAL+ ++ G +++ +AV++ G  P  + LL  P A +   A+  +GNI     A   
Sbjct: 70  ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 129
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
            VI +G                                               +LP L +
Sbjct: 130 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 189
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           LL  N  + +  ++CW IS +T G   +I++
Sbjct: 190 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 219

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +
Sbjct: 42  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + 
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
           RDLV+  GA+ PLLA L   + S L+   LRN TWTLSN CR K P  P + V+  LP L
Sbjct: 162 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 221
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 222 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 281
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +GNIVTG D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 282 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 336

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
           ++ WAL+ ++ G +++ +AV++ G  P  + LL  P A +   A+  +GNI     A   
Sbjct: 104 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 163
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
            VI +G                                               +LP L +
Sbjct: 164 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 223
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           LL  N  + +  ++CW IS +T G   +I++
Sbjct: 224 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 253

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +
Sbjct: 7   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + 
Sbjct: 67  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
           RDLV+  GA+ PLLA L   + S L+   LRN TWTLSN CR K P  P + V+  LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +GNIVTG D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 301

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
           ++ WAL+ ++ G +++ +AV++ G  P  + LL  P A +   A+  +GNI     A   
Sbjct: 69  ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 128
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
            VI +G                                               +LP L +
Sbjct: 129 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 188
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           LL  N  + +  ++CW IS +T G   +I++
Sbjct: 189 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 218

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  315 bits (807), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + 
Sbjct: 63  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
           RDLV+  GA+ PLLA L   + S L+   LRN TWTLSN CR K P  P + V+  LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +GNIVTG D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 297

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
           ++ WAL+ ++ G +++ +AV++ G  P  + LL  P A +   A+  +GNI     A   
Sbjct: 65  ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 124
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
            VI +G                                               +LP L +
Sbjct: 125 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 184
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           LL  N  + +  ++CW IS +T G   +I++
Sbjct: 185 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 214

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  315 bits (807), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + 
Sbjct: 63  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
           RDLV+  GA+ PLLA L   + S L+   LRN TWTLSN CR K P  P + V+  LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +GNIVTG D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 297

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
           ++ WAL+ ++ G +++ +AV++ G  P  + LL  P A +   A+  +GNI     A   
Sbjct: 65  ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 124
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
            VI +G                                               +LP L +
Sbjct: 125 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 184
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           LL  N  + +  ++CW IS +T G   +I++
Sbjct: 185 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 214

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  313 bits (803), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 162/296 (54%), Positives = 208/296 (70%), Gaps = 6/296 (2%)
Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLGR D   +
Sbjct: 9   SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPI 68
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD    
Sbjct: 69  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF 128
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
           RDLV+  GA+ PLLA L   + S L+   LRN TWTLSN CR K P  P + V+  LP L
Sbjct: 129 RDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTL 188
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H +D EVL D CWA+SYL+DGPN++I  V++ GV P+LV+LL      ++ PALR 
Sbjct: 189 VRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRA 248
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +GNIVTG D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 249 IGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 303

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 133/236 (56%), Gaps = 12/236 (5%)
Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
           +P+  + L   DM Q Q  A    + + S  +E  + VI+ GA+P  VQLLSS ++ + +
Sbjct: 14  LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
           +A+WAL N+A         V+ +GAL P L QL       +L+ A W LSN   G     
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGG---- 127
Query: 239 FEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVE 293
            EQ++      ALP L +L+   +E++L +A WALS ++ G N++IQAVI+AG  P LV+
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 187
Query: 294 LLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEA 349
           LL  P+  +L  AL  + NI +G + Q Q V + G L  L QL +  ++K I+KEA
Sbjct: 188 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEA 242

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  125 bits (314), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/212 (38%), Positives = 117/212 (55%), Gaps = 15/212 (7%)
Query: 162 VPMFVQLLSSGSDDVREQ--AVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSM 219
           +P   Q L+S  DD++EQ  A      +  D       V+ +GAL P L QL       +
Sbjct: 14  LPQMTQQLNS--DDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQI 70
Query: 220 LRNATWTLSNFCRGKPPTPFEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYLSDG 274
           L+ A W LSN   G      EQ++      ALP L +L+   +E++L +A WALS ++ G
Sbjct: 71  LQEALWALSNIASGG----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126
Query: 275 PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLY 334
            N++IQAVI+AG  P LV+LL  P+  +L  AL  + NI +G + Q Q VID G LP L 
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 186
Query: 335 QLLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           QLL+  +++ I +EA W +SNI +G   Q Q 
Sbjct: 187 QLLSSPNEQ-ILQEALWALSNIASGGNEQKQA 217

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/198 (37%), Positives = 110/198 (55%), Gaps = 6/198 (3%)
Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           +P M Q + S+D   QL AT +F ++LS + +  I  VI AG +P  V+ L   +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
            EA WAL+N+ASG +E  + VI+ GA+P  VQLLSS ++ + ++A+WAL N+A       
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP--ALPILQRLI 253
             V+ +GAL P L QL       +L+ A W LSN   G      + VK   AL  L++L 
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQK-QAVKEAGALEKLEQLQ 189
Query: 254 HLNDEEVLTDACWALSYL 271
              +E++  +A  AL  L
Sbjct: 190 SHENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Query: 245 ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLI 304
           ALP L +L+   +E++L +A WALS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQI 364
            AL  + NI +G + Q Q VID G LP L QLL+  +++ I +EA W +SNI +G   Q 
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQK 173
Query: 365 QV 366
           Q 
Sbjct: 174 QA 175

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 118/245 (48%), Gaps = 54/245 (22%)
Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
           +P+ V+ L   D  +LQ  A   L+ +ASG +E  + VI+ GA+P  VQ           
Sbjct: 14  LPQMVQQLNSPDQQELQS-ALRKLSQIASGGNEQIQAVIDAGALPALVQ----------- 61
Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
                                       LL+  NE     +L+ A W LSN   G     
Sbjct: 62  ----------------------------LLSSPNEQ----ILQEALWALSNIASGG---- 85
Query: 239 FEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVE 293
            EQ++      ALP L +L+   +E++L +A WALS ++ G N++IQAVI+AG  P LV+
Sbjct: 86  NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145
Query: 294 LLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI 353
           LL  P+  +L  AL  + NI +G + Q Q V + G  P L QL +  ++K I+KEA   +
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEK-IQKEAQEAL 204
Query: 354 SNITA 358
             I +
Sbjct: 205 EKIQS 209

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 90/152 (59%), Gaps = 10/152 (6%)
Query: 220 LRNATWTLSNFCRGKPPTPFEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYLSDG 274
           L++A   LS    G      EQ++      ALP L +L+   +E++L +A WALS ++ G
Sbjct: 29  LQSALRKLSQIASGG----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84
Query: 275 PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLY 334
            N++IQAVI+AG  P LV+LL  P+  +L  AL  + NI +G + Q Q VID G LP L 
Sbjct: 85  GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 144
Query: 335 QLLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           QLL+  +++ I +EA W +SNI +G   Q Q 
Sbjct: 145 QLLSSPNEQ-ILQEALWALSNIASGGNEQKQA 175

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 90/152 (59%), Gaps = 10/152 (6%)
Query: 220 LRNATWTLSNFCRGKPPTPFEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYLSDG 274
           L++A   LS    G      EQ++      ALP L +L+   +E++L +A WALS ++ G
Sbjct: 29  LQSALRKLSQIASGG----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84
Query: 275 PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLY 334
            N++IQAVI+AG  P LV+LL  P+  +L  AL  + NI +G + Q Q VID G LP L 
Sbjct: 85  GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 144
Query: 335 QLLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           QLL+  +++ I +EA W +SNI +G   Q Q 
Sbjct: 145 QLLSSPNEQ-ILQEALWALSNIASGGNEQKQA 175

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 130/248 (52%), Gaps = 14/248 (5%)
Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
           V + V+ L   D  + Q EAA  L  +ASG +   + +++ G V + V+LL+S   +V++
Sbjct: 4   VEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 179 QAVWALGNVA-GDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT 237
           +A  AL N+A G   + + +V + G  + +L +L   +   + + A   L+N   G    
Sbjct: 63  EAARALANIASGPDEAIKAIVDAGG--VEVLVKLLTSTDSEVQKEAARALANIASG---- 116
Query: 238 PFEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLV 292
           P E +K       + +L +L+   D EV  +A  AL+ ++ GP++ I+A+++AG    LV
Sbjct: 117 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV 176
Query: 293 ELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWT 352
           +LL    + V   A R + NI +G  +  + ++D G +  L +LLT    + ++KEA   
Sbjct: 177 KLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSE-VQKEAQRA 235
Query: 353 ISNITAGN 360
           + NI +G 
Sbjct: 236 LENIKSGG 243

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-149
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-45
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-40
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-24
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-141
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-42
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-41
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-08
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-137
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-54
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-50
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-41
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-35
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-92
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-45
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-35
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-87
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-56
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-54
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-50
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-42
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-40
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-34
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-25
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-16
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-11
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-87
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-62
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-48
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-46
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-41
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-40
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-32
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	9e-72
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	9e-63
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-62
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-55
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-47
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-34
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-14
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-12
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-60
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	7e-27
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-12
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-57
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-22
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-54
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-52
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-37
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-51
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-14
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-11
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-10
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-09
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-49
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-21
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-14
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-43
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-27
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-18
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-16
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-16
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-07
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-39
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-14
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	9e-11
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-10
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-35
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-30
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-28
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-28
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-27
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-19
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	4e-12
1qgk_B	44	Protein (importin alpha-2 subunit); transport rece	1e-12
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	6e-10
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	4e-07
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	2e-09
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	7e-09
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-08
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-08
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	7e-08
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	5e-08
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-06
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	1e-06
3grl_A	651	General vesicular transport factor P115; vesicle t	3e-06
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	7e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-04
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	6e-04

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  432 bits (1111), Expect = e-149
 Identities = 195/366 (53%), Positives = 243/366 (66%), Gaps = 11/366 (3%)

Query: 9   AEVRKKGYKT--GVDADEARRRREDNLVEIRKNKREDNLLKKRR------EGLLLQPQQQ 60
            E R+  +K      ADE RRRR+   VE+RK KR++ L K+R            +  + 
Sbjct: 14  PEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDES 73

Query: 61  GLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVP 120
            + A Q    +  + +P M Q + S+D   QL AT +FR++LS E  PPID VI+AGVVP
Sbjct: 74  SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133

Query: 121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQA 180
           R VEF+  +    LQ EAAWALTN+ASGTS  T+VV++  AVP+F+QLL +GS +V+EQA
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193

Query: 181 VWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-F 239
           +WALGNVAGDS   RD VL   A+ P+L   N  +K S++R ATWTLSN CRGK P P +
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-SNKPSLIRTATWTLSNLCRGKKPQPDW 252

Query: 240 EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS 299
             V  ALP L +LI+  D E L DACWA+SYLSDGP + IQAVI+  +  RLVELL H S
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312

Query: 300 ATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG 359
             V  PALR VGNIVTG+D QTQ VI+ GVLP L  LL  + K++IKKEACWTISNITAG
Sbjct: 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAG 371

Query: 360 NRAQIQ 365
           N  QIQ
Sbjct: 372 NTEQIQ 377

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  162 bits (412), Expect = 2e-45
 Identities = 57/285 (20%), Positives = 111/285 (38%), Gaps = 8/285 (2%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           +P  +Q +++    ++ +A      + + + +   D V++   +   +      + P L 
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNV-AGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLI 232

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
             A W L+N+  G        +   A+P   +L+ S   +    A WA+  ++       
Sbjct: 233 RTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAI 292

Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP-ALPILQRLIH 254
             V+        L +L  H    +   A   + N   G        +    LP L+ L+ 
Sbjct: 293 QAVIDVRIP-KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351

Query: 255 LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314
              E +  +ACW +S ++ G  ++IQAVI+A + P LV+LL          A   + N  
Sbjct: 352 SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 411

Query: 315 TG---DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI 356
           +G        ++++  G +  L  LL     + I +     + NI
Sbjct: 412 SGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR-IIEVTLDALENI 455

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  149 bits (376), Expect = 2e-40
 Identities = 66/300 (22%), Positives = 126/300 (42%), Gaps = 29/300 (9%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           +  ++    S  P+L   AT     L    + P  D  + +  +P   + +      +  
Sbjct: 217 MEPILGLFNSNKPSLIRTATWTLSNL-CRGKKPQPDWSVVSQALPTLAKLI-YSMDTETL 274

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
            +A WA++ ++ G  E  + VI+       V+LLS  S  V+  A+ A+GN+   +    
Sbjct: 275 VDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 334

Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP-----ALPILQ 250
            +V+++G L P L  L    K ++ + A WT+SN   G      EQ++       +P L 
Sbjct: 335 QVVINAGVL-PALRLLLSSPKENIKKEACWTISNITAGNT----EQIQAVIDANLIPPLV 389

Query: 251 RLIHLNDEEVLTDACWALSYLSDGPNDK---IQAVIEAGVCPRLVELLMHPSATVLIPAL 307
           +L+ + + +   +ACWA+S  S G   +   I+ ++  G    L +LL      ++   L
Sbjct: 390 KLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTL 449

Query: 308 RTVGNIVTGDDAQ-----------TQFVIDNGVLPCLYQLLTQNHK-KSIKKEACWTISN 355
             + NI+   +A              F+   G +  ++    Q ++   I ++A   I  
Sbjct: 450 DALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC--QQNENDKIYEKAYKIIET 507

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  103 bits (257), Expect = 3e-24
 Identities = 40/241 (16%), Positives = 84/241 (34%), Gaps = 43/241 (17%)

Query: 128 RHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV 187
           R +       A     + +S +++          +P   Q L+S     +  A      +
Sbjct: 55  RRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQI 114

Query: 188 A-GDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPAL 246
              +     D+V+ +G +  L+  + E+                                
Sbjct: 115 LSREHRPPIDVVIQAGVVPRLVEFMREN-------------------------------- 142

Query: 247 PILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPA 306
                      E +  +A WAL+ ++ G + + + V++A   P  ++LL   S  V   A
Sbjct: 143 ---------QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193

Query: 307 LRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
           +  +GN+         +V+    +  +  L   ++K S+ + A WT+SN+  G + Q   
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPDW 252

Query: 367 H 367
            
Sbjct: 253 S 253

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  410 bits (1055), Expect = e-141
 Identities = 165/348 (47%), Positives = 217/348 (62%), Gaps = 8/348 (2%)

Query: 23  DEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESIPSMVQG 82
                 R   + E    K E   +     G     +   +    +       S+  +V+G
Sbjct: 8   SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKA--MADIGSNQGTVNWSVEDIVKG 65

Query: 83  VWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 142
           + S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +QFE+AWAL
Sbjct: 66  INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 125

Query: 143 TNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSG 202
           TN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + RDLV+  G
Sbjct: 126 TNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHG 185

Query: 203 ALMPLLAQLNEHS----KLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIHLND 257
           A+ PLLA L            LRN TWTLSN CR K P P  + V+  LP L RL+H ND
Sbjct: 186 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 245

Query: 258 EEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD 317
            EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR +GNIVTG 
Sbjct: 246 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305

Query: 318 DAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           D QTQ VID G L     LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 306 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 352

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  154 bits (391), Expect = 1e-42
 Identities = 60/273 (21%), Positives = 121/273 (44%), Gaps = 13/273 (4%)

Query: 102 LSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGA 161
           L   ++P         ++P  V  L  +D P++  ++ WA++ +  G +E   +V++ G 
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKGV 275

Query: 162 VPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLR 221
           VP  V+LL +    +   A+ A+GN+   +      V+ +GAL  +   L  + K ++ +
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL-AVFPSLLTNPKTNIQK 334

Query: 222 NATWTLSNFCRGKPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYL-SDGPNDKI 279
            ATWT+SN   G+     +      +P L  ++   D +   +A WA++   S G  ++I
Sbjct: 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQI 394

Query: 280 QAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI------VTGDDAQTQFVIDNGVLPCL 333
             ++  G+   L+ LL      ++   L  + NI      +   +  +  + + G L  +
Sbjct: 395 VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 454

Query: 334 YQLLTQNHK-KSIKKEACWTISNITAGNRAQIQ 365
             L  Q H+ +S+ K +   I    +    + Q
Sbjct: 455 EAL--QRHENESVYKASLNLIEKYFSVEEEEDQ 485

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  151 bits (382), Expect = 2e-41
 Identities = 54/275 (19%), Positives = 117/275 (42%), Gaps = 17/275 (6%)

Query: 66  QNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEF 125
              ++   + +P++V+ +   DP +  ++      L +   +  I+ V+K GVVP+ V+ 
Sbjct: 224 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL-TDGPNERIEMVVKKGVVPQLVKL 282

Query: 126 LGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALG 185
           L       +   A  A+ N+ +GT E T+ VI+ GA+ +F  LL++   +++++A W + 
Sbjct: 283 L-GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341

Query: 186 NVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVK-- 243
           N+          V++ G + P L  +   +     + A W ++N+  G      EQ+   
Sbjct: 342 NITAGRQDQIQQVVNHGLV-PFLVGVLSKADFKTQKEAAWAITNYTSGGTV---EQIVYL 397

Query: 244 ---PALPILQRLIHLNDEEVLTDACWALSYL------SDGPNDKIQAVIEAGVCPRLVEL 294
                +  L  L+   D +++     A+S +                + E G   ++  L
Sbjct: 398 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL 457

Query: 295 LMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGV 329
             H + +V   +L  +    + ++ + Q V+    
Sbjct: 458 QRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT 492

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 53.1 bits (127), Expect = 7e-08
 Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 1/88 (1%)

Query: 280 QAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQT-QFVIDNGVLPCLYQLLT 338
                      +V+ +   +    + A +    +++ +       +I  G++P     L 
Sbjct: 51  NQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG 110

Query: 339 QNHKKSIKKEACWTISNITAGNRAQIQV 366
           +     I+ E+ W ++NI +G   Q + 
Sbjct: 111 KTDCSPIQFESAWALTNIASGTSEQTKA 138

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  397 bits (1021), Expect = e-137
 Identities = 182/303 (60%), Positives = 220/303 (72%), Gaps = 3/303 (0%)

Query: 65  SQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVI-KAGVVPRFV 123
           +   +         M++ ++S+ P  QL AT +FRKLLS E +PPIDEVI   GVV RFV
Sbjct: 11  NNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFV 70

Query: 124 EFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWA 183
           EFL R +   LQFE+AW LTN+ASG S  TR+VI+ GAVP+F++LLSS  +DV+EQAVWA
Sbjct: 71  EFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWA 130

Query: 184 LGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQV 242
           LGN+AGDS  CRD VL    L PLL   ++ ++L+M RNA W LSN CRGK P P F +V
Sbjct: 131 LGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV 190

Query: 243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATV 302
            P L +L  L+ ++D +VL DACWALSYLSDGPNDKIQAVI+AGVC RLVELLMH    V
Sbjct: 191 SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKV 250

Query: 303 LIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRA 362
           + PALR VGNIVTGDD QTQ +++   L  L  LL  + K+SIKKEACWTISNITAGNRA
Sbjct: 251 VSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRA 309

Query: 363 QIQ 365
           QIQ
Sbjct: 310 QIQ 312

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  183 bits (467), Expect = 5e-54
 Identities = 81/295 (27%), Positives = 131/295 (44%), Gaps = 7/295 (2%)

Query: 76  IPSMVQGVW-SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           +   V+ +   E+  LQ E+      + +   S     VI+AG VP F+E L       +
Sbjct: 66  VARFVEFLKRKENCTLQFESAWVLTNI-ASGNSLQTRIVIQAGAVPIFIELLSSEF-EDV 123

Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSD-DVREQAVWALGNVAGDSPS 193
           Q +A WAL N+A  ++     V++   +P  +QL S  +   +   AVWAL N+      
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183

Query: 194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVK-PALPILQRL 252
             +    S  L  +L+ L   S   +L +A W LS    G        +       L  L
Sbjct: 184 PPEFAKVSPCL-NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVEL 242

Query: 253 IHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312
           +  ND +V++ A  A+  +  G + + Q ++       L+ LL  P  ++   A  T+ N
Sbjct: 243 LMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302

Query: 313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVH 367
           I  G+ AQ Q VID  + P L  +L Q  +   +KEA W I+N T+G  A+   +
Sbjct: 303 ITAGNRAQIQTVIDANIFPALISIL-QTAEFRTRKEAAWAITNATSGGSAEQIKY 356

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  174 bits (442), Expect = 2e-50
 Identities = 65/287 (22%), Positives = 118/287 (41%), Gaps = 13/287 (4%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           +P  ++ + SE   +Q +A      + + + +   D V+   ++P  ++   + +   + 
Sbjct: 109 VPIFIELLSSEFEDVQEQAVWALGNI-AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMT 167

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
             A WAL+N+  G S           + +   LL     DV   A WAL  ++       
Sbjct: 168 RNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKI 227

Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVK-----PALPILQ 250
             V+ +G     L +L  H+   ++  A   + N   G       Q +      AL  L 
Sbjct: 228 QAVIDAGVC-RRLVELLMHNDYKVVSPALRAVGNIVTGDD----IQTQVILNCSALQSLL 282

Query: 251 RLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310
            L+    E +  +ACW +S ++ G   +IQ VI+A + P L+ +L          A   +
Sbjct: 283 HLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAI 342

Query: 311 GNIVTGDDA-QTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI 356
            N  +G  A Q +++++ G +  L  LLT    K I + A   + NI
Sbjct: 343 TNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSK-IVQVALNGLENI 388

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  150 bits (379), Expect = 3e-41
 Identities = 51/256 (19%), Positives = 102/256 (39%), Gaps = 22/256 (8%)

Query: 63  DASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRF 122
            +      K    +  +   ++  D  +  +A      L S   +  I  VI AGV  R 
Sbjct: 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYL-SDGPNDKIQAVIDAGVCRRL 239

Query: 123 VEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVW 182
           VE L  H+  ++   A  A+ N+ +G    T+V++   A+   + LLSS  + ++++A W
Sbjct: 240 VELL-MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACW 298

Query: 183 ALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV 242
            + N+   + +    V+ +     L++ L + ++    + A W ++N   G      EQ+
Sbjct: 299 TISNITAGNRAQIQTVIDANIFPALISIL-QTAEFRTRKEAAWAITNATSGGSA---EQI 354

Query: 243 K-----PALPILQRLIHLNDEEVLTDACWALSYL-----------SDGPNDKIQAVIEAG 286
           K       +  L  L+ + D +++  A   L  +             G N     + EA 
Sbjct: 355 KYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAY 414

Query: 287 VCPRLVELLMHPSATV 302
              ++  L  H +  +
Sbjct: 415 GLDKIEFLQSHENQEI 430

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  133 bits (336), Expect = 4e-35
 Identities = 40/226 (17%), Positives = 85/226 (37%), Gaps = 5/226 (2%)

Query: 144 NVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA--GDSPSCRDLVLSS 201
                   +  +          ++++ S S + +  A      +     +P   +++ + 
Sbjct: 4   GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63

Query: 202 GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP-ALPILQRLIHLNDEEV 260
           G +   +  L      ++   + W L+N   G        ++  A+PI   L+    E+V
Sbjct: 64  GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV 123

Query: 261 LTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM-HPSATVLIPALRTVGNIVTGDDA 319
              A WAL  ++         V++  + P L++L       T+   A+  + N+  G   
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183

Query: 320 QTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
             +F   +  L  L  LL  +    +  +ACW +S ++ G   +IQ
Sbjct: 184 PPEFAKVSPCLNVLSWLLFVSDTD-VLADACWALSYLSDGPNDKIQ 228

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  275 bits (705), Expect = 7e-92
 Identities = 87/241 (36%), Positives = 133/241 (55%), Gaps = 4/241 (1%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           +P M Q + S+D   QL AT +F ++LS + +  I  VI AG +P  V+ L      Q+ 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLL-SSPNEQIL 71

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
            EA WAL+N+ASG +E  + VI+ GA+P  VQLLSS ++ + ++A+WAL N+A       
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVK-PALPILQRLIH 254
             V+ +GAL P L QL       +L+ A W LSN   G        +   ALP L +L+ 
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 190

Query: 255 LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314
             +E++L +A WALS ++ G N++ QAV EAG   +L +L  H +  +   A   +  + 
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

Query: 315 T 315
           +
Sbjct: 251 S 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  156 bits (396), Expect = 1e-45
 Identities = 48/121 (39%), Positives = 69/121 (57%), Gaps = 1/121 (0%)

Query: 245 ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLI 304
            LP + + ++ +D +    A    S +    N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQI 364
            AL  + NI +G + Q Q VID G LP L QLL  +  + I +EA W +SNI +G   QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 365 Q 365
           Q
Sbjct: 132 Q 132

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  128 bits (325), Expect = 3e-35
 Identities = 64/206 (31%), Positives = 92/206 (44%), Gaps = 43/206 (20%)

Query: 160 GAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSM 219
             +P   Q L+S     +  A      +  D       V+ +GAL               
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL--------------- 56

Query: 220 LRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKI 279
                                      P L +L+   +E++L +A WALS ++ G N++I
Sbjct: 57  ---------------------------PALVQLLSSPNEQILQEALWALSNIASGGNEQI 89

Query: 280 QAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQ 339
           QAVI+AG  P LV+LL  P+  +L  AL  + NI +G + Q Q VID G LP L QLL  
Sbjct: 90  QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-S 148

Query: 340 NHKKSIKKEACWTISNITAGNRAQIQ 365
           +  + I +EA W +SNI +G   QIQ
Sbjct: 149 SPNEQILQEALWALSNIASGGNEQIQ 174

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  276 bits (708), Expect = 1e-87
 Identities = 52/309 (16%), Positives = 114/309 (36%), Gaps = 6/309 (1%)

Query: 63  DASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRF 122
           +AS++AI +  + + ++V+ + + +       T      LS  R      + K+G +P  
Sbjct: 45  EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPAL 103

Query: 123 VEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVW 182
           V+ L    +  + F A   L N+          V   G +   V LL+  +         
Sbjct: 104 VKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 162

Query: 183 ALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV 242
            L  +A  +   + ++L+SG    L+  +  ++   +L   +  L          P    
Sbjct: 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 222

Query: 243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATV 302
              +  L   +    + ++ +  W L  LSD    +       G+   LV+LL      V
Sbjct: 223 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINV 279

Query: 303 LIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-KKSIKKEACWTISNITAGNR 361
           +  A   + N+   +      V   G +  L + + +   ++ I + A   + ++T+ ++
Sbjct: 280 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339

Query: 362 AQIQVHDSF 370
                 ++ 
Sbjct: 340 EAEMAQNAV 348

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  194 bits (494), Expect = 2e-56
 Identities = 67/293 (22%), Positives = 113/293 (38%), Gaps = 10/293 (3%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           IP + + +  ED  +  +A     +L   E S     +    +V   V  +   +  +  
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
              A  L N+ S   E    + + G +P  V++L S  D V   A+  L N+       +
Sbjct: 75  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133

Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP-ALPILQRLI- 253
             V  +G L  ++A LN+ +    L   T  L     G   +    +       L  ++ 
Sbjct: 134 MAVRLAGGLQKMVALLNKTNV-KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192

Query: 254 HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313
               E++L      L  LS   ++K  A++EAG    L   L  PS  ++   L T+ N+
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251

Query: 314 VTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
               DA T+     G+L  L QLL  +    +   A   +SN+T  N     +
Sbjct: 252 ---SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMM 300

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  189 bits (481), Expect = 2e-54
 Identities = 38/258 (14%), Positives = 91/258 (35%), Gaps = 6/258 (2%)

Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
            D  +    +P   + L   +   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 7   DDAELATRAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 170 SSGSD-DVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLS 228
            + +D +        L N++         +  SG +  L+  L      S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLH 123

Query: 229 NFCRGKPPTPFEQVKP-ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGV 287
           N    +            L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKK 347
              LV ++   +   L+     V  +++   +    +++ G +  L   L  +  + + +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQ 242

Query: 348 EACWTISNITAGNRAQIQ 365
              WT+ N++     Q  
Sbjct: 243 NCLWTLRNLSDAATKQEG 260

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  177 bits (451), Expect = 2e-50
 Identities = 57/307 (18%), Positives = 111/307 (36%), Gaps = 14/307 (4%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           IP++V+ + S   ++   A T    LL  +    +  V  AG + + V  L      +  
Sbjct: 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALL-NKTNVKFL 157

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSD-DVREQAVWALGNVAGDSPSC 194
                 L  +A G  E   +++  G     V ++ + +   +       L  ++    S 
Sbjct: 158 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN 216

Query: 195 RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIH 254
           +  ++ +G +   L          +++N  WTL N       T  E ++  L  L +L+ 
Sbjct: 217 KPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDA--ATKQEGMEGLLGTLVQLLG 273

Query: 255 LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM--HPSATVLIPALRTVGN 312
            +D  V+T A   LS L+         V + G    LV  ++       +  PA+  + +
Sbjct: 274 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333

Query: 313 IVTGDD---AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG--NRAQIQVH 367
           + +           V  +  LP + +LL       + K     I N+     N A ++  
Sbjct: 334 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQ 393

Query: 368 DSFHLFV 374
            +    V
Sbjct: 394 GAIPRLV 400

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  156 bits (396), Expect = 1e-42
 Identities = 30/219 (13%), Positives = 73/219 (33%)

Query: 151 EHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQ 210
                 +   A+P   +LL+     V  +A   +  ++    S   ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 211 LNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSY 270
           +   + +   R    TL N    +           +P L +++    + VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 271 LSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVL 330
           L         AV  AG   ++V LL   +   L      +  +  G+      ++ +G  
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 331 PCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDS 369
             L  ++     + +       +  ++  +  +  + ++
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 223

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  149 bits (378), Expect = 4e-40
 Identities = 51/296 (17%), Positives = 104/296 (35%), Gaps = 13/296 (4%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           +  MV  +   +       T   + L +         ++ +G     V  +  +   +L 
Sbjct: 142 LQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIILASGGPQALVNIMRTYTYEKLL 200

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
           +  +  L  ++   S +   ++E G +      L+  S  + +  +W L N++  +    
Sbjct: 201 WTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA---T 256

Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP-ALPILQRLIH 254
                 G L   L QL     ++++  A   LSN             +   +  L R + 
Sbjct: 257 KQEGMEGLL-GTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 315

Query: 255 LND--EEVLTDACWALSYLSDGPNDK---IQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
                E++   A  AL +L+    +      AV      P +V+LL  PS   LI A   
Sbjct: 316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375

Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +   +    A    + + G +P L QLL + H+   ++      +        +++
Sbjct: 376 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD-TQRRTSMGGTQQQFVEGVRME 430

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  131 bits (331), Expect = 8e-34
 Identities = 54/316 (17%), Positives = 101/316 (31%), Gaps = 29/316 (9%)

Query: 63  DASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRF 122
           DA+      +   + ++VQ + S+D  +   A      L +         V + G +   
Sbjct: 253 DAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEAL 310

Query: 123 VEFLGR-HDMPQLQFEAAWALTNVASGTSEHTRV---VIEHGAVPMFVQLLSSGSDDVRE 178
           V  + R  D   +   A  AL ++ S   E       V  H  +P+ V+LL   S     
Sbjct: 311 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 370

Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
           +A   L       P+    +   GA+ P L QL   +     R  +   +     +    
Sbjct: 371 KATVGLIRNLALCPANHAPLREQGAI-PRLVQLLVRAHQDTQRRTSMGGTQQQFVEG--- 426

Query: 239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP 298
                           +  EE++     AL  L+   +++   +      P  V+LL  P
Sbjct: 427 ----------------VRMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQLLYSP 469

Query: 299 SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358
              +   A   +  +    +A        G    L +LL  +  + +   A   +  ++ 
Sbjct: 470 IENIQRVAAGVLCELAQDKEAAEAIE-AEGATAPLTELL-HSRNEGVATYAAAVLFRMSE 527

Query: 359 GNRAQIQVHDSFHLFV 374
                 +   S  L  
Sbjct: 528 DKPQDYKKRLSVELTS 543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  106 bits (267), Expect = 3e-25
 Identities = 41/283 (14%), Positives = 77/283 (27%), Gaps = 29/283 (10%)

Query: 85  SEDPALQLEATTQFRKLLSI--ERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 142
            +   +   A    R L S   E     + V     +P  V+ L       L  +A   L
Sbjct: 318 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI-KATVGL 376

Query: 143 TNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSG 202
               +    +   + E GA+P  VQLL     D + +                       
Sbjct: 377 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ---------------- 420

Query: 203 ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLT 262
                   +       ++   T  L    R        +    +P+  +L++   E +  
Sbjct: 421 -----QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQR 475

Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
            A   L  L+       +A+   G    L ELL   +  V   A   +  +        +
Sbjct: 476 VAAGVLCELAQDKEAA-EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYK 534

Query: 323 FVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
             +   +       L +    +  + A   +     G     +
Sbjct: 535 KRLSVELTS----SLFRTEPMAWNETADLGLDIGAQGEPLGYR 573

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 78.4 bits (193), Expect = 5e-16
 Identities = 31/173 (17%), Positives = 49/173 (28%), Gaps = 8/173 (4%)

Query: 63  DASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRF 122
            A Q+   +                  +    T     L     +     +     +P F
Sbjct: 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLF 462

Query: 123 VEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVW 182
           V+ L    +  +Q  AA  L  +A    E    +   GA     +LL S ++ V   A  
Sbjct: 463 VQLL-YSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAA 520

Query: 183 ALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 235
            L  ++ D P      LS      L               A   L    +G+P
Sbjct: 521 VLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWN----ETADLGLDIGAQGEP 569

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 11/91 (12%), Positives = 32/91 (35%)

Query: 276 NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQ 335
           N +  A +     P L +LL      V+  A   V  +   + ++   +    ++  + +
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
            +   +     +    T+ N++      + +
Sbjct: 64  TMQNTNDVETARCTAGTLHNLSHHREGLLAI 94

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  273 bits (700), Expect = 2e-87
 Identities = 52/299 (17%), Positives = 112/299 (37%), Gaps = 6/299 (2%)

Query: 63  DASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRF 122
           +AS++AI +  + + ++V+ + + +       T      LS  R   +  + K+G +P  
Sbjct: 48  EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL-AIFKSGGIPAL 106

Query: 123 VEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVW 182
           V+ L    +  + F A   L N+          V   G +   V LL+  +         
Sbjct: 107 VKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 165

Query: 183 ALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV 242
            L  +A  +   + ++L+SG    L+  +  ++   +L   +  L          P    
Sbjct: 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 225

Query: 243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATV 302
              +  L   +    + ++ +  W L  LSD    +       G+   LV+LL      V
Sbjct: 226 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINV 282

Query: 303 LIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-KKSIKKEACWTISNITAGN 360
           +  A   + N+   +      V   G +  L + + +   ++ I + A   + ++T+ +
Sbjct: 283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  207 bits (529), Expect = 3e-62
 Identities = 67/293 (22%), Positives = 115/293 (39%), Gaps = 10/293 (3%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           IP + + +  ED  +  +A     +L   E S     +    +V   V  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
              A  L N+ S   E    + + G +P  V++L S  D V   A+  L N+       +
Sbjct: 78  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP-ALPILQRLI- 253
             V  +G L  ++A LN+ + +  L   T  L     G   +    +       L  ++ 
Sbjct: 137 MAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 254 HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313
               E++L      L  LS   ++K  A++EAG    L   L  PS  ++   L T+ N+
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 314 VTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
               DA T+     G+L  L QLL  +   ++   A   +SN+T  N     +
Sbjct: 255 ---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMM 303

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  171 bits (435), Expect = 1e-48
 Identities = 38/259 (14%), Positives = 92/259 (35%), Gaps = 6/259 (2%)

Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
            D  +    +P   + L   +   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 10  DDAELATRAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 170 SSGSD-DVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLS 228
            + +D +        L N++         +  SG +  L+  L      S+L  A  TL 
Sbjct: 69  QNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLH 126

Query: 229 NFCRGKPPTPFEQVKP-ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGV 287
           N    +            L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKK 347
              LV ++   +   L+     V  +++   +    +++ G +  L   L  +  + + +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQ 245

Query: 348 EACWTISNITAGNRAQIQV 366
              WT+ N++     Q  +
Sbjct: 246 NCLWTLRNLSDAATKQEGM 264

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  164 bits (416), Expect = 6e-46
 Identities = 32/229 (13%), Positives = 78/229 (34%), Gaps = 3/229 (1%)

Query: 141 ALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLS 200
           A+ N+ +         +   A+P   +LL+     V  +A   +  ++    S   ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 201 SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEV 260
              +  ++  +   + +   R    TL N    +           +P L +++    + V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 261 LTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ 320
           L  A   L  L         AV  AG   ++V LL   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 321 TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDS 369
              ++ +G    L  ++     + +       +  ++  +  +  + ++
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 226

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  150 bits (380), Expect = 6e-41
 Identities = 53/320 (16%), Positives = 104/320 (32%), Gaps = 32/320 (10%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
             ++V  + +      L  T++  K+LS+  S     +++AG +      L      +L 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLV 244

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
               W L N++      T+     G +   VQLL S   +V   A   L N+  ++   +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 196 DLVLSSGALMPLLAQL-NEHSKLSMLRNATWTLSNFCRGKPPTPFEQVK----PALPILQ 250
            +V   G +  L+  +     +  +   A   L +           Q        LP++ 
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 251 RLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310
           +L+H      L  A   L             + E G  PRLV+LL+              
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 311 GNIVTGDDAQTQFVIDN---------------------GVLPCLYQLLTQNHKKSIKKEA 349
                 +  + + +++                        +P   QLL  +  ++I++ A
Sbjct: 422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENIQRVA 480

Query: 350 CWTISNITAGNRAQIQVHDS 369
              +  +     A   +   
Sbjct: 481 AGVLCELAQDKEAAEAIEAE 500

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  149 bits (377), Expect = 2e-40
 Identities = 51/296 (17%), Positives = 104/296 (35%), Gaps = 13/296 (4%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           +  MV  +   +       T   + L +         ++ +G     V  +  +   +L 
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIILASGGPQALVNIMRTYTYEKLL 203

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
           +  +  L  ++   S +   ++E G +      L+  S  + +  +W L N++  +    
Sbjct: 204 WTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA---T 259

Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP-ALPILQRLIH 254
                 G L   L QL     ++++  A   LSN             +   +  L R + 
Sbjct: 260 KQEGMEGLL-GTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318

Query: 255 LN--DEEVLTDACWALSYLSDGPNDK---IQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
                E++   A  AL +L+    +      AV      P +V+LL  PS   LI A   
Sbjct: 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378

Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +   +    A    + + G +P L QLL + H+   ++      +        +++
Sbjct: 379 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD-TQRRTSMGGTQQQFVEGVRME 433

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  126 bits (317), Expect = 3e-32
 Identities = 49/286 (17%), Positives = 95/286 (33%), Gaps = 28/286 (9%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR-HDMPQL 134
           + ++VQ + S+D  +   A      L +         V + G +   V  + R  D   +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 135 QFEAAWALTNVASGTSEHTRV---VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS 191
              A  AL ++ S   E       V  H  +P+ V+LL   S     +A   L       
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 192 PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQR 251
           P+    +   GA+  L+  L   +     R  +   +     +                 
Sbjct: 387 PANHAPLREQGAIPRLVQLLV-RAHQDTQRRTSMGGTQQQFVEG---------------- 429

Query: 252 LIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG 311
              +  EE++     AL  L+   +++I  +      P  V+LL  P   +   A   + 
Sbjct: 430 ---VRMEEIVEGCTGALHILARDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 312 NIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT 357
            +   D    + +   G    L +LL   ++  +   A   +  ++
Sbjct: 486 ELAQ-DKEAAEAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 68.3 bits (167), Expect = 1e-12
 Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 4/126 (3%)

Query: 63  DASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRF 122
            A Q+   +                  +    T     L     +     +     +P F
Sbjct: 408 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLF 465

Query: 123 VEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVW 182
           V+ L    +  +Q  AA  L  +A    E    +   GA     +LL S ++ V   A  
Sbjct: 466 VQLL-YSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAA 523

Query: 183 ALGNVA 188
            L  ++
Sbjct: 524 VLFRMS 529

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  238 bits (607), Expect = 9e-72
 Identities = 52/299 (17%), Positives = 111/299 (37%), Gaps = 6/299 (2%)

Query: 63  DASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRF 122
           +AS++AI +  + + ++V+ + + +       T+     LS  R      + K+G +P  
Sbjct: 181 EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL-LAIFKSGGIPAL 239

Query: 123 VEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVW 182
           V  L    +  + F A   L N+          V   G +   V LL+  +         
Sbjct: 240 VNML-GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 298

Query: 183 ALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV 242
            L  +A  +   + ++L+SG    L+  +  ++   +L   +  L          P    
Sbjct: 299 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 358

Query: 243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATV 302
              +  L   +    + ++ +  W L  LSD    +       G+   LV+LL      V
Sbjct: 359 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINV 415

Query: 303 LIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-KKSIKKEACWTISNITAGN 360
           +  A   + N+   +      V   G +  L + + +   ++ I + A   + ++T+ +
Sbjct: 416 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 474

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  213 bits (544), Expect = 9e-63
 Identities = 42/305 (13%), Positives = 103/305 (33%), Gaps = 8/305 (2%)

Query: 74  ESIPSMVQGVWSEDPALQL--EATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDM 131
                  Q   +    +Q   E +   +  +    +   D  +    +P   + L   + 
Sbjct: 105 GMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLL-NDED 163

Query: 132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSD-DVREQAVWALGNVAGD 190
             +  +AA  +  ++   +    ++     V   V+ + + +D +        L N++  
Sbjct: 164 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS-H 222

Query: 191 SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP-ALPIL 249
                  +  SG + P L  +      S+L +A  TL N    +            L  +
Sbjct: 223 HREGLLAIFKSGGI-PALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM 281

Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
             L++  + + L      L  L+ G  +    ++ +G    LV ++   +   L+     
Sbjct: 282 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 341

Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDS 369
           V  +++   +    +++ G +  L   L  +  + + +   WT+ N++     Q  +   
Sbjct: 342 VLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQEGMEGL 400

Query: 370 FHLFV 374
               V
Sbjct: 401 LGTLV 405

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  211 bits (539), Expect = 4e-62
 Identities = 68/306 (22%), Positives = 117/306 (38%), Gaps = 10/306 (3%)

Query: 62  LDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPR 121
           L   Q+  E    +IP + + +  ED  +  +A     +L   E S     +    +V  
Sbjct: 138 LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSA 196

Query: 122 FVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAV 181
            V  +   +  +     +  L N++    E    + + G +P  V +L S  D V   A+
Sbjct: 197 IVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAI 255

Query: 182 WALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQ 241
             L N+       +  V  +G L  ++A LN  + +  L   T  L     G   +    
Sbjct: 256 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLII 314

Query: 242 VKP-ALPILQRLI-HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS 299
           +       L  ++     E++L      L  LS   ++K  A++EAG    L   L  PS
Sbjct: 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPS 373

Query: 300 ATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG 359
             ++   L T+ N+    DA T+     G+L  L QLL  +   ++   A   +SN+T  
Sbjct: 374 QRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCN 429

Query: 360 NRAQIQ 365
           N     
Sbjct: 430 NYKNKM 435

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  194 bits (493), Expect = 1e-55
 Identities = 43/305 (14%), Positives = 92/305 (30%), Gaps = 8/305 (2%)

Query: 63  DASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRF 122
           D     + +  +            D   Q   T   R      R+    E +  G+    
Sbjct: 56  DVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIPS 110

Query: 123 VEFLGRHDMP-QLQFEAAWALTNVASGTSEH-TRVVIEHGAVPMFVQLLSSGSDDVREQA 180
            +F   H    Q   E +  L +       +     +   A+P   +LL+     V  +A
Sbjct: 111 TQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKA 170

Query: 181 VWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE 240
              +  ++    S   ++ S   +  ++  +   + +   R  + TL N    +      
Sbjct: 171 AVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAI 230

Query: 241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300
                +P L  ++    + VL  A   L  L         AV  AG   ++V LL   + 
Sbjct: 231 FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 290

Query: 301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
             L      +  +  G+      ++ +G    L  ++ + +           +  + +  
Sbjct: 291 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM-RTYTYEKLLWTTSRVLKVLSVC 349

Query: 361 RAQIQ 365
            +   
Sbjct: 350 SSNKP 354

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  170 bits (432), Expect = 4e-47
 Identities = 53/320 (16%), Positives = 103/320 (32%), Gaps = 32/320 (10%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
             ++V  + +      L  T++  K+LS+  S     +++AG +      L      +L 
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLV 377

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
               W L N++      T+     G +   VQLL S   +V   A   L N+  ++   +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434

Query: 196 DLVLSSGALMPLLAQL-NEHSKLSMLRNATWTLSNFCRGKPPTPFEQVK----PALPILQ 250
            +V   G +  L+  +     +  +   A   L +           Q        LP++ 
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494

Query: 251 RLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310
           +L+H      L  A   L             + E G  PRLV+LL+              
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554

Query: 311 GNIVTGDDAQTQFVI---------------------DNGVLPCLYQLLTQNHKKSIKKEA 349
                 +  + + ++                         +P   QLL  +  ++I++ A
Sbjct: 555 TQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLL-YSPIENIQRVA 613

Query: 350 CWTISNITAGNRAQIQVHDS 369
              +  +     A   +   
Sbjct: 614 AGVLCELAQDKEAAEAIEAE 633

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  133 bits (335), Expect = 3e-34
 Identities = 54/318 (16%), Positives = 102/318 (32%), Gaps = 28/318 (8%)

Query: 62  LDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPR 121
           L  +    E     + ++VQ + S+D  +   A      L +         V + G +  
Sbjct: 387 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEA 445

Query: 122 FVEFLGR-HDMPQLQFEAAWALTNVASGTSEH---TRVVIEHGAVPMFVQLLSSGSDDVR 177
            V  + R  D   +   A  AL ++ S   +       V  H  +P+ V+LL   S    
Sbjct: 446 LVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505

Query: 178 EQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT 237
            +A   L       P+    +   GA+ P L QL   +     R  +   +         
Sbjct: 506 IKATVGLIRNLALCPANHAPLREQGAI-PRLVQLLVRAHQDTQRRTSMGGTQ-------- 556

Query: 238 PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH 297
                       Q +  +  EE++     AL  L+   +++   +      P  V+LL  
Sbjct: 557 -----------QQFVEGVRMEEIVEACTGALHILARDIHNR-IVIRGLNTIPLFVQLLYS 604

Query: 298 PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT 357
           P   +   A   +  +   D    + +   G    L +LL  +  + +   A   +  ++
Sbjct: 605 PIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMS 662

Query: 358 AGNRAQIQVHDSFHLFVL 375
                  +   S  L   
Sbjct: 663 EDKPQDYKKRLSVELTSS 680

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 73.9 bits (181), Expect = 2e-14
 Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 113 VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG 172
           +     +P FV+ L    +  +Q  AA  L  +A    E    +   GA     +LL S 
Sbjct: 589 IRGLNTIPLFVQLL-YSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSR 646

Query: 173 SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLL----AQLNEHSKLSM 219
           ++ V   A   L  ++ D P      LS      L        NE   L +
Sbjct: 647 NEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGL 697

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 65.8 bits (160), Expect = 8e-12
 Identities = 32/210 (15%), Positives = 61/210 (29%), Gaps = 19/210 (9%)

Query: 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSML 220
             P      +   DDV  Q ++        S +   +    G      AQ          
Sbjct: 42  TAPSLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQ---------- 91

Query: 221 RNATWTLSNFCRGKPPTPFEQVKPALPI-LQRLIHLNDEEVLTDACWALSYLSDGPNDKI 279
           R                P  Q   A P  +QRL      ++L  A   L       N + 
Sbjct: 92  RVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRL--AEPSQMLKHAVVNLI------NYQD 143

Query: 280 QAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQ 339
            A +     P L +LL      V+  A   V  +   + ++   +    ++  + + +  
Sbjct: 144 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 203

Query: 340 NHKKSIKKEACWTISNITAGNRAQIQVHDS 369
            +     +    T+ N++      + +  S
Sbjct: 204 TNDVETARCTSGTLHNLSHHREGLLAIFKS 233

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  197 bits (502), Expect = 3e-60
 Identities = 61/349 (17%), Positives = 114/349 (32%), Gaps = 30/349 (8%)

Query: 38  KNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQ 97
            +    ++L       LL+  +   +      E     +      + +        A   
Sbjct: 2   GHHHHHHMLH------LLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCV 55

Query: 98  FRKLLSIERSPPIDEVIKAGVVPRFVEFL----------GRHDMPQLQFEAAWALTNVAS 147
             KL   E       + + G +    E L            H    L+  A  ALTN+  
Sbjct: 56  LMKLSFDEEHR--HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 113

Query: 148 GTSEHTRVVI-EHGAVPMFVQLLSSGSDDVREQAVWALGNVA-GDSPSCRDLVLSSGALM 205
           G   +   +    G +   V  L S S+D+++     L N++     + +  +   G++ 
Sbjct: 114 GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVK 173

Query: 206 PLLAQLNEHSKLSMLRNATWTLSNFCRGKP--PTPFEQVKPALPILQRLI----HLNDEE 259
            L+    E  K S L++    L N              V  AL  L   +      N   
Sbjct: 174 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 233

Query: 260 VLTDACWALSYLSD---GPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG 316
           ++      L  +S       D  Q + E      L++ L   S T++  A  T+ N+   
Sbjct: 234 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 293

Query: 317 DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           +    + + D G +  L  L+  +  K I   +   + N+ A   A+ +
Sbjct: 294 NPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRPAKYK 341

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  108 bits (272), Expect = 7e-27
 Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 20/228 (8%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           + ++V  + SE   LQ    +  R L           + + G V   +E           
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 136 FEAAWALTNVASGTSE-HTRVVIEHGAVPMFVQLLS----SGSDDVREQAVWALGNVAG- 189
                AL N+++  +E    +    GA+   V  L+    + +  + E     L NV+  
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 190 --DSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP--- 244
              +   R ++  +  L   L Q  +   L+++ NA  TL N     P    +  +    
Sbjct: 249 IATNEDHRQILRENNCL-QTLLQHLKSHSLTIVSNACGTLWNLSARNP----KDQEALWD 303

Query: 245 --ALPILQRLIHLNDEEVLTDACWALSYLSDG-PND-KIQAVIEAGVC 288
             A+ +L+ LIH   + +   +  AL  L    P   K   ++  G  
Sbjct: 304 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSS 351

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 65.3 bits (159), Expect = 6e-12
 Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 26/167 (15%)

Query: 217 LSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN 276
           L  +R    T   +     P         +   +  +    E  +  A   L  LS    
Sbjct: 13  LEQIRAYCETCWEWQEAHEP--------GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE 64

Query: 277 DKIQAVIEAGVCPRLVELL-----------MHPSATVLIPALRTVGNIVTGDDAQTQFVI 325
            +  A+ E G    + ELL            H S T+   A   + N+  GD A    + 
Sbjct: 65  HR-HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 326 -DNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG----NRAQIQVH 367
              G +  L   L ++  + +++     + N++      ++  ++  
Sbjct: 124 SMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREV 169

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  192 bits (489), Expect = 3e-57
 Identities = 70/371 (18%), Positives = 126/371 (33%), Gaps = 27/371 (7%)

Query: 18  TGVDADEARRRREDNLVEIRKNKREDNLLKKRREGL-LLQPQQQGLDASQNAIEKKLESI 76
               + EAR R    L  I  ++ +D   ++    L LL+  +   +      E     +
Sbjct: 91  NSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM 150

Query: 77  PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFL---------- 126
                 + +        A     KL   E       + + G +    E L          
Sbjct: 151 DQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLT 208

Query: 127 GRHDMPQLQFEAAWALTNVASGTSEHTRVVI-EHGAVPMFVQLLSSGSDDVREQAVWALG 185
             H    L+  A  ALTN+  G   +   +    G +   V  L S S+D+++     L 
Sbjct: 209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 268

Query: 186 NVAGD-SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNAT---WTLSNFCRGKPPTPFEQ 241
           N++     + +  +   G++  L+    E  K S L++     W LS  C          
Sbjct: 269 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA-DICA 327

Query: 242 VKPALPILQRLI----HLNDEEVLTDACWALSYLSD---GPNDKIQAVIEAGVCPRLVEL 294
           V  AL  L   +      N   ++      L  +S       D  Q + E      L++ 
Sbjct: 328 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387

Query: 295 LMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTIS 354
           L   S T++  A  T+ N+   +    + + D G +  L  L+  +  K I   +   + 
Sbjct: 388 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALR 446

Query: 355 NITAGNRAQIQ 365
           N+ A   A+ +
Sbjct: 447 NLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 95.8 bits (238), Expect = 6e-22
 Identities = 52/279 (18%), Positives = 97/279 (34%), Gaps = 53/279 (18%)

Query: 115 KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL----- 169
           K  +V   +  LG HD    + + +  L  + S + +    + + G +P+ +QLL     
Sbjct: 30  KVEMVYSLLSMLGTHD----KDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDK 84

Query: 170 -------SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRN 222
                  S GS + R +A  AL N+    P  +        L  LL Q+  +        
Sbjct: 85  DSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVL-HLLEQIRAYC------E 137

Query: 223 ATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAV 282
             W              E  +P +   +  +    E  +  A   L  LS     +  A+
Sbjct: 138 TCWEWQ-----------EAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAM 185

Query: 283 IEAGVCPRLVELL-----------MHPSATVLIPALRTVGNIVTGDDAQTQFVIDN-GVL 330
            E G    + ELL            H S T+   A   + N+  GD A    +    G +
Sbjct: 186 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245

Query: 331 PCLYQLLTQNHKKSIKKEACWTISNITAG----NRAQIQ 365
             L   L ++  + +++     + N++      ++  ++
Sbjct: 246 RALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLR 283

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  177 bits (452), Expect = 2e-54
 Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 11/210 (5%)

Query: 111 DEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS 170
                   +P+ V+ L      Q    A   L+ +ASG +E  + VI+ GA+P  VQLLS
Sbjct: 6   HHHHHGSELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 171 SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF 230
           S ++ + ++A+WAL N+A         V+ +GAL  L+  L       +L+ A W LSN 
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNI 123

Query: 231 CRGKPPTPFEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA 285
             G      EQ++      ALP L +L+   +E++L +A WALS ++ G N++ QAV EA
Sbjct: 124 ASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 179

Query: 286 GVCPRLVELLMHPSATVLIPALRTVGNIVT 315
           G   +L +L  H +  +   A   +  + +
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  172 bits (439), Expect = 2e-52
 Identities = 51/121 (42%), Positives = 73/121 (60%), Gaps = 1/121 (0%)

Query: 245 ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLI 304
            LP + + ++  D++ L  A   LS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQI 364
            AL  + NI +G + Q Q VID G LP L QLL  +  + I +EA W +SNI +G   QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 365 Q 365
           Q
Sbjct: 132 Q 132

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  133 bits (336), Expect = 2e-37
 Identities = 64/210 (30%), Positives = 93/210 (44%), Gaps = 43/210 (20%)

Query: 156 VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS 215
                 +P  VQ L+S      + A+  L  +A         V+ +GAL  L+  L+   
Sbjct: 8   HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-- 65

Query: 216 KLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP 275
                                                    +E++L +A WALS ++ G 
Sbjct: 66  ----------------------------------------PNEQILQEALWALSNIASGG 85

Query: 276 NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQ 335
           N++IQAVI+AG  P LV+LL  P+  +L  AL  + NI +G + Q Q VID G LP L Q
Sbjct: 86  NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145

Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           LL  +  + I +EA W +SNI +G   Q Q
Sbjct: 146 LL-SSPNEQILQEALWALSNIASGGNEQKQ 174

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  176 bits (448), Expect = 3e-51
 Identities = 39/262 (14%), Positives = 82/262 (31%), Gaps = 18/262 (6%)

Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
           +P+ V++L      + Q   A+ + +         + V + G +   V LL S + +V++
Sbjct: 4   IPKAVQYL-SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
            A  AL N+   S + +        +   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 239 FEQVKPALPILQRLI----------------HLNDEEVLTDACWALSYLSDGPNDKIQAV 282
            E +  ALP+L   +                 + D EV  +A   L  LS     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 283 IEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHK 342
             +G+   L+  + +  A            +    +   +   +        +   +N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 343 KSIKKEACWTISNITAGNRAQI 364
                  C++  +    N    
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYD 263

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 86.0 bits (212), Expect = 1e-18
 Identities = 44/348 (12%), Positives = 97/348 (27%), Gaps = 52/348 (14%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           I  +V  + S +  +Q  A    R  L    +    E  +   +   V  L R    ++Q
Sbjct: 46  ICKLVDLLRSPNQNVQQAAAGALR-NLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL----------------SSGSDDVREQ 179
            +    L N++S   +  +  +   A+P+    +                     +V   
Sbjct: 105 KQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162

Query: 180 AVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSM------LRNATWTLSNFCRG 233
           A   L N++  + + R  + +   L+  L    ++   +       + N    L N    
Sbjct: 163 ATGCLRNLS-SADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR 221

Query: 234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPR--- 290
                  +V      L+        E  +  C++        N+    + E    P+   
Sbjct: 222 ----LDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG 277

Query: 291 ----------LVELLMHPS------ATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLY 334
                      + L+          A        T    +          +    LP + 
Sbjct: 278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIA 337

Query: 335 QLLTQNHKKSIKKEACWTISNIT--AGNRAQIQVHDSFHLFVLHEDFS 380
           +LL   +   + +     +SN++        +       +  L    +
Sbjct: 338 RLLQSGNSD-VVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHT 384

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 85.3 bits (210), Expect = 2e-18
 Identities = 45/321 (14%), Positives = 95/321 (29%), Gaps = 45/321 (14%)

Query: 85  SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFL---------------GRH 129
           + +  +Q + T     L ++  +  + E + A  +P   + +                  
Sbjct: 98  TGNAEIQKQLT---GLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREV 154

Query: 130 DMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVR------EQAVWA 183
             P++ F A   L N++S  +    +    G +   +  + +     R      E  +  
Sbjct: 155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214

Query: 184 LGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS------KLSMLRNATWTLSNFCRGKPP- 236
           L N++    +               A   + S      K   + N  +          P 
Sbjct: 215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPK 274

Query: 237 --TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDK-----IQAVIEAGVCP 289
                         L  +     +  L     AL  L+               ++    P
Sbjct: 275 GSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLP 334

Query: 290 RLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKE- 348
           ++  LL   ++ V+      + N+          V+ N V P + +LLT +   +   E 
Sbjct: 335 QIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSED 392

Query: 349 ----ACWTISNITAGNRAQIQ 365
               AC+T+ N+ A      +
Sbjct: 393 ILSSACYTVRNLMASQPQLAK 413

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 72.2 bits (176), Expect = 5e-14
 Identities = 20/117 (17%), Positives = 42/117 (35%)

Query: 244 PALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVL 303
             +P   + +   DE+      + + +         Q V + G   +LV+LL  P+  V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 304 IPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
             A   + N+V               +     LL +     I+K+    + N+++ +
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 69.1 bits (168), Expect = 5e-13
 Identities = 24/195 (12%), Positives = 58/195 (29%), Gaps = 43/195 (22%)

Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR-----VVIEHGAVPM 164
              +  +  +  ++  +G+          A AL N+ +     +      + ++   +P 
Sbjct: 276 SGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQ 335

Query: 165 FVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNAT 224
             +LL SG+ DV       L N++      R +   +     +   L  H+  +      
Sbjct: 336 IARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG--NQVFPEVTRLLTSHTGNTS----- 388

Query: 225 WTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIE 284
                                          N E++L+ AC+ +  L        +    
Sbjct: 389 -------------------------------NSEDILSSACYTVRNLMASQPQLAKQYFS 417

Query: 285 AGVCPRLVELLMHPS 299
           + +   ++ L    +
Sbjct: 418 SSMLNNIINLCRSSA 432

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 64.5 bits (156), Expect = 2e-11
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 14/173 (8%)

Query: 74  ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDE-----VIKAGVVPRFVEFLGR 128
           ++I + +  +        LEA     + L+  +            +K   +P+    L +
Sbjct: 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL-Q 341

Query: 129 HDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG------SDDVREQAVW 182
                +    A  L+N++         V+ +   P   +LL+S       S+D+   A +
Sbjct: 342 SGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACY 399

Query: 183 ALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 235
            + N+    P       SS  L  ++      +       A   LS+    K 
Sbjct: 400 TVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 59.8 bits (144), Expect = 5e-10
 Identities = 23/185 (12%), Positives = 51/185 (27%), Gaps = 21/185 (11%)

Query: 202 GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVK-PALPILQRLIHLNDEEV 260
           G  +P   Q              + + + C        +  +   +  L  L+   ++ V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 261 LTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH-PSATVLIPALRTVGNIVTGDDA 319
              A  AL  L                    V LL    +A +       + N+ + D+ 
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 320 QTQFVIDNGVLPCLYQLL---------------TQNHKKSIKKEACWTISNITAG--NRA 362
           +    +    LP L   +                +     +   A   + N+++    R 
Sbjct: 121 KE--ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 363 QIQVH 367
            ++ +
Sbjct: 179 TMRNY 183

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 57.1 bits (137), Expect = 4e-09
 Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 9/136 (6%)

Query: 63  DASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRF 122
                 I  K + +P + + + S +  +     +    L ++ R P +  V+   V P  
Sbjct: 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASL---LSNMSRHPLLHRVMGNQVFPEV 376

Query: 123 VEFLGRHDMP-----QLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL-SSGSDDV 176
              L  H         +   A + + N+ +   +  +       +   + L  SS S   
Sbjct: 377 TRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKA 436

Query: 177 REQAVWALGNVAGDSP 192
            E A   L ++     
Sbjct: 437 AEAARLLLSDMWSSKE 452

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  167 bits (425), Expect = 2e-49
 Identities = 33/192 (17%), Positives = 77/192 (40%), Gaps = 3/192 (1%)

Query: 160 GAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSM 219
           G   +  + L +G+  +R +A   +G  + +  + ++ VL  GAL  LL  L+  +  ++
Sbjct: 82  GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTV 141

Query: 220 LRNATWTLSNFCRGKPPTPFEQVK-PALPILQRLIHLNDEEVLTDACWALSYLSDGPNDK 278
              A + +S   R +     + ++     +L R +    +++   + + L  L  G  + 
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH 201

Query: 279 IQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLT 338
              +   G+  +LV L+    +      L  + ++VT      +   +  +   L +LL 
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEELLR 259

Query: 339 QNHKKSIKKEAC 350
              +   + E  
Sbjct: 260 HRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 91.6 bits (227), Expect = 4e-21
 Identities = 22/181 (12%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 85  SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTN 144
           +    L+  A            +   ++V+  G + + +  L R     ++ +A +A++ 
Sbjct: 93  AGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151

Query: 145 VASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGAL 204
           +           +      + ++ +      ++ ++ + L N+    P  +  + S G +
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211

Query: 205 MPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDA 264
              L  L          +    L +     P    E  +P L + + L H        + 
Sbjct: 212 -QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEE 270

Query: 265 C 265
            
Sbjct: 271 Y 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 71.2 bits (174), Expect = 5e-14
 Identities = 22/123 (17%), Positives = 48/123 (39%)

Query: 243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATV 302
           +P  P         D++    A   L+ L +  ++       +G+   +   L   +A +
Sbjct: 39  QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98

Query: 303 LIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRA 362
              A + +G       A  + V+  G L  L +LL ++   +++ +A + IS +     A
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158

Query: 363 QIQ 365
            + 
Sbjct: 159 GLL 161

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  158 bits (399), Expect = 2e-43
 Identities = 55/345 (15%), Positives = 104/345 (30%), Gaps = 62/345 (17%)

Query: 73  LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMP 132
           +       Q  W+     +  +      L S+ +  P     +   +P  +  L    + 
Sbjct: 7   IGEEVPSDQYYWAPLAQHERGSL---ASLDSLRKGGPPPPNWRQPELPEVIAML-GFRLD 62

Query: 133 QLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA-GDS 191
            ++  AA  L ++     +    V +   +P+ V LL     +V   A  AL N++ G  
Sbjct: 63  AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD 122

Query: 192 PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQR 251
              +  + +   +  L+  L +   + +    T TL N          E V  AL  L  
Sbjct: 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM-EIVDHALHALTD 181

Query: 252 LI------------------HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVE 293
            +                  H+  E VLT+    L  +S   ++  + + E   C  LV+
Sbjct: 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE---CDGLVD 238

Query: 294 LLMH-----------------------------------PSATVLIPALRTVGNIVTGDD 318
            L+                                     +      A     N  T   
Sbjct: 239 ALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPA 298

Query: 319 AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQ 363
              + +    V+     LL ++   +I + +   I N+ AG    
Sbjct: 299 RGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY 343

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  111 bits (279), Expect = 4e-27
 Identities = 60/378 (15%), Positives = 117/378 (30%), Gaps = 68/378 (17%)

Query: 55  LQPQQQGLDASQNAIEKKLE--------SIPSMVQGVWSEDPALQLEATTQFRKLLSIER 106
           L   ++G  AS +++ K            +P ++  +     A++  A    + L     
Sbjct: 21  LAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHL-CYRN 79

Query: 107 SPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV-VIEHGAVPMF 165
                +V K   +P  V  L  H   ++   A  AL N++ G  +  ++ +     VP  
Sbjct: 80  DKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138

Query: 166 VQLLSSGSD-DVREQAVWALGNVAGDSPSCR-----------DLVLSSGALMPLLAQLNE 213
           V+LL    D D+ E     L N++                  D V+   +        + 
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDC 198

Query: 214 HSK----LSMLRNATWTLSNFCRGKPP--TPFEQVKPALPILQRLIHL------NDEEVL 261
             +     S+L N    L N    +        +    +  L  ++        +D +++
Sbjct: 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258

Query: 262 TDACWALSYLSD-------------------------GPNDKIQAVIEAGVCPRLVELLM 296
            +    L  LS                           P    + + +  V    + LL 
Sbjct: 259 ENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318

Query: 297 HPSA-TVLIPALRTVGNIVTGDDAQT----QFVIDNGVLPCLYQLLTQNHKKSIKKEACW 351
                 +L  +   + N+  G           +     L  +  LLT  H++ + K A  
Sbjct: 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHER-VVKAASG 377

Query: 352 TISNITAG--NRAQIQVH 367
            + N+     N+  I  H
Sbjct: 378 ALRNLAVDARNKELIGKH 395

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 85.4 bits (210), Expect = 3e-18
 Identities = 35/255 (13%), Positives = 83/255 (32%), Gaps = 42/255 (16%)

Query: 54  LLQPQQQGLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPP--ID 111
           ++Q +    D+    +E  +  + ++   V  E P  +           +   SP    +
Sbjct: 243 IVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYE 302

Query: 112 EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASG---TSEHTRVVI-EHGAVPMFVQ 167
            + +  VV  ++  L     P +   +A A+ N+ +G      + R  + +  A+     
Sbjct: 303 LLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362

Query: 168 LLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTL 227
           LL++  + V + A  AL N+A D+ +    ++   A+  L+  L                
Sbjct: 363 LLTNEHERVVKAASGALRNLAVDARNKE--LIGKHAIPNLVKNLPGGQ------------ 408

Query: 228 SNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGV 287
                                 Q       E+ +      ++ +     +  + + E   
Sbjct: 409 ----------------------QNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG 446

Query: 288 CPRLVELLMHPSATV 302
             +LV +    + + 
Sbjct: 447 IEKLVLINKSGNRSE 461

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 80.4 bits (197), Expect = 1e-16
 Identities = 43/274 (15%), Positives = 84/274 (30%), Gaps = 48/274 (17%)

Query: 129 HDMPQLQFEAAWALTNVASGTSEHTRVVIEH-GAVPMFVQLLSSGSDD------------ 175
            +   +    A  L NV+S  SE  R + E  G V   + ++ +                
Sbjct: 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCV 262

Query: 176 -------------------VREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSK 216
                               +E A     N         +L+     +   ++ L E   
Sbjct: 263 CLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKT 322

Query: 217 LSMLRNATWTLSNFCRGKPPTPFEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYL 271
            ++L  +   + N C G+               AL  +  L+    E V+  A  AL  L
Sbjct: 323 PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNL 382

Query: 272 SDGPNDKIQAVIEAGVCPRLVELL--------MHPSATVLIPALRTVGNIVTGDDAQTQF 323
           +    +K   +I     P LV+ L         + S   +I  L T+  ++  +    + 
Sbjct: 383 AVDARNK--ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKK 440

Query: 324 VIDNGVLPCLYQLLTQNHKKS-IKKEACWTISNI 356
           + +   +  L  +    ++     + A   +  I
Sbjct: 441 LRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 79.6 bits (195), Expect = 2e-16
 Identities = 48/352 (13%), Positives = 94/352 (26%), Gaps = 66/352 (18%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           IP +V  +      + L A    + +           +     VP  V  L +     L 
Sbjct: 92  IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL------------------SSGSDDVR 177
                 L N++S   +  ++ I   A+      +                      + V 
Sbjct: 152 EVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 178 EQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLS------MLRNATWTLSNFC 231
                 L NV+ +    R  +     L+  L  + +           ++ N    L N  
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 232 R---------------------------GKPPTPFEQVKPALPILQRLIHLNDEEVLTDA 264
                                        +      Q +     +  L       +L  +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 265 CWALSYLSDG----PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ 320
             A+  L  G          A+ +      + +LL +    V+  A   + N+    DA+
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV--DAR 387

Query: 321 TQFVIDNGVLPCLYQLLTQNHKKSIKK-------EACWTISNITAGNRAQIQ 365
            + +I    +P L + L    + S              TI+ + A N    +
Sbjct: 388 NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAK 439

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 51.1 bits (121), Expect = 4e-07
 Identities = 19/126 (15%), Positives = 39/126 (30%), Gaps = 12/126 (9%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFL-------GR 128
           + ++   + +E   +   A+   R L          E+I    +P  V+ L         
Sbjct: 357 LSAIADLLTNEHERVVKAASGALRNLA---VDARNKELIGKHAIPNLVKNLPGGQQNSSW 413

Query: 129 HDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQ--AVWALGN 186
           +            +  V +   E  + + E   +   V +  SG+   +E   A   L  
Sbjct: 414 NFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQT 473

Query: 187 VAGDSP 192
           + G   
Sbjct: 474 IWGYKE 479

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  138 bits (350), Expect = 3e-39
 Identities = 42/214 (19%), Positives = 69/214 (32%), Gaps = 20/214 (9%)

Query: 119 VPRFVEFLGR-HDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVR 177
           + R V  L   H +P     AA  + +     SE  + V +   +   +QLL   ++DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 178 EQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT 237
                AL N+  +    +  V     +  LL  L +   L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 238 PFEQVKPALPILQRLI----------------HLNDEEVLTDACWALSYLSDGPNDKIQA 281
               +  AL  L   I                 L D ++  +    L  +S    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 282 VIEA-GVCPRLVELLMHPSATVLIPALRTVGNIV 314
           +    G+   LV  +    A       +   N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 69.6 bits (170), Expect = 7e-14
 Identities = 20/123 (16%), Positives = 50/123 (40%), Gaps = 5/123 (4%)

Query: 249 LQRLIHL-----NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVL 303
           L+R + +          ++ A   + +     ++  + V +     +L++LL   +  V 
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 304 IPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQ 363
                 + N+V  D+     V +   +P L Q+L Q      KK+    + N+++ ++ +
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 364 IQV 366
             +
Sbjct: 130 NLM 132

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 60.3 bits (146), Expect = 9e-11
 Identities = 28/221 (12%), Positives = 53/221 (23%), Gaps = 60/221 (27%)

Query: 162 VPMFVQLLSSGS--DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSM 219
           +   V +L +          A   + +        R  V     ++ LL  L        
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV------ 63

Query: 220 LRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKI 279
                                                +E+V    C AL  L    ND  
Sbjct: 64  ------------------------------------QNEDVQRAVCGALRNLVFEDNDNK 87

Query: 280 QAVIEAGVCPRLVELLMH-PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLL- 337
             V E    PRL+++L               + N+ + D  +   +I   +L     ++ 
Sbjct: 88  LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL-MITEALLTLTENIII 146

Query: 338 -------------TQNHKKSIKKEACWTISNITAGNRAQIQ 365
                               I       + N+++      +
Sbjct: 147 PFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRK 187

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 57.7 bits (139), Expect = 8e-10
 Identities = 29/206 (14%), Positives = 60/206 (29%), Gaps = 41/206 (19%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
           I  ++Q +  ++  +Q       R  L  E +    EV +   VPR ++ L +    + +
Sbjct: 54  ILKLLQLLKVQNEDVQRAVCGALR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETK 112

Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
            +    L N++S   +  + ++   A+    + +                          
Sbjct: 113 KQITGLLWNLSSN--DKLKNLMITEALLTLTENI-------------------------- 144

Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE--QVKPALPILQRLI 253
            ++  SG       + N      +  N T  L N             +    +  L   +
Sbjct: 145 -IIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYV 203

Query: 254 HLNDEEVLTDA-------C--WALSY 270
                +   D        C    LSY
Sbjct: 204 RGTIADYQPDDKATENCVCILHNLSY 229

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  136 bits (344), Expect = 2e-35
 Identities = 44/317 (13%), Positives = 97/317 (30%), Gaps = 41/317 (12%)

Query: 85  SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTN 144
            +D  ++  A       L+++       +     +   ++   R       +       N
Sbjct: 390 GKDKDIRRWAADGLA-YLTLDAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVVTTFVN 447

Query: 145 VASGTSEHT--------------------------------RVVIEHGAVPMFVQLLSSG 172
           + +   +                                   V+   G       L  + 
Sbjct: 448 LCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE 507

Query: 173 SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232
           S + +E     L  V G     R  V+  G +  LL    E ++    R+AT  L+    
Sbjct: 508 SHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGK-RHATQALARIGI 565

Query: 233 GKPPTPFEQVKPALPILQRLIHL----NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVC 288
              P      + +L +++ L++L           ++  AL+ L+       Q +I+    
Sbjct: 566 TINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGV 625

Query: 289 PRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKE 348
            ++   LM     +   A + + N+V  +D    F  +N  +  L  L     ++     
Sbjct: 626 SKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEE-TATA 684

Query: 349 ACWTISNITAGNRAQIQ 365
               ++ IT+ +    +
Sbjct: 685 CAGALAIITSVSVKCCE 701

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  121 bits (303), Expect = 4e-30
 Identities = 45/330 (13%), Positives = 103/330 (31%), Gaps = 15/330 (4%)

Query: 32  NLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESI------PSMVQGVWS 85
           NL    + +     + +  +       ++      + I K++  +       ++     +
Sbjct: 447 NLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT 506

Query: 86  EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNV 145
           E    Q         +  ++      +V++ G V   +         + +  A  AL  +
Sbjct: 507 ESHNSQELIARVLNAVCGLKEL--RGKVVQEGGVKALLRMA-LEGTEKGKRHATQALARI 563

Query: 146 ASGTSEHTRVV--IEHGAVPMFVQLLSSGSDDV-REQAVWALGNVAGDSPSCRDLVLSSG 202
               +             +   + LL      +   +++ AL N+A  + S R  ++   
Sbjct: 564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ 623

Query: 203 ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP-TPFEQVKPALPILQRLIHLNDEEVL 261
             +  +        L + R A   L N    +     FE     +  L  L    DEE  
Sbjct: 624 G-VSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETA 682

Query: 262 TDACWALSYLSDGPNDKIQAVIE-AGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ 320
           T    AL+ ++       + ++  A     L  L+ +PS  V    +  + N++   +  
Sbjct: 683 TACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI 742

Query: 321 TQFVIDNGVLPCLYQLLTQNHKKSIKKEAC 350
            + + +  ++  L  L         K    
Sbjct: 743 AKKLFETDIMELLSGLGQLPDDTRAKAREV 772

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  116 bits (291), Expect = 2e-28
 Identities = 35/260 (13%), Positives = 73/260 (28%), Gaps = 7/260 (2%)

Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
           I  +   G+         + +    Q   A  L  V  G  E    V++ G V   +++ 
Sbjct: 488 ITVLANEGITTALCALA-KTESHNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMA 545

Query: 170 SSGSDDVREQAVWALGN--VAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTL 227
             G++  +  A  AL    +  +         S   + PLL  L +         +   L
Sbjct: 546 LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMAL 605

Query: 228 SNFCRGKPPTPFEQVK-PALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAG 286
           +N            +K   +  ++  +  +   +   A   L  L    +          
Sbjct: 606 TNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNND 665

Query: 287 VCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN-GVLPCLYQLLTQNHKKSI 345
               L  L               +  I +      + ++     L  L+ L+  N   ++
Sbjct: 666 RVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI-ANPSPAV 724

Query: 346 KKEACWTISNITAGNRAQIQ 365
           +      I N+        +
Sbjct: 725 QHRGIVIILNMINAGEEIAK 744

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  114 bits (286), Expect = 8e-28
 Identities = 43/264 (16%), Positives = 78/264 (29%), Gaps = 13/264 (4%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLL-SIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           + ++++         +  AT    ++  +I             V+   +  L +      
Sbjct: 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE 597

Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
            FE+  ALTN+AS      + +I+   V      L      +   A   L N+   S   
Sbjct: 598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-SEDV 656

Query: 195 RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPA--LPILQRL 252
             +   +   +  LA L E             L+           + +  A  L IL  L
Sbjct: 657 IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716

Query: 253 IHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS---------ATVL 303
           I      V       +  + +   +  + + E  +   L  L   P          AT  
Sbjct: 717 IANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQC 776

Query: 304 IPALRTVGNIVTGDDAQTQFVIDN 327
           + A      I   D+A+   V   
Sbjct: 777 LAAAERYRIIERSDNAEIPDVFAE 800

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  112 bits (280), Expect = 5e-27
 Identities = 33/317 (10%), Positives = 88/317 (27%), Gaps = 48/317 (15%)

Query: 91  QLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS 150
              A+    ++                 +  +++        + +     A+T + +G  
Sbjct: 221 STIASVCLARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNGPL 279

Query: 151 EH-TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLA 209
           +   +VV   G + M + + ++  +  +  A   L   +         +   G  + +L 
Sbjct: 280 DVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK-DKAKALCEQG--VDILK 336

Query: 210 QLNEHSKLSMLRNATWTLSNFC-----RGKPPTPFEQVKPALPILQRLIHLN---DEEVL 261
           +L       +   A   L                 +     L    R   +    D+++ 
Sbjct: 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIR 396

Query: 262 TDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQT 321
             A   L+YL+     K + + +      L++L    + + L   + T  N+    + Q 
Sbjct: 397 RWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE 456

Query: 322 --------------------------------QFVIDNGVLPCLYQLLTQNHKKSIKKEA 349
                                             + + G+   L  L       + ++  
Sbjct: 457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES-HNSQELI 515

Query: 350 CWTISNITAG--NRAQI 364
              ++ +      R ++
Sbjct: 516 ARVLNAVCGLKELRGKV 532

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 85.5 bits (211), Expect = 2e-19
 Identities = 44/241 (18%), Positives = 90/241 (37%), Gaps = 27/241 (11%)

Query: 74  ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
             +  +++ +  +   +   A      ++ I ++    ++ +  ++ +    L + +   
Sbjct: 32  SVLKKLIELLDDDLWTVVKNA---ISIIMVIAKTRE--DLYEP-MLKKLFSLLKKSEAIP 85

Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS 193
           L  E A A   +A    E  + +I     P+       G +  +    +AL  +A  +P 
Sbjct: 86  LTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTKINVSYALEEIAKANPM 140

Query: 194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI 253
               ++     M +L+  N   KL+ L        NF        F+ V P LP +  L+
Sbjct: 141 LMASIVR--DFMSMLSSKNREDKLTAL--------NFIEAMGENSFKYVNPFLPRIINLL 190

Query: 254 HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313
           H  DE V   A  AL +L+   +   + VI      + +E L   S+ V       +  +
Sbjct: 191 HDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRL 244

Query: 314 V 314
           +
Sbjct: 245 L 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 64.7 bits (157), Expect = 4e-12
 Identities = 30/209 (14%), Positives = 73/209 (34%), Gaps = 20/209 (9%)

Query: 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVR 177
           V+ + +E L   D+  +   A   +  +A    +    +++     +F  L  S +  + 
Sbjct: 33  VLKKLIELLD-DDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 178 EQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT 237
           ++   A G +A + P          +++P+L             N ++ L    +  P  
Sbjct: 88  QEIAKAFGQMAKEKPELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139

Query: 238 PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH 297
               +   +     ++   + E    A   +  + +     +   +     PR++ LL  
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHD 192

Query: 298 PSATVLIPALRTVGNIVTGDDAQTQFVID 326
               V   A+  + ++ T +D   + VI 
Sbjct: 193 GDEIVRASAVEALVHLATLNDKLRKVVIK 221

>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44

 Score = 60.9 bits (148), Expect = 1e-12
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 12 RKKGYK-TGVDADEARRRREDNLVEIRKNKREDNLLKKRR 50
          R   +K  G D+ E RRRR +  VE+RK K++D +LK+R 
Sbjct: 3  RLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRN 42

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 58.7 bits (142), Expect = 6e-10
 Identities = 29/205 (14%), Positives = 52/205 (25%), Gaps = 33/205 (16%)

Query: 115 KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSD 174
           K          L        +  +A  L                  AV + ++  S  + 
Sbjct: 21  KKLNDDELFRLL-DDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNY 68

Query: 175 DVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234
             R+   + LG +      C D V +      L           +   A  + +  C+  
Sbjct: 69  IRRDIGAFILGQI-KICKKCEDNVFN-----ILNNMALNDKSACVRATAIESTAQRCKKN 122

Query: 235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVEL 294
           P          +   Q         V     +A+S ++D               P L+ L
Sbjct: 123 PIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINL 167

Query: 295 LMHPSATVLIPALRTVGNIVTGDDA 319
           L  P+  V   A   +      +  
Sbjct: 168 LKDPNGDVRNWAAFAININKYDNSD 192

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 34/281 (12%), Positives = 75/281 (26%), Gaps = 56/281 (19%)

Query: 74  ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
           +++   ++    ++   +        ++   ++           V               
Sbjct: 54  DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-------NVFNILNNMALNDKSAC 106

Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS 193
           ++  A  +              +     V          S +VR    +A+         
Sbjct: 107 VRATAIEST-----AQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISV------- 154

Query: 194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI 253
                ++  A +PLL  L +     +   A + ++                       ++
Sbjct: 155 -----INDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS--------DIRDCFVEML 201

Query: 254 HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313
              +EEV  +A   LSY  D      + V+       L + L   +  V    +   G +
Sbjct: 202 QDKNEEVRIEAIIGLSYRKD------KRVLSV-----LCDELKKNT--VYDDIIEAAGEL 248

Query: 314 VTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTIS 354
             GD           +LP L  +L +     I   A   + 
Sbjct: 249 --GDKT---------LLPVLDTMLYKFDDNEIITSAIDKLK 278

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 21/226 (9%)

Query: 118 VVPRFVEFLGR---HDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSD 174
           ++   +EF+ +    D  + +  A  A  ++  G  +  R    H A+P  + L++  S 
Sbjct: 366 ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSL 425

Query: 175 DVREQAVWALGNVAGDSPSCRDLVLSSGALMP-LLAQLNEHSKLSMLRNATWTLSNFCRG 233
            V+E   W +G +A       D       ++   L  L +H K++   N +WT+ N    
Sbjct: 426 QVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQ 483

Query: 234 KPPTPFEQVKPAL-PILQRLIH-----LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGV 287
                   +      ++  LI       N+      A  AL+ +       ++   +   
Sbjct: 484 LAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTM-------VEYATDT-- 534

Query: 288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCL 333
                  +       L   +    N +T +DAQ+   + + +L  L
Sbjct: 535 VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVL 580

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 56.6 bits (135), Expect = 7e-09
 Identities = 32/228 (14%), Positives = 88/228 (38%), Gaps = 9/228 (3%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLS----IERSPPIDEVIKAGVVPRFVEFLGRHDM 131
           + ++   + S+   L+  ++   + ++           +   +   +  R    + + + 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS 191
             +Q EA   + ++ S       V      +   +  L+S    VR++ + ALG++    
Sbjct: 148 VSVQLEALDIMADMLSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV--- 203

Query: 192 PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQR 251
            SC ++V     +  LL++L+++  +S  R     ++   R       E ++  +P++ +
Sbjct: 204 MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 262

Query: 252 LIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS 299
             +++D+E+      A          ++   +   +   L  L   P+
Sbjct: 263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN 310

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 38/285 (13%), Positives = 98/285 (34%), Gaps = 31/285 (10%)

Query: 76   IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
            +  +   V+S+  AL  + +           +    +   A V     +         ++
Sbjct: 776  LRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIR 835

Query: 136  FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
              A  +L  V        ++ ++     + ++  SS S++V+  A +ALG+++  +    
Sbjct: 836  LLALLSLGEVGHHIDLSGQLELKS----VILEAFSSPSEEVKSAASYALGSISVGNLP-- 889

Query: 196  DLVLSSGALMPLLAQL--NEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI 253
                     +P + Q   ++  +  +L ++   + +        P+  V+    +L +  
Sbjct: 890  -------EYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPY--VENIWALLLKHC 940

Query: 254  HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313
               +E         L         K+  +    + PRL   L+  S+      +  V   
Sbjct: 941  ECAEEGTRNVVAECLG--------KLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFT 992

Query: 314  VTGDDAQTQFVIDNGVLPCLYQLLT--QNHKKSIKKEACWTISNI 356
            ++         ID  +  C+   L   ++   ++++ A  T ++ 
Sbjct: 993  ISDHPQ----PIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSA 1033

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 45/286 (15%), Positives = 91/286 (31%), Gaps = 34/286 (11%)

Query: 56  QPQQQGLD--------------ASQNAIEKKLESIPS----------MVQGVWSEDPALQ 91
           +P +QGL                 Q  +++KLE +            ++  + SED   +
Sbjct: 6   KPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTR 65

Query: 92  LEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151
             +    +  +           +   +    +  +G    P ++      +T +AS    
Sbjct: 66  SLSGLILKNNVK-AHFQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGEL 123

Query: 152 HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD---LVLSSGALMPLL 208
                     +P    LL S   +  E A  AL  +  DS    D   L      ++P  
Sbjct: 124 QNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKF 179

Query: 209 AQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWAL 268
            Q  +HS   +  +A   ++ F   +       +   +  L  L    + EV  + C AL
Sbjct: 180 LQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRAL 239

Query: 269 SYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314
             L +   D++   +   +   +++        V + A      + 
Sbjct: 240 VMLLEVRMDRLLPHMHN-IVEYMLQRTQDQDENVALEACEFWLTLA 284

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 30/184 (16%), Positives = 54/184 (29%), Gaps = 12/184 (6%)

Query: 118 VVPRFVEFLGR---HDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSD 174
           ++P  +  L     H    ++      L  +A G  +     +    +P  +Q LS    
Sbjct: 356 LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLIQCLSDKKA 414

Query: 175 DVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234
            VR    W L   A    S          +  LL ++ + +K  +   A    +      
Sbjct: 415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFATLEEEA 473

Query: 235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVEL 294
                  +   L  L         + L     A+  L         +V      P  +++
Sbjct: 474 CTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTL-------ADSVGHHLNKPEYIQM 526

Query: 295 LMHP 298
           LM P
Sbjct: 527 LMPP 530

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 36/250 (14%), Positives = 72/250 (28%), Gaps = 57/250 (22%)

Query: 74  ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
           E +   ++ +  +   ++  A     K+                 V   ++ L   D   
Sbjct: 19  EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AW 65

Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS 193
           ++  AA AL  +               AV   ++ L      VR+ A  ALG +  +   
Sbjct: 66  VRRAAADALGQIGDER-----------AVEPLIKALKDEDGWVRQSAAVALGQIGDER-- 112

Query: 194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI 253
                    A+ PL+  L +     +   A + L               + A+  L + +
Sbjct: 113 ---------AVEPLIKAL-KDEDWFVRIAAAFALGEI----------GDERAVEPLIKAL 152

Query: 254 HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313
              D  V   A  AL  +        + V  A     + +L    +      A+  +   
Sbjct: 153 KDEDGWVRQSAADALGEIGG------ERVRAA-----MEKLAETGTGFARKVAVNYLETH 201

Query: 314 VTGDDAQTQF 323
            + +      
Sbjct: 202 KSFNHHHHHH 211

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 44/245 (17%), Positives = 78/245 (31%), Gaps = 57/245 (23%)

Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
           V  +++ L + D   ++  AA+AL  +               AV   ++ L      VR 
Sbjct: 21  VEMYIKNL-QDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRR 68

Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
            A  ALG +  +            A+ PL+  L +     + ++A   L           
Sbjct: 69  AAADALGQIGDER-----------AVEPLIKAL-KDEDGWVRQSAAVALGQI-------- 108

Query: 239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP 298
               + A+  L + +   D  V   A +AL  + D      +AV        L++ L   
Sbjct: 109 --GDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155

Query: 299 SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358
              V   A   +G I  G +          V   + +L         +K A   +    +
Sbjct: 156 DGWVRQSAADALGEI--GGER---------VRAAMEKLAETGT-GFARKVAVNYLETHKS 203

Query: 359 GNRAQ 363
            N   
Sbjct: 204 FNHHH 208

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 53.9 bits (129), Expect = 5e-08
 Identities = 49/234 (20%), Positives = 79/234 (33%), Gaps = 20/234 (8%)

Query: 108 PPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQ 167
           P +   +KA +   F   L   D P ++  AA  L   A          ++   +PMF  
Sbjct: 155 PRVSSAVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210

Query: 168 LLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTL 227
           L S   D VR  AV A  N+A               +MP L Q  E     +        
Sbjct: 211 LASDEQDSVRLLAVEACVNIA----QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266

Query: 228 SNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG-PNDKIQAVIEAG 286
           +   +   P   +     +P  Q L+   + EV   A   +    +    D  + VI + 
Sbjct: 267 TELQKAVGPEITKTD--LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324

Query: 287 VCPRLVELLMHPSATV---LIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLL 337
           + P + EL+   +  V   L   +  +  I+  D+          +LP     L
Sbjct: 325 ILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH------LLPLFLAQL 372

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 40/303 (13%), Positives = 93/303 (30%), Gaps = 40/303 (13%)

Query: 74  ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
           +    + + V  E     L     F+ L+    +           V  F E L       
Sbjct: 264 DKFTELQKAVGPEITKTDLV--PAFQNLMKDCEAEVRAAASHK--VKEFCENLSADCREN 319

Query: 134 LQFEAAW-ALTNVASGTSEHTR-----------------VVIEHGAVPMFVQLLSSGSDD 175
           +        +  + S  ++H +                   IEH  +P+F+  L     +
Sbjct: 320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH-LLPLFLAQLKDECPE 378

Query: 176 VREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 235
           VR   +  L  V         +   S +L+P + +L E +K  +       +        
Sbjct: 379 VRLNIISNLDCVN----EVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG 434

Query: 236 PTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSD--GPNDKIQAVIEAGVCPRLVE 293
              F++      +    +  +   +   A   L  L +  G       +I     P+++ 
Sbjct: 435 VEFFDEK--LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATII-----PKVLA 487

Query: 294 LLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI 353
           +   P+    +  L  +  +    +   Q +    +LP + ++   +   +++     ++
Sbjct: 488 MSGDPNYLHRMTTLFCINVLS---EVCGQDITTKHMLPTVLRMA-GDPVANVRFNVAKSL 543

Query: 354 SNI 356
             I
Sbjct: 544 QKI 546

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 71/497 (14%), Positives = 134/497 (26%), Gaps = 169/497 (34%)

Query: 10  EVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRRE--------GLLLQPQQQG 61
            V +  +    D  +     +D    I   +  D+++  +            LL  Q++ 
Sbjct: 23  SVFEDAFVDNFDCKDV----QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 62  LDASQNAIEKK-----LESI------PSMVQGVWSE--DPALQLEATTQ-FRKLLSIERS 107
           +      + +      +  I      PSM+  ++ E  D    L    Q F K  ++ R 
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR---LYNDNQVFAKY-NVSRL 134

Query: 108 PPIDEVIKAGVVPRFVEFLGRHDMP-------------------QLQFEAAWALTNVASG 148
            P  ++ +A +  R  + +    +                    ++ F+  W    +   
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW----LNLK 190

Query: 149 TSEHTRVVIE------HGAVPMFVQLLSSGS----------------------------- 173
                  V+E      +   P +       S                             
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 174 DDVREQAVWALGNVAGDSPSCRDLVLSSGA---------------LMPLLAQLNEHSKLS 218
            +V+    W   N+     SC+ L+ +                  L      L      S
Sbjct: 251 LNVQNAKAWNAFNL-----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 219 MLRNATWTLSNFCRGKPPT--PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN 276
           +L    +          P   P  +V    P    +I                 + DG  
Sbjct: 306 LL--LKYL------DCRPQDLP-REVLTTNPRRLSII------------AES--IRDGLA 342

Query: 277 ----------DKIQAVIEAGVC--------PRLVELLMHPSATVLIPALRTVGNIVTGDD 318
                     DK+  +IE+ +              L + P  +  IP    +  I     
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-SAHIPT-ILLSLIWFDVI 400

Query: 319 AQTQFVIDNGVLPCLYQLLTQNHKK------SIKKEACWTISNITAGNRAQI------QV 366
                V+ N +    Y L+ +  K+      SI  E    + N  A +R+ +      + 
Sbjct: 401 KSDVMVVVNKL--HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 367 HDSFHLFVLHEDFSLYF 383
            DS  L   + D   YF
Sbjct: 459 FDSDDLIPPYLD--QYF 473

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 30/219 (13%), Positives = 60/219 (27%), Gaps = 53/219 (24%)

Query: 74  ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIK------------------ 115
           E +   ++ +  +   ++  A     K+       P+ + +K                  
Sbjct: 14  EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73

Query: 116 -AGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSD 174
               V   ++ L   D   ++  AA AL  +               AV   ++ L     
Sbjct: 74  DERAVEPLIKALKDED-GWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDW 121

Query: 175 DVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234
            VR  A +ALG +  +            A+ PL+  L       + ++A   L       
Sbjct: 122 FVRIAAAFALGEIGDER-----------AVEPLIKALK-DEDGWVRQSAADALGEI---- 165

Query: 235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSD 273
                   +     +++L           A   L     
Sbjct: 166 ------GGERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 38/201 (18%), Positives = 68/201 (33%), Gaps = 47/201 (23%)

Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
           V  +++ L + D   ++  AA+AL  +               AV   ++ L      VR 
Sbjct: 16  VEMYIKNL-QDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRR 63

Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
            A  ALG +  +            A+ PL+  L +     + ++A   L           
Sbjct: 64  AAADALGQIGDER-----------AVEPLIKAL-KDEDGWVRQSAAVALGQI-------- 103

Query: 239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP 298
               + A+  L + +   D  V   A +AL  + D      +  +E      L++ L   
Sbjct: 104 --GDERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEP-----LIKALKDE 150

Query: 299 SATVLIPALRTVGNIVTGDDA 319
              V   A   +G I  G + 
Sbjct: 151 DGWVRQSAADALGEI--GGER 169

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 39/196 (19%), Positives = 65/196 (33%), Gaps = 45/196 (22%)

Query: 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSML 220
            V M+++ L   S  VR  A +ALG +               A+ PL+  L +     + 
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKAL-KDEDAWVR 62

Query: 221 RNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQ 280
           R A   L               + A+  L + +   D  V   A  AL  + D      +
Sbjct: 63  RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD------E 106

Query: 281 AVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN 340
             +E      L++ L      V I A   +G I  GD+           +  L + L   
Sbjct: 107 RAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDER---------AVEPLIKALKDE 150

Query: 341 HKKSIKKEACWTISNI 356
               +++ A   +  I
Sbjct: 151 D-GWVRQSAADALGEI 165

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 30/201 (14%), Positives = 62/201 (30%), Gaps = 17/201 (8%)

Query: 85  SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTN 144
            +D   +L A     ++L    S     V++   +  F+  L   +  ++  +A  AL  
Sbjct: 44  EDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINAL-SQENEKVTIKALRALGY 101

Query: 145 VASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSS--- 201
           +       ++  ++  A    V LL S  D +R + +  L  +     S       +   
Sbjct: 102 LVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELV 159

Query: 202 -------GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVK-PALPILQRLI 253
                        L         S        + +          E +   AL +L++ +
Sbjct: 160 VSPDLYTKVAGFCL--FLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKAL 217

Query: 254 HLNDEEVLTDACWALSYLSDG 274
                E +      +S + DG
Sbjct: 218 SFPLLENVKIELLKISRIVDG 238

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 33/275 (12%), Positives = 70/275 (25%), Gaps = 64/275 (23%)

Query: 110 IDEVIK-AGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR--VVIEHGAVPMFV 166
            +  IK    V   +  L   D   +++     LT++        +  +++    V   +
Sbjct: 114 TEIFIKQQENVTLLLSLLEEFDF-HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172

Query: 167 QLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLS---MLRNA 223
            LL+   + +R   V  L  +   + + + +V    A   LL  + E        ++ + 
Sbjct: 173 DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDC 232

Query: 224 TWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVI 283
              L N  +                                                   
Sbjct: 233 LILLQNLLKNNNSN-----------------------------------------QNFFK 251

Query: 284 EAGVCPRLVELLMHPSATV---------------LIPALRTVGNIVTGDDAQTQFVIDNG 328
           E     R+                          L+  L +  N      +  + +   G
Sbjct: 252 EGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCG 311

Query: 329 VLPCLYQL-LTQNHKKSIKKEACWTISNITAGNRA 362
           +L  L  + +       I  E   T+S +  G + 
Sbjct: 312 LLQQLCTILMATGVPADILTETINTVSEVIRGCQV 346

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 47.1 bits (111), Expect = 7e-06
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
               +  +   D   L++  A+ +    +GT  ++ V        +    +S  +DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
            AV ALG V     +          +  ++  L++     +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG--- 644

Query: 239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA 285
              ++ A+ +L  L     + V   A  ALS +     +K+   +  
Sbjct: 645 ---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 7/34 (20%)

Query: 66 QNAIEKKLESIPSMVQGVWSED--PALQLEATTQ 97
          + A+ KKL++  S+   ++++D  PAL ++AT +
Sbjct: 19 KQAL-KKLQA--SL--KLYADDSAPALAIKATME 47

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 23/151 (15%), Positives = 45/151 (29%), Gaps = 37/151 (24%)

Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
           +      +   +   ++ + + AL+             +   A    ++ LS+    +R 
Sbjct: 14  LVPRGSHMADEN-KWVRRDVSTALSR------------MGDEAFEPLLESLSNEDWRIRG 60

Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLR-NATWTLSNFCRGKPPT 237
            A W +GN   D            A+ PL+  L + S    +R  A  +L     G    
Sbjct: 61  AAAWIIGNF-QDER----------AVEPLIKLLEDDS--GFVRSGAARSLEQI--GGER- 104

Query: 238 PFEQVKPALPILQRLIHLNDEEVLTDACWAL 268
                      +++L           A   L
Sbjct: 105 -------VRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 17/118 (14%), Positives = 42/118 (35%), Gaps = 25/118 (21%)

Query: 74  ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
             +      +  E+  ++ + +T   ++         + ++++         L  ++  +
Sbjct: 12  SGLVPRGSHMADENKWVRRDVSTALSRM----GDEAFEPLLES---------L-SNEDWR 57

Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS 191
           ++  AAW + N                AV   ++LL   S  VR  A  +L  + G+ 
Sbjct: 58  IRGAAAWIIGNFQDER-----------AVEPLIKLLEDDSGFVRSGAARSLEQIGGER 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	100.0
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.97
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.96
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.96
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.95
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.94
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.94
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.94
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.94
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.92
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.91
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.9
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.87
3grl_A	651	General vesicular transport factor P115; vesicle t	99.71
3grl_A	651	General vesicular transport factor P115; vesicle t	99.7
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.68
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.63
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.61
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.6
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.57
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.56
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.56
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.53
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.53
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.53
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.45
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.43
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.42
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.39
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.38
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.36
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.33
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.3
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.29
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.27
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.2
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.2
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.12
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.1
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.9
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.88
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.87
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.87
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.85
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.84
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.83
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.82
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.75
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.74
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.74
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.74
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.73
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.73
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.69
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.65
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.44
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.35
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.12
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.11
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.96
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.87
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.86
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.74
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.73
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.58
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.46
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.35
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.29
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.29
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.28
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.27
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.19
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.18
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.06
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.98
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.97
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.95
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	96.78
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	96.71
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.51
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	96.44
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.38
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.32
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.18
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.1
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.1
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.95
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	95.88
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.87
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	95.52
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.41
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.32
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.24
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.1
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.02
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.86
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	94.35
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	94.14
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.73
2p8q_B	40	Snurportin-1; heat repeat, IBB-domain, importin, k	93.11
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	91.87
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	91.53
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	91.38
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	90.85
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	90.13
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	89.4
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	89.2
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	88.47
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	86.76
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	85.34
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	81.75
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	81.05

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=2.1e-60  Score=462.82  Aligned_cols=380  Identities=48%  Similarity=0.777  Sum_probs=298.5

Q ss_pred             CCCCCC-CchhHHhccCCC-CCCcHHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCcccccchhhhhHHhhhcCHHH
Q 016714            1 MSLRPS-TRAEVRKKGYKT-GVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESIPS   78 (384)
Q Consensus         1 ~~~~~~-~~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   78 (384)
                      ||.+++ +.+++|+++||+ |+|++|+||||+++.+||||+||||+|+|||+.....++...+..............++.
T Consensus         1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (529)
T 3tpo_A            1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED   80 (529)
T ss_dssp             -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred             CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence            888886 567899999998 999999999999999999999999999999987554443322222211111122247899


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHh
Q 016714           79 MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIE  158 (384)
Q Consensus        79 lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~  158 (384)
                      +++.++++|++.|+.|+..++++++.+++++++.+++.|++|.|+++|..++++.++.+|+|+|+||+.++++.+..+++
T Consensus        81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~  160 (529)
T 3tpo_A           81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD  160 (529)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999889999999999999999999987666999999999999999999999999999


Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc----hhHHHHHHHHHHhhhhcCC
Q 016714          159 HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS----KLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~----~~~~~~~a~~~L~~L~~~~  234 (384)
                      .|++|.|+.+|.++++.++++|+|+|+||+.+++.+|+.+.+.|++++|+.+|....    ...+++.++|+|++++.+.
T Consensus       161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  240 (529)
T 3tpo_A          161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  240 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999995432    2457899999999999987


Q ss_pred             -CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714          235 -PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI  313 (384)
Q Consensus       235 -~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (384)
                       +........+++|.|+.+|.+++++++.+++|+|++++.+..+....+.+.|+++.|+.+|.++++.++.+++++|+||
T Consensus       241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl  320 (529)
T 3tpo_A          241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  320 (529)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence             5566677789999999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc------cccCCCccc
Q 016714          314 VTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL------FVLHEDFSL  381 (384)
Q Consensus       314 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~~~  381 (384)
                      +++++..+..+++.|+++.|..++.++ ++.++++|+|+|+||+++++++++.+++.|+      ++.++++++
T Consensus       321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v  393 (529)
T 3tpo_A          321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT  393 (529)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred             HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHH
Confidence            999999999999999999999999998 8999999999999999999999999999998      466666543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=2.3e-53  Score=414.02  Aligned_cols=370  Identities=77%  Similarity=1.183  Sum_probs=291.1

Q ss_pred             CCCCCCCchhHHhccCCCCCCcHHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCcccccchhhhhHHhhhcCHHHHH
Q 016714            1 MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESIPSMV   80 (384)
Q Consensus         1 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv   80 (384)
                      ||+.++.++++|+++||++++++|+|+||+++.++|||+||+|+++|||+.....++.++. . ...........+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~-~-~~~~~~~~~~~l~~lv   80 (528)
T 4b8j_A            3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPA-S-AATGVDKKLESLPAMI   80 (528)
T ss_dssp             ------------------------CCCCC-----------------CCCC------------------------CHHHHH
T ss_pred             CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCccccccc-c-cccchhhhHHHHHHHH
Confidence            7788888889999999999999999999999999999999999999999974322221111 0 0111112235799999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcC
Q 016714           81 QGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG  160 (384)
Q Consensus        81 ~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g  160 (384)
                      ..|.++++..+..|++.|+++++....++...+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|
T Consensus        81 ~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g  160 (528)
T 4b8j_A           81 GGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHG  160 (528)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCC
Confidence            99999999999999999999998875588999999999999999999876589999999999999999999999999999


Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChh
Q 016714          161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE  240 (384)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~  240 (384)
                      ++|.|+.+|.++++.+++.|+|+|+||+.+.+.+++.+...|++++|+.++..+.+..++..++|+|++|+...+.....
T Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~  240 (528)
T 4b8j_A          161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE  240 (528)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHH
Confidence            99999999999999999999999999999988899999999999999999976778999999999999999987777777


Q ss_pred             hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 016714          241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ  320 (384)
Q Consensus       241 ~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  320 (384)
                      ...+++|.|+.+|.+++++++..++|+|++++.+.+...+.+.+.|+++.|+.+|.++++.++..|+++|+|++.+++..
T Consensus       241 ~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~  320 (528)
T 4b8j_A          241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQ  320 (528)
T ss_dssp             HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHH
Confidence            78999999999999999999999999999999999888888999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          321 TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       321 ~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      .+.+++.|+++.|..+|.++.++.++++|+|+|+|++.+++++++.+++.|+
T Consensus       321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~  372 (528)
T 4b8j_A          321 TQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI  372 (528)
T ss_dssp             HHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTC
T ss_pred             HHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
Confidence            9999999999999999987657899999999999999999999999999888

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=4.5e-49  Score=383.77  Aligned_cols=364  Identities=53%  Similarity=0.811  Sum_probs=312.1

Q ss_pred             CchhHHhccCCC-C-CCcHHHHHhHHHHHHHHHHHhhhHHHHhhhhcccc---CCCccccc-c-hhhhhHH-hhhcCHHH
Q 016714            7 TRAEVRKKGYKT-G-VDADEARRRREDNLVEIRKNKREDNLLKKRREGLL---LQPQQQGL-D-ASQNAIE-KKLESIPS   78 (384)
Q Consensus         7 ~~~~~~~~~~k~-~-~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~~~~~---~~~~~~~~-~-~~~~~~~-~~~~~l~~   78 (384)
                      .+++.|++.||+ | ++++|+|+||++..++|||+||++++.|||+....   .+...++. . ....... .....++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   91 (530)
T 1wa5_B           12 FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQ   91 (530)
T ss_dssp             CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHH
T ss_pred             CchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHH
Confidence            456789999999 8 99999999999999999999999999999997542   11100000 0 0000000 12257999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHh
Q 016714           79 MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIE  158 (384)
Q Consensus        79 lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~  158 (384)
                      ++..|+++++..+..|++.|+++++....+++..+++.|++|.|+.+|.+++++.++..|+|+|++++.++++.+..+++
T Consensus        92 lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~  171 (530)
T 1wa5_B           92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD  171 (530)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999999999999999887656788899999999999999998733999999999999999998899999999


Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-CCC
Q 016714          159 HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPT  237 (384)
Q Consensus       159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~  237 (384)
                      .|+++.|+.+|.++++.+++.|+|+|+|++.+.+..++.+...|++++|+.++ .+.+..++..++|+|++|+.+. +..
T Consensus       172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~  250 (530)
T 1wa5_B          172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQP  250 (530)
T ss_dssp             TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999999999888999999999999999999 5578899999999999999987 666


Q ss_pred             ChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 016714          238 PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD  317 (384)
Q Consensus       238 ~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~  317 (384)
                      ......+++|.|+.+|.++++.++..++|+|++|+...++....+++.|+++.|+.+|.++++.++..|+++|+|++.++
T Consensus       251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~  330 (530)
T 1wa5_B          251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN  330 (530)
T ss_dssp             CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence            67777999999999999999999999999999999998888888899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          318 DAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       318 ~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      +...+.+++.|+++.|+.+|.++ ++.++++|+|+|+|++.+++++++.+++.|+
T Consensus       331 ~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~  384 (530)
T 1wa5_B          331 DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANL  384 (530)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence            99989999999999999999999 8999999999999999999999999998888

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=6.8e-47  Score=365.82  Aligned_cols=350  Identities=48%  Similarity=0.771  Sum_probs=286.8

Q ss_pred             HHHHHHHHHHHhhhHHHHhhhhccccCCCcccccchhhhhHHhhhcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC
Q 016714           29 REDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSP  108 (384)
Q Consensus        29 r~~~~~~lRk~kr~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~  108 (384)
                      |....++.|+++++......++....+++.... +.... ....-..++.+++.++|+|++.|+.|+..+|+++|.++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~p   91 (510)
T 3ul1_B           14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMA-DIGSN-QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQP   91 (510)
T ss_dssp             -----------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCC
T ss_pred             CCcccHHHHHHHHHhhccCCccccCCccccchh-hhccc-cchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc
Confidence            455677888888888888777665433332211 11111 1111136899999999999999999999999999999899


Q ss_pred             cHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhh
Q 016714          109 PIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA  188 (384)
Q Consensus       109 ~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  188 (384)
                      +++.+++.|+||.|+++|++++++.+|.+|+|+|+||++++++++..+++.|++|.|+.+|.++++.++++|+|+|+||+
T Consensus        92 pi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa  171 (510)
T 3ul1_B           92 PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA  171 (510)
T ss_dssp             CHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999987666899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhHHHhcCChHHHHHHhcccc----hhHHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhccCCHhHHHH
Q 016714          189 GDSPSCRDLVLSSGALMPLLAQLNEHS----KLSMLRNATWTLSNFCRGK-PPTPFEQVKPALPILQRLIHLNDEEVLTD  263 (384)
Q Consensus       189 ~~~~~~~~~i~~~g~i~~L~~~l~~~~----~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~i~~~  263 (384)
                      .+++.+|+.+.+.|++++|+.++....    ...+++.++|++++++.+. +........+++|.|+.+|.+++++++..
T Consensus       172 ~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~  251 (510)
T 3ul1_B          172 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD  251 (510)
T ss_dssp             TTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             hCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHH
Confidence            999999999999999999999995432    2457899999999999987 55666677899999999999999999999


Q ss_pred             HHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCch
Q 016714          264 ACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKK  343 (384)
Q Consensus       264 a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~  343 (384)
                      ++|+|++|+.+..+....+.+.|+++.|+.+|.+++..++.+++++|+|++++++..+..+++.|+++.|..++.++ ++
T Consensus       252 A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~  330 (510)
T 3ul1_B          252 SCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KT  330 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SH
T ss_pred             HHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CH
Confidence            99999999999999988999999999999999999999999999999999999999999999999999999999998 89


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHhCCc------cccCCCccc
Q 016714          344 SIKKEACWTISNITAGNRAQIQVHDSFHL------FVLHEDFSL  381 (384)
Q Consensus       344 ~v~~~a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~~~  381 (384)
                      .++++|+|+|+||+++++++++.+++.|+      ++..+++++
T Consensus       331 ~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v  374 (510)
T 3ul1_B          331 NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT  374 (510)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence            99999999999999999999999999998      466666643

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.2e-37  Score=301.06  Aligned_cols=305  Identities=25%  Similarity=0.399  Sum_probs=273.5

Q ss_pred             hcCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           73 LESIPSMVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        73 ~~~l~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      .+.+|.|+++|++ +++.+|..|+|+|.++++++ ++....+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++
T Consensus        99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~  176 (510)
T 3ul1_B           99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA  176 (510)
T ss_dssp             TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence            3789999999975 45899999999999999875 777888999999999999999988 99999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHhhcCCC-----HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHH
Q 016714          152 HTRVVIEHGAVPMFVQLLSSGS-----DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWT  226 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~  226 (384)
                      .+..+++.|+++.|+.++.+++     ..+...++|+|+|++.+...........++++.|+.++ .+.+.+++..++|+
T Consensus       177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~a  255 (510)
T 3ul1_B          177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  255 (510)
T ss_dssp             HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHH
Confidence            9999999999999999998744     45788999999999987655555555667899999999 77888999999999


Q ss_pred             HhhhhcCCCCCChh-hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHH
Q 016714          227 LSNFCRGKPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIP  305 (384)
Q Consensus       227 L~~L~~~~~~~~~~-~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~  305 (384)
                      |++|+.+.+..... ...+++|.|+.+|.+++..++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..
T Consensus       256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~  335 (510)
T 3ul1_B          256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  335 (510)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHH
T ss_pred             HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHH
Confidence            99999875332222 23789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCc------cccCCC
Q 016714          306 ALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDSFHL------FVLHED  378 (384)
Q Consensus       306 a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~~~~------ll~~~~  378 (384)
                      |+|+|+||+.+++.+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++++++.++++.|+      ++...|
T Consensus       336 A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d  414 (510)
T 3ul1_B          336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  414 (510)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             HHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999 89999999999999998 79999999999998      677776


Q ss_pred             ccc
Q 016714          379 FSL  381 (384)
Q Consensus       379 ~~~  381 (384)
                      .++
T Consensus       415 ~~i  417 (510)
T 3ul1_B          415 TKI  417 (510)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=2.8e-37  Score=300.05  Aligned_cols=305  Identities=25%  Similarity=0.395  Sum_probs=273.9

Q ss_pred             hcCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           73 LESIPSMVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        73 ~~~l~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      .+.+|.|++.|.. +++.+|..|+++|.++++++ +.....+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~  195 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA  195 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence            4779999999974 55899999999999998875 667788999999999999999998 99999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHhhcCCC-----HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHH
Q 016714          152 HTRVVIEHGAVPMFVQLLSSGS-----DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWT  226 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~  226 (384)
                      .+..+++.|+++.|+.+|..++     ..+...++|+|+|++.+...........++++.|+.++ .+.+++++..++|+
T Consensus       196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a  274 (529)
T 3tpo_A          196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  274 (529)
T ss_dssp             HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence            9999999999999999998643     46788999999999987655555556677899999999 78888999999999


Q ss_pred             HhhhhcCCCCCChh-hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHH
Q 016714          227 LSNFCRGKPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIP  305 (384)
Q Consensus       227 L~~L~~~~~~~~~~-~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~  305 (384)
                      |++++.+.+..... ...+++|.|+.+|.+++..++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..
T Consensus       275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~  354 (529)
T 3tpo_A          275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  354 (529)
T ss_dssp             HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred             HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence            99999875332222 23789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCc------cccCCC
Q 016714          306 ALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDSFHL------FVLHED  378 (384)
Q Consensus       306 a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~~~~------ll~~~~  378 (384)
                      |+|+|+||+.+++.+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++++++.++++.|+      ++...|
T Consensus       355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d  433 (529)
T 3tpo_A          355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  433 (529)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999 89999999999999997 79999999999998      577776


Q ss_pred             ccc
Q 016714          379 FSL  381 (384)
Q Consensus       379 ~~~  381 (384)
                      .++
T Consensus       434 ~~i  436 (529)
T 3tpo_A          434 TKI  436 (529)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=3.1e-35  Score=280.25  Aligned_cols=297  Identities=61%  Similarity=0.984  Sum_probs=274.5

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc-CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      .++.+++.++++++.++..|+..|+++++...+++.+.+++. |++|.|+++|.+++++.++..|+|+|++++.++++.+
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            479999999999999999999999999875446777888888 9999999999988339999999999999999888889


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      ..+++.|++|.|+.+|.++++.+++.|+|+|++++.+.+..++.+.+.|+++.|+.++..+.+..++..++|+|.+++.+
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            88999999999999999999999999999999999998888999999999999999995557889999999999999988


Q ss_pred             C-CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714          234 K-PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN  312 (384)
Q Consensus       234 ~-~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (384)
                      . +........+++|.|+.++.++|+.++..++|+|++++...++....+.+.|+++.|+.+|.++++.++..|+++|++
T Consensus       181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  260 (450)
T 2jdq_A          181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN  260 (450)
T ss_dssp             SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence            6 566666668999999999999999999999999999999888888888899999999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       313 l~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      ++.+.+...+.+++.|+++.|..++.++ ++.+++.|+|+|+|++.+++++++.+++.|+
T Consensus       261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~  319 (450)
T 2jdq_A          261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANI  319 (450)
T ss_dssp             HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred             HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence            9999988888899999999999999998 8999999999999999999999999998887

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.1e-36  Score=299.54  Aligned_cols=301  Identities=14%  Similarity=0.119  Sum_probs=256.3

Q ss_pred             CHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           75 SIPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPIDEVI-KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        75 ~l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      .++.++++|.++  +++++..|++.|..+...  .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.++++
T Consensus       378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~  454 (810)
T 3now_A          378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK  454 (810)
T ss_dssp             HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence            367888899887  889999999999988543  34444555 6799999999999888 89999999999999986531


Q ss_pred             -----------------------------h---HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHH
Q 016714          152 -----------------------------H---TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVL  199 (384)
Q Consensus       152 -----------------------------~---~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~  199 (384)
                                                   .   .+.+++.|++|.|+.+|.++++.++++|+|+|+||+++. .+|..+.
T Consensus       455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~~r~~Vv  533 (810)
T 3now_A          455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-ELRGKVV  533 (810)
T ss_dssp             CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-HHHHHHH
T ss_pred             hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHH
Confidence                                         2   278899999999999999999999999999999999765 4899999


Q ss_pred             hcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-CCCCh--hhhhchHHHHHHhhccCC-HhHHHHHHHHHHHhccCC
Q 016714          200 SSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPTPF--EQVKPALPILQRLIHLND-EEVLTDACWALSYLSDGP  275 (384)
Q Consensus       200 ~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~--~~~~~~~~~L~~lL~~~~-~~i~~~a~~~l~~l~~~~  275 (384)
                      +.|++++|+.+| .+.+...++.++|+|++|+.+. |...+  ....+++|.|+.+|.+++ ...+.+|+|+|.||+..+
T Consensus       534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~  612 (810)
T 3now_A          534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN  612 (810)
T ss_dssp             HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence            999999999999 5666788999999999999864 22111  123578999999998663 345679999999999998


Q ss_pred             hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHH
Q 016714          276 NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN  355 (384)
Q Consensus       276 ~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  355 (384)
                      ++..+.+++.|+++.|+.+|.++++.++.+|+++|+|++.+++.+...+...|.++.|+.++.++ +..++++|+|+|+|
T Consensus       613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan  691 (810)
T 3now_A          613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAI  691 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999997665554442379999999999998 89999999999999


Q ss_pred             HhcCCHHHHHHHHh-CCc------cccCCCccc
Q 016714          356 ITAGNRAQIQVHDS-FHL------FVLHEDFSL  381 (384)
Q Consensus       356 l~~~~~~~i~~l~~-~~~------ll~~~~~~~  381 (384)
                      ++++++.+++.+++ .|.      ++.++++++
T Consensus       692 Lt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~v  724 (810)
T 3now_A          692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAV  724 (810)
T ss_dssp             HHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHH
T ss_pred             HhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHH
Confidence            99999999999998 676      677777654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=7.5e-35  Score=288.56  Aligned_cols=296  Identities=13%  Similarity=0.091  Sum_probs=254.0

Q ss_pred             hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC---------------------------c----HHHHHHcCCHHH
Q 016714           73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSP---------------------------P----IDEVIKAGVVPR  121 (384)
Q Consensus        73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~---------------------------~----~~~~~~~g~i~~  121 (384)
                      .+.+|.|+++++++++.+++.|+++|.|+..+....                           .    ++.+++.|++|.
T Consensus       420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~  499 (810)
T 3now_A          420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA  499 (810)
T ss_dssp             HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence            467999999999999999999999999998753111                           0    267889999999


Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-Cchh-hHHH
Q 016714          122 FVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS-PSCR-DLVL  199 (384)
Q Consensus       122 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~-~~i~  199 (384)
                      |+.+|++++ +.++..|+|+|+||+. +++++..+++.|++|.|+.+|.++++..++.|+|+|+|++.+. +... ....
T Consensus       500 LV~LL~s~s-~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~  577 (810)
T 3now_A          500 LCALAKTES-HNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR  577 (810)
T ss_dssp             HHHHHTCCC-HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred             HHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence            999999988 9999999999999996 5889999999999999999999999999999999999998643 2210 0001


Q ss_pred             hcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHH
Q 016714          200 SSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDK  278 (384)
Q Consensus       200 ~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~  278 (384)
                      ..|++++|+.+|..+.+......++|+|+||+...+......+ .+++|.|+.+|.++++.++..|+++|+||+.+++..
T Consensus       578 ~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~  657 (810)
T 3now_A          578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI  657 (810)
T ss_dssp             HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH
T ss_pred             hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH
Confidence            2468999999995333444556899999999998533222333 789999999999999999999999999999876654


Q ss_pred             HHHHHH-cCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-cCchHHHHHHhccCCchhHHHHHHHHHHHH
Q 016714          279 IQAVIE-AGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVID-NGVLPCLYQLLTQNHKKSIKKEACWTISNI  356 (384)
Q Consensus       279 ~~~~~~-~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~-~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl  356 (384)
                      . .+.+ .|.++.|+.++.+++..++..|+|+|+|++.+++.+.+.+++ .|+++.|+.++.++ +..+++.|+|+|+|+
T Consensus       658 ~-~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL  735 (810)
T 3now_A          658 K-MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNM  735 (810)
T ss_dssp             H-HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHH
T ss_pred             H-HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence            4 4454 799999999999999999999999999999988888899998 89999999999999 999999999999999


Q ss_pred             hcCCHHHHHHHHhCCc
Q 016714          357 TAGNRAQIQVHDSFHL  372 (384)
Q Consensus       357 ~~~~~~~i~~l~~~~~  372 (384)
                      +.+++++.+++.+.|+
T Consensus       736 ~~~s~e~~~~l~e~G~  751 (810)
T 3now_A          736 INAGEEIAKKLFETDI  751 (810)
T ss_dssp             HTTCHHHHHHHHTSTH
T ss_pred             HhCCHHHHHHHHHCCC
Confidence            9999999999999998

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=3.2e-35  Score=276.30  Aligned_cols=303  Identities=18%  Similarity=0.180  Sum_probs=234.2

Q ss_pred             hhhcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCHHHHHHhhcCCCC-----------hHHHHHH
Q 016714           71 KKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPI-DEVIKAGVVPRFVEFLGRHDM-----------PQLQFEA  138 (384)
Q Consensus        71 ~~~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~-----------~~~~~~a  138 (384)
                      .+++.++.++..+.++++..      .++++++.+.++++ ..+++.|++|.|+++|...+.           ++++.+|
T Consensus        29 ~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a  102 (458)
T 3nmz_A           29 TKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA  102 (458)
T ss_dssp             ----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred             chHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence            45577899999999888773      33344443334555 778999999999999997432           7999999


Q ss_pred             HHHHHHHhcCCchhHHHHHhcCCh----------HHHHHhhcCCC--HH-----HHH-------HHHHHHHhhhCCCCch
Q 016714          139 AWALTNVASGTSEHTRVVIEHGAV----------PMFVQLLSSGS--DD-----VRE-------QAVWALGNVAGDSPSC  194 (384)
Q Consensus       139 ~~~L~nl~~~~~~~~~~i~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nl~~~~~~~  194 (384)
                      +|+|+||+.++++.+....+.|++          +.+++++.+..  .+     +++       +|+|+|+|++.+ +.+
T Consensus       103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~  181 (458)
T 3nmz_A          103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH  181 (458)
T ss_dssp             HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence            999999999999999999988888          67777777642  22     444       999999999776 679


Q ss_pred             hhHHHhcCChHHHHHHhcc----------cchhHHHHHHHHHHhhhhcCCCCCChhh--hhchHHHHHHhhccCCHhHHH
Q 016714          195 RDLVLSSGALMPLLAQLNE----------HSKLSMLRNATWTLSNFCRGKPPTPFEQ--VKPALPILQRLIHLNDEEVLT  262 (384)
Q Consensus       195 ~~~i~~~g~i~~L~~~l~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~~~~L~~lL~~~~~~i~~  262 (384)
                      |+.+.+.|++++|+.+|..          +.++.++++++|+|.|||.+++......  ..+++|.|+.+|.+++++++.
T Consensus       182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~  261 (458)
T 3nmz_A          182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ  261 (458)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence            9999999999999999942          2356789999999999999864333333  356799999999999999999


Q ss_pred             HHHHHHHHhccC-ChHHHHHHHHcCChHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHH-HcCchHHHHHHhcc
Q 016714          263 DACWALSYLSDG-PNDKIQAVIEAGVCPRLVELL-MHPSATVLIPALRTVGNIVTGDDAQTQFVI-DNGVLPCLYQLLTQ  339 (384)
Q Consensus       263 ~a~~~l~~l~~~-~~~~~~~~~~~g~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~-~~g~l~~L~~ll~~  339 (384)
                      .++|+|++|+.. ++.....+.+.|+++.|+++| .+.++.++..|+++|+||+.++++....+. ..|+++.|+.+|.+
T Consensus       262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~  341 (458)
T 3nmz_A          262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY  341 (458)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence            999999999986 567778889999999999975 667889999999999999986655545555 78999999999998


Q ss_pred             CCch---hHHHHHHHHHHHHhc---CCHHHHHHHHhCCc------cccCCCcc
Q 016714          340 NHKK---SIKKEACWTISNITA---GNRAQIQVHDSFHL------FVLHEDFS  380 (384)
Q Consensus       340 ~~~~---~v~~~a~~~L~nl~~---~~~~~i~~l~~~~~------ll~~~~~~  380 (384)
                      ..+.   .++++|+|+|+|++.   +++++.+.+++.|.      +|++++++
T Consensus       342 ~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~  394 (458)
T 3nmz_A          342 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT  394 (458)
T ss_dssp             CCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChH
Confidence            7322   499999999999997   89999999999998      56777654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=1.7e-35  Score=270.47  Aligned_cols=275  Identities=20%  Similarity=0.177  Sum_probs=239.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC----------CChHHHHHHHHHHHHHhcCCchhHHHHH
Q 016714           88 PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRH----------DMPQLQFEAAWALTNVASGTSEHTRVVI  157 (384)
Q Consensus        88 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~----------~~~~~~~~a~~~L~nl~~~~~~~~~~i~  157 (384)
                      ...+..|+++|.++.. + +++++.+++.|+++.|+.+|..+          .++.++..|+|+|+|++.+++..+..+.
T Consensus        46 ~~~~~~A~~aL~nls~-d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~  123 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSF-D-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC  123 (354)
T ss_dssp             GGTHHHHHHHHHHHHT-S-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-C-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3455689999999954 3 67888999999999999999521          1278999999999999998777887776


Q ss_pred             h-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCC-CCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-
Q 016714          158 E-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGD-SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-  234 (384)
Q Consensus       158 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-  234 (384)
                      . .|++|.|+.+|.++++++++.|+|+|+||+.. ++.++..+.+.|++++|+++|..+.+.++++.++++|.||+... 
T Consensus       124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence            5 46699999999999999999999999999985 56689999999999999998756678889999999999999854 


Q ss_pred             CCCChhh-hhchHHHHHHhhccCCH----hHHHHHHHHHHHhcc---CChHHHHHHHHcCChHHHHHhcCCCChhhHHHH
Q 016714          235 PPTPFEQ-VKPALPILQRLIHLNDE----EVLTDACWALSYLSD---GPNDKIQAVIEAGVCPRLVELLMHPSATVLIPA  306 (384)
Q Consensus       235 ~~~~~~~-~~~~~~~L~~lL~~~~~----~i~~~a~~~l~~l~~---~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a  306 (384)
                      ....... ..+++|.|+.+|.+.++    +++..++|+|.+|+.   ..++..+.+.+.|+++.|+.+|.+++..++..|
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A  283 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA  283 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence            2222222 47999999999987654    599999999999997   677888899999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 016714          307 LRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ  365 (384)
Q Consensus       307 ~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~  365 (384)
                      +++|+|++.+++++.+.+++.|+++.|+.++.++ ++.++++|+|+|.||+.+++++++
T Consensus       284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~~  341 (354)
T 3nmw_A          284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKYK  341 (354)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHHh
Confidence            9999999988999999999999999999999998 899999999999999997776543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=271.69  Aligned_cols=306  Identities=18%  Similarity=0.182  Sum_probs=255.3

Q ss_pred             hhcCHHHHHHHhcCC------------CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCH----------HHHHHhhcCC
Q 016714           72 KLESIPSMVQGVWSE------------DPALQLEATTQFRKLLSIERSPPIDEVIKAGVV----------PRFVEFLGRH  129 (384)
Q Consensus        72 ~~~~l~~lv~~l~s~------------~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i----------~~Lv~lL~~~  129 (384)
                      +.+.+|.|++.|+..            +++.+..|+|+|.++++++ ++..+...+.|++          +.+++++.+.
T Consensus        68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  146 (458)
T 3nmz_A           68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH  146 (458)
T ss_dssp             HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence            348999999999964            3699999999999999987 7777777888888          7788888764


Q ss_pred             C-ChH-----HHH-------HHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHH
Q 016714          130 D-MPQ-----LQF-------EAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-----------GSDDVREQAVWALG  185 (384)
Q Consensus       130 ~-~~~-----~~~-------~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~  185 (384)
                      . +.+     ++.       .|+|+|+|++.+ +++|+.+++.|+++.|+.+|..           .++.++..|+|+|.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~  225 (458)
T 3nmz_A          147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT  225 (458)
T ss_dssp             SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence            2 112     444       899999999775 9999999999999999999942           34779999999999


Q ss_pred             hhhCCCCchhhHHHh-cCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-CCCChh-hhhchHHHHHHhh-ccCCHhHH
Q 016714          186 NVAGDSPSCRDLVLS-SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPTPFE-QVKPALPILQRLI-HLNDEEVL  261 (384)
Q Consensus       186 nl~~~~~~~~~~i~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~-~~~~~~~~L~~lL-~~~~~~i~  261 (384)
                      ||+.+++..+..+.. .|++++|+.+| .+.+++++..++|+|.||+... +..... ...|++|.|+.+| .+.+..++
T Consensus       226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~  304 (458)
T 3nmz_A          226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL  304 (458)
T ss_dssp             HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred             HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence            999888767776654 45699999999 6788999999999999999852 222222 2379999999975 66789999


Q ss_pred             HHHHHHHHHhccCChHHHHHHH-HcCChHHHHHhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHHcCchHHH
Q 016714          262 TDACWALSYLSDGPNDKIQAVI-EAGVCPRLVELLMHPSA----TVLIPALRTVGNIVT---GDDAQTQFVIDNGVLPCL  333 (384)
Q Consensus       262 ~~a~~~l~~l~~~~~~~~~~~~-~~g~~~~L~~lL~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~i~~~g~l~~L  333 (384)
                      ..++++|++|+.+.++....+. ..|+++.|+.+|.+.++    .++..|+++|.|++.   ++++..+.+++.|+++.|
T Consensus       305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L  384 (458)
T 3nmz_A          305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL  384 (458)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence            9999999999985554444555 78999999999987654    489999999999996   788999999999999999


Q ss_pred             HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc------cccCCCccc
Q 016714          334 YQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL------FVLHEDFSL  381 (384)
Q Consensus       334 ~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~~~  381 (384)
                      +.+|.++ +..++++|+|+|+|++.+++++++.+++.|+      ++..++.++
T Consensus       385 v~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v  437 (458)
T 3nmz_A          385 LQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI  437 (458)
T ss_dssp             HHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHH
T ss_pred             HHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence            9999998 8999999999999999999999999999998      566666543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=7.8e-34  Score=276.27  Aligned_cols=303  Identities=29%  Similarity=0.402  Sum_probs=271.1

Q ss_pred             cCHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           74 ESIPSMVQGVWSED-PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        74 ~~l~~lv~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      +.+|.|++.|.+++ +.++..|+++|.++.+.+ ......+++.|++|.|+.+|.+++ +.++..|+|+|++|+.+++..
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            67999999999887 999999999999998764 567778889999999999999987 999999999999999988899


Q ss_pred             HHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714          153 TRVVIEHGAVPMFVQLL-SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~  231 (384)
                      +..+.+.|+++.|+.+| .+.++.++..++|+|++++...+.. ......|+++.|+.++ .+.+..++..++|+|.+++
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~  272 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS  272 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 6688999999999999999876543 3445678999999999 7778999999999999999


Q ss_pred             cCCCCCC-hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC-ChhhHHHHHHH
Q 016714          232 RGKPPTP-FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP-SATVLIPALRT  309 (384)
Q Consensus       232 ~~~~~~~-~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~-~~~v~~~a~~~  309 (384)
                      .+.+... .....+++|.|+.+|.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus       273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~  352 (528)
T 4b8j_A          273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT  352 (528)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence            8743222 222368999999999999999999999999999999888888899999999999999988 89999999999


Q ss_pred             HHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCc------cccCCCccc
Q 016714          310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDSFHL------FVLHEDFSL  381 (384)
Q Consensus       310 l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~~~~------ll~~~~~~~  381 (384)
                      |+|++.+++.....+++.|+++.|+.++.++ ++.++++|+|+|+|++. ++++++.++++.|+      ++..++.++
T Consensus       353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v  430 (528)
T 4b8j_A          353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRI  430 (528)
T ss_dssp             HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence            9999998888889999999999999999998 89999999999999998 58999999999988      566655543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=7e-35  Score=277.73  Aligned_cols=297  Identities=16%  Similarity=0.155  Sum_probs=244.3

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .+|.++..|.+++++.|..|++.|++++..+ ++....+.+.|++|.|+++|++++ +.++..|+|+|+||+.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            6899999999999999999999999987542 444558999999999999999888 99999999999999998899999


Q ss_pred             HHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc--------c-------chhH
Q 016714          155 VVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE--------H-------SKLS  218 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~--------~-------~~~~  218 (384)
                      .+++.|++|.|+.+|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.+|..        .       .+.+
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 88999999999999999998 568898888 999999999931        1       3567


Q ss_pred             HHHHHHHHHhhhhcCCCCCChhhh-h-chHHHHHHhhcc------CCHhHHHHHHHHHHHhccCC---------------
Q 016714          219 MLRNATWTLSNFCRGKPPTPFEQV-K-PALPILQRLIHL------NDEEVLTDACWALSYLSDGP---------------  275 (384)
Q Consensus       219 ~~~~a~~~L~~L~~~~~~~~~~~~-~-~~~~~L~~lL~~------~~~~i~~~a~~~l~~l~~~~---------------  275 (384)
                      +++.++|+|+|||.+ +....... . |++|.|+.+|.+      .+..++..++++|.+++...               
T Consensus       159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~  237 (457)
T 1xm9_A          159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence            888999999999987 43333333 3 899999999986      46678889999999987321               


Q ss_pred             -----------------------------------hHHHHHHHHcCChHHHHHhcCC-CChhhHHHHHHHHHHhhcCChH
Q 016714          276 -----------------------------------NDKIQAVIEAGVCPRLVELLMH-PSATVLIPALRTVGNIVTGDDA  319 (384)
Q Consensus       276 -----------------------------------~~~~~~~~~~g~~~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~~~  319 (384)
                                                         +...+.+.+.|+++.|+.+|.+ .++.+++.|+|+|+|++.++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence                                               1122234556778899999964 4689999999999999987643


Q ss_pred             H---H-HHHH-HcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc------cccCCCc
Q 016714          320 Q---T-QFVI-DNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL------FVLHEDF  379 (384)
Q Consensus       320 ~---~-~~i~-~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~  379 (384)
                      .   . +.++ +.|++|.|+++|.++ +..++++|+|+|+|++.+.  +++.++..|+      ++..+++
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~  385 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTG  385 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCS
T ss_pred             chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCC
Confidence            2   2 3344 689999999999999 8999999999999999853  4455665555      5666654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.4e-33  Score=268.82  Aligned_cols=302  Identities=27%  Similarity=0.362  Sum_probs=266.9

Q ss_pred             cCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           74 ESIPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        74 ~~l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      +.++.+++.+.++ ++.++..|++.|.++.+.+ .+....+++.|++|.|+++|.+++ +.++..|+|+|++++.++++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            4689999999988 8999999999999998764 556677889999999999999988 999999999999999988889


Q ss_pred             HHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCC-CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714          153 TRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDS-PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF  230 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L  230 (384)
                      +..+++.|+++.|+.++.+ .+..++..++|+|++++.+. +..+..+. .++++.|+.++ .+.+..++..++|+|.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999996 78999999999999999765 43333333 78999999999 677889999999999999


Q ss_pred             hcCCCCC-ChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHH
Q 016714          231 CRGKPPT-PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT  309 (384)
Q Consensus       231 ~~~~~~~-~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~  309 (384)
                      +...+.. ......+++|.|+.+|.++++.++..++++|++++.+.+...+.+.+.|+++.|+.+|.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            9875322 222236899999999999999999999999999999988888888899999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCc------cccCCCcc
Q 016714          310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDSFHL------FVLHEDFS  380 (384)
Q Consensus       310 l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~~~~------ll~~~~~~  380 (384)
                      |+|++.+++...+.+++.|+++.|+.++.++ ++.++++|+|+|+|++. +++++++.+++.|+      ++..++.+
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  376 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSK  376 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHH
Confidence            9999999998888899999999999999998 89999999999999998 48899999998888      45655543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.8e-33  Score=273.80  Aligned_cols=304  Identities=28%  Similarity=0.358  Sum_probs=269.2

Q ss_pred             hcCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           73 LESIPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        73 ~~~l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      .+.+|.|+..|.++ ++.++..|+++|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++.+++.
T Consensus       129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~  206 (530)
T 1wa5_B          129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTD  206 (530)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCcc
Confidence            36899999999987 8999999999999998754 456677889999999999999887 99999999999999998889


Q ss_pred             hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714          152 HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~  231 (384)
                      .+..++..|+++.|+.++.+.+..++..|+|+|++++.+...........++++.|+.++ .+.+..++..++|+|.+|+
T Consensus       207 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~  285 (530)
T 1wa5_B          207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLS  285 (530)
T ss_dssp             HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999977622334556678999999999 6778899999999999999


Q ss_pred             cCCCCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714          232 RGKPPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV  310 (384)
Q Consensus       232 ~~~~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l  310 (384)
                      ...+....... .+++|.|+.+|.+.++.++..++++|++++.+.+...+.+.+.|+++.|+.+|.++++.++..|+++|
T Consensus       286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL  365 (530)
T 1wa5_B          286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI  365 (530)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            87532222222 58999999999999999999999999999999888888889999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCH--HHHHHHHhCCc------cccCCCcc
Q 016714          311 GNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNR--AQIQVHDSFHL------FVLHEDFS  380 (384)
Q Consensus       311 ~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~--~~i~~l~~~~~------ll~~~~~~  380 (384)
                      +|++.+++...+.+++.|+++.|+.+|.++ ++.+++.|+|+|+|++. +++  ++++.+++.|+      ++..++.+
T Consensus       366 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~  443 (530)
T 1wa5_B          366 SNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR  443 (530)
T ss_dssp             HHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHH
T ss_pred             HHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHH
Confidence            999998888888899999999999999988 89999999999999998 566  88999999888      45555543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=3e-32  Score=261.65  Aligned_cols=293  Identities=18%  Similarity=0.189  Sum_probs=237.7

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcC-Cchh
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASG-TSEH  152 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~-~~~~  152 (384)
                      ..+|.++.+|.++++.+|..|++.|.+++..+ .++...+++.|+||.|+.+|.+++ ++++..|+|+|+||+.+ ++++
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence            57999999999999999999999999998754 777888999999999999999988 99999999999999996 6899


Q ss_pred             HHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc-----------------cc
Q 016714          153 TRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN-----------------EH  214 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~-----------------~~  214 (384)
                      +..+++.|+||.|+.+|.+ .+.+++++++++|+||+.. +.++..+.+ +++++|++++.                 ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999997 6889999999999999985 457777775 57999999762                 11


Q ss_pred             chhHHHHHHHHHHhhhhcCCCCCChhhh----------------------------------------------------
Q 016714          215 SKLSMLRNATWTLSNFCRGKPPTPFEQV----------------------------------------------------  242 (384)
Q Consensus       215 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~----------------------------------------------------  242 (384)
                      .+..++.+++|+|.||+...+.......                                                    
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            2456667777777777654321000000                                                    


Q ss_pred             -----------------------hchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChH---HHH-HHHHcCChHHHHHh
Q 016714          243 -----------------------KPALPILQRLIH-LNDEEVLTDACWALSYLSDGPND---KIQ-AVIEAGVCPRLVEL  294 (384)
Q Consensus       243 -----------------------~~~~~~L~~lL~-~~~~~i~~~a~~~l~~l~~~~~~---~~~-~~~~~g~~~~L~~l  294 (384)
                                             .++++.++.+|. +.++.+++.|+|+|++|+.+...   ..+ .+.+.++++.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                                   123445566664 45678888999999999876521   222 34456889999999


Q ss_pred             cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCC-------chhHHHHHHHHHHHHhcCCHHHHHHH
Q 016714          295 LMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-------KKSIKKEACWTISNITAGNRAQIQVH  367 (384)
Q Consensus       295 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~-------~~~v~~~a~~~L~nl~~~~~~~i~~l  367 (384)
                      |.+++..++..|+++|+|++.+...  +.++..|+++.|+.+|.++.       ...+...|||+|+||+++++++.+.+
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I  441 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDARN--KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL  441 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChhH--HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            9999999999999999999986543  34567899999999999862       25788899999999999999999999


Q ss_pred             HhCCc
Q 016714          368 DSFHL  372 (384)
Q Consensus       368 ~~~~~  372 (384)
                      ++.|.
T Consensus       442 ~~~g~  446 (584)
T 3l6x_A          442 RETQG  446 (584)
T ss_dssp             HHTTH
T ss_pred             HHCCC
Confidence            99998

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.2e-32  Score=260.48  Aligned_cols=280  Identities=20%  Similarity=0.217  Sum_probs=237.8

Q ss_pred             hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHhcCCch
Q 016714           73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLG-RHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      .+.+|.|++.|.++++.+|..|+++|+++.+.+ +++...+++.|++|.|+++|. +++ +++++.|+|+|+||+.+ ++
T Consensus        43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~~k~~i~~~G~i~~Lv~lL~~~~~-~~~~~~a~~aL~nLa~~-~~  119 (457)
T 1xm9_A           43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKLETRRQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLSST-DE  119 (457)
T ss_dssp             TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTS-SS
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHhhCCC-HHHHHHHHHHHHHHhcC-HH
Confidence            478999999999999999999999999998753 677777889999999999999 666 99999999999999997 78


Q ss_pred             hHHHHHhcCChHHHHHhh--------cC--------CCHHHHHHHHHHHHhhhCCCCchhhHHHhc-CChHHHHHHhccc
Q 016714          152 HTRVVIEHGAVPMFVQLL--------SS--------GSDDVREQAVWALGNVAGDSPSCRDLVLSS-GALMPLLAQLNEH  214 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL--------~~--------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~-g~i~~L~~~l~~~  214 (384)
                      .+..+++ |++|.|+.+|        .+        .++.++..|+|+|+||+.+ +..++.+.+. |++++|+.+|...
T Consensus       120 ~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~  197 (457)
T 1xm9_A          120 LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNC  197 (457)
T ss_dssp             THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred             hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhh
Confidence            8888999 9999999999        33        2466777999999999988 7788999887 9999999877420


Q ss_pred             --------------------------------------------------------------------------------
Q 016714          215 --------------------------------------------------------------------------------  214 (384)
Q Consensus       215 --------------------------------------------------------------------------------  214 (384)
                                                                                                      
T Consensus       198 ~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (457)
T 1xm9_A          198 VAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG  277 (457)
T ss_dssp             HHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGG
T ss_pred             ccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHH
Confidence                                                                                            


Q ss_pred             ------------------chhHHHHHHHHHHhhhhcCCCCCC----hhhh--hchHHHHHHhhccCCHhHHHHHHHHHHH
Q 016714          215 ------------------SKLSMLRNATWTLSNFCRGKPPTP----FEQV--KPALPILQRLIHLNDEEVLTDACWALSY  270 (384)
Q Consensus       215 ------------------~~~~~~~~a~~~L~~L~~~~~~~~----~~~~--~~~~~~L~~lL~~~~~~i~~~a~~~l~~  270 (384)
                                        .++.+++.++|+|+|||.+.....    ...+  .+++|.|+++|.+++.+++..|+|+|++
T Consensus       278 ~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~n  357 (457)
T 1xm9_A          278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN  357 (457)
T ss_dssp             GGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHH
Confidence                              123456678999999998753321    1122  6899999999999999999999999999


Q ss_pred             hccCChHHHHHHHHcCChHHHHHhcCCCCh------hhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchh
Q 016714          271 LSDGPNDKIQAVIEAGVCPRLVELLMHPSA------TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKS  344 (384)
Q Consensus       271 l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~------~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~  344 (384)
                      ++.+.. . ..++..|+++.|+.+|.+.++      ++...++++|+|++.++++....+.+.|+++.|..++.+++++.
T Consensus       358 ls~~~~-~-~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~  435 (457)
T 1xm9_A          358 MSRHPL-L-HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPK  435 (457)
T ss_dssp             HHTSGG-G-HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHH
T ss_pred             HhcCHH-H-HHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHH
Confidence            998643 3 345667899999999987643      58889999999999999999999999999999999999875789


Q ss_pred             HHHHHHHHHHHHhcC
Q 016714          345 IKKEACWTISNITAG  359 (384)
Q Consensus       345 v~~~a~~~L~nl~~~  359 (384)
                      +++.|+|+|.|+...
T Consensus       436 i~~~A~~~L~~~~~~  450 (457)
T 1xm9_A          436 AAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHHHHcc
Confidence            999999999999863

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=5.8e-31  Score=252.72  Aligned_cols=295  Identities=16%  Similarity=0.169  Sum_probs=241.2

Q ss_pred             hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      .+.||.|+++|.++++.+|..|+++|++++..+..++...+++.|+||.|+.+|.++.++.++..|+++|.|++. +++.
T Consensus        89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~  167 (584)
T 3l6x_A           89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSI  167 (584)
T ss_dssp             TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGG
T ss_pred             cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchh
Confidence            478999999999999999999999999998753367888899999999999999974338999999999999998 5788


Q ss_pred             HHHHHhcCChHHHHHhhc------------------CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCC-hHHHHHHhcc
Q 016714          153 TRVVIEHGAVPMFVQLLS------------------SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGA-LMPLLAQLNE  213 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~-i~~L~~~l~~  213 (384)
                      +..+++ +++|.|+.++.                  .+++.++++|+++|.||+.+++..|..+.+.++ ++.|+.++..
T Consensus       168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~  246 (584)
T 3l6x_A          168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA  246 (584)
T ss_dssp             HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred             hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence            888886 57999999871                  235799999999999999988777777776544 4566666532


Q ss_pred             -------------------------------------------------------------------------cchhHHH
Q 016714          214 -------------------------------------------------------------------------HSKLSML  220 (384)
Q Consensus       214 -------------------------------------------------------------------------~~~~~~~  220 (384)
                                                                                               +.++.++
T Consensus       247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~  326 (584)
T 3l6x_A          247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL  326 (584)
T ss_dssp             HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred             hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence                                                                                     1223445


Q ss_pred             HHHHHHHhhhhcCCCCCC---hhhh--hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc
Q 016714          221 RNATWTLSNFCRGKPPTP---FEQV--KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL  295 (384)
Q Consensus       221 ~~a~~~L~~L~~~~~~~~---~~~~--~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL  295 (384)
                      ++++|+|.|||.+.....   ...+  .+++|.|+.+|.+++..++..++|+|+||+.+....  .++..|+++.|+.+|
T Consensus       327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~--~~I~~g~ip~LV~LL  404 (584)
T 3l6x_A          327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK--ELIGKHAIPNLVKNL  404 (584)
T ss_dssp             HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH--HHHHhCCHHHHHHHh
Confidence            566666666666531110   1122  578999999999999999999999999999886543  345789999999999


Q ss_pred             CCC--------ChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHH
Q 016714          296 MHP--------SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN-HKKSIKKEACWTISNITAGNRAQIQV  366 (384)
Q Consensus       296 ~~~--------~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~i~~  366 (384)
                      .++        +..+...|+++|+||+++++++++.+++.|+++.|+.++.+. ..+.+++.|+|+|+|+.. .++....
T Consensus       405 ~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~-~~elr~~  483 (584)
T 3l6x_A          405 PGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG-YKELRKP  483 (584)
T ss_dssp             SSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred             cCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc-CHHHHHH
Confidence            876        357889999999999999999999999999999999999874 378999999999999998 6777777


Q ss_pred             HHhCCc
Q 016714          367 HDSFHL  372 (384)
Q Consensus       367 l~~~~~  372 (384)
                      +-+.|+
T Consensus       484 ~kk~G~  489 (584)
T 3l6x_A          484 LEKEGW  489 (584)
T ss_dssp             HHTTTC
T ss_pred             HHHcCC
Confidence            778887

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=100.00  E-value=5.1e-31  Score=231.29  Aligned_cols=240  Identities=28%  Similarity=0.444  Sum_probs=222.7

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714          117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD  196 (384)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (384)
                      |.+|.|+++|.+++ ++++..|+|+|.+++.++++.+..+++.|+++.|+.+|.++++.++..++|+|++++.+++..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            57999999999988 99999999999999998888999999999999999999999999999999999999999888999


Q ss_pred             HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChh-hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 016714          197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP  275 (384)
Q Consensus       197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~  275 (384)
                      .+.+.|+++.|+.++ .+.+++++..++|+|.+|+...+..... ...+++|.|++++.++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6778999999999999999764332222 23789999999999999999999999999999988


Q ss_pred             hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHH
Q 016714          276 NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN  355 (384)
Q Consensus       276 ~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  355 (384)
                      +.....+.+.|+++.|+.+|.++++.++..|+++|+|++.+++.....+.+.|+++.|..++.++ ++.+++.|+|+|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999998899999999999999999999998 89999999999999


Q ss_pred             HhcC
Q 016714          356 ITAG  359 (384)
Q Consensus       356 l~~~  359 (384)
                      ++..
T Consensus       239 l~~~  242 (252)
T 4hxt_A          239 IKSG  242 (252)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9963

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=7.7e-31  Score=230.49  Aligned_cols=239  Identities=35%  Similarity=0.537  Sum_probs=219.9

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714          117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD  196 (384)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (384)
                      ..++.++..|.+++ ++++..|+++|.++.+.+++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+++..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            46899999999998 89999999999887776788888999999999999999999999999999999999998888999


Q ss_pred             HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCC-ChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 016714          197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT-PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP  275 (384)
Q Consensus       197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~  275 (384)
                      .+.+.|+++.|+.+| .++++.++..++|+|.+|+...+.. ......+++|.|+.+|.++++.++..++|+|++++..+
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6678899999999999999875433 33334789999999999999999999999999999988


Q ss_pred             hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHH
Q 016714          276 NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN  355 (384)
Q Consensus       276 ~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  355 (384)
                      ++....+.+.|+++.|+.+|.++++.++..|+++|+|++.+++.....+++.|+++.|..++.++ ++.+++.|+|+|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999998999999999999999999999998 89999999999999


Q ss_pred             Hhc
Q 016714          356 ITA  358 (384)
Q Consensus       356 l~~  358 (384)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            974

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=2.4e-30  Score=227.37  Aligned_cols=239  Identities=36%  Similarity=0.547  Sum_probs=218.1

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      ..++.+++.|++++++++..|++.|+++++.. .+++..+++.|++|.|+.+|.+++ +.++..|+|+|++++.++++.+
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence            46799999999999999999999999988874 777888999999999999999988 9999999999999999889999


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      ..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+.....+.+.|+++.|+.++ .+.+..++..++|+|.+|+..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999988775448889999999999999 667889999999999999987


Q ss_pred             CCCCChh-hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714          234 KPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN  312 (384)
Q Consensus       234 ~~~~~~~-~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (384)
                      .+..... ...+++|.|+.+|.++++.++..++++|++++..+++....+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            5332222 237899999999999999999999999999999888888899999999999999999999999999999999


Q ss_pred             hhc
Q 016714          313 IVT  315 (384)
Q Consensus       313 l~~  315 (384)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            975

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=9e-30  Score=223.31  Aligned_cols=242  Identities=28%  Similarity=0.400  Sum_probs=221.7

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      +.++.+++.|.+++++++..|++.|.+++... .+....+++.|+++.|+.+|.+++ +.++..|+|+|++++.++++.+
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence            56899999999999999999999999998764 457888999999999999999988 9999999999999999889999


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      ..+.+.|+++.|+.+|.++++.++..|+|+|+|++...+..+..+.+.|+++.|+.++ .+.++.++..++|+|.+++..
T Consensus        80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~  158 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASG  158 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999988888899999999999999999 677789999999999999987


Q ss_pred             CCCCC-hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714          234 KPPTP-FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN  312 (384)
Q Consensus       234 ~~~~~-~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (384)
                      .+... .....+++|.|+.++.++++.++..++++|++++.+.+.....+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus       159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN  238 (252)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            53322 22337899999999999999999999999999999888888899999999999999999999999999999999


Q ss_pred             hhcCCh
Q 016714          313 IVTGDD  318 (384)
Q Consensus       313 l~~~~~  318 (384)
                      ++...+
T Consensus       239 l~~~~~  244 (252)
T 4hxt_A          239 IKSGGW  244 (252)
T ss_dssp             HHHTCB
T ss_pred             HHcCCC
Confidence            987543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.97  E-value=3.6e-29  Score=243.22  Aligned_cols=293  Identities=18%  Similarity=0.200  Sum_probs=257.4

Q ss_pred             hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      .+.+|.+++.+.++++.++..|++.|.+++..+ ......+.+.|++|.|+++|.+++ +.++..++.+|.+++.++++.
T Consensus       100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~  177 (529)
T 1jdh_A          100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES  177 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            378999999999999999999999999998764 556777889999999999999987 899999999999999988999


Q ss_pred             HHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714          153 TRVVIEHGAVPMFVQLLSSG-SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~  231 (384)
                      +..+.+.|+++.|+.+++++ +...+..++.+|.|++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+
T Consensus       178 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~  255 (529)
T 1jdh_A          178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS  255 (529)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHh
Confidence            99999999999999999864 566778889999999975 45788899999999999999 5668889999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC--CChhhHHHHHHH
Q 016714          232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH--PSATVLIPALRT  309 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~--~~~~v~~~a~~~  309 (384)
                      ...+..  ....+++|.|++++.+++++++..++|+|++|+.++++....+.+.|+++.|+.+|.+  .++.++.+|+++
T Consensus       256 ~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~  333 (529)
T 1jdh_A          256 DAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  333 (529)
T ss_dssp             TTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence            975432  2346899999999999999999999999999999888888899999999999999965  347899999999


Q ss_pred             HHHhhcCChH---HHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          310 VGNIVTGDDA---QTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       310 l~nl~~~~~~---~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      |+|++.++++   ....+++.|+++.|..++.++.++.++++|+|+|+|++.++..+ +.+++.|+
T Consensus       334 L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~  398 (529)
T 1jdh_A          334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGA  398 (529)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTH
T ss_pred             HHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HHHHHcCC
Confidence            9999886543   35578899999999999998834699999999999999976655 78888887

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=1.3e-29  Score=231.56  Aligned_cols=246  Identities=20%  Similarity=0.181  Sum_probs=209.8

Q ss_pred             hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHhhhCCCCchhhHHHh
Q 016714          132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-----------GSDDVREQAVWALGNVAGDSPSCRDLVLS  200 (384)
Q Consensus       132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~  200 (384)
                      ...+..|+|+|+|++.+ +++|..+++.|+++.|+.+|..           .++.++..|+|+|.||+.+++..+..+..
T Consensus        46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35556899999999996 8999999999999999999952           34789999999999999888767777754


Q ss_pred             -cCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-CCCChh-hhhchHHHHHHhh-ccCCHhHHHHHHHHHHHhccCCh
Q 016714          201 -SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPTPFE-QVKPALPILQRLI-HLNDEEVLTDACWALSYLSDGPN  276 (384)
Q Consensus       201 -~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~-~~~~~~~~L~~lL-~~~~~~i~~~a~~~l~~l~~~~~  276 (384)
                       .|++++|+.+| .+.+++++..++|+|.||+... +..... ...|++|.|+++| .+.+.+++..++++|++|+.+.+
T Consensus       125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence             45599999999 6788899999999999999862 222222 2379999999975 66789999999999999998665


Q ss_pred             HHHHHHH-HcCChHHHHHhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHHcCchHHHHHHhccCCchhHHHH
Q 016714          277 DKIQAVI-EAGVCPRLVELLMHPSA----TVLIPALRTVGNIVT---GDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKE  348 (384)
Q Consensus       277 ~~~~~~~-~~g~~~~L~~lL~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~  348 (384)
                      +....+. ..|+++.|+.+|.++++    .++..|+++|.|++.   ++++..+.+++.|+++.|+.+|.++ +..++++
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence            5555566 78999999999987654    489999999999986   7888899999999999999999998 8999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhCCc------cccCCCcc
Q 016714          349 ACWTISNITAGNRAQIQVHDSFHL------FVLHEDFS  380 (384)
Q Consensus       349 a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~~  380 (384)
                      |+|+|+|++.+++++++.+++.|+      +++.++.+
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~  320 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM  320 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHH
Confidence            999999999999999999999999      56666554

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.97  E-value=7.5e-29  Score=246.56  Aligned_cols=293  Identities=19%  Similarity=0.200  Sum_probs=257.5

Q ss_pred             hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      .+.++.|++.|+++++.++..|+++|.++++.. ......+.+.|++|.|+.+|.+++ +.++..++.+|.+++.++++.
T Consensus        97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~  174 (644)
T 2z6h_A           97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES  174 (644)
T ss_dssp             TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHH
Confidence            367999999999999999999999999998865 566777889999999999999987 888888899999999988999


Q ss_pred             HHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714          153 TRVVIEHGAVPMFVQLLSSG-SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~  231 (384)
                      +..+.+.|+++.|+.++.+. ...++..++.+|.|++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+||
T Consensus       175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~  252 (644)
T 2z6h_A          175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS  252 (644)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999875 467889999999999964 45789999999999999999 5667889999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC--ChhhHHHHHHH
Q 016714          232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP--SATVLIPALRT  309 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~--~~~v~~~a~~~  309 (384)
                      ...+.  .....+++|.|+.+|.+.+++++..++|+|++|+..+......+.+.|+++.|+.+|.+.  .+.++..|+++
T Consensus       253 ~~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a  330 (644)
T 2z6h_A          253 DAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  330 (644)
T ss_dssp             GGCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence            87533  234468999999999999999999999999999999888888899999999999999763  37999999999


Q ss_pred             HHHhhcCCh--HHHH-HHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          310 VGNIVTGDD--AQTQ-FVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       310 l~nl~~~~~--~~~~-~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      |+||+...+  +..+ .+++.|+++.|..+|.++.++.++++|+|+|+|++.++..+ +.+++.|+
T Consensus       331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~  395 (644)
T 2z6h_A          331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGA  395 (644)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTH
T ss_pred             HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCC
Confidence            999997543  2333 47889999999999998744799999999999999976665 78888887

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.96  E-value=2.5e-27  Score=239.56  Aligned_cols=293  Identities=19%  Similarity=0.207  Sum_probs=254.6

Q ss_pred             hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      .+.++.|++.|.++++.++..|+++|.+++... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.
T Consensus       233 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~  310 (780)
T 2z6g_A          233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES  310 (780)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHH
Confidence            367999999999999999999999999998764 556666778999999999999877 899999999999999988999


Q ss_pred             HHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714          153 TRVVIEHGAVPMFVQLLSSGS-DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~  231 (384)
                      +..+++.|+++.|+.++++.+ ...+..++.+|.+++... ..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+
T Consensus       311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~  388 (780)
T 2z6g_A          311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS  388 (780)
T ss_dssp             HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHh
Confidence            999999999999999998754 566778899999999754 4788889999999999999 5667889999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC-C-hhhHHHHHHH
Q 016714          232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP-S-ATVLIPALRT  309 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~-~-~~v~~~a~~~  309 (384)
                      ...+.  .....+++|.|+.+|.+.++.++..++|+|++|+.++++....+.+.|+++.|+.+|.+. + ..++..|+++
T Consensus       389 ~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~a  466 (780)
T 2z6g_A          389 DAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  466 (780)
T ss_dssp             TTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHH
Confidence            87633  223478999999999999999999999999999999888888899999999999999753 3 4899999999


Q ss_pred             HHHhhcCChH---HHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          310 VGNIVTGDDA---QTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       310 l~nl~~~~~~---~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      |+||+...++   ....+.+.|+++.|+.+|.++..+.++++|+|+|+|++.++..+ ..+++.|+
T Consensus       467 L~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~  531 (780)
T 2z6g_A          467 LRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGA  531 (780)
T ss_dssp             HHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTH
T ss_pred             HHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCC
Confidence            9999875543   23467889999999999998844599999999999999966655 78888887

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.96  E-value=1.7e-27  Score=231.37  Aligned_cols=293  Identities=16%  Similarity=0.179  Sum_probs=252.8

Q ss_pred             cCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           74 ESIPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        74 ~~l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      +.++.+++.|.++ ++.++..|+..|+++...  .++...+.+.|++|.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence            4689999999754 899999999999998553  457788899999999999999988 999999999999999987788


Q ss_pred             HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                      +..+.+.|++|.|+.++.+++..++..++.+|.+++.+++..+..+.+.|+++.|+.++....+......++.+|.+++.
T Consensus       136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            88999999999999999999999999999999999998888899999999999999999766667788889999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714          233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN  312 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (384)
                      ...........+++|.|+.++.++++.++..++|+|.+++.......   ...|+++.|+++|.++++.++..|+++|+|
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            64322222337899999999999999999999999999998754321   123789999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCchHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHhCCc
Q 016714          313 IVTGDDAQTQFVIDNGVLPCLYQLLTQN-HKKSIKKEACWTISNITAGNRA---QIQVHDSFHL  372 (384)
Q Consensus       313 l~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~---~i~~l~~~~~  372 (384)
                      ++.++++....+.+.|+++.|+.++.+. +++.++..|+++|+|++.++++   ....+++.|.
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~  356 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG  356 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTC
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCC
Confidence            9998888889999999999999999863 2479999999999999985432   3556777776

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.95  E-value=2.3e-26  Score=228.66  Aligned_cols=293  Identities=16%  Similarity=0.173  Sum_probs=250.7

Q ss_pred             cCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           74 ESIPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        74 ~~l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      +.++.+++.|.++ +++++..|+..|+++...  ..+...+.+.|+++.|+.+|.+++ +.++..|+++|.|++.+++..
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence            4589999999865 899999999999987543  457778889999999999999988 999999999999999987788


Q ss_pred             HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                      +..+++.|++|.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++........++.++.+|.+|+.
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            88899999999999999999999999999999999987777889999999999999999666667788999999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714          233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN  312 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (384)
                      ...........++++.|+.++.+.+..++..++|+|.+|+......   ....++++.|+.+|.+.++.++..|+++|+|
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6433333333789999999999999999999999999999765331   1123789999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCchHHHHHHhccCCc-hhHHHHHHHHHHHHhcCC--HHHHHH-HHhCCc
Q 016714          313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHK-KSIKKEACWTISNITAGN--RAQIQV-HDSFHL  372 (384)
Q Consensus       313 l~~~~~~~~~~i~~~g~l~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~--~~~i~~-l~~~~~  372 (384)
                      ++.+++.....+++.|+++.|+.++.+..+ +.++..|+|+|+|++..+  .++.+. +++.|.
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~  353 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG  353 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTH
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccC
Confidence            999888888999999999999999987423 799999999999999743  333343 666665

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.94  E-value=6.2e-26  Score=193.51  Aligned_cols=200  Identities=33%  Similarity=0.486  Sum_probs=181.4

Q ss_pred             HHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCc
Q 016714          114 IKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS  193 (384)
Q Consensus       114 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  193 (384)
                      ...|..+.|+.+|.+++ +.++..|+|+|++++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+++.
T Consensus         9 ~~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ----CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             cccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence            35688999999999988 99999999999999988899999999999999999999999999999999999999988888


Q ss_pred             hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChh-hhhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 016714          194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYLS  272 (384)
Q Consensus       194 ~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~  272 (384)
                      .+..+.+.|+++.|+.+| .+.++.++..++|+|.|++...+..... ...+++|.|+.+|.++++.++..++|+|++++
T Consensus        88 ~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA  166 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            889999999999999999 6778999999999999999865333222 23789999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714          273 DGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT  315 (384)
Q Consensus       273 ~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (384)
                      ..+++....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus       167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            9988888889999999999999999999999999999999975

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.94  E-value=6.2e-26  Score=229.34  Aligned_cols=293  Identities=16%  Similarity=0.179  Sum_probs=249.4

Q ss_pred             cCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           74 ESIPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        74 ~~l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      +.++.|++.|.++ ++.++..|+.+|.++...  ..+...+.+.|++|.|+.+|++++ +.++..|+|+|+||+.+++..
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            4689999999855 899999999999997543  455777889999999999999988 999999999999999988888


Q ss_pred             HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                      +..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++...........++.+|.+|+.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999988788888999999999999999666566677889999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714          233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN  312 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (384)
                      ...........+++|.|+.++.+.+..++..++|+|.+|+......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6332222233789999999999999999999999999999765431   1124679999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCchHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHhCCc
Q 016714          313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHK-KSIKKEACWTISNITAGNRA---QIQVHDSFHL  372 (384)
Q Consensus       313 l~~~~~~~~~~i~~~g~l~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~~---~i~~l~~~~~  372 (384)
                      |+.+++.....+++.|+++.|+.+|.+..+ ..++..|+|+|+||+.++++   ....+.+.|.
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~  489 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYG  489 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCC
Confidence            999988888999999999999999987423 48999999999999975433   2335666665

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.94  E-value=2e-25  Score=190.31  Aligned_cols=199  Identities=33%  Similarity=0.483  Sum_probs=180.8

Q ss_pred             hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCC
Q 016714          158 EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT  237 (384)
Q Consensus       158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~  237 (384)
                      ..|..+.|+.+|.++++.++..|+|+|++++..++..+..+.+.|+++.|+.+| .+.++.++..++|+|.|++.+.+..
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            457899999999999999999999999999988888889999999999999999 6668899999999999999765333


Q ss_pred             Ch-hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714          238 PF-EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG  316 (384)
Q Consensus       238 ~~-~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (384)
                      .. ....+++|.|+.+|.++++.++..++|+|++++.+.++....+.+.|+++.|+.+|.++++.++..|+++|+|++..
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            22 23378999999999999999999999999999998888888899999999999999999999999999999999998


Q ss_pred             ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          317 DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       317 ~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ++.....+.+.|+++.|..++.++ ++.+++.|+|+|.+++.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence            888888999999999999999998 99999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.94  E-value=4.1e-25  Score=196.65  Aligned_cols=226  Identities=17%  Similarity=0.191  Sum_probs=186.9

Q ss_pred             hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHH
Q 016714          132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQ-LLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQ  210 (384)
Q Consensus       132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~  210 (384)
                      .+-+..|+..|.+++.+ .++...+.+.|++|.|+. +|.++++.+++.|+|+|+|++.+++.+++.+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            46788999999999984 678888899999999999 9999999999999999999999999999999999999999999


Q ss_pred             hcccchhHHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChH
Q 016714          211 LNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCP  289 (384)
Q Consensus       211 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~  289 (384)
                      |..+++..+++.++|+|+|++++.+.....+. .+++|.|+.+|.+++..++..++|+|++++.++++.+..+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            96556788999999999999998643322333 78999999999999999999999999999999888899999999999


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc--CchHHH---HHHhccCC-chhHHHHHHHHHHHHhc
Q 016714          290 RLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN--GVLPCL---YQLLTQNH-KKSIKKEACWTISNITA  358 (384)
Q Consensus       290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~--g~l~~L---~~ll~~~~-~~~v~~~a~~~L~nl~~  358 (384)
                      .|+.+|.++++.++..|+++|+||+.+.+......-..  .+...|   ..-++..+ ..++.+.|.-++.++..
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999998865443322211  121222   23333231 35666677777777664

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.92  E-value=7.4e-24  Score=188.53  Aligned_cols=236  Identities=15%  Similarity=0.137  Sum_probs=187.5

Q ss_pred             CHHHHHHHhcCCC------------HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHH-hhcCCCChHHHHHHHHH
Q 016714           75 SIPSMVQGVWSED------------PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVE-FLGRHDMPQLQFEAAWA  141 (384)
Q Consensus        75 ~l~~lv~~l~s~~------------~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~-lL~~~~~~~~~~~a~~~  141 (384)
                      .++..+..|.++.            .+.+..|+..|..++..  .++...+.+.|++|.|+. +|.+++ +.++..|+|+
T Consensus        29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~--~dna~~~~~~G~l~~Lv~~lL~s~~-~~vr~~Aa~~  105 (296)
T 1xqr_A           29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEAGA-AGLRWRAAQL  105 (296)
T ss_dssp             HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTCSS-HHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC--hhhHHHHHHcCCHHHHHHHHHcCCC-HHHHHHHHHH
Confidence            4566677776642            35778899999988753  456777889999999999 999988 9999999999


Q ss_pred             HHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHH
Q 016714          142 LTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSML  220 (384)
Q Consensus       142 L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~  220 (384)
                      |++++.+++.++..+++.|++|.|+.+|.+ ++..++..|+|+|+|++.+.+.....+.+.|++++|+.+| .+.+..++
T Consensus       106 Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL-~~~d~~v~  184 (296)
T 1xqr_A          106 IGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLK  184 (296)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHHHH
T ss_pred             HHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-cCCCHHHH
Confidence            999999999999999999999999999996 5899999999999999998877777888899999999999 67789999


Q ss_pred             HHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc--CChHH---HHHh
Q 016714          221 RNATWTLSNFCRGKPPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA--GVCPR---LVEL  294 (384)
Q Consensus       221 ~~a~~~L~~L~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~--g~~~~---L~~l  294 (384)
                      ..++|+|++|+.+.+......+ .|++|.|+.+|.+++..++..++++|++|+...+.........  .+...   -.+.
T Consensus       185 ~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~  264 (296)
T 1xqr_A          185 VKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQL  264 (296)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHH
Confidence            9999999999988543333333 8999999999999999999999999999998865443322211  11111   1222


Q ss_pred             cC-CC-ChhhHHHHHHHHHHhh
Q 016714          295 LM-HP-SATVLIPALRTVGNIV  314 (384)
Q Consensus       295 L~-~~-~~~v~~~a~~~l~nl~  314 (384)
                      +. ++ +..+...+..++-++.
T Consensus       265 lq~~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          265 LQQHEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             HTTCGGGHHHHHHHHHHHHHHC
T ss_pred             ccchHHHHHHHHHHHHHHHHHc
Confidence            33 22 3455566666666554

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.91  E-value=4.6e-24  Score=181.94  Aligned_cols=197  Identities=20%  Similarity=0.151  Sum_probs=172.1

Q ss_pred             CHHHHHHhhcCCCCh--HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchh
Q 016714          118 VVPRFVEFLGRHDMP--QLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR  195 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~--~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  195 (384)
                      .+|.++++|.+++ +  +++..|+++|.+++.++++.+..+++.|+||.|+.+|.++++++++.|+|+|.||+.+++.++
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            5899999999988 6  899999999999999889999999999999999999999999999999999999999888899


Q ss_pred             hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc----------------cCCHh
Q 016714          196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIH----------------LNDEE  259 (384)
Q Consensus       196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~----------------~~~~~  259 (384)
                      ..+.+.|++++|+++|....+.++++.++.+|+||+... ........+++|.|+.++.                ..+++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            999999999999999955678899999999999999864 3334445678999988662                13678


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHc-CChHHHHHhcCC------CChhhHHHHHHHHHHhhcC
Q 016714          260 VLTDACWALSYLSDGPNDKIQAVIEA-GVCPRLVELLMH------PSATVLIPALRTVGNIVTG  316 (384)
Q Consensus       260 i~~~a~~~l~~l~~~~~~~~~~~~~~-g~~~~L~~lL~~------~~~~v~~~a~~~l~nl~~~  316 (384)
                      ++..+.++|.+|+..+++..+.+.+. |+++.|+.++..      .+.+.++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999999887777788876 778999999964      2567899999999999864

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.1e-22  Score=198.06  Aligned_cols=291  Identities=11%  Similarity=0.103  Sum_probs=228.8

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-HcCCHHHHHHhhcC-CCChHHHHHHHHHHHHHhcCCch-
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVI-KAGVVPRFVEFLGR-HDMPQLQFEAAWALTNVASGTSE-  151 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~nl~~~~~~-  151 (384)
                      ..+.+++.+.+++.+.+..|++.|..+ +.. .+..+.+. +.|+++.|+++++. .+ ..+.+.++.+|.|++...+. 
T Consensus       335 La~~~~~~L~~~~~~~~~~AvEgLaYL-Sl~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~  411 (778)
T 3opb_A          335 LSEIFINAISRRIVPKVEMSVEALAYL-SLK-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEX  411 (778)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHH-TTS-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHH-hCC-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCccc
Confidence            356777788887777789999999977 432 33444455 55779999999996 55 78999999999999984331 


Q ss_pred             -------------------------------------hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch
Q 016714          152 -------------------------------------HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC  194 (384)
Q Consensus       152 -------------------------------------~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  194 (384)
                                                           .+..+.+.|++|.|+.++.++++.+++.++|+|+||+.+ +.+
T Consensus       412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~  490 (778)
T 3opb_A          412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNF  490 (778)
T ss_dssp             CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGG
T ss_pred             chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHH
Confidence                                                 356678899999999999999999999999999999977 568


Q ss_pred             hhHHHhcCChHHHHHHhcccchh--HHHHHHHHHHhhhhcCC-CCCChh--hhhchHHHHHHhhcc-CCH----------
Q 016714          195 RDLVLSSGALMPLLAQLNEHSKL--SMLRNATWTLSNFCRGK-PPTPFE--QVKPALPILQRLIHL-NDE----------  258 (384)
Q Consensus       195 ~~~i~~~g~i~~L~~~l~~~~~~--~~~~~a~~~L~~L~~~~-~~~~~~--~~~~~~~~L~~lL~~-~~~----------  258 (384)
                      |..+.+.|++++|+.++....+.  ..+..|+++|++++... |...+.  ...+++|.|+.+|.. ++.          
T Consensus       491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~  570 (778)
T 3opb_A          491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ  570 (778)
T ss_dssp             HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred             HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence            99999999999999999655433  27889999999999653 211110  114899999999983 221          


Q ss_pred             ---hHHHHHHHHHHHhccCCh----HHHHHHHHc-CChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc---
Q 016714          259 ---EVLTDACWALSYLSDGPN----DKIQAVIEA-GVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN---  327 (384)
Q Consensus       259 ---~i~~~a~~~l~~l~~~~~----~~~~~~~~~-g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---  327 (384)
                         --..+|+.||.||+..++    +....+++. |+++.|..+|.+++..++..|+++++|++.+.+...+.+.+.   
T Consensus       571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~  650 (778)
T 3opb_A          571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENP  650 (778)
T ss_dssp             CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSH
T ss_pred             ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCc
Confidence               126799999999999872    334567875 999999999999999999999999999998444322334322   


Q ss_pred             ---CchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 016714          328 ---GVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSF  370 (384)
Q Consensus       328 ---g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~  370 (384)
                         +.++.|+.++..+ +..+|+.|+|+|+|++.+++..++.+++.
T Consensus       651 ~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~  695 (778)
T 3opb_A          651 QSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTK  695 (778)
T ss_dssp             HHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTC
T ss_pred             hhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHc
Confidence               2378899999888 99999999999999998888888888876

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.90  E-value=1.5e-23  Score=178.76  Aligned_cols=197  Identities=16%  Similarity=0.153  Sum_probs=167.5

Q ss_pred             cCHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           74 ESIPSMVQGVWSEDP--ALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~--~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      ..+|.+++.|.++++  ++|..|++.+.++...+ +++...+++.|+||.|+++|++++ +++|+.|+|+|+||+.++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence            378999999999988  89999999999887654 667888999999999999999988 99999999999999998899


Q ss_pred             hHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc---------------cc
Q 016714          152 HTRVVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE---------------HS  215 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~---------------~~  215 (384)
                      ++..+++.|+||.|+.+|. +.+.+++++++.+|+||+.... ++..+.+ +++++|+.++..               ..
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~  163 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLL  163 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence            9999999999999999998 5789999999999999997654 6777776 468999886630               12


Q ss_pred             hhHHHHHHHHHHhhhhcCCCCCChhhh--hchHHHHHHhhccC------CHhHHHHHHHHHHHhccC
Q 016714          216 KLSMLRNATWTLSNFCRGKPPTPFEQV--KPALPILQRLIHLN------DEEVLTDACWALSYLSDG  274 (384)
Q Consensus       216 ~~~~~~~a~~~L~~L~~~~~~~~~~~~--~~~~~~L~~lL~~~------~~~i~~~a~~~l~~l~~~  274 (384)
                      +.+++.+++++|.||+...+.......  .|+++.|+.+++..      +...++.++.+|.||+..
T Consensus       164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            568999999999999986533333333  57889999999652      567899999999999865

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.8e-21  Score=189.72  Aligned_cols=280  Identities=12%  Similarity=0.106  Sum_probs=224.1

Q ss_pred             cCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCC-------------------C------------------cHHHHHH
Q 016714           74 ESIPSMVQGVWS-EDPALQLEATTQFRKLLSIERS-------------------P------------------PIDEVIK  115 (384)
Q Consensus        74 ~~l~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~-------------------~------------------~~~~~~~  115 (384)
                      +.++.|++.+++ ++..+.+.++..|.|++...+.                   |                  +...+++
T Consensus       376 ~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~e  455 (778)
T 3opb_A          376 SFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILR  455 (778)
T ss_dssp             HHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHH
Confidence            458899999984 7788999999999999864321                   0                  2344668


Q ss_pred             cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHH---HHHHHHHHHHhhhCC-C
Q 016714          116 AGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDD---VREQAVWALGNVAGD-S  191 (384)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~---v~~~a~~~L~nl~~~-~  191 (384)
                      .|++|.|+.++++++ +.++..|+|+|.|++. +++++..+++.|+++.|+.+|.+....   .+..|+.+|.+++.. +
T Consensus       456 aGvIp~Lv~Ll~S~s-~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n  533 (778)
T 3opb_A          456 TELISFLKREMHNLS-PNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN  533 (778)
T ss_dssp             TTHHHHHHHHGGGSC-HHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred             CcCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence            899999999999988 9999999999999987 499999999999999999999986554   899999999999843 3


Q ss_pred             CchhhHHH---hcCChHHHHHHhcccchh-------------HHHHHHHHHHhhhhcCCCC----CChhhh--hchHHHH
Q 016714          192 PSCRDLVL---SSGALMPLLAQLNEHSKL-------------SMLRNATWTLSNFCRGKPP----TPFEQV--KPALPIL  249 (384)
Q Consensus       192 ~~~~~~i~---~~g~i~~L~~~l~~~~~~-------------~~~~~a~~~L~~L~~~~~~----~~~~~~--~~~~~~L  249 (384)
                      |..  .+-   ..|++++|+.+|..++..             --...++.+|.||+..+.+    .....+  .+++|.|
T Consensus       534 p~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L  611 (778)
T 3opb_A          534 PGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTI  611 (778)
T ss_dssp             HHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHH
T ss_pred             HHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHH
Confidence            321  110   137899999999522211             1266899999999998521    123333  3799999


Q ss_pred             HHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc------CChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHH
Q 016714          250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA------GVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQF  323 (384)
Q Consensus       250 ~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~------g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~  323 (384)
                      ..+|.+++..++..|+++++||+..+....+.+.+.      +.++.|+.++..++..++..|+++|+|++++.+.....
T Consensus       612 ~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~  691 (778)
T 3opb_A          612 ENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKE  691 (778)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHH
Confidence            999999999999999999999998655321233322      23788999999999999999999999999888888888


Q ss_pred             HHHc-CchHHHHHHhcc--CCchhHHHHHHHHHHHHhc
Q 016714          324 VIDN-GVLPCLYQLLTQ--NHKKSIKKEACWTISNITA  358 (384)
Q Consensus       324 i~~~-g~l~~L~~ll~~--~~~~~v~~~a~~~L~nl~~  358 (384)
                      +++. ++++.++.++..  + ++.++..++.++.|++.
T Consensus       692 ll~~~~gi~~Ll~lL~~~~~-~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          692 LLTKKELIENAIQVFADQID-DIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HTTCHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHT
T ss_pred             HHHccccHHHHHHHHhccCC-CHHHHHHHHHHHHHHHH
Confidence            8887 799999999998  6 89999999999999995

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.71  E-value=2.9e-15  Score=142.58  Aligned_cols=296  Identities=14%  Similarity=0.208  Sum_probs=229.4

Q ss_pred             cCHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCC----------------cHHHHH-HcCCHHHHHHhhcCCCChHH
Q 016714           74 ESIPSMVQGVWS--EDPALQLEATTQFRKLLSIERSP----------------PIDEVI-KAGVVPRFVEFLGRHDMPQL  134 (384)
Q Consensus        74 ~~l~~lv~~l~s--~~~~~~~~a~~~l~~l~s~~~~~----------------~~~~~~-~~g~i~~Lv~lL~~~~~~~~  134 (384)
                      .+++.++..|+.  +|.+....++..|.++++.+..+                ..+.++ +.+.++.|+.+|+..+ ..+
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v  138 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV  138 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence            478999999985  46788888899998887754221                122333 5578999999999888 899


Q ss_pred             HHHHHHHHHHHhcCCch-hHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc
Q 016714          135 QFEAAWALTNVASGTSE-HTRVVIE-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN  212 (384)
Q Consensus       135 ~~~a~~~L~nl~~~~~~-~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~  212 (384)
                      +..++.+|..++...++ ..+.+.. .++++.|+.+|.++.+.+|..++..|.+++.+++.++..+.-.|+++.|+.++.
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999988777 6677775 489999999999999999999999999999999999999999999999999995


Q ss_pred             ccch---hHHHHHHHHHHhhhhcCCCCCC-hhhhhchHHHHHHhhccCCH------hHHHH---HHHHHHHhccCC----
Q 016714          213 EHSK---LSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIHLNDE------EVLTD---ACWALSYLSDGP----  275 (384)
Q Consensus       213 ~~~~---~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~~~~L~~lL~~~~~------~i~~~---a~~~l~~l~~~~----  275 (384)
                      ....   -.+...++.++.||.+.++..+ .....+++|.|..+|..++.      ....+   ++.++.-++..+    
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            4332   3578899999999999864333 22337899999999875432      23333   666666666552    


Q ss_pred             --hHHHHHHHHcCChHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcC---------chHHHHHHhccCCc
Q 016714          276 --NDKIQAVIEAGVCPRLVELLMHP--SATVLIPALRTVGNIVTGDDAQTQFVIDNG---------VLPCLYQLLTQNHK  342 (384)
Q Consensus       276 --~~~~~~~~~~g~~~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g---------~l~~L~~ll~~~~~  342 (384)
                        ..+...+.+.|+++.|++++...  ...++..|+.+++.++.+++...+.+.+..         ++..|..++.+...
T Consensus       299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~  378 (651)
T 3grl_A          299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP  378 (651)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence              23455788999999999999765  568899999999999999988777766532         33444455655546


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 016714          343 KSIKKEACWTISNITAGNRAQIQVHDSF  370 (384)
Q Consensus       343 ~~v~~~a~~~L~nl~~~~~~~i~~l~~~  370 (384)
                      ..+|-+|+.++..+..++++....++..
T Consensus       379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~  406 (651)
T 3grl_A          379 FVLRCAVLYCFQCFLYKNQKGQGEIVST  406 (651)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence            8899999999999999888654455443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.70  E-value=3.2e-15  Score=142.35  Aligned_cols=292  Identities=17%  Similarity=0.157  Sum_probs=229.9

Q ss_pred             cCHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CChHHHHHHHHHHHHHhcCCch
Q 016714           74 ESIPSMVQGVWSED-PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRH-DMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        74 ~~l~~lv~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      ++++.|+..+.+.. .+.+..|+..|+.+..    +. ...+-.++++.|+..|+.+ ++.++...++.+|.++...+++
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk----~y-~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSK----KY-RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT----TT-TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHH----Hh-HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            46889999888654 7899999999998742    22 2334456799999999764 3488999999999887765432


Q ss_pred             -----------------hHHHHH-hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCc-hhhHHHh-cCChHHHHHHh
Q 016714          152 -----------------HTRVVI-EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS-CRDLVLS-SGALMPLLAQL  211 (384)
Q Consensus       152 -----------------~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~i~~-~g~i~~L~~~l  211 (384)
                                       .++.++ +.+.++.|+.+|.+++..++-.++.+|..++...+. .++.++. .++++.|+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence                             223343 467899999999999999999999999999987776 7787884 48999999999


Q ss_pred             cccchhHHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhccCC----HhHHHHHHHHHHHhccCChHHHHHHHHcC
Q 016714          212 NEHSKLSMLRNATWTLSNFCRGKPPTPFEQV-KPALPILQRLIHLND----EEVLTDACWALSYLSDGPNDKIQAVIEAG  286 (384)
Q Consensus       212 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~~~L~~lL~~~~----~~i~~~a~~~l~~l~~~~~~~~~~~~~~g  286 (384)
                       .+..+.++-.++.+|.+|+.++++.+.... .++++.|+.++....    ..+..+++.++.+|..++..+...+.+.|
T Consensus       176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence             666677888999999999998755554444 799999999997654    47899999999999999988888899999


Q ss_pred             ChHHHHHhcCCCChh------hHH---HHHHHHHHhhcCC------hHHHHHHHHcCchHHHHHHhccCC-chhHHHHHH
Q 016714          287 VCPRLVELLMHPSAT------VLI---PALRTVGNIVTGD------DAQTQFVIDNGVLPCLYQLLTQNH-KKSIKKEAC  350 (384)
Q Consensus       287 ~~~~L~~lL~~~~~~------v~~---~a~~~l~nl~~~~------~~~~~~i~~~g~l~~L~~ll~~~~-~~~v~~~a~  350 (384)
                      .++.|..+|..+.+.      ...   .++.++.-++...      ......+.+.|+++.|++++..+. ...++.+|.
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            999999999754321      122   2566666666542      234457789999999999987652 567999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhCC
Q 016714          351 WTISNITAGNRAQIQVHDSFH  371 (384)
Q Consensus       351 ~~L~nl~~~~~~~i~~l~~~~  371 (384)
                      .+++.+..|++...+++.+..
T Consensus       335 ~tla~~irgN~~~Q~~fa~~~  355 (651)
T 3grl_A          335 NTVSEVIRGCQVNQDYFASVN  355 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCE
T ss_pred             HHHHHHHhCCHHHHHHHhhcc
Confidence            999999999999877776543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.68  E-value=3.9e-15  Score=132.25  Aligned_cols=227  Identities=14%  Similarity=0.115  Sum_probs=179.3

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      ..++.++..|.++++.++..|++.|.++..            .+.++.|+.+|.+++ +.++..|+++|+.+..... ..
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~   88 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE   88 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence            578999999999999999999999998732            236899999999988 9999999999999875321 11


Q ss_pred             HHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          154 RVVIEHGAVPMFV-QLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       154 ~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                      .     .+++.|. .++.++++.++..++++|+++....+..     ....++.|+..+ .++++.++..++++|.++..
T Consensus        89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITA-FDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence            1     1234444 2457789999999999999997443322     123567888888 77889999999999998764


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714          233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN  312 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (384)
                      .          ..+|.|..++.++++.++..++++|+.+....+         .+++.|+.+|.++++.++..|+++|++
T Consensus       158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            2          478999999999999999999999999854333         246788999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       313 l~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      +..           ...++.|...+.++ +  ++..|+++|+.+..
T Consensus       219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~  250 (280)
T 1oyz_A          219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD  250 (280)
T ss_dssp             TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC
T ss_pred             hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc
Confidence            862           34678888888765 3  89999999999864

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.63  E-value=2.4e-14  Score=127.10  Aligned_cols=201  Identities=16%  Similarity=0.162  Sum_probs=161.4

Q ss_pred             HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch
Q 016714          115 KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC  194 (384)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  194 (384)
                      ..+.++.|+..|.+++ +.++..|+++|+++..           .++++.|+.++.++++.++..|+++|+.+.......
T Consensus        21 ~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~   88 (280)
T 1oyz_A           21 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE   88 (280)
T ss_dssp             HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred             HHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence            5578999999999888 9999999999999863           246889999999999999999999999986543321


Q ss_pred             hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 016714          195 RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG  274 (384)
Q Consensus       195 ~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~  274 (384)
                      ..      .++.|...+..+.+..++..++++|..++...+    ......++.|..++.++++.++..++++|+++.. 
T Consensus        89 ~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-  157 (280)
T 1oyz_A           89 DN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-  157 (280)
T ss_dssp             HH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             hH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence            11      233343333367788999999999999985432    1224678999999999999999999999998753 


Q ss_pred             ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHH
Q 016714          275 PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTIS  354 (384)
Q Consensus       275 ~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~  354 (384)
                                .+.++.|+.+|.++++.++..|+++|+.+....+         .+++.|..++.++ ++.+|..|+|+|+
T Consensus       158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL~  217 (280)
T 1oyz_A          158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGLS  217 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence                      2578999999999999999999999999864333         2456788899888 8999999999999


Q ss_pred             HHhc
Q 016714          355 NITA  358 (384)
Q Consensus       355 nl~~  358 (384)
                      ++..
T Consensus       218 ~~~~  221 (280)
T 1oyz_A          218 YRKD  221 (280)
T ss_dssp             HTTC
T ss_pred             HhCC
Confidence            9873

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.61  E-value=4.2e-15  Score=152.38  Aligned_cols=274  Identities=14%  Similarity=0.170  Sum_probs=199.7

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .++.+++.+.++++.++..|++++..++... ...... .-.++++.++.++.+++ +.++..|+++|+.++...++...
T Consensus       175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~-~~~~~~-~~~~~l~~l~~~~~d~~-~~vr~~a~~~L~~l~~~~~~~~~  251 (852)
T 4fdd_A          175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISR-TQALML-HIDSFIENLFALAGDEE-PEVRKNVCRALVMLLEVRMDRLL  251 (852)
T ss_dssp             HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT-CHHHHT-SHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHHHHCHHHHG
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-cHHHHH-HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhCHHHHH
Confidence            3566677778888999999999998877542 111110 11256888888888887 99999999999999986655433


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHh--cCChHHHHHHhc----------cc--------
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLS--SGALMPLLAQLN----------EH--------  214 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~--~g~i~~L~~~l~----------~~--------  214 (384)
                      ..++ ++++.++..+.+.++.++..|++++..++.... .+..+..  ...++.++..+.          .+        
T Consensus       252 ~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d  329 (852)
T 4fdd_A          252 PHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD  329 (852)
T ss_dssp             GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred             HHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence            3333 478888889999999999999999999986542 2222111  124555655552          11        


Q ss_pred             ---chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHH
Q 016714          215 ---SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRL  291 (384)
Q Consensus       215 ---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L  291 (384)
                         .+..++..+..+|..++...+   ......++|.+..++.++++.++..++++++.++.+..+..... -.++++.+
T Consensus       330 d~~~~~~vr~~a~~~L~~la~~~~---~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l  405 (852)
T 4fdd_A          330 DTISDWNLRKCSAAALDVLANVYR---DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHL  405 (852)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHH
Confidence               112357788888888887543   23446788889999999999999999999999999876544332 24678999


Q ss_pred             HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          292 VELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       292 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      +..+.++++.++..|++++|+++...........-.++++.|...+.++ ++.++..|+|+|.+++.
T Consensus       406 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          406 IQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEE  471 (852)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999864221111111225778888888888 89999999999999996

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.60  E-value=7.5e-14  Score=118.49  Aligned_cols=188  Identities=21%  Similarity=0.202  Sum_probs=158.2

Q ss_pred             cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchh
Q 016714          116 AGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR  195 (384)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  195 (384)
                      .+.++.|+.+|.+++ +.++..|+++|+.+..           .++++.|+.+|.++++.++..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            457999999999888 9999999999998754           2678999999999999999999999999852      


Q ss_pred             hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 016714          196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP  275 (384)
Q Consensus       196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~  275 (384)
                           .+.++.|+..| .++++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 23678888988 77888999999999998864          2578999999999999999999999999843  


Q ss_pred             hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHH
Q 016714          276 NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN  355 (384)
Q Consensus       276 ~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  355 (384)
                               ...++.|..+|.++++.++..|+.+|+.+..           ..+++.|..++.++ ++.+|..|.++|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     2467889999999999999999999999853           23567788888888 89999999999999


Q ss_pred             HhcCC
Q 016714          356 ITAGN  360 (384)
Q Consensus       356 l~~~~  360 (384)
                      +...+
T Consensus       201 ~~~~~  205 (211)
T 3ltm_A          201 HKSFN  205 (211)
T ss_dssp             -----
T ss_pred             cCCCC
Confidence            98743

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.57  E-value=9.6e-14  Score=116.87  Aligned_cols=185  Identities=21%  Similarity=0.212  Sum_probs=158.1

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714          117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD  196 (384)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (384)
                      +..+.++++|.+++ +.++..|+++|+.+..           .++++.|+.+|.++++.++..++++|+.+..       
T Consensus        14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            56889999999999 9999999999998754           2578999999999999999999999999842       


Q ss_pred             HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh
Q 016714          197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN  276 (384)
Q Consensus       197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~  276 (384)
                          ...++.|+..| .++++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..   
T Consensus        75 ----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           75 ----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             ----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             ----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                13678888988 67889999999999998754          2578899999999999999999999999853   


Q ss_pred             HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHH
Q 016714          277 DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI  356 (384)
Q Consensus       277 ~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl  356 (384)
                              .+.++.|..++.++++.++..|+++|+.+.  .+         ..++.|..++.++ ++.+|..|.++|.++
T Consensus       137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG-TGFARKVAVNYLETH  196 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence                    356788999999999999999999999993  22         2566788888888 899999999999987


Q ss_pred             hc
Q 016714          357 TA  358 (384)
Q Consensus       357 ~~  358 (384)
                      ..
T Consensus       197 ~~  198 (201)
T 3ltj_A          197 KS  198 (201)
T ss_dssp             C-
T ss_pred             Hh
Confidence            53

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.56  E-value=2e-13  Score=115.78  Aligned_cols=188  Identities=19%  Similarity=0.176  Sum_probs=157.5

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      +.++.++..|.++++.++..|+..|..+-.            .+.++.|+.+|.+++ +.++..|+++|+.+..      
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence            568999999999999999999999997732            257999999999888 9999999999999864      


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                           .++++.|+.+|.++++.++..++++|+.+..           .+.++.|+.++ .++++.++..++++|..+.. 
T Consensus        80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-  141 (211)
T 3ltm_A           80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-  141 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC-
Confidence                 2578999999999999999999999999842           23678888888 78889999999999999853 


Q ss_pred             CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714          234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI  313 (384)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (384)
                               ...++.|..++.++++.++..++++|+.+..           ..+++.|..++.++++.++..|..+|+++
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                     2578999999999999999999999999843           23467788888889999999999999999


Q ss_pred             hcCCh
Q 016714          314 VTGDD  318 (384)
Q Consensus       314 ~~~~~  318 (384)
                      .....
T Consensus       202 ~~~~~  206 (211)
T 3ltm_A          202 KSFNH  206 (211)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            76543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.56  E-value=2.7e-14  Score=146.38  Aligned_cols=273  Identities=17%  Similarity=0.198  Sum_probs=197.2

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHH-H---HHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDE-V---IKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS  150 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~-~---~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~  150 (384)
                      .++.+++.+.++++..+..++.+|..++... .+.... .   .-.+++|.|++++.+++ +.++..|+++|.++....+
T Consensus       129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~  206 (852)
T 4fdd_A          129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRT  206 (852)
T ss_dssp             HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccc
Confidence            5788889999999999999999999887542 111110 0   01246788888888877 9999999999998887544


Q ss_pred             hhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714          151 EHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF  230 (384)
Q Consensus       151 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L  230 (384)
                      ......+ .+.++.+..++.++++.++..++++|+.++...+..-...+. ++++.++..+ .+.++.++..+++++..+
T Consensus       207 ~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~l  283 (852)
T 4fdd_A          207 QALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACEFWLTL  283 (852)
T ss_dssp             HHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHH
Confidence            3221111 246788888899999999999999999999765532111111 3566677776 567888999999999999


Q ss_pred             hcCCCCCC--hhhhhchHHHHHHhhc-----------c-----------CCHhHHHHHHHHHHHhccCChHHHHHHHHcC
Q 016714          231 CRGKPPTP--FEQVKPALPILQRLIH-----------L-----------NDEEVLTDACWALSYLSDGPNDKIQAVIEAG  286 (384)
Q Consensus       231 ~~~~~~~~--~~~~~~~~~~L~~lL~-----------~-----------~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g  286 (384)
                      +.......  ......++|.+...+.           .           .+..++..+..++..++....+.   +. ..
T Consensus       284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~  359 (852)
T 4fdd_A          284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PH  359 (852)
T ss_dssp             TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HH
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HH
Confidence            97531100  1123466777777762           2           12346888888888887643321   11 24


Q ss_pred             ChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          287 VCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       287 ~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      +++.+...+.++++.++..|++++|+++.+..+.....+ .++++.+...+.++ ++.+|..|+|++++++.
T Consensus       360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~  429 (852)
T 4fdd_A          360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDK-KALVRSITCWTLSRYAH  429 (852)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHH
Confidence            678888888999999999999999999988776544322 46889999999988 99999999999999996

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.53  E-value=3.3e-13  Score=128.20  Aligned_cols=276  Identities=15%  Similarity=0.191  Sum_probs=193.7

Q ss_pred             cCHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCCc
Q 016714           74 ESIPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD-MPQLQFEAAWALTNVASGTS  150 (384)
Q Consensus        74 ~~l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~  150 (384)
                      +.++.++..+.++  ++..+..|+..|..++........... -..+++.++.+|.++. ++.++..|+++++++...-.
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3578899999988  899999999999998753211111111 1247888999998872 38999999999999765322


Q ss_pred             hhHH-HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCc-hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHh
Q 016714          151 EHTR-VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS-CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLS  228 (384)
Q Consensus       151 ~~~~-~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~  228 (384)
                      +... .....-+++.+...+.++++.++..++++|..++...+. +...+ ..++++.++..+ .+.+..++..+++.+.
T Consensus       207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~-~~~~~~v~~~a~~~l~  284 (462)
T 1ibr_B          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAM-KSDIDEVALQGIEFWS  284 (462)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHH-HCSSHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-cCCchHHHHHHHHHHH
Confidence            1110 001111466777778888999999999999999865442 12211 114566666666 5667889999999988


Q ss_pred             hhhcCC-------------------CCCCh--hhhhchHHHHHHhhcc-------CCHhHHHHHHHHHHHhccCChHHHH
Q 016714          229 NFCRGK-------------------PPTPF--EQVKPALPILQRLIHL-------NDEEVLTDACWALSYLSDGPNDKIQ  280 (384)
Q Consensus       229 ~L~~~~-------------------~~~~~--~~~~~~~~~L~~lL~~-------~~~~i~~~a~~~l~~l~~~~~~~~~  280 (384)
                      .++...                   +....  .....++|.++..+..       ++..++..++.+|..++....+.  
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~--  362 (462)
T 1ibr_B          285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--  362 (462)
T ss_dssp             HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT--
T ss_pred             HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH--
Confidence            888641                   11111  1125677777777743       23578999999999988654321  


Q ss_pred             HHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          281 AVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD-AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       281 ~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                       +. ..+++.+...|.+++..++..|+.++|.++.+.. +.....+ ..+++.+...+.++ ++.+|..|+|+|++++.
T Consensus       363 -~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          363 -IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             -HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             -HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence             11 2467888889999999999999999999998654 2211112 46899999999998 89999999999999996

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.53  E-value=5.5e-13  Score=112.19  Aligned_cols=184  Identities=19%  Similarity=0.183  Sum_probs=157.2

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      +..+.+++.|.++++.++..|++.|..+-.            .+.++.|+++|.+++ +.++..|+++|+.+..      
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence            356899999999999999999999997632            246899999999888 9999999999999854      


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                           .++++.|+.+|.++++.++..|+++|+.+..           ...++.|+..+ .+.++.++..++++|..+.. 
T Consensus        75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-  136 (201)
T 3ltj_A           75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-  136 (201)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC-
Confidence                 2578999999999999999999999999842           13677888888 77789999999999999854 


Q ss_pred             CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714          234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI  313 (384)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (384)
                               ...++.|..++.++++.++..++++|+.+..  +         ..++.|..++.++++.++..|..+|+.+
T Consensus       137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence                     3678999999999999999999999999832  2         2467888888889999999999999987


Q ss_pred             h
Q 016714          314 V  314 (384)
Q Consensus       314 ~  314 (384)
                      -
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.53  E-value=1.6e-13  Score=134.70  Aligned_cols=274  Identities=17%  Similarity=0.154  Sum_probs=192.2

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      -.++.+.+.++++++.++..|++++.++..   .+-..     .++|.+..+|.+++ +.++..|+++++++...+++..
T Consensus        86 l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~  156 (591)
T 2vgl_B           86 MAVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV  156 (591)
T ss_dssp             TTHHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc
Confidence            356677777888899999888888876632   22222     24778999999888 9999999999999988666533


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                         .+.+.++.|..+|.++++.++..|+++|+.++.+++..+......+.+..|+..+ ...++..+..++.++..++..
T Consensus       157 ---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~  232 (591)
T 2vgl_B          157 ---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPK  232 (591)
T ss_dssp             ---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCC
T ss_pred             ---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCC
Confidence               2346789999999999999999999999999987764311111223466677777 445666677777777777633


Q ss_pred             CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC---ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714          234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG---PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV  310 (384)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~---~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l  310 (384)
                          .......+++.+..++++.++.++..|++++.++...   +++....+. ..+.+.|+.++. +++.++..|+.+|
T Consensus       233 ----~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l  306 (591)
T 2vgl_B          233 ----DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNI  306 (591)
T ss_dssp             ----SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred             ----ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHH
Confidence                1233467888999999999999999999999999752   233333322 345667776654 6788888899888


Q ss_pred             HHhhcCChHH------------------H----HHHH---Hc----CchHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 016714          311 GNIVTGDDAQ------------------T----QFVI---DN----GVLPCLYQLLTQNHKKSIKKEACWTISNITAGNR  361 (384)
Q Consensus       311 ~nl~~~~~~~------------------~----~~i~---~~----g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  361 (384)
                      +.++...++.                  .    +.+.   +.    .+++.|...+.+. +..+|++++|++++++...+
T Consensus       307 ~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~  385 (591)
T 2vgl_B          307 NLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVE  385 (591)
T ss_dssp             HHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhCh
Confidence            8886421110                  0    0111   11    2455666677677 88999999999999998655


Q ss_pred             HHHHHH
Q 016714          362 AQIQVH  367 (384)
Q Consensus       362 ~~i~~l  367 (384)
                      ...+.+
T Consensus       386 ~~~~~~  391 (591)
T 2vgl_B          386 QSAERC  391 (591)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            433333

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.45  E-value=2.1e-12  Score=126.54  Aligned_cols=267  Identities=11%  Similarity=0.089  Sum_probs=199.4

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .++.++..++++++.++..|+..+..+...-............++|.+..++++++ +.++..++++|+.++..-..  .
T Consensus       282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~--~  358 (588)
T 1b3u_A          282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGK--D  358 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCH--H
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhH--h
Confidence            46777788888888999999999988876542222222334567899999999888 99999999999998752111  1


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~  234 (384)
                       ......+|.+..++.+++++++..++.+|+.++.....  +. .....++.+...+ .+.+..++..++.++..++..-
T Consensus       359 -~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~-~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~  433 (588)
T 1b3u_A          359 -NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQ-LSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQL  433 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HH-HHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHc
Confidence             11234789999999999999999999999988753321  11 1233667777777 6677888999999999888642


Q ss_pred             CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714          235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (384)
                      +..  .....++|.+..+|.+++..++..++.+++.++......   .....+++.|..++.+++..++..++++++.++
T Consensus       434 ~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~  508 (588)
T 1b3u_A          434 GVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS  508 (588)
T ss_dssp             CGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred             CHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            211  122467899999999999999999999999987642221   123467888998888889999999999999997


Q ss_pred             cCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          315 TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       315 ~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .....   ......+++.|...+.++ ++.+|..++|+++.++.
T Consensus       509 ~~~~~---~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          509 EVCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGG
T ss_pred             HhcCH---HHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHH
Confidence            53221   123346889999999988 89999999999999996

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.43  E-value=5.5e-12  Score=123.49  Aligned_cols=265  Identities=17%  Similarity=0.153  Sum_probs=196.7

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .++.+...+.++++.++..|+..+.++....  +.  ..+...++|.+..+..+++ +..+..|+.+++.++...+..  
T Consensus        88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~--~~--~~~~~~l~~~l~~l~~~~~-~~~R~~a~~~l~~~~~~~~~~--  160 (588)
T 1b3u_A           88 LLPPLESLATVEETVVRDKAVESLRAISHEH--SP--SDLEAHFVPLVKRLAGGDW-FTSRTSACGLFSVCYPRVSSA--  160 (588)
T ss_dssp             GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTS--CH--HHHHHTHHHHHHHHHTCSS-HHHHHHHGGGHHHHTTTSCHH--
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHC--CH--HHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhcCHH--
Confidence            3566666667888999999999999997643  21  2233456777777777766 899999999999988754432  


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~  234 (384)
                       . ...+++.+..++.++++.++..++.+|+.++...+.  + ......++.+..++ .+.+..++..++.+|..++...
T Consensus       161 -~-~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~  234 (588)
T 1b3u_A          161 -V-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--D-NVKSEIIPMFSNLA-SDEQDSVRLLAVEACVNIAQLL  234 (588)
T ss_dssp             -H-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--H-HHHHTHHHHHHHHH-TCSCHHHHTTHHHHHHHHHHHS
T ss_pred             -H-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH--H-hHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhC
Confidence             1 234678888899999999999999999999865432  1 12234677777777 6667889999999999988753


Q ss_pred             CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714          235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (384)
                      +.  ......++|.+..++.++++.++..++.+++.++......   .....+++.+..++.++++.++..|+.+++.++
T Consensus       235 ~~--~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  309 (588)
T 1b3u_A          235 PQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC  309 (588)
T ss_dssp             CH--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             CH--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc---cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            21  2334668889999999999999999999999997642211   123467899999999999999999999999998


Q ss_pred             cCChHH-HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          315 TGDDAQ-TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       315 ~~~~~~-~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ...... ........++|.+..++.++ ++.+|..++|+|+.++.
T Consensus       310 ~~~~~~~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~~  353 (588)
T 1b3u_A          310 ENLSADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLSP  353 (588)
T ss_dssp             HTSCTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHH
T ss_pred             HHhChhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            653321 11122235778888888877 78888888888888875

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.42  E-value=1.6e-11  Score=120.43  Aligned_cols=259  Identities=17%  Similarity=0.182  Sum_probs=186.6

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      ..++.+++.+++++..++..+...+..++...  +  +. . .-+++.+.+-|.+++ +.++..|+.+|+++..  ++..
T Consensus        49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~--e~-~-~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~  119 (591)
T 2vgl_B           49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ--P--DM-A-IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT  119 (591)
T ss_dssp             GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS--H--HH-H-HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--c--hH-H-HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence            35688889999999999888877777765421  1  11 1 235678888888888 9999999999999863  4433


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      ..     .++.+..++.++++.++..|++++++++..++.   .+...+.++.+..+| .+.++.++.+|+++|..++..
T Consensus       120 ~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          120 EY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred             HH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence            32     357889999999999999999999999976654   233346778888888 688899999999999999987


Q ss_pred             CCCC-ChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714          234 KPPT-PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN  312 (384)
Q Consensus       234 ~~~~-~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (384)
                      .+.. ......+.++.|+..+...++..+..++.+++.++..++....     .+++.+..+|.+.++.++..|+++++.
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~  265 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMK  265 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred             CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            6543 2333356677788888888999999999999999866554332     457888889999999999999999999


Q ss_pred             hhcC---ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          313 IVTG---DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       313 l~~~---~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      +...   +++..+.+. ..+.+.|+.++. + ++.+|..|+.++..++.
T Consensus       266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~  311 (591)
T 2vgl_B          266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQ  311 (591)
T ss_dssp             SCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHH
Confidence            8742   233332222 123344444332 3 44555555555555543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.39  E-value=6.3e-11  Score=116.71  Aligned_cols=257  Identities=16%  Similarity=0.110  Sum_probs=179.4

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      ....+++.+.+++...+.-+.-.+..++..  ++....    -+++.|.+-|.+++ +.++..|+++|+++..  ++   
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~----l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~---  138 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHL----LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SE---  138 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHH----HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HH---
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHH----HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HH---
Confidence            567788888999988888777777777543  221111    24778888888888 8999999999999974  33   


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~  234 (384)
                       +. ...++.+..+|.++++.++..|+.+++++....|...     .+.++.+..++ .+.++.++..++++|..++...
T Consensus       139 -~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~  210 (618)
T 1w63_A          139 -MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCERS  210 (618)
T ss_dssp             -HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSH
T ss_pred             -HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhC
Confidence             22 2467888999999999999999999999987665432     14667777777 6778899999999999998764


Q ss_pred             CCCChhhhhchHHHHHHhhcc---------------CCHhHHHHHHHHHHHhccCChHHHHH-------HH---------
Q 016714          235 PPTPFEQVKPALPILQRLIHL---------------NDEEVLTDACWALSYLSDGPNDKIQA-------VI---------  283 (384)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~---------------~~~~i~~~a~~~l~~l~~~~~~~~~~-------~~---------  283 (384)
                      +.. ......++|.++.+|..               .++..+..++.+|+.++..+++....       +.         
T Consensus       211 ~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~  289 (618)
T 1w63_A          211 PDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNV  289 (618)
T ss_dssp             HHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTH
T ss_pred             hHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccch
Confidence            321 22335667766666542               46777777888887777654321110       00         


Q ss_pred             -------------H--------cCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCc
Q 016714          284 -------------E--------AGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHK  342 (384)
Q Consensus       284 -------------~--------~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~  342 (384)
                                   .        ..++..|..+|.++++.++..|+.+|+.++...+...     ....+.+...+.++ +
T Consensus       290 ~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~-d  363 (618)
T 1w63_A          290 GNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDL-D  363 (618)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSS-C
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCC-C
Confidence                         0        0245677777888888899999999998886544322     12445666667666 6


Q ss_pred             hhHHHHHHHHHHHHhc
Q 016714          343 KSIKKEACWTISNITA  358 (384)
Q Consensus       343 ~~v~~~a~~~L~nl~~  358 (384)
                      ..+|+.|..+|..++.
T Consensus       364 ~~Ir~~alelL~~l~~  379 (618)
T 1w63_A          364 VSIKRRAMELSFALVN  379 (618)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             hhHHHHHHHHHHHHcc
Confidence            7777777777777775

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.38  E-value=8.5e-12  Score=124.16  Aligned_cols=215  Identities=14%  Similarity=0.128  Sum_probs=158.6

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHhhhCC-CCch
Q 016714          117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFV-QLLSSGSDDVREQAVWALGNVAGD-SPSC  194 (384)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~-~~~~  194 (384)
                      .++| +++.|++++ +..|..|+++|+||+. ++..+..+...|++..++ .+|.+++.+++..|+++|+||+.+ ++..
T Consensus        35 ~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           35 KILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             TTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            3444 567789888 8999999999999998 588888899989887765 578889999999999999999965 4567


Q ss_pred             hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 016714          195 RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG  274 (384)
Q Consensus       195 ~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~  274 (384)
                      .+.+...|++++|..++..         ....+..+........ ......+           .++...++++|++|+.+
T Consensus       112 ~~~l~~~~il~~L~~~l~~---------~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e~  170 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKA---------VLETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLALA  170 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHH---------HHHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHh---------hHHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHhC
Confidence            7888899999999999832         1222222222110000 0001111           23455677888889888


Q ss_pred             ChHHHHHHHHcCChHHHHHhcCC---CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchH---HHHHHhccCCchhHHHH
Q 016714          275 PNDKIQAVIEAGVCPRLVELLMH---PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLP---CLYQLLTQNHKKSIKKE  348 (384)
Q Consensus       275 ~~~~~~~~~~~g~~~~L~~lL~~---~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~---~L~~ll~~~~~~~v~~~  348 (384)
                      +......+...+.++.|+..|.+   ....++..|+.+|.+++..++...+.+.+.+...   .+..+.. . ....+..
T Consensus       171 s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~~~~l  248 (684)
T 4gmo_A          171 RDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDPRAVM  248 (684)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCTTHHH
T ss_pred             CHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcHHHHH
Confidence            88888888888999999999843   2457999999999999999999988888876533   3333333 3 3456889


Q ss_pred             HHHHHHHHh
Q 016714          349 ACWTISNIT  357 (384)
Q Consensus       349 a~~~L~nl~  357 (384)
                      +|+++.|+.
T Consensus       249 a~giL~Ni~  257 (684)
T 4gmo_A          249 ACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhHh
Confidence            999999985

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.36  E-value=2.3e-11  Score=124.78  Aligned_cols=274  Identities=19%  Similarity=0.249  Sum_probs=193.8

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHH-HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           76 IPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPID-EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        76 l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      ++.+...+.++  +..++..|+.++..++..- ..... ......+++.+...+.+++ ++++..++++|..++...+..
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence            44455666665  5789999999999887531 11110 1111236777888887777 899999999999998866655


Q ss_pred             HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC------------------chhhHHH--hcCChHHHHHHhc
Q 016714          153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP------------------SCRDLVL--SSGALMPLLAQLN  212 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~------------------~~~~~i~--~~g~i~~L~~~l~  212 (384)
                      ....+...+++.++..+.+.++.++..+++++.+++....                  .......  -...++.++..+.
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~  331 (876)
T 1qgr_A          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  331 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence            4455544678888888888899999999999998874310                  0001100  0224666777774


Q ss_pred             c------cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-HHHHHHHHc
Q 016714          213 E------HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN-DKIQAVIEA  285 (384)
Q Consensus       213 ~------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~-~~~~~~~~~  285 (384)
                      .      +.+..++..+..+|..++...+   ...+..++|.+...+.+.++.++..++++++.++.+.. +...... .
T Consensus       332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~  407 (876)
T 1qgr_A          332 KQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I  407 (876)
T ss_dssp             CCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence            2      2245688888899988887543   13356778888888889999999999999999998754 3333322 3


Q ss_pred             CChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH--HHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          286 GVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQT--QFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       286 g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~--~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .+++.++..|.++++.++..|++++++++...+...  ...+ ..+++.+...+.++  +.++..|+|++++++.
T Consensus       408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE--PRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999987543211  0111 24677788888663  7899999999999985

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.33  E-value=4.6e-11  Score=122.61  Aligned_cols=277  Identities=15%  Similarity=0.178  Sum_probs=193.2

Q ss_pred             CHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCCch
Q 016714           75 SIPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD-MPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        75 ~l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      .++.++..+.++  ++..+..++.++..++..- .+..-.-.-..+++.+...+.+++ ++.++..|+++|++++..-..
T Consensus       129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (876)
T 1qgr_A          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-CHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            478888888888  8999999999999887532 111000012346777888887762 389999999999998763221


Q ss_pred             hH-HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714          152 HT-RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF  230 (384)
Q Consensus       152 ~~-~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L  230 (384)
                      .. ........++.+...+.+++.+++..++.+|+.++...+..-...+...+++.++..+ .+.++.++..+++++..+
T Consensus       208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l  286 (876)
T 1qgr_A          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence            11 0111112577777888888999999999999999865543212222224667777766 566778888999888888


Q ss_pred             hcCC-------------------CCCCh--hhhhchHHHHHHhhcc-------CCHhHHHHHHHHHHHhccCChHHHHHH
Q 016714          231 CRGK-------------------PPTPF--EQVKPALPILQRLIHL-------NDEEVLTDACWALSYLSDGPNDKIQAV  282 (384)
Q Consensus       231 ~~~~-------------------~~~~~--~~~~~~~~~L~~lL~~-------~~~~i~~~a~~~l~~l~~~~~~~~~~~  282 (384)
                      +...                   +....  .....++|.++..+..       +++.++..+..++..++....+.   +
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~  363 (876)
T 1qgr_A          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred             HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---h
Confidence            7531                   11111  1225677777777742       34678899999999887643321   1


Q ss_pred             HHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714          283 IEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD-AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG  359 (384)
Q Consensus       283 ~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  359 (384)
                      + ..+++.+...+.++++.++..|++++|.++.+.. +.....+ ..+++.+...+.++ ++.+|..|+|++++++..
T Consensus       364 ~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~  438 (876)
T 1qgr_A          364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHh
Confidence            1 2457778888888999999999999999998754 4333333 35889999999988 899999999999999973

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.30  E-value=2.1e-11  Score=124.86  Aligned_cols=274  Identities=12%  Similarity=0.148  Sum_probs=188.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh--H
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH--T  153 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~--~  153 (384)
                      ++.+...+.+.++..+..|+.++..++.+.........+. .+++.++..+.+++ +.++..++|+|+.++..-...  .
T Consensus       371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~  448 (861)
T 2bpt_A          371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP  448 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence            3445556678889999999999998875431122222222 57899999998887 999999999999998631110  0


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-----CchhhHHHhcCChHHHHHHhcc-cchhHHHHHHHHHH
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS-----PSCRDLVLSSGALMPLLAQLNE-HSKLSMLRNATWTL  227 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~i~~~g~i~~L~~~l~~-~~~~~~~~~a~~~L  227 (384)
                      .... ..+++.++..+.++ +.++..|+|+|++++...     ......+  ..+++.|+..+.. +.+..++..+++++
T Consensus       449 ~~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al  524 (861)
T 2bpt_A          449 QQHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL  524 (861)
T ss_dssp             TTTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence            0111 13578888888775 899999999999997532     2122222  2256677777743 33467899999999


Q ss_pred             hhhhcCCCCCChhhhhchHHHHHHhhccC---------------CHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHH
Q 016714          228 SNFCRGKPPTPFEQVKPALPILQRLIHLN---------------DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLV  292 (384)
Q Consensus       228 ~~L~~~~~~~~~~~~~~~~~~L~~lL~~~---------------~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~  292 (384)
                      ..++...+.........++|.++..+...               ...++..++.+|..++........... ..+++.+.
T Consensus       525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~  603 (861)
T 2bpt_A          525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFF  603 (861)
T ss_dssp             HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHH
T ss_pred             HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHH
Confidence            99998765444444566777777766531               345778899999998865443221111 24677788


Q ss_pred             HhcCCCCh-hhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          293 ELLMHPSA-TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       293 ~lL~~~~~-~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ..+.+.+. .++..++.+++.++..........+. .+++.+...+.+. ++.++..|+++++.++.
T Consensus       604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~  668 (861)
T 2bpt_A          604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISN  668 (861)
T ss_dssp             HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHH
T ss_pred             HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHH
Confidence            88877766 89999999999998654333222232 3788899999776 78899999999999986

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.29  E-value=4.8e-11  Score=122.25  Aligned_cols=272  Identities=18%  Similarity=0.195  Sum_probs=190.0

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHH-HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           76 IPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPID-EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        76 l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      ++.+...+.++  ++.++..|+.++..++..- ..... ......+++.+..++.+++ +.++..++.+|..++...++.
T Consensus       181 l~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~-~~~r~~a~~~l~~l~~~~~~~  258 (861)
T 2bpt_A          181 LIAIVQGAQSTETSKAVRLAALNALADSLIFI-KNNMEREGERNYLMQVVCEATQAED-IEVQAAAFGCLCKIMSKYYTF  258 (861)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHHTCSC-HHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHccChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666  7889999999999875421 10000 0011235777778887777 899999999999998754443


Q ss_pred             HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC-----------------c-hhhHHHhcCChHHHHHHhccc
Q 016714          153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP-----------------S-CRDLVLSSGALMPLLAQLNEH  214 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-----------------~-~~~~i~~~g~i~~L~~~l~~~  214 (384)
                      ....+...+++.+...+.+.++.++..|+.++..++....                 . .+.. . ..+++.++..+...
T Consensus       259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~il~~ll~~l~~~  336 (861)
T 2bpt_A          259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS-I-KDVVPNLLNLLTRQ  336 (861)
T ss_dssp             CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH-H-HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHH-H-HHHHHHHHHHHHhc
Confidence            3333332567778888888999999999999999875321                 0 1111 1 23567777777432


Q ss_pred             ------chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-HHHHHHHHcCC
Q 016714          215 ------SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN-DKIQAVIEAGV  287 (384)
Q Consensus       215 ------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~-~~~~~~~~~g~  287 (384)
                            .+..++..+..+|..++...+   ......++|.+...+.+.++.++..++++++.++.+.. ......+. .+
T Consensus       337 ~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~i  412 (861)
T 2bpt_A          337 NEDPEDDDWNVSMSAGACLQLFAQNCG---NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QA  412 (861)
T ss_dssp             CCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HH
T ss_pred             ccccccccCcHHHHHHHHHHHHHHHcc---HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HH
Confidence                  234678889999988887533   23345677888888888999999999999999998753 43333333 57


Q ss_pred             hHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH--HHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQT--QFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~--~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ++.++..+.++++.++..+++++|.++.......  ... -..+++.+...+.+.  +.++..|+|++.+++.
T Consensus       413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~  482 (861)
T 2bpt_A          413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH--PKVATNCSWTIINLVE  482 (861)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC--hHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999985421110  001 123577788888654  7899999999999986

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.27  E-value=4e-11  Score=118.09  Aligned_cols=255  Identities=16%  Similarity=0.092  Sum_probs=182.9

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .+..+.+.|+++++.++..|++++.++..    +   .+. ..+++.+..+|.+++ +.++..|+.++.++...+++...
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~  178 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME  178 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence            56777888889999999999999998842    1   222 346888999999988 99999999999999887665432


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc--------------cchhHHH
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE--------------HSKLSML  220 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~--------------~~~~~~~  220 (384)
                           +.++.+..+|.+.++.++..|+++|+.++..++.....+.  ..++.++..|.+              ..++-.+
T Consensus       179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q  251 (618)
T 1w63_A          179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ  251 (618)
T ss_dssp             -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred             -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence                 6788899999999999999999999999877653212221  355666655532              1244445


Q ss_pred             HHHHHHHhhhhcCCCCC--------------------------------------ChhhhhchHHHHHHhhccCCHhHHH
Q 016714          221 RNATWTLSNFCRGKPPT--------------------------------------PFEQVKPALPILQRLIHLNDEEVLT  262 (384)
Q Consensus       221 ~~a~~~L~~L~~~~~~~--------------------------------------~~~~~~~~~~~L~~lL~~~~~~i~~  262 (384)
                      ..++.+|..++...|..                                      .......+++.|..+|.+++++++.
T Consensus       252 ~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~  331 (618)
T 1w63_A          252 VRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRY  331 (618)
T ss_dssp             HHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHH
Confidence            55555555555432110                                      0011123556677778888888888


Q ss_pred             HHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCc
Q 016714          263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHK  342 (384)
Q Consensus       263 ~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~  342 (384)
                      .++.+|..++...+..    + ......++..|.+++..++..|+.++..++....  .+.     +++.|...+.+. +
T Consensus       332 ~aL~~L~~i~~~~p~~----~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d  398 (618)
T 1w63_A          332 VALTSLLKTVQTDHNA----V-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-E  398 (618)
T ss_dssp             HHHHHHHHHHHHHHHH----H-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-C
T ss_pred             HHHHHHHHHHhhCHHH----H-HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-C
Confidence            8888888887543321    2 2346788888999999999999999999987533  222     345677777777 8


Q ss_pred             hhHHHHHHHHHHHHhc
Q 016714          343 KSIKKEACWTISNITA  358 (384)
Q Consensus       343 ~~v~~~a~~~L~nl~~  358 (384)
                      .++|.+++.+++.++.
T Consensus       399 ~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          399 PEFKADCASGIFLAAE  414 (618)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999996

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.20  E-value=1e-10  Score=124.38  Aligned_cols=271  Identities=14%  Similarity=0.139  Sum_probs=197.3

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .++.++..+.+.|++.+..|...|.+.+... ......-....+++.+++.|.+++ +.+|..|+.+|+.++...++   
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~---   81 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE---   81 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH---
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH---
Confidence            4788999999999999999999999877543 111111112346888999998777 99999999999999876444   


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch------hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHh
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC------RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLS  228 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~------~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~  228 (384)
                      ..+ ..+++.|+..+.++++.+|..|+.+|+.++......      ... .-...++.|+..+.++.+..++..++.+|.
T Consensus        82 ~~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~  159 (1230)
T 1u6g_C           82 YQV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA  159 (1230)
T ss_dssp             HHH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            111 236788888888888899999999999998543321      111 122367888888843567889999999999


Q ss_pred             hhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC-ChhhHHHHH
Q 016714          229 NFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP-SATVLIPAL  307 (384)
Q Consensus       229 ~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~-~~~v~~~a~  307 (384)
                      .++...+..-......+++.+...|.++++.++..++.+|+.++....+..    -..+++.++..|.+. +..++..++
T Consensus       160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~~~~~~r~~a~  235 (1230)
T 1u6g_C          160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYI  235 (1230)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhccCCchhHHHHHH
Confidence            999643332223447788889999999999999999999999997654321    124577788777543 346778889


Q ss_pred             HHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          308 RTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       308 ~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .+++.++...+......+ ..+++.+...+.+. ++.+|..+.+++..++.
T Consensus       236 ~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~  284 (1230)
T 1u6g_C          236 QCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVR  284 (1230)
T ss_dssp             HHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            999998765433211111 36889999999887 88999999999999986

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.20  E-value=6.3e-11  Score=112.39  Aligned_cols=236  Identities=19%  Similarity=0.211  Sum_probs=166.1

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHH-HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           76 IPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPID-EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        76 l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      ++.++..+.++  ++.++..|++++..++..- .+... .....-+++.+...+.+++ +.++..++++|..++...++.
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~-~~vr~~~~~~l~~l~~~~~~~  251 (462)
T 1ibr_B          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY  251 (462)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence            56667777777  6899999999999876421 10000 0111124677777777777 899999999999998755443


Q ss_pred             HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC------------------CchhhHHH--hcCChHHHHHHhc
Q 016714          153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS------------------PSCRDLVL--SSGALMPLLAQLN  212 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~------------------~~~~~~i~--~~g~i~~L~~~l~  212 (384)
                      ....+..++++.++..+.+.++.++..+++++..++...                  ......+.  -...++.++..+.
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~  331 (462)
T 1ibr_B          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  331 (462)
T ss_dssp             CTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHH
Confidence            222222256777888888899999999999999987531                  00111110  0224566666663


Q ss_pred             cc------chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-HHHHHHHHc
Q 016714          213 EH------SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN-DKIQAVIEA  285 (384)
Q Consensus       213 ~~------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~-~~~~~~~~~  285 (384)
                      ..      .+..++..++.+|..++...+.   .....++|.+...+.++++.++..++.+++.++.+.. +.....+ .
T Consensus       332 ~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~  407 (462)
T 1ibr_B          332 KQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I  407 (462)
T ss_dssp             CCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-T
T ss_pred             hcccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-H
Confidence            22      2346888999999999987542   3446788889999999999999999999999998654 2111111 4


Q ss_pred             CChHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 016714          286 GVCPRLVELLMHPSATVLIPALRTVGNIVTGD  317 (384)
Q Consensus       286 g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~  317 (384)
                      .+++.++..|.++++.++..|+++|++++...
T Consensus       408 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             THHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999998643

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.12  E-value=1.4e-10  Score=115.50  Aligned_cols=194  Identities=12%  Similarity=0.083  Sum_probs=144.8

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHH-HhhcCCCChHHHHHHHHHHHHHhcC-Cchh
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFV-EFLGRHDMPQLQFEAAWALTNVASG-TSEH  152 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv-~lL~~~~~~~~~~~a~~~L~nl~~~-~~~~  152 (384)
                      .+..+++.|+|+++..|..|+.+|.+++..  ......+...|++..++ .+|.+++ .+++.+|+++|.||+.+ .++.
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~D~~-~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLTDNN-IDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTTCSC-HHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhhcCchH
Confidence            456788899999999999999999999852  56667788888888765 5677777 99999999999999864 4788


Q ss_pred             HHHHHhcCChHHHHHhhcCCC---------------------HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHh
Q 016714          153 TRVVIEHGAVPMFVQLLSSGS---------------------DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQL  211 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~---------------------~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l  211 (384)
                      ...+++.|++++|..++....                     ..+.++++++|+++|..+....+.+...+.++.|+..|
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence            899999999999999885310                     24566788999999977776777788889999999988


Q ss_pred             cccc--hhHHHHHHHHHHhhhhcCCCCCChhhh-h---chHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 016714          212 NEHS--KLSMLRNATWTLSNFCRGKPPTPFEQV-K---PALPILQRLIHLNDEEVLTDACWALSYLS  272 (384)
Q Consensus       212 ~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~-~---~~~~~L~~lL~~~~~~i~~~a~~~l~~l~  272 (384)
                      ....  ..++...++.+|..++...+....... .   .++..+..+..+. ...+..+++.+.|+.
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~-~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT-DPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS-CTTHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC-cHHHHHHHHHHHhHh
Confidence            4332  467999999999999997533222222 1   1233333333333 334667778887763

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.10  E-value=4.2e-08  Score=96.40  Aligned_cols=267  Identities=14%  Similarity=0.141  Sum_probs=179.3

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      .....+++.+.+++...+.-+.-.+..++..+  +  +.++  =+++.+.+=|.+++ +.++-.|+++|+++..  ++  
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~--e~~~--L~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e--  142 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--S--ELIR--LINNAIKNDLASRN-PTFMGLALHCIANVGS--RE--  142 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--H--HHHH--HHHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HH--
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--c--HHHH--HHHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HH--
Confidence            35788899999999988888888887765432  2  2111  13667777788888 9999999999999965  44  


Q ss_pred             HHHHhcCChHHHHHhh--cCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714          154 RVVIEHGAVPMFVQLL--SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~  231 (384)
                        +.+ ..++.+..++  .+.++.|+..|+.++.++....|..   +-..+.++.+..+| .+.++.++.+++.++..++
T Consensus       143 --~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~  215 (621)
T 2vgl_A          143 --MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA  215 (621)
T ss_dssp             --HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred             --HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence              222 4678889999  8899999999999999998766532   22246788888888 7788899999999999998


Q ss_pred             cCCCCCChhhhhchHHHHH----HhhccC-------------CHhHHHHHHHHHHHhccCC-hHHHHH-------HH---
Q 016714          232 RGKPPTPFEQVKPALPILQ----RLIHLN-------------DEEVLTDACWALSYLSDGP-NDKIQA-------VI---  283 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~----~lL~~~-------------~~~i~~~a~~~l~~l~~~~-~~~~~~-------~~---  283 (384)
                      ...+.    .....+|.++    +++...             ++..+...+..+..++..+ ++....       ++   
T Consensus       216 ~~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~  291 (621)
T 2vgl_A          216 QKNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKA  291 (621)
T ss_dssp             HHCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HhChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            76432    1122333322    222211             4555666666655555421 111110       00   


Q ss_pred             -----------------------------------HcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcC
Q 016714          284 -----------------------------------EAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNG  328 (384)
Q Consensus       284 -----------------------------------~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g  328 (384)
                                                         -..++..|..+|.+.++.++..|+.+|..++...+.. . ++ ..
T Consensus       292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~~  368 (621)
T 2vgl_A          292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-KT  368 (621)
T ss_dssp             HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-HT
T ss_pred             ccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-HH
Confidence                                               0124566677777778888888888888887655321 1 22 23


Q ss_pred             chHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 016714          329 VLPCLYQLLT-QNHKKSIKKEACWTISNITAGNRAQIQVHD  368 (384)
Q Consensus       329 ~l~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~  368 (384)
                      ..+.++..+. ++ +..+|..|.-++..++.  +..++.++
T Consensus       369 ~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv~~Iv  406 (621)
T 2vgl_A          369 HIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNAQQIV  406 (621)
T ss_dssp             THHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHHHHHH
T ss_pred             HHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhHHHHH
Confidence            5667778888 77 88999999999998884  34444443

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.90  E-value=3.6e-07  Score=89.77  Aligned_cols=218  Identities=16%  Similarity=0.151  Sum_probs=154.4

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc----CC-------------CHHHHHH
Q 016714          117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS----SG-------------SDDVREQ  179 (384)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~----~~-------------~~~v~~~  179 (384)
                      +.++.+.++|.+++ +.++..|+.+|..++..+++.-.     ..+|.++..|.    ..             ++-.+..
T Consensus       187 ~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~  260 (621)
T 2vgl_A          187 DWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK  260 (621)
T ss_dssp             SCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred             hHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence            78999999998877 99999999999999886554211     23444444332    21             6788999


Q ss_pred             HHHHHHhhhCC-CCchhhHHHhcCChHHHHHHhc--------ccchh--HHHHHHHHHHhhhhcCCCCCChhhhhchHHH
Q 016714          180 AVWALGNVAGD-SPSCRDLVLSSGALMPLLAQLN--------EHSKL--SMLRNATWTLSNFCRGKPPTPFEQVKPALPI  248 (384)
Q Consensus       180 a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~~l~--------~~~~~--~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~  248 (384)
                      .+..|+.++.. ++..++.+.+  .+..++..+.        ++.+.  .+.-.++.++..+..     .......++..
T Consensus       261 il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-----~~~~~~~~~~~  333 (621)
T 2vgl_A          261 LLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-----EPNLLVRACNQ  333 (621)
T ss_dssp             HHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-----cHHHHHHHHHH
Confidence            99999998863 3444443332  3334443321        12233  677788888887752     23455678888


Q ss_pred             HHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 016714          249 LQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM-HPSATVLIPALRTVGNIVTGDDAQTQFVIDN  327 (384)
Q Consensus       249 L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~  327 (384)
                      |..+|.+++++++.-++.+|..++...+. ...+  ......++..|. +++..++..++.++..++.  +.....    
T Consensus       334 L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~----  404 (621)
T 2vgl_A          334 LGQFLQHRETNLRYLALESMCTLASSEFS-HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ----  404 (621)
T ss_dssp             HHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH----
T ss_pred             HHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH----
Confidence            99999999999999999999999877542 1122  245778888888 8899999999999999984  344443    


Q ss_pred             CchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          328 GVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       328 g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                       ++..|...+... +.+++.+++..++.++.
T Consensus       405 -Iv~eL~~yl~~~-d~~~~~~~v~~I~~la~  433 (621)
T 2vgl_A          405 -IVAEMLSYLETA-DYSIREEIVLKVAILAE  433 (621)
T ss_dssp             -HHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence             344577777777 78899998888888874

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.88  E-value=9.4e-07  Score=70.04  Aligned_cols=216  Identities=15%  Similarity=0.183  Sum_probs=165.4

Q ss_pred             HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCCCc
Q 016714          115 KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNVAGDSPS  193 (384)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~  193 (384)
                      +..++..++.+|+++- ..++..|+.++.+++...++.....+     ..|+.+++ ++...+-.....++|.++.-.|+
T Consensus        30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            4567899999998877 89999999999999998777655443     45666654 56777878888999999977764


Q ss_pred             hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 016714          194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSD  273 (384)
Q Consensus       194 ~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~  273 (384)
                      .-+     +.+|.+..-+ .-.++.+..+..++|..+.+..|    ....+++.-+..++.+.|..=+..++..|+.+..
T Consensus       104 ~v~-----~vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          104 LVK-----SMIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HHH-----HHHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred             HHH-----hhHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            211     2455555555 44589999999999999998765    3456777788889999887777777777777776


Q ss_pred             CChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHH
Q 016714          274 GPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI  353 (384)
Q Consensus       274 ~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L  353 (384)
                      +....+     ...+|.|..+|.+.+.-++..|..+|++++..++.....+.      .-+.=+.+. +..+++...-.|
T Consensus       174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~-S~lv~~~V~egL  241 (253)
T 2db0_A          174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT-SSLVNKTVKEGI  241 (253)
T ss_dssp             TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS-CHHHHHHHHHHH
T ss_pred             cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc-HHHHHHHHHHHH
Confidence            665544     35689999999999999999999999999999988655333      234456666 778888888888


Q ss_pred             HHHhc
Q 016714          354 SNITA  358 (384)
Q Consensus       354 ~nl~~  358 (384)
                      +.++.
T Consensus       242 ~rl~l  246 (253)
T 2db0_A          242 SRLLL  246 (253)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87774

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.87  E-value=3.6e-07  Score=72.38  Aligned_cols=190  Identities=15%  Similarity=0.225  Sum_probs=155.2

Q ss_pred             hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCC
Q 016714          158 EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT  237 (384)
Q Consensus       158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~  237 (384)
                      +...+..++.+|.++--.++.+|+..+.+++...|...+.     .+..|+.++..+....+......++..++..+|  
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--  102 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--  102 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence            3457888999999888889999999999999888765443     345677777777778888889999999998755  


Q ss_pred             ChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 016714          238 PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD  317 (384)
Q Consensus       238 ~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~  317 (384)
                        +.+.+.+|.+..-..-.|+.++.....+|..+...+++...     +++.-+..+|.+++..-+..|+..++-+....
T Consensus       103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence              56788999999888889999999999999999988776543     45678888999888877888888888776544


Q ss_pred             hHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 016714          318 DAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVH  367 (384)
Q Consensus       318 ~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l  367 (384)
                      .....     ..+|.|..+|.+. +.-+|..|+-+|.+++..++.....+
T Consensus       176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii  219 (253)
T 2db0_A          176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVV  219 (253)
T ss_dssp             HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHH
Confidence            43332     5799999999999 99999999999999999888854433

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.87  E-value=9.9e-09  Score=109.23  Aligned_cols=275  Identities=13%  Similarity=0.177  Sum_probs=185.5

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC----cHHHHHHcCCHHHHHHhhcC-CCChHHHHHHHHHHHHHhcCC
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSP----PIDEVIKAGVVPRFVEFLGR-HDMPQLQFEAAWALTNVASGT  149 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~----~~~~~~~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~nl~~~~  149 (384)
                      .++.++..+.++++.++..|+.++..++..-...    ....-....++|.|+..+.+ ++ +.++..|+.+|+.++...
T Consensus        87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C           87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence            4567777777888888888999998887543111    01112234579999999984 65 899999999999998532


Q ss_pred             chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714          150 SEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN  229 (384)
Q Consensus       150 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~  229 (384)
                      ........ ...++.|+..+.++++.++..|+.+|+.++...+.   .++ ...++.++..+....+...+..++.++..
T Consensus       166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~  240 (1230)
T 1u6g_C          166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAA  240 (1230)
T ss_dssp             CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HHH-HHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            21111111 23567778888888999999999999999865432   122 23577888888554444566777888888


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC------------
Q 016714          230 FCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH------------  297 (384)
Q Consensus       230 L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~------------  297 (384)
                      ++...+..-......++|.+...+..++++++..+++++..++........... ..+++.++..+..            
T Consensus       241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~  319 (1230)
T 1u6g_C          241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED  319 (1230)
T ss_dssp             HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence            887543322234478899999999988999999999999988865432211111 2244555544421            


Q ss_pred             -------------------------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHH
Q 016714          298 -------------------------PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWT  352 (384)
Q Consensus       298 -------------------------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~  352 (384)
                                               ....++..|+.+++.++...++....++ ..+++.+...+.+. ++.+|..+.-+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~  397 (1230)
T 1u6g_C          320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA  397 (1230)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred             cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence                                     1134688899999999875443333333 45788888888777 78999999888


Q ss_pred             HHHHhc
Q 016714          353 ISNITA  358 (384)
Q Consensus       353 L~nl~~  358 (384)
                      +..+..
T Consensus       398 l~~l~~  403 (1230)
T 1u6g_C          398 YLSLLK  403 (1230)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.85  E-value=2.4e-08  Score=86.24  Aligned_cols=185  Identities=14%  Similarity=0.116  Sum_probs=140.0

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLG-RHDMPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      +.+.+.+.+.++..+..|+..|..++.+...-....+  ..+++.|...+. +.+ ..++..|+.+|+.++..-......
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~   94 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSN   94 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3577888999999999999999999876211000001  235778888884 777 899999999999998642222222


Q ss_pred             HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-
Q 016714          156 VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-  234 (384)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-  234 (384)
                      .+. .++|.++..+.+.+..+++.+..+|.+++...+ . +     ..++.+...+ .+.++.++..++..|..+.... 
T Consensus        95 ~~~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~-~-----~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~  165 (242)
T 2qk2_A           95 YAS-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L-E-----AQQESIVESL-SNKNPSVKSETALFIARALTRTQ  165 (242)
T ss_dssp             HHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H-H-----HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H-H-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcC
Confidence            222 478999999999999999999999999987543 2 1     2567788888 6678899999999999965543 


Q ss_pred             CC-CChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 016714          235 PP-TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSD  273 (384)
Q Consensus       235 ~~-~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~  273 (384)
                      +. ........++|.+..+|...+++++..|..+++.++.
T Consensus       166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            32 2344557899999999999999999999999998864

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.84  E-value=1.5e-08  Score=87.56  Aligned_cols=186  Identities=12%  Similarity=0.145  Sum_probs=141.9

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh
Q 016714          163 PMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV  242 (384)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  242 (384)
                      +.+...+.+.+...|..++..|..++...+....... ..+++.|...+..+.+..++..++.++..|+..-...-....
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            4578888899999999999999999865322111001 124566777773367888999999999999975432223445


Q ss_pred             hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC-ChHH-
Q 016714          243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG-DDAQ-  320 (384)
Q Consensus       243 ~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~-~~~~-  320 (384)
                      ..++|.+...+.+.+..++..+..++..++....  ..     .+++.+...|.+.++.++..++..|+.+... .++. 
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence            7889999999999999999999999999887543  11     3578899999999999999999999997544 3331 


Q ss_pred             HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          321 TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       321 ~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ....+. .+++.|..++.+. ++.+|+.|.-+++.++.
T Consensus       170 ~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          170 NKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             cHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence            222233 5889999999988 89999999999999996

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.83  E-value=7.6e-07  Score=89.25  Aligned_cols=240  Identities=15%  Similarity=0.105  Sum_probs=168.1

Q ss_pred             CHHHHHHHhcCCC--------HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 016714           75 SIPSMVQGVWSED--------PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVA  146 (384)
Q Consensus        75 ~l~~lv~~l~s~~--------~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~  146 (384)
                      .+..|...|.+++        +.++..|+..|.....++.++        .+++.|.+.|.+++ ...+..|+.+|+.+-
T Consensus       430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~  500 (963)
T 4ady_A          430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCM  500 (963)
T ss_dssp             HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhh
Confidence            3555666666544        567777888887654443211        24677888888776 677788999999874


Q ss_pred             cCCchhHHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHH
Q 016714          147 SGTSEHTRVVIEHGAVPMFVQLL-SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATW  225 (384)
Q Consensus       147 ~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~  225 (384)
                      .|+...       .++..|+..+ ...+..++..++.+|+.+....+.         .++.+++.|....++-++..++.
T Consensus       501 vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~  564 (963)
T 4ady_A          501 LGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAF  564 (963)
T ss_dssp             TTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHH
T ss_pred             cccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHH
Confidence            442211       1234444433 456889999999999998765543         56788888866777888888888


Q ss_pred             HHhhhhcCCCCCChhhhhchHHHHHHhh-ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc-CCCChhhH
Q 016714          226 TLSNFCRGKPPTPFEQVKPALPILQRLI-HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL-MHPSATVL  303 (384)
Q Consensus       226 ~L~~L~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL-~~~~~~v~  303 (384)
                      ++..-+.+..+      ...++.|++.+ .+.+..++..|+.+|+.+..+.++         .++.++.+| .+.++.++
T Consensus       565 alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR  629 (963)
T 4ady_A          565 TIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVR  629 (963)
T ss_dssp             HHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHH
T ss_pred             HHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHH
Confidence            87755555322      23344344333 456788999999999998776542         355666654 57889999


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 016714          304 IPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRA  362 (384)
Q Consensus       304 ~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  362 (384)
                      ..|..++|.++.+++..       .+++.|..++.+. +..||..|+.+|+.+.+|+.+
T Consensus       630 ~gAalALGli~aGn~~~-------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnn  680 (963)
T 4ady_A          630 CGTAFALGIACAGKGLQ-------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTE  680 (963)
T ss_dssp             HHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCT
T ss_pred             HHHHHHHHHhccCCCcH-------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCcc
Confidence            99999999999887632       2455677788888 999999999999999986444

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.82  E-value=2.6e-07  Score=76.32  Aligned_cols=187  Identities=14%  Similarity=0.125  Sum_probs=151.6

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .+..++.+|+..|+.++..|+..+.++++.- +.......-..++|.++.++.+.| ..+...|++||..+..+.+-.-+
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHH
Confidence            5678889999999999999999999999863 233334444567999999999888 99999999999999998776666


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~  234 (384)
                      .+..  ++..|..++.++++-++..++..|+.+-.-++       ..+++..+.+++ .+.+..++..++.+|.+++...
T Consensus       112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhccc
Confidence            6665  57889999999999999999999999932222       123567788888 8899999999999999999865


Q ss_pred             CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 016714          235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP  275 (384)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~  275 (384)
                      ..+  .....++.-+-.+|.+.|+.++..|+.++-.+...+
T Consensus       182 ~D~--~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          182 ADS--GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             SSC--CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            322  334566667778899999999999999999887663

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.75  E-value=1.1e-07  Score=82.33  Aligned_cols=190  Identities=12%  Similarity=0.161  Sum_probs=139.4

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHH-HhcCCchhHHHHHh-cCChHHHHHhh-cCCCHHHHHHHHHHHHhhhCCC--Cchh-
Q 016714          122 FVEFLGRHDMPQLQFEAAWALTN-VASGTSEHTRVVIE-HGAVPMFVQLL-SSGSDDVREQAVWALGNVAGDS--PSCR-  195 (384)
Q Consensus       122 Lv~lL~~~~~~~~~~~a~~~L~n-l~~~~~~~~~~i~~-~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~--~~~~-  195 (384)
                      +.+.+.+.+ +.-|.+|+..|.. ++.+.+.....-.+ ...+..|...+ .+.+..++..|+.+|+.|+.+-  +.+. 
T Consensus        21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            556677777 8999999999999 87543332100001 13467778888 6889999999999999998432  2232 


Q ss_pred             hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh-hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 016714          196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF-EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG  274 (384)
Q Consensus       196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~  274 (384)
                      .....  .++.++..+ .+....++..+..++..++...+.... .....+++.|...|.+.++.++..++.+|..++..
T Consensus       100 ~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~  176 (249)
T 2qk1_A          100 DYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE  176 (249)
T ss_dssp             HHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            22222  678888988 566678888888899888885422111 12567889999999999999999999999998865


Q ss_pred             Ch---HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714          275 PN---DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT  315 (384)
Q Consensus       275 ~~---~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (384)
                      ..   ......+...+++.|.+++.+.++.++..|..+++.++.
T Consensus       177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            44   333233335789999999999999999999999999874

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.74  E-value=1.9e-09  Score=83.69  Aligned_cols=121  Identities=17%  Similarity=0.166  Sum_probs=93.8

Q ss_pred             cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchh
Q 016714          116 AGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR  195 (384)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  195 (384)
                      ...++.++.+|++++ +.++..|+++|+.+..            ..++.|+.+|.++++.++..|+|+|+++..      
T Consensus        11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred             cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence            456888999999888 8999999999987643            136899999999999999999999999852      


Q ss_pred             hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 016714          196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYL  271 (384)
Q Consensus       196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l  271 (384)
                           ...++.|+..+ .+.++.++..++|+|..+..          ...++.|..++.++++.++..++++|+.+
T Consensus        72 -----~~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 -----ERAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -----HHHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                 12478888888 67888999999999998863          35788999999989999999999998753

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.74  E-value=8.2e-07  Score=80.08  Aligned_cols=253  Identities=11%  Similarity=0.060  Sum_probs=163.0

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      ..+.+++.++++|...+.-..-.+..+... .++.+      =+++.|.+=+++++ +-++-.|+++|++|...  +..+
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~~--~m~~  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITDS--TMLQ  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCCT--TTHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCCH--HHHH
Confidence            356778899999998888887777766443 12222      25778888888988 99999999999999873  3222


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~  234 (384)
                           ...+.+...|.+.++-|+..|+.+...+....|+.   +  .++++.+-+++ .+.++.++.+++.+|..++..+
T Consensus       139 -----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          139 -----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred             -----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence                 24567888889999999999999999999887753   2  25888888888 7778888899999999998763


Q ss_pred             CCCChhhhhchHHHHHHhhccC---CHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714          235 PPTPFEQVKPALPILQRLIHLN---DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG  311 (384)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~---~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~  311 (384)
                              ...+..++..+...   ++..+...++.+..++..++..    ....+++.+..+|++.++.|.-.|+++|.
T Consensus       208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~  275 (355)
T 3tjz_B          208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASAIV  275 (355)
T ss_dssp             --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHT
T ss_pred             --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence                    11334444444332   5667777777776666554111    22456888999999999999999999999


Q ss_pred             HhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 016714          312 NIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV  366 (384)
Q Consensus       312 nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~  366 (384)
                      .+......    +. ..+...|..++.++ ++.+|=.|...|..++...|+.++.
T Consensus       276 ~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~  324 (355)
T 3tjz_B          276 NLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA  324 (355)
T ss_dssp             C----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------
T ss_pred             hccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH
Confidence            98652222    11 23456677778888 8899999999999998877776553

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.74  E-value=1.9e-07  Score=84.17  Aligned_cols=243  Identities=14%  Similarity=0.090  Sum_probs=139.2

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      -....+.+.++++++-++-.|++.+.++...   +-.+.     +.+.+.+.|.+.+ |-++..|+.+...+....++..
T Consensus       104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m~~~-----l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~v  174 (355)
T 3tjz_B          104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDS---TMLQA-----IERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDVV  174 (355)
T ss_dssp             GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TTHHH-----HHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HHHHH-----HHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHHH
Confidence            3578888999999999999999999999653   33333     4667888888888 9999999999999988776643


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc--hhHHHHHHHHHHhhhh
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS--KLSMLRNATWTLSNFC  231 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~--~~~~~~~a~~~L~~L~  231 (384)
                          + +.++.+-.++.+.++-++.+|+.+|..+...+..         .+..|+..+....  ++-.+...+..+..++
T Consensus       175 ----~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~  240 (355)
T 3tjz_B          175 ----K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQL  240 (355)
T ss_dssp             ----H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-
T ss_pred             ----H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhc
Confidence                3 6789999999999999999999999999865421         3445566553322  3433344444444444


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714          232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG  311 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~  311 (384)
                      ..+   .......+++.+...|++.++.|..+|+++|..+...+...    . ..++..|..+|.++++.++-.|++.|.
T Consensus       241 ~~d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~----~-~~a~~~L~~fLss~d~niryvaLr~L~  312 (355)
T 3tjz_B          241 EDE---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKE----L-APAVSVLQLFCSSPKAALRYAAVRTLN  312 (355)
T ss_dssp             -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred             ccc---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHH----H-HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence            432   11233567788888899999999999999999986533221    1 234667777788899999999999999


Q ss_pred             HhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHH
Q 016714          312 NIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI  353 (384)
Q Consensus       312 nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L  353 (384)
                      .++...+...+.     .-.-+..++.++ +..+.-.|.-+|
T Consensus       313 ~l~~~~P~~v~~-----~n~~ie~li~d~-n~sI~t~Aittl  348 (355)
T 3tjz_B          313 KVAMKHPSAVTA-----CNLDLENLVTDA-NRSIATLAITTL  348 (355)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHHCcHHHHH-----HHHHHHHHccCC-cHhHHHHHHHHh
Confidence            999877755442     333467788888 777766665544

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.73  E-value=1.9e-07  Score=80.76  Aligned_cols=199  Identities=12%  Similarity=0.106  Sum_probs=143.8

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHh-hhCCCCchhhHHHh-cCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC-CCCh-
Q 016714          164 MFVQLLSSGSDDVREQAVWALGN-VAGDSPSCRDLVLS-SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP-PTPF-  239 (384)
Q Consensus       164 ~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~~~~i~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~-~~~~-  239 (384)
                      .+...+.+.+..-|..++..|+. ++.+.+.......+ ...+..|...+..+.+..++..++.+|..|+.+-. ..-. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            45667788899999999999999 87544332200001 12455666777567788889999999999997644 3333 


Q ss_pred             hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-
Q 016714          240 EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD-  318 (384)
Q Consensus       240 ~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-  318 (384)
                      .....++|.++..+......++..+..++..++...+.....-.-..+++.|...|.+.++.++..++.+|+.++.... 
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            4567889999999998889998888888877775431100000001257888999999999999999999999986544 


Q ss_pred             --HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHH
Q 016714          319 --AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA--GNRAQ  363 (384)
Q Consensus       319 --~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~  363 (384)
                        ......+...++|.|.+++.++ ++.+|..|.-+++-++.  |....
T Consensus       180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~vG~~~~  227 (249)
T 2qk1_A          180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIFGMNTF  227 (249)
T ss_dssp             CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCHHHH
Confidence              3333344357999999999998 99999999999999985  65443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.73  E-value=7e-07  Score=89.48  Aligned_cols=244  Identities=14%  Similarity=0.149  Sum_probs=166.6

Q ss_pred             CHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-------ChHHHHHHHHHHHH
Q 016714           75 SIPSMVQGVW---SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD-------MPQLQFEAAWALTN  144 (384)
Q Consensus        75 ~l~~lv~~l~---s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~-------~~~~~~~a~~~L~n  144 (384)
                      ++..+-+.|.   ++++.++..|+..+.-+-++..    ..     ++..|.+.|.+++       .+.++..|+..|+.
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            3455555555   5667788888888886655431    11     4667777776543       26788899999999


Q ss_pred             HhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHH
Q 016714          145 VASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNAT  224 (384)
Q Consensus       145 l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~  224 (384)
                      +..|+..       ..+++.|..++.+++..+++.|+.+||-+..+....       .++..|+..+....+..+++.++
T Consensus       464 a~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHH
Confidence            8765431       125677888888877778889999999885444321       14566777665666778999999


Q ss_pred             HHHhhhhcCCCCCChhhhhchHHHHHHhhc-cCCHhHHHHHHHHHHH--hccCChHHHHHHHHcCChHHHHHhc-CCCCh
Q 016714          225 WTLSNFCRGKPPTPFEQVKPALPILQRLIH-LNDEEVLTDACWALSY--LSDGPNDKIQAVIEAGVCPRLVELL-MHPSA  300 (384)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~i~~~a~~~l~~--l~~~~~~~~~~~~~~g~~~~L~~lL-~~~~~  300 (384)
                      .+|..+.-+.+        ..++.++..|. +.++.++..++.+++-  .-.++...         ++.|++.+ .+.+.
T Consensus       530 lgLGll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d  592 (963)
T 4ady_A          530 VGLALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred             HHHHhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence            99998877643        45666666664 5678888888777654  33444433         34344443 46678


Q ss_pred             hhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCC--HHHHHHH
Q 016714          301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN--RAQIQVH  367 (384)
Q Consensus       301 ~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~--~~~i~~l  367 (384)
                      .++..|+..||.|..++++         .++.++.++.+..++.+|..|+|+|+.+++|+  ++.++.|
T Consensus       593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L  652 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL  652 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence            8999999999999887763         34455555544449999999999999999854  4445433

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.69  E-value=6.1e-07  Score=74.14  Aligned_cols=187  Identities=18%  Similarity=0.167  Sum_probs=147.7

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714          117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD  196 (384)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (384)
                      +.+..|..+|...| +.++..|+.+|..+...-+.......-...++.++.++.+.++.+.-.|+.+|..+..+.|--..
T Consensus        33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            46888999998888 99999999999999886444444444446899999999999999999999999999988775434


Q ss_pred             HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh
Q 016714          197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN  276 (384)
Q Consensus       197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~  276 (384)
                      .+..  .+..|...+ ..++.-+..+++-.+.-+.-.      .....++..+..++.+.|..++..++.++.+++....
T Consensus       112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgklkv~------~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKLQPL------EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHCCBS------CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcCCcc------cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            3333  566778888 477777888999888888211      2235677788899999999999999999999987643


Q ss_pred             HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714          277 DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG  316 (384)
Q Consensus       277 ~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (384)
                      +.-   +-.+++.-+-.+|+++++.++..|+.++-.+.+.
T Consensus       183 D~~---i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          183 DSG---HLTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             SCC---CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CHH---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            211   1135677888899999999999999999999875

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.65  E-value=7.3e-09  Score=80.40  Aligned_cols=121  Identities=18%  Similarity=0.201  Sum_probs=93.8

Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCC
Q 016714          159 HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP  238 (384)
Q Consensus       159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~  238 (384)
                      .+.++.++.+|.++++.++..|+++|+++...            .++.|+..| .++++.++..++|+|.++..      
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC------
Confidence            45788899999999999999999999987321            257888888 67889999999999998864      


Q ss_pred             hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714          239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI  313 (384)
Q Consensus       239 ~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (384)
                          ...++.|..+|.++++.++..++++|+.+..           ...++.|..+|.++++.++..|+++|+.|
T Consensus        72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                3568899999999999999999999999852           12468899999999999999999998864

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.44  E-value=6.1e-06  Score=76.22  Aligned_cols=234  Identities=14%  Similarity=0.110  Sum_probs=157.7

Q ss_pred             HHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcC--ChHHHHHhhcC-----------------CCHHHHHHHH
Q 016714          121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG--AVPMFVQLLSS-----------------GSDDVREQAV  181 (384)
Q Consensus       121 ~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g--~i~~L~~lL~~-----------------~~~~v~~~a~  181 (384)
                      .++..|......+.+..++.+|..+... ++.|..+.+.+  .+|.++.++..                 ....++-+++
T Consensus       171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            3555555532256677899999998884 88898888643  36666554331                 1356778889


Q ss_pred             HHHHhhhCCCCchhhHHHhcCCh--HHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChh-----hh-hchHHHHHHhh
Q 016714          182 WALGNVAGDSPSCRDLVLSSGAL--MPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE-----QV-KPALPILQRLI  253 (384)
Q Consensus       182 ~~L~nl~~~~~~~~~~i~~~g~i--~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-----~~-~~~~~~L~~lL  253 (384)
                      .+++-++.+.+ ..+.+...+..  ..|+..+.....+.+.+-++.+|.|+....+.....     .+ .++ +.++..|
T Consensus       250 l~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L  327 (480)
T 1ho8_A          250 LLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL  327 (480)
T ss_dssp             HHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred             HHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence            99999887765 44555555533  566777767778899999999999999875322111     11 233 4455555


Q ss_pred             c---cCCHhHHHHHHHHHHHh-------ccC--------------Ch-HHHHHH--------H--HcCChHHHHHhcCC-
Q 016714          254 H---LNDEEVLTDACWALSYL-------SDG--------------PN-DKIQAV--------I--EAGVCPRLVELLMH-  297 (384)
Q Consensus       254 ~---~~~~~i~~~a~~~l~~l-------~~~--------------~~-~~~~~~--------~--~~g~~~~L~~lL~~-  297 (384)
                      .   -+|+++..+.-.....|       +..              ++ ..-+.+        .  +..++..|+++|.+ 
T Consensus       328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~  407 (480)
T 1ho8_A          328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK  407 (480)
T ss_dssp             HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred             hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence            3   35676665543332222       111              11 111111        1  11357889999963 


Q ss_pred             ---------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          298 ---------PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       298 ---------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                               .++.+..-||.=||.++...|.....+-+.|+=+.++.++.++ +++||.+|..|+.-+..
T Consensus       408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence                     3677888899999999999998888888889999999999999 99999999999987764

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.35  E-value=1.2e-05  Score=74.40  Aligned_cols=233  Identities=15%  Similarity=0.161  Sum_probs=155.2

Q ss_pred             HHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc--CCHHHHHHhhcC--------------CC--ChHHHHHHH
Q 016714           79 MVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKA--GVVPRFVEFLGR--------------HD--MPQLQFEAA  139 (384)
Q Consensus        79 lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~--g~i~~Lv~lL~~--------------~~--~~~~~~~a~  139 (384)
                      ++..|.+ ++...+..+++++..++..  .+.+..+.+.  +.+|.++.++..              ++  ..+++++++
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~--~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAVI--PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTS--HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhcc--hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            4444544 2345567788888888763  4555556543  346777654431              11  267899999


Q ss_pred             HHHHHHhcCCchhHHHHHhcCCh--HHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCc-----hhhHHHhcCChHHHHHHh
Q 016714          140 WALTNVASGTSEHTRVVIEHGAV--PMFVQLLSS-GSDDVREQAVWALGNVAGDSPS-----CRDLVLSSGALMPLLAQL  211 (384)
Q Consensus       140 ~~L~nl~~~~~~~~~~i~~~g~i--~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-----~~~~i~~~g~i~~L~~~l  211 (384)
                      .|+.-++.. ++....+...++.  +.|+..++. ..+++...++.+|.|+....+.     ..+.+...++ ++++..|
T Consensus       250 l~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L  327 (480)
T 1ho8_A          250 LLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL  327 (480)
T ss_dssp             HHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred             HHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence            999999985 6666667666643  566666664 6689999999999999976532     1223333334 5666666


Q ss_pred             ccc--chhHHHHHHHHH---------------------HhhhhcCCCCCCh-h-----------hhhchHHHHHHhhcc-
Q 016714          212 NEH--SKLSMLRNATWT---------------------LSNFCRGKPPTPF-E-----------QVKPALPILQRLIHL-  255 (384)
Q Consensus       212 ~~~--~~~~~~~~a~~~---------------------L~~L~~~~~~~~~-~-----------~~~~~~~~L~~lL~~-  255 (384)
                      ...  .|+++....-+.                     .+....+.|.... .           ....++..|+++|.+ 
T Consensus       328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~  407 (480)
T 1ho8_A          328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK  407 (480)
T ss_dssp             HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred             hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence            432  355554433322                     2222222222111 0           113567788899973 


Q ss_pred             ---------CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714          256 ---------NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT  315 (384)
Q Consensus       256 ---------~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (384)
                               .|+.++.-||.=|+.++.+.+.....+-+.|+=..+++++.+++++|+..|+.|+.-+..
T Consensus       408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                     478899999999999999888777777778999999999999999999999999988754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.12  E-value=0.00072  Score=68.75  Aligned_cols=264  Identities=13%  Similarity=0.112  Sum_probs=178.7

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcC-Cchh
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIER-SPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASG-TSEH  152 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~-~~~~  152 (384)
                      .+..+.+.+.+....  ..|+..+..++.... .++. +.+--+.+|.++..+.+.. ..++..|..++..+... +++.
T Consensus        55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a  130 (986)
T 2iw3_A           55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-EPYIVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVA  130 (986)
T ss_dssp             HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-HHHHHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-ccchHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHH
Confidence            456666666654333  778888888874331 2233 3333368999999988877 78988887777666553 2333


Q ss_pred             HHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714          153 TRVVIEHGAVPMFVQLLSSG-SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~  231 (384)
                      .     ..++|.|+..|.+. .-..+..|+.++..++...+..-... -..++|.+...+ -+..+++...+..++..+|
T Consensus       131 ~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~  203 (986)
T 2iw3_A          131 I-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALR-MPELIPVLSETM-WDTKKEVKAAATAAMTKAT  203 (986)
T ss_dssp             H-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHH-HHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHG
T ss_pred             H-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHh-ccchhcchHhhc-ccCcHHHHHHHHHHHHHHH
Confidence            3     23578899888754 57899999999999997654211111 123566777777 6778899999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714          232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG  311 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~  311 (384)
                      ..-.+.+   +.+.+|.|++.+.+++.  ...+...|+.-+.-.+-....+  +=.+|.|.+-|......++..++-++.
T Consensus       204 ~~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~  276 (986)
T 2iw3_A          204 ETVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIID  276 (986)
T ss_dssp             GGCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred             hcCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEc
Confidence            7544433   36789999999987744  4555555555443322111111  113677888888888889999999999


Q ss_pred             HhhcC--ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714          312 NIVTG--DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT  357 (384)
Q Consensus       312 nl~~~--~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  357 (384)
                      |+|.-  ++.....++ ..++|.+.+....-.+|++|+.|..++.-+.
T Consensus       277 n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          277 NMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred             chhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            99864  444444433 5788888888877668999988877777663

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.11  E-value=8.8e-05  Score=65.25  Aligned_cols=157  Identities=13%  Similarity=0.102  Sum_probs=123.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      ...+++.|++++......++..|..+++.+ ...+.+++..+++..|+......+ ...+..++.+|.++... .....-
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~-v~Gm~g  196 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLF-VDGMLG  196 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhc-cccccc
Confidence            467888888889899999999999977754 788999999999999999998887 89999999999999885 555555


Q ss_pred             HH-hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHh--------cC--ChHHHHHHhc--ccchhHHHHH
Q 016714          156 VI-EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLS--------SG--ALMPLLAQLN--EHSKLSMLRN  222 (384)
Q Consensus       156 i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~--------~g--~i~~L~~~l~--~~~~~~~~~~  222 (384)
                      ++ ....|..+..++.+.+..+...|+..|..++..++.....+.+        .|  ....|+.+|.  ...|.+++.+
T Consensus       197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~  276 (339)
T 3dad_A          197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY  276 (339)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred             hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence            55 3457888888999889999999999999998766544333332        11  2667888884  2568888888


Q ss_pred             HHHHHhhhhcCCC
Q 016714          223 ATWTLSNFCRGKP  235 (384)
Q Consensus       223 a~~~L~~L~~~~~  235 (384)
                      +...+-.+..+-|
T Consensus       277 amtLIN~lL~~ap  289 (339)
T 3dad_A          277 TVTLINKTLAALP  289 (339)
T ss_dssp             HHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhcCC
Confidence            8777666555433

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.96  E-value=0.00013  Score=74.20  Aligned_cols=275  Identities=13%  Similarity=0.141  Sum_probs=188.3

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc--hh
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS--EH  152 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~--~~  152 (384)
                      .+..+++.+...+......++..+..++..+...   ..+..+++..+.+.+.+.. ..  +.|+.++..|+....  ..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~   88 (986)
T 2iw3_A           15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIE---HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPS   88 (986)
T ss_dssp             HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS---SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTT
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHhccccc---cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCC
Confidence            4566777777655566677888888877643111   1112367888888887755 23  889999999985321  12


Q ss_pred             HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                      .+.++- +.+|.++..+.+....++..|-.++-.++..-+...  +  ...++.|+..|...........++.++..|+.
T Consensus        89 ~e~~~~-~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~  163 (986)
T 2iw3_A           89 VEPYIV-QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVD  163 (986)
T ss_dssp             THHHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             cccchH-HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            233222 678999999888889999999888888875443221  1  33688899999555567888999999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC-ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714          233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG-PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG  311 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~-~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~  311 (384)
                      ..|......+..++|.+...+....+++...+..++..+|.. +...+     ...+|.|++.+.+++.  ...++..|+
T Consensus       164 ~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p~~--~~~~~~~l~  236 (986)
T 2iw3_A          164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADPTE--VPETVHLLG  236 (986)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCTTH--HHHHHHHHT
T ss_pred             HhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcChhh--hHHHHHHhh
Confidence            643222233467888888888888999999999888888753 11112     2458999999987754  455666666


Q ss_pred             HhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHhC
Q 016714          312 NIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA--GNRAQIQVHDSF  370 (384)
Q Consensus       312 nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~i~~l~~~  370 (384)
                      .-+.-.. .....+. =+.|.|.+-|... ...+++.++-++.|+|.  .+|..+...+..
T Consensus       237 ~~tfv~~-v~~~~l~-~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~  294 (986)
T 2iw3_A          237 ATTFVAE-VTPATLS-IMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK  294 (986)
T ss_dssp             TCCCCSC-CCHHHHH-HHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT
T ss_pred             cCeeEee-ecchhHH-HHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhhh
Confidence            6544322 1111111 1467788888877 78899999999999997  787777766543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.87  E-value=0.00045  Score=60.81  Aligned_cols=178  Identities=12%  Similarity=0.066  Sum_probs=126.4

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHH
Q 016714          119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLV  198 (384)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i  198 (384)
                      +..+++-|.+++ ......+++-|..+-..+.+....+++.+++..|+......+.+.+..++.||+++.......-..+
T Consensus       120 a~~iiekL~~~~-~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv  198 (339)
T 3dad_A          120 VNAILEKLYSSS-GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV  198 (339)
T ss_dssp             HHHHHHHHHHCC-HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHhcCC-cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence            345666666666 6778889999998555568899999999999999999999999999999999999987644333333


Q ss_pred             HhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh-----------hchHHHHHHhhc---cCCHhHHHHH
Q 016714          199 LSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV-----------KPALPILQRLIH---LNDEEVLTDA  264 (384)
Q Consensus       199 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-----------~~~~~~L~~lL~---~~~~~i~~~a  264 (384)
                      -....|..+..++. +.+..+.+.++..|..++...+.......           ...++.|+.+|+   +.|.+++.++
T Consensus       199 s~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a  277 (339)
T 3dad_A          199 AHSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT  277 (339)
T ss_dssp             HCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence            34456777888884 57788999999999999887532211111           123568888997   7789999999


Q ss_pred             HHHHHHhccCCh--H----HHHHHHHcCChHHHHHhcCCC
Q 016714          265 CWALSYLSDGPN--D----KIQAVIEAGVCPRLVELLMHP  298 (384)
Q Consensus       265 ~~~l~~l~~~~~--~----~~~~~~~~g~~~~L~~lL~~~  298 (384)
                      +..|..+..+.+  +    ....+-+.|+-..+...|...
T Consensus       278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~  317 (339)
T 3dad_A          278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA  317 (339)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence            988877665533  2    222233445445555556543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.86  E-value=0.0004  Score=60.82  Aligned_cols=192  Identities=13%  Similarity=0.106  Sum_probs=125.6

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHH-H-cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPI-DEVI-K-AGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS  150 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~-~-~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~  150 (384)
                      ..|| +-+.|.|.++..+..|+..+.+++........ +... . ....+.+-..+.+.+ ..++..++.++..++....
T Consensus        10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~   87 (278)
T 4ffb_C           10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA   87 (278)
T ss_dssp             -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred             hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence            3456 66789999999999999999998864321111 1111 1 234556677887777 8999999999988875311


Q ss_pred             h-----hHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHH
Q 016714          151 E-----HTRVVIEHGAVPMFVQ-LLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNAT  224 (384)
Q Consensus       151 ~-----~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~  224 (384)
                      .     ......-..++|.|+. .+.+....++..+..++..++...... ..     .++.++..+ .+.++.++..++
T Consensus        88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l  160 (278)
T 4ffb_C           88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA  160 (278)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred             hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence            1     1111122346788876 478888999999998888776432211 11     234455555 667788887777


Q ss_pred             HHHhhhhcCC--CCC-ChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 016714          225 WTLSNFCRGK--PPT-PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG  274 (384)
Q Consensus       225 ~~L~~L~~~~--~~~-~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~  274 (384)
                      ..|..+....  ... ....+..+++.+..+|.+.|+.|+..|..++..+...
T Consensus       161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            7777665532  111 2233456777888899999999999999999887654

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.74  E-value=0.00093  Score=69.17  Aligned_cols=221  Identities=9%  Similarity=0.048  Sum_probs=125.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC--CC-C--------cHHHHHHcCCHHHHHHhhcCC--CChHHHHHHHHHHHHHhcCCch
Q 016714           85 SEDPALQLEATTQFRKLLSIE--RS-P--------PIDEVIKAGVVPRFVEFLGRH--DMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        85 s~~~~~~~~a~~~l~~l~s~~--~~-~--------~~~~~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      +.++..+..|+.++..++.+.  .. .        ....++..    .++..|.++  ..+-+|..|+|+++.++..-. 
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~----~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-  490 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK----EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-  490 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH----HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHH----HhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-
Confidence            456778888888888886431  01 0        22222222    233344555  138999999999999987421 


Q ss_pred             hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-------Cc-hhhHHHh--cCChHHHHHHhccc----chh
Q 016714          152 HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS-------PS-CRDLVLS--SGALMPLLAQLNEH----SKL  217 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~-~~~~i~~--~g~i~~L~~~l~~~----~~~  217 (384)
                       .+ .. ..+++.++..|.+++..++..|+++|.+++...       +. .++.+..  ...++.|+.++...    .+.
T Consensus       491 -~~-~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~  567 (960)
T 1wa5_C          491 -KA-QL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKL  567 (960)
T ss_dssp             -HH-HH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             -HH-HH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcc
Confidence             12 22 246788888888888999999999999998631       11 1222211  11344455555332    111


Q ss_pred             HHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc-----cCCHhHHHHHHHHHHHhccC-ChHHHHHHHHcCChHHH
Q 016714          218 SMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIH-----LNDEEVLTDACWALSYLSDG-PNDKIQAVIEAGVCPRL  291 (384)
Q Consensus       218 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~-----~~~~~i~~~a~~~l~~l~~~-~~~~~~~~~~~g~~~~L  291 (384)
                      .....+..++..++...+.........+++.|...+.     .+++.....++.+|+.++.. .++.... +...+++.+
T Consensus       568 ~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~  646 (960)
T 1wa5_C          568 AENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTF  646 (960)
T ss_dssp             TSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHH
Confidence            1223455555554443222222334455555555543     23567777888899888876 3333322 334567777


Q ss_pred             HHhcCCCChhhHHHHHHHHHHhh
Q 016714          292 VELLMHPSATVLIPALRTVGNIV  314 (384)
Q Consensus       292 ~~lL~~~~~~v~~~a~~~l~nl~  314 (384)
                      ...|..........++.+++.+.
T Consensus       647 ~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          647 LTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHHhhhHhhHHHHHHHHHHHH
Confidence            77776655556666666666554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.73  E-value=0.0012  Score=68.23  Aligned_cols=217  Identities=11%  Similarity=0.080  Sum_probs=123.3

Q ss_pred             CCCChHHHHHHHHHHHHHhcCCchhHHHHHhc-----CChHH----HHHhhcCC---CHHHHHHHHHHHHhhhCCCCchh
Q 016714          128 RHDMPQLQFEAAWALTNVASGTSEHTRVVIEH-----GAVPM----FVQLLSSG---SDDVREQAVWALGNVAGDSPSCR  195 (384)
Q Consensus       128 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~-----g~i~~----L~~lL~~~---~~~v~~~a~~~L~nl~~~~~~~~  195 (384)
                      +++ ...++.|+.+++.++.+...... ....     ...+.    ++..|.++   ++.++..|+|+++.++..-+  .
T Consensus       416 ~~~-w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~  491 (960)
T 1wa5_C          416 SKN-WKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--K  491 (960)
T ss_dssp             --C-HHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--H
T ss_pred             chh-HHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--H
Confidence            344 68899999999999863211100 0000     11122    23334555   89999999999999986532  1


Q ss_pred             hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC-------CCChhh----hhchHHHHHHhhccCC---H--h
Q 016714          196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP-------PTPFEQ----VKPALPILQRLIHLND---E--E  259 (384)
Q Consensus       196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~-------~~~~~~----~~~~~~~L~~lL~~~~---~--~  259 (384)
                      +. . ...++.++..| .+++..++..|+++|.+++....       ......    ...+++.|..++....   .  .
T Consensus       492 ~~-l-~~~l~~l~~~L-~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~  568 (960)
T 1wa5_C          492 AQ-L-IELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA  568 (960)
T ss_dssp             HH-H-HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred             HH-H-HHHHHHHHHHh-CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccc
Confidence            22 1 22567778887 45678899999999999997421       111222    2455556666666541   0  1


Q ss_pred             HHHHHHHHHHHhcc----CChHHHHHHHHcCChHHHHHhc----CC-CChhhHHHHHHHHHHhhcC-ChHHHHHHHHcCc
Q 016714          260 VLTDACWALSYLSD----GPNDKIQAVIEAGVCPRLVELL----MH-PSATVLIPALRTVGNIVTG-DDAQTQFVIDNGV  329 (384)
Q Consensus       260 i~~~a~~~l~~l~~----~~~~~~~~~~~~g~~~~L~~lL----~~-~~~~v~~~a~~~l~nl~~~-~~~~~~~i~~~g~  329 (384)
                      ....++.+|..++.    .-......     +++.|...+    .+ .++.....++.+|+.++.. .++.... +...+
T Consensus       569 ~~e~l~~al~~vv~~~~~~~~p~~~~-----l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~  642 (960)
T 1wa5_C          569 ENEFLMRSIFRVLQTSEDSIQPLFPQ-----LLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSM  642 (960)
T ss_dssp             SCHHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHH
Confidence            12344444444332    11122222     233333333    33 3556666789999998875 3333333 33357


Q ss_pred             hHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          330 LPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       330 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      +|.+..++... ..+...++.-+++.+..
T Consensus       643 ~p~~~~iL~~~-~~~~~~~~~~i~~~l~~  670 (960)
T 1wa5_C          643 MPTFLTVFSED-IQEFIPYVFQIIAFVVE  670 (960)
T ss_dssp             HHHHHHHHHTT-CTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh-hHhhHHHHHHHHHHHHH
Confidence            78888888766 56677777666666653

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.58  E-value=0.00073  Score=70.05  Aligned_cols=215  Identities=12%  Similarity=0.108  Sum_probs=120.4

Q ss_pred             hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhh---c--CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHH
Q 016714          132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL---S--SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMP  206 (384)
Q Consensus       132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL---~--~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~  206 (384)
                      ...++.|+++++.++.+-.....     ..++.++.++   .  +.++.++..++|+++.++..-......+.  .+++.
T Consensus       478 w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~  550 (971)
T 2x1g_F          478 WTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINL  550 (971)
T ss_dssp             CHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHH
Confidence            67899999999999886443221     2333333332   2  34899999999999998742111111111  14455


Q ss_pred             HHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcc--CCHhHHHHHHHHHHHhccCC--hHHHHHH
Q 016714          207 LLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHL--NDEEVLTDACWALSYLSDGP--NDKIQAV  282 (384)
Q Consensus       207 L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~i~~~a~~~l~~l~~~~--~~~~~~~  282 (384)
                      |+..| +   +.+...|++++.++|+..+..-......++..+..++..  -+...+..++.+++.++..-  ++....+
T Consensus       551 l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~  626 (971)
T 2x1g_F          551 LVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL  626 (971)
T ss_dssp             HHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred             HHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            56555 2   678999999999999753211112234555556666666  35778888888888887642  2222221


Q ss_pred             HH--cCChHHHHHhcCCC--ChhhHHH---HHHHHHHhhcC--C-----------hHHHHHHHHcCchHHHHHHhccC-C
Q 016714          283 IE--AGVCPRLVELLMHP--SATVLIP---ALRTVGNIVTG--D-----------DAQTQFVIDNGVLPCLYQLLTQN-H  341 (384)
Q Consensus       283 ~~--~g~~~~L~~lL~~~--~~~v~~~---a~~~l~nl~~~--~-----------~~~~~~i~~~g~l~~L~~ll~~~-~  341 (384)
                      ..  ..++..+..++...  ++.....   ++..|+.+..+  .           ++....+ -..+++.+..++... .
T Consensus       627 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~  705 (971)
T 2x1g_F          627 DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVE  705 (971)
T ss_dssp             HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHhccc
Confidence            11  12233333444433  2322333   44444444321  1           0011111 235788888877643 2


Q ss_pred             chhHHHHHHHHHHHHhc
Q 016714          342 KKSIKKEACWTISNITA  358 (384)
Q Consensus       342 ~~~v~~~a~~~L~nl~~  358 (384)
                      +..+.+.++++++.++.
T Consensus       706 ~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          706 EIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            56899999999999774

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.46  E-value=0.0072  Score=63.13  Aligned_cols=131  Identities=17%  Similarity=0.210  Sum_probs=78.0

Q ss_pred             HHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc--cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC--
Q 016714          222 NATWTLSNFCRGKPPTPFEQVKPALPILQRLIH--LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH--  297 (384)
Q Consensus       222 ~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~--  297 (384)
                      .+.-+|..++...+   ......+.+.+...+.  ..++..+..++++++.++.........-.-..+++.+..+...  
T Consensus       432 ~~~~~L~~l~~~~~---~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~  508 (1049)
T 3m1i_C          432 SEREVLVYLTHLNV---IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKR  508 (1049)
T ss_dssp             HHHHHHHHHHHHCH---HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHccCH---HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhc
Confidence            34445555553221   1222334445555554  3578889999999999986543321111112345555554432  


Q ss_pred             ---CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          298 ---PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       298 ---~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                         +.+.++..+++++|.++..-..+.+. + ..+++.+...+.++ ++.++..||+++.+++.
T Consensus       509 ~~~~~~~v~~~~~~~lgry~~~~~~~~~~-l-~~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~  569 (1049)
T 3m1i_C          509 GKDNKAVVASDIMYVVGQYPRFLKAHWNF-L-RTVILKLFEFMHET-HEGVQDMACDTFIKIVQ  569 (1049)
T ss_dssp             SHHHHHHHHHHHHHHHHHCHHHHHHCHHH-H-HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHhHHHH-H-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence               23344446889999887432222221 1 14677788888877 89999999999999997

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.35  E-value=0.011  Score=52.06  Aligned_cols=212  Identities=13%  Similarity=0.112  Sum_probs=146.1

Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch----hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC----RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF  230 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~----~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L  230 (384)
                      .+...+.+..|+..|..=+-+.+..+..++.++.......    -+.+..  -.+.|..++....++++.-.+-..|...
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            3455688889999998888889999999999987654332    223332  2333333443334566666666667777


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHHhcCCCChhhHHHHH
Q 016714          231 CRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA---GVCPRLVELLMHPSATVLIPAL  307 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~---g~~~~L~~lL~~~~~~v~~~a~  307 (384)
                      .+...-.......+.+-.+.+.++.++-++..+|..++..+..........++..   .+......+|.+++.-.+..++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            6653222222335666677788899999999999999988776655444444443   3577788889999999999999


Q ss_pred             HHHHHhhcCC--hHH-HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc---CCHHHHHHHHh
Q 016714          308 RTVGNIVTGD--DAQ-TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA---GNRAQIQVHDS  369 (384)
Q Consensus       308 ~~l~nl~~~~--~~~-~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~i~~l~~  369 (384)
                      ..||.+....  ... +.++-+..-+..++.+|.+. +..++-+|.-++--+++   .+++...-++.
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~  297 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLK  297 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHH
Confidence            9999998642  222 23333446688899999999 99999999999888887   34444444433

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.29  E-value=0.0083  Score=62.11  Aligned_cols=169  Identities=12%  Similarity=0.109  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHH
Q 016714          134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-----GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLL  208 (384)
Q Consensus       134 ~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~  208 (384)
                      .+..+..+|..++..-.+.   +.. -+++.+-..+.+     .+...++.++++++.++.......     ...++.++
T Consensus       437 ~R~~~~~~l~~~~~~~~~~---~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~  507 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLNDY---ILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLM  507 (971)
T ss_dssp             HHHHHHHHHHHHHTTCTTH---HHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHH---HHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHH
Confidence            4556666776666532211   111 112233333332     456789999999999986544211     12333444


Q ss_pred             HHh---cc-cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHH
Q 016714          209 AQL---NE-HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIE  284 (384)
Q Consensus       209 ~~l---~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~  284 (384)
                      ..+   .. +.++.++..++|+++.++..-.. .......+++.|+..|.   +.++..|++++.+++........... 
T Consensus       508 ~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~-  582 (971)
T 2x1g_F          508 RVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA-  582 (971)
T ss_dssp             HHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-
T ss_pred             HHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-
Confidence            333   21 23678899999999999975321 12456778888888882   78999999999999976554433322 


Q ss_pred             cCChHHHHHhcCC--CChhhHHHHHHHHHHhhcC
Q 016714          285 AGVCPRLVELLMH--PSATVLIPALRTVGNIVTG  316 (384)
Q Consensus       285 ~g~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~  316 (384)
                      ..++..+..++..  .+...+..++.+++.++..
T Consensus       583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            2466677777765  3567888999999999764

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.29  E-value=0.069  Score=55.31  Aligned_cols=271  Identities=12%  Similarity=0.093  Sum_probs=142.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHH-HhhcCCCChHHHHHHHHHHHHHhcCC---c--hhHHHHHh
Q 016714           85 SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFV-EFLGRHDMPQLQFEAAWALTNVASGT---S--EHTRVVIE  158 (384)
Q Consensus        85 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv-~lL~~~~~~~~~~~a~~~L~nl~~~~---~--~~~~~i~~  158 (384)
                      ++++++...++.++..+++   --+...+++.++++.++ .+|..   ++++..|+.||..+.+..   +  ..-..+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            3456677778888888875   45677888899999999 88853   789999999999998732   2  11111111


Q ss_pred             --cCChHHH-----------HHhh---cCCCHHHHHHHHHHHHhhhCC-------CCchhhHHHhcCChHHHHHHhcccc
Q 016714          159 --HGAVPMF-----------VQLL---SSGSDDVREQAVWALGNVAGD-------SPSCRDLVLSSGALMPLLAQLNEHS  215 (384)
Q Consensus       159 --~g~i~~L-----------~~lL---~~~~~~v~~~a~~~L~nl~~~-------~~~~~~~i~~~g~i~~L~~~l~~~~  215 (384)
                        .+.+..+           -..+   ..++.+.....+..+..+...       .+..+..+.  .++..|+.+- ..+
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence              0111111           1111   223456666666666554321       121122111  0122333332 344


Q ss_pred             hhHHHHHHHHHHhhhhcCC--CCCChhhh----hchHHHHHHhhccCC--------------------Hh-HHHHHH-HH
Q 016714          216 KLSMLRNATWTLSNFCRGK--PPTPFEQV----KPALPILQRLIHLND--------------------EE-VLTDAC-WA  267 (384)
Q Consensus       216 ~~~~~~~a~~~L~~L~~~~--~~~~~~~~----~~~~~~L~~lL~~~~--------------------~~-i~~~a~-~~  267 (384)
                      +.++...++..=..|+..-  ........    ..+++.++.-+..++                    .+ -.-... .+
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            5666554443322333211  11122222    344444544443321                    00 111011 33


Q ss_pred             HHHhccCCh-HHHHHHHHcCChHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhcc-----
Q 016714          268 LSYLSDGPN-DKIQAVIEAGVCPRLVELLMH--PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQ-----  339 (384)
Q Consensus       268 l~~l~~~~~-~~~~~~~~~g~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~-----  339 (384)
                      |.+++.-.. +....     +++.+...+.+  .+...++.+++++|.|+.+..+....-.-..+++.|+.++.+     
T Consensus       437 L~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d  511 (1023)
T 4hat_C          437 LVYLTHLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD  511 (1023)
T ss_dssp             HHHHHHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHhccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence            333332211 22111     23445444543  567889999999999997754332212223467788888864     


Q ss_pred             CCchhHHHHHHHHHHHHhc---CCHHHHHHHHhC
Q 016714          340 NHKKSIKKEACWTISNITA---GNRAQIQVHDSF  370 (384)
Q Consensus       340 ~~~~~v~~~a~~~L~nl~~---~~~~~i~~l~~~  370 (384)
                      . +..++..+||+++.++.   .+++..+.+++.
T Consensus       512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~  544 (1023)
T 4hat_C          512 N-KAVVASDIMYVVGQYPRFLKAHWNFLRTVILK  544 (1023)
T ss_dssp             H-HHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHH
T ss_pred             c-hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            2 44566788999998885   577777777655

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.28  E-value=0.0042  Score=64.24  Aligned_cols=219  Identities=13%  Similarity=0.146  Sum_probs=127.6

Q ss_pred             cCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhh---cCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCC
Q 016714          127 GRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL---SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGA  203 (384)
Q Consensus       127 ~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~  203 (384)
                      .+.+ ...++.++++++.++.+-.+..     ...++.++..+   .++++.++..++|+++.++..-.... ..+ ...
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHH
Confidence            3444 7889999999999998643311     12233444433   33578899999999999874211111 122 247


Q ss_pred             hHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccC--CHhHHHHHHHHHHHhccCCh-HHHH
Q 016714          204 LMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLN--DEEVLTDACWALSYLSDGPN-DKIQ  280 (384)
Q Consensus       204 i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~i~~~a~~~l~~l~~~~~-~~~~  280 (384)
                      ++.++..| .+  +.++..|+++|.++|...+..-......++..+..++...  +...+..++.+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            77788877 33  6789999999999997543222223355556666666642  56788888999999886542 3332


Q ss_pred             HHHHcCChHHHHHhc----CCC-ChhhHH---HHHHHHHHhhcCCh----------------------HHHHHHHHcCch
Q 016714          281 AVIEAGVCPRLVELL----MHP-SATVLI---PALRTVGNIVTGDD----------------------AQTQFVIDNGVL  330 (384)
Q Consensus       281 ~~~~~g~~~~L~~lL----~~~-~~~v~~---~a~~~l~nl~~~~~----------------------~~~~~i~~~g~l  330 (384)
                      ..++ .+++.+...+    ..+ ++..+.   ..+.+|+.+..+-.                      .....+ -..++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  685 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVV-LQQVF  685 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHH-HHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHH-HHHHH
Confidence            2222 2333333333    222 333333   45555555542200                      011112 22355


Q ss_pred             HHHHHHhccC-CchhHHHHHHHHHHHHhc
Q 016714          331 PCLYQLLTQN-HKKSIKKEACWTISNITA  358 (384)
Q Consensus       331 ~~L~~ll~~~-~~~~v~~~a~~~L~nl~~  358 (384)
                      +.+..++... .++.+.+.+|.++..++.
T Consensus       686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~  714 (963)
T 2x19_B          686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVK  714 (963)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence            6666666432 256888889988888764

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.27  E-value=0.0049  Score=52.97  Aligned_cols=175  Identities=9%  Similarity=0.039  Sum_probs=113.4

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh----hcCCCHHHHHHHHHHHHhhh----CCCCc
Q 016714          122 FVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL----LSSGSDDVREQAVWALGNVA----GDSPS  193 (384)
Q Consensus       122 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l----L~~~~~~v~~~a~~~L~nl~----~~~~~  193 (384)
                      +...|-+.+ ..-+..++..|......+++   .++.  .++.++..    +.+.+..+...++.+|..+.    ..+..
T Consensus        51 ~~~~lfs~d-~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~  124 (266)
T 2of3_A           51 LMSQLFHKD-FKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP  124 (266)
T ss_dssp             HHHHHTCSC-HHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhcCCC-HHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            444444555 56666677666665443232   2221  23333332    34678888888888887764    22222


Q ss_pred             hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 016714          194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSD  273 (384)
Q Consensus       194 ~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~  273 (384)
                      ..+.-. .-.+|.|+..+ .++...++..+-.++..++.-.      -...+++.+...+.+.+...+..++..+.++..
T Consensus       125 ~~~~ea-~~~lP~LveKl-Gd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          125 MSQEEV-SAFVPYLLLKT-GEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNARQRSECLLVIEYYIT  196 (266)
T ss_dssp             CCHHHH-HHHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             chHHHH-HHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            222211 12678889988 5555667666666666555421      124577888889999999999999999998865


Q ss_pred             CChHHHHHHHHcCCh---HHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714          274 GPNDKIQAVIEAGVC---PRLVELLMHPSATVLIPALRTVGNIVT  315 (384)
Q Consensus       274 ~~~~~~~~~~~~g~~---~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (384)
                      ...-.     ....+   +.+..++.+.+..|+..|+.++..+-.
T Consensus       197 ~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          197 NAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             hcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            32111     23468   999999999999999999999987754

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.19  E-value=0.029  Score=49.36  Aligned_cols=242  Identities=13%  Similarity=0.151  Sum_probs=162.2

Q ss_pred             HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh----HHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHh
Q 016714          112 EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH----TRVVIE-HGAVPMFVQLLSSGSDDVREQAVWALGN  186 (384)
Q Consensus       112 ~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~----~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~n  186 (384)
                      .+...+++..|+..|..=+ -+.+..++.++.++.......    ...+.. ..++..|+....  ++++.-.|-..|.-
T Consensus        73 ei~~~dll~~Li~~l~~L~-fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe  149 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCC-chhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence            4566788999999998877 789999999999988754432    223332 122333333333  44555555555666


Q ss_pred             hhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh----hchHHHHHHhhccCCHhHHH
Q 016714          187 VAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV----KPALPILQRLIHLNDEEVLT  262 (384)
Q Consensus       187 l~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~----~~~~~~L~~lL~~~~~~i~~  262 (384)
                      .+.+.. +...++..+.+..+.+.+ +.++=++...|..++..|............    ...+.....+|.+++--++.
T Consensus       150 cir~e~-la~~iL~~~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR  227 (341)
T 1upk_A          150 CIRHEP-LAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  227 (341)
T ss_dssp             HHTSHH-HHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHhHH-HHHHHhccHHHHHHHHHh-cCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence            555544 556666777788888888 677788888999988877765322222222    45667778899999999999


Q ss_pred             HHHHHHHHhccCChHH---HHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC---hHHHHHHHHc--CchHHHH
Q 016714          263 DACWALSYLSDGPNDK---IQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD---DAQTQFVIDN--GVLPCLY  334 (384)
Q Consensus       263 ~a~~~l~~l~~~~~~~---~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~---~~~~~~i~~~--g~l~~L~  334 (384)
                      .++..|+.+.......   ...+-+..-+..++.+|.+.+..++..|..++--.++..   +.....++..  .++..|.
T Consensus       228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~  307 (341)
T 1upk_A          228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLS  307 (341)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHH
Confidence            9999999988653321   222233356888999999999999999999998887642   3444444432  5666666


Q ss_pred             HHhccC-CchhHHHHHHHHHHHHhc
Q 016714          335 QLLTQN-HKKSIKKEACWTISNITA  358 (384)
Q Consensus       335 ~ll~~~-~~~~v~~~a~~~L~nl~~  358 (384)
                      ....+. ++.....+=...+..|..
T Consensus       308 ~f~~d~~eDeqF~dEK~~lI~~I~~  332 (341)
T 1upk_A          308 KFQNDRTEDEQFNDEKTYLVKQIRD  332 (341)
T ss_dssp             HTTTTC-CCSHHHHHHHHHHHHHHT
T ss_pred             hCCCCCcchhhHHHHHHHHHHHHHh
Confidence            666544 356666666666666654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.18  E-value=0.00057  Score=63.90  Aligned_cols=217  Identities=16%  Similarity=0.155  Sum_probs=143.1

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC-cHHHHHHcCCHHHHHHhhc--C-----CC--ChHHHHHHHHHHH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSP-PIDEVIKAGVVPRFVEFLG--R-----HD--MPQLQFEAAWALT  143 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~-~~~~~~~~g~i~~Lv~lL~--~-----~~--~~~~~~~a~~~L~  143 (384)
                      +..+.|+..|.++.++++.-|+..||.++...... .+..-.+..+.-.|+.+|.  .     +|  -..+|+.|+.+|+
T Consensus       174 qfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          174 DFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             GTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            45688888999999999999999999988653110 0000001133344444332  1     11  1478999999999


Q ss_pred             HHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHH-hcCChHHHHHHhcccchhHHHHH
Q 016714          144 NVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVL-SSGALMPLLAQLNEHSKLSMLRN  222 (384)
Q Consensus       144 nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~-~~g~i~~L~~~l~~~~~~~~~~~  222 (384)
                      .+ ..-+..      ..++..++..+..+.-+++..++-.|..+       .+.+. -.++++.++.-| .+.|.+++..
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-------~DLL~~Ld~Vv~aVL~GL-~D~DDDVRAV  318 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-------KEFVEDKDGLCRKLVSLL-SSPDEDIKLL  318 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-------GGGCCCHHHHHHHHHHHT-TCSSHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-------HHHHHHHHHHHHHHHhhc-CCcccHHHHH
Confidence            98 543332      34455555555778899999999999988       12211 133566677777 6678899999


Q ss_pred             HHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCC--HhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCCh
Q 016714          223 ATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLND--EEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA  300 (384)
Q Consensus       223 a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~--~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~  300 (384)
                      |+.+|.-++  .+    ..+..++..+...|.+-|  ......++..|+.|+..+..   .-.....+|+|.+.|.|.-.
T Consensus       319 AAetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtIT  389 (800)
T 3oc3_A          319 SAELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVP  389 (800)
T ss_dssp             HHHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSH
T ss_pred             HHHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcH
Confidence            999999888  12    334566677777765432  22344455566666655431   11223789999999999999


Q ss_pred             hhHHHHHHHHHHhh
Q 016714          301 TVLIPALRTVGNIV  314 (384)
Q Consensus       301 ~v~~~a~~~l~nl~  314 (384)
                      .||..+++++..+.
T Consensus       390 SVR~AVL~TL~tfL  403 (800)
T 3oc3_A          390 EVRTSILNMVKNLS  403 (800)
T ss_dssp             HHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998887

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.06  E-value=0.0058  Score=63.10  Aligned_cols=96  Identities=11%  Similarity=0.142  Sum_probs=62.9

Q ss_pred             CCHhHHHHHHHHHHHhccCChHHHHHH-HH----cCChHHHHHhcC-----CCChhhHHHHHHHHHHhhcCChHHHHHHH
Q 016714          256 NDEEVLTDACWALSYLSDGPNDKIQAV-IE----AGVCPRLVELLM-----HPSATVLIPALRTVGNIVTGDDAQTQFVI  325 (384)
Q Consensus       256 ~~~~i~~~a~~~l~~l~~~~~~~~~~~-~~----~g~~~~L~~lL~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~i~  325 (384)
                      .++..++.++.+++.++++.......+ -.    ..+++.+..++.     ++.+.++..+++++|..+..-..+     
T Consensus       455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-----  529 (980)
T 3ibv_A          455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-----  529 (980)
T ss_dssp             HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-----
T ss_pred             CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-----
Confidence            457788999999999988643211000 00    023455555544     677899999999999998653322     


Q ss_pred             HcCchHHHHHHh------ccCCchhHHHHHHHHHHHHhc
Q 016714          326 DNGVLPCLYQLL------TQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       326 ~~g~l~~L~~ll------~~~~~~~v~~~a~~~L~nl~~  358 (384)
                       ...++.++..+      .++ ++.++..|+.++.+++.
T Consensus       530 -~~~l~~~L~~ll~~~gl~~~-~~~V~~~a~~af~~f~~  566 (980)
T 3ibv_A          530 -SAAIPALIEYFVGPRGIHNT-NERVRPRAWYLFYRFVK  566 (980)
T ss_dssp             -CTTHHHHHHHHTSTTTTTCC-CTTTHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHhccccccCC-ChhHHHHHHHHHHHHHH
Confidence             23344444443      345 67899999999999996

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.98  E-value=0.0081  Score=62.10  Aligned_cols=139  Identities=11%  Similarity=0.122  Sum_probs=93.1

Q ss_pred             cCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc--cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHH
Q 016714          170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE--HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALP  247 (384)
Q Consensus       170 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~  247 (384)
                      .+.+...++.++++++.++.......     ...++.++..+..  .+++.++..++|+++.++..-.. .......+++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~  532 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLP  532 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence            45678899999999999997643211     1234444444422  23667899999999999875211 1245678899


Q ss_pred             HHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC--CChhhHHHHHHHHHHhhcCC
Q 016714          248 ILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH--PSATVLIPALRTVGNIVTGD  317 (384)
Q Consensus       248 ~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~  317 (384)
                      .++..|++  +.++..|++++.+++........... ..++..|..++..  -+...+..++.++|.++...
T Consensus       533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~  601 (963)
T 2x19_B          533 LVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL  601 (963)
T ss_dssp             HHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence            98888854  88999999999999864332211111 1344555555554  25678888999999998654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.97  E-value=0.017  Score=50.37  Aligned_cols=190  Identities=14%  Similarity=0.110  Sum_probs=122.1

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH--HHHH-hc-CChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCc-
Q 016714          119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT--RVVI-EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS-  193 (384)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~--~~i~-~~-g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-  193 (384)
                      +| |-+-|.+.+ ...|.+|...|..+....+...  .... .. ...+.+-..+.+.+..++..++.+|..++..... 
T Consensus        12 lp-l~e~l~sk~-WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~   89 (278)
T 4ffb_C           12 LP-LEERLTYKL-WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS   89 (278)
T ss_dssp             CC-HHHHTTCSS-HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred             CC-HHHhcccCc-HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence            44 556777888 8999999999888765433221  1111 12 2455666788899999999999999988743210 


Q ss_pred             --hhh--HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHH
Q 016714          194 --CRD--LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALS  269 (384)
Q Consensus       194 --~~~--~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~  269 (384)
                        .+.  ...-..+++.|+.....+....++..+..++..++.....     ...+++.+...+.+.++.++..++..|.
T Consensus        90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVY  164 (278)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence              111  1112235666776522556667777777777766654211     1234677788889999999999998888


Q ss_pred             HhccC-ChH--HHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714          270 YLSDG-PND--KIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG  316 (384)
Q Consensus       270 ~l~~~-~~~--~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (384)
                      .+... ...  .....+ ..+++.+..+|.+.++.||..|..+++.+-..
T Consensus       165 ~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          165 ELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            77532 110  011111 13566788889999999999999999988653

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.95  E-value=0.015  Score=49.85  Aligned_cols=179  Identities=11%  Similarity=0.079  Sum_probs=119.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc-C-CHHHHHHhhcCCCChHHHHHHHHHHHHHhc----CCc
Q 016714           77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-G-VVPRFVEFLGRHDMPQLQFEAAWALTNVAS----GTS  150 (384)
Q Consensus        77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g-~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~----~~~  150 (384)
                      +.+...+.+.|...+..|+..|...++..   + +.++.. + +++.+.--+.+++ +.+...++..|..+..    ...
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~---~-~~~~~~lDll~kw~~lr~~d~N-~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTS---P-RSLLSNSDLLLKWCTLRFFETN-PAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHC---H-HHHHHTHHHHHHHHHHHTTSCC-HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhC---h-HHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhccc
Confidence            67788888999999999999999887642   1 222211 1 2332222223455 8888888888877643    111


Q ss_pred             hhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714          151 EHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF  230 (384)
Q Consensus       151 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L  230 (384)
                      .....-. .-.+|.|+.-+.++.+.+++.+-.++..++.-.+.       ..+.+.+++-+ .+.+...+..++..+..+
T Consensus       124 ~~~~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~-ksKN~R~R~e~l~~l~~l  194 (266)
T 2of3_A          124 PMSQEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDAL-KSKNARQRSECLLVIEYY  194 (266)
T ss_dssp             CCCHHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGG-GCSCHHHHHHHHHHHHHH
T ss_pred             cchHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            1121111 12579999999999999999988888776532221       12456677777 666777888887777777


Q ss_pred             hcCCCCCChhhhhchH---HHHHHhhccCCHhHHHHHHHHHHHhcc
Q 016714          231 CRGKPPTPFEQVKPAL---PILQRLIHLNDEEVLTDACWALSYLSD  273 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~---~~L~~lL~~~~~~i~~~a~~~l~~l~~  273 (384)
                      -......    ....+   |.+.+++.+.|..++..|+.++..+..
T Consensus       195 i~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          195 ITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            6543222    13467   999999999999999999999986644

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=96.78  E-value=0.047  Score=57.03  Aligned_cols=149  Identities=11%  Similarity=0.148  Sum_probs=90.9

Q ss_pred             HHHHHhhc--CCCHHHHHHHHHHHHhhhCCCCchh-hHHHhcCChHHHHHHhcc----cchhHHHHHHHHHHhhhhcCCC
Q 016714          163 PMFVQLLS--SGSDDVREQAVWALGNVAGDSPSCR-DLVLSSGALMPLLAQLNE----HSKLSMLRNATWTLSNFCRGKP  235 (384)
Q Consensus       163 ~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~-~~i~~~g~i~~L~~~l~~----~~~~~~~~~a~~~L~~L~~~~~  235 (384)
                      +.+-..+.  +.+...++.++|+++.+++...... ..+. ..+++.++.+...    ++++-++..++|+++.++..-.
T Consensus       454 ~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~  532 (1049)
T 3m1i_C          454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK  532 (1049)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence            44444454  3567889999999999986533210 1111 1133333332211    1233344468999998886531


Q ss_pred             CCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHH----------HcCChHHHHHhcCCCChhhHHH
Q 016714          236 PTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVI----------EAGVCPRLVELLMHPSATVLIP  305 (384)
Q Consensus       236 ~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~----------~~g~~~~L~~lL~~~~~~v~~~  305 (384)
                      . .......+++.++..+.++++.++..|++++.+++.....   .+.          -..++..+..++..-+..-...
T Consensus       533 ~-~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~---~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~  608 (1049)
T 3m1i_C          533 A-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY---HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT  608 (1049)
T ss_dssp             H-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH---HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred             h-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH---HhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHH
Confidence            1 2345678888888889888999999999999999975332   221          0133444555555555555667


Q ss_pred             HHHHHHHhhcC
Q 016714          306 ALRTVGNIVTG  316 (384)
Q Consensus       306 a~~~l~nl~~~  316 (384)
                      .+.+++.++..
T Consensus       609 ~~eai~~ii~~  619 (1049)
T 3m1i_C          609 FYKACGIIISE  619 (1049)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            78888888654

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=96.71  E-value=0.0034  Score=65.02  Aligned_cols=142  Identities=12%  Similarity=0.152  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHhhhCCCCch-hhHHHhcCChHHHHHHhcc----cchhHHHHHHHHHHhhhhcCCCCCChhhhhchH
Q 016714          172 GSDDVREQAVWALGNVAGDSPSC-RDLVLSSGALMPLLAQLNE----HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPAL  246 (384)
Q Consensus       172 ~~~~v~~~a~~~L~nl~~~~~~~-~~~i~~~g~i~~L~~~l~~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~  246 (384)
                      .+-..++.++|++|.|++....- -+.++ ..+++.|+.++..    +....++..++|+++..++.-. .......+++
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~-~~~~~L~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK-AHWNFLRTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH-HCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence            56889999999999999754422 11111 1266777776632    1223345578899998887531 1123456777


Q ss_pred             HHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHH----------cCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714          247 PILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIE----------AGVCPRLVELLMHPSATVLIPALRTVGNIVTG  316 (384)
Q Consensus       247 ~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~----------~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (384)
                      ..|...+..+++.++..|||++.++|.....   .+..          ..++..+...+..-++.-...++.++|.++..
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~---~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~  619 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKCKY---HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH---HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH---HhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            7788888778899999999999999975332   2221          12333444444445666678899999999876


Q ss_pred             Ch
Q 016714          317 DD  318 (384)
Q Consensus       317 ~~  318 (384)
                      .+
T Consensus       620 ~~  621 (1023)
T 4hat_C          620 ER  621 (1023)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.51  E-value=0.0036  Score=53.29  Aligned_cols=66  Identities=23%  Similarity=0.217  Sum_probs=42.3

Q ss_pred             HHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcC
Q 016714          249 LQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNG  328 (384)
Q Consensus       249 L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g  328 (384)
                      +..++..+++.|+..+...+                  ..+.|..++.+++..|+..++..++                 
T Consensus       175 l~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~-----------------  219 (244)
T 1lrv_A          175 LGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS-----------------  219 (244)
T ss_dssp             GGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC-----------------
T ss_pred             HHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC-----------------
Confidence            33455666666666665432                  2356777777888888887777654                 


Q ss_pred             chHHHHHHhccCCchhHHHHHHHH
Q 016714          329 VLPCLYQLLTQNHKKSIKKEACWT  352 (384)
Q Consensus       329 ~l~~L~~ll~~~~~~~v~~~a~~~  352 (384)
                       .+.|..+ .++ ++.||..|.-.
T Consensus       220 -~~~L~~L-~D~-~~~VR~aa~~~  240 (244)
T 1lrv_A          220 -LEALREL-DEP-DPEVRLAIAGR  240 (244)
T ss_dssp             -HHHHHHC-CCC-CHHHHHHHHCC
T ss_pred             -HHHHHHc-cCC-CHHHHHHHHHH
Confidence             2445555 666 88898887643

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=96.44  E-value=0.21  Score=45.50  Aligned_cols=158  Identities=13%  Similarity=0.109  Sum_probs=103.9

Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC----------CCChHHHHHHHHHHHHH
Q 016714           77 PSMVQGVWSED-PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR----------HDMPQLQFEAAWALTNV  145 (384)
Q Consensus        77 ~~lv~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~----------~~~~~~~~~a~~~L~nl  145 (384)
                      ..++..|.+.- .......+..|+.-+..++..-++.++ .+++..|+.+|..          ..+...+..++.||..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            45566666543 233345567777666544334456676 6678999888852          11257889999999999


Q ss_pred             hcCCchhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC-ch-hhHHH----------hcCChHHHHHHhc
Q 016714          146 ASGTSEHTRVVIE-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP-SC-RDLVL----------SSGALMPLLAQLN  212 (384)
Q Consensus       146 ~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~i~----------~~g~i~~L~~~l~  212 (384)
                      ... ......++. ..++..|...|.+.++.++..++..|+-+|..+. .. ...++          +..-+.+++..|.
T Consensus       148 mN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          148 MNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             TSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             hcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            874 555665665 5678999999999999999999999999886543 22 22222          2334667777775


Q ss_pred             ccchhHHHHHHHHHHhhhhcCCCC
Q 016714          213 EHSKLSMLRNATWTLSNFCRGKPP  236 (384)
Q Consensus       213 ~~~~~~~~~~a~~~L~~L~~~~~~  236 (384)
                      ...+.+...++...+-.+....+.
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~~d  250 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPAEE  250 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCCC
Confidence            445666666666655556655433

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.38  E-value=0.11  Score=43.71  Aligned_cols=139  Identities=13%  Similarity=0.136  Sum_probs=86.0

Q ss_pred             HHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC----C------CChHHHHHHHHHHHHHhcCCchhHHHHHh-cCC
Q 016714           93 EATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR----H------DMPQLQFEAAWALTNVASGTSEHTRVVIE-HGA  161 (384)
Q Consensus        93 ~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~----~------~~~~~~~~a~~~L~nl~~~~~~~~~~i~~-~g~  161 (384)
                      ..+..|+..+..++..-++.+ ..+++..|+.+|..    +      .+.+.+.+++.||..+... ....+.++. .++
T Consensus        20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~   97 (233)
T 2f31_A           20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEG   97 (233)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSH
T ss_pred             HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHH
Confidence            345555555543323335556 56778888887753    1      1257789999999999874 555666665 567


Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC-ch-hhHHH----------hcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714          162 VPMFVQLLSSGSDDVREQAVWALGNVAGDSP-SC-RDLVL----------SSGALMPLLAQLNEHSKLSMLRNATWTLSN  229 (384)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~i~----------~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~  229 (384)
                      +..|...|.++++.++..++..|+.+|.-+. .. ...++          +..-..++++.+....+.+....++..+-.
T Consensus        98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~  177 (233)
T 2f31_A           98 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA  177 (233)
T ss_dssp             HHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            8889999999999999999999988885443 12 22222          122344555555434444555444444444


Q ss_pred             hhcC
Q 016714          230 FCRG  233 (384)
Q Consensus       230 L~~~  233 (384)
                      +...
T Consensus       178 li~~  181 (233)
T 2f31_A          178 LITP  181 (233)
T ss_dssp             HHTT
T ss_pred             HHCC
Confidence            4444

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.32  E-value=0.03  Score=46.72  Aligned_cols=142  Identities=10%  Similarity=0.023  Sum_probs=100.8

Q ss_pred             HHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHH-hhccCCHhHHHHHHHHHHHhcc-CChHHHHHHH
Q 016714          206 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQR-LIHLNDEEVLTDACWALSYLSD-GPNDKIQAVI  283 (384)
Q Consensus       206 ~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~-lL~~~~~~i~~~a~~~l~~l~~-~~~~~~~~~~  283 (384)
                      .+...|-+++..+++..|+.+|..+ .        .....++.+.. +-..++..|+.-++.++..++. ..++      
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------  138 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------  138 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence            4555554666567888888887766 2        11457777777 4456678899999999998874 3222      


Q ss_pred             HcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC--hHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 016714          284 EAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD--DAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNR  361 (384)
Q Consensus       284 ~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~--~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  361 (384)
                        ..++.+..++.+++..++..|...+.--+...  .....     -+++.|-.+..++ +..||+..+|.|..++..+|
T Consensus       139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~-----~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN-----EAIRRIADLKEDV-SEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHH-----HHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCH
T ss_pred             --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHH-----HHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCH
Confidence              25678889999999999999887764322211  11111     1466666677777 89999999999999999999


Q ss_pred             HHHHHHHhC
Q 016714          362 AQIQVHDSF  370 (384)
Q Consensus       362 ~~i~~l~~~  370 (384)
                      +-+...++.
T Consensus       211 d~V~~~~~~  219 (240)
T 3l9t_A          211 DLVKIELKN  219 (240)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            998888765

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=96.18  E-value=0.04  Score=56.90  Aligned_cols=221  Identities=12%  Similarity=0.061  Sum_probs=124.3

Q ss_pred             hHHHHHHHHHHHHHhcCCchhHHHH-HhcC----ChHHHHHhhc-----CCCHHHHHHHHHHHHhhhCCCCchhhHHHhc
Q 016714          132 PQLQFEAAWALTNVASGTSEHTRVV-IEHG----AVPMFVQLLS-----SGSDDVREQAVWALGNVAGDSPSCRDLVLSS  201 (384)
Q Consensus       132 ~~~~~~a~~~L~nl~~~~~~~~~~i-~~~g----~i~~L~~lL~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~  201 (384)
                      ....+.++.+|+.++.+-......+ -...    .++.+..++.     .+++.++..++|+++..+.--..      ..
T Consensus       457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~  530 (980)
T 3ibv_A          457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ES  530 (980)
T ss_dssp             HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CC
T ss_pred             HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cc
Confidence            6778889999999888643211111 0112    2344455544     57899999999999998753221      12


Q ss_pred             CChHHHHHHhcc-----cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcc-----CC--------------
Q 016714          202 GALMPLLAQLNE-----HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHL-----ND--------------  257 (384)
Q Consensus       202 g~i~~L~~~l~~-----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~-----~~--------------  257 (384)
                      ..+++++..+..     +++..++..++.++.++|......-......++..+..+|..     .+              
T Consensus       531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~  610 (980)
T 3ibv_A          531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRN  610 (980)
T ss_dssp             TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHT
T ss_pred             hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhccc
Confidence            356677766644     456789999999999999875432222334455555555542     11              


Q ss_pred             --HhHHHHHHHHHHHhccC---ChHHHHHHHHcCChHH----HHHhcCCC----Chhh-HHHHHHHHHHhhcCChHH---
Q 016714          258 --EEVLTDACWALSYLSDG---PNDKIQAVIEAGVCPR----LVELLMHP----SATV-LIPALRTVGNIVTGDDAQ---  320 (384)
Q Consensus       258 --~~i~~~a~~~l~~l~~~---~~~~~~~~~~~g~~~~----L~~lL~~~----~~~v-~~~a~~~l~nl~~~~~~~---  320 (384)
                        .+-+.+...+++.+...   +.+.....++ .+++.    +-..+...    +... ....+.++|+++.+-+..   
T Consensus       611 ~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~  689 (980)
T 3ibv_A          611 SDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSE  689 (980)
T ss_dssp             TTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-C
T ss_pred             CCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCC
Confidence              11344455566665532   3333222222 22333    33333221    1111 225677788888653211   


Q ss_pred             ---HHHHHHcCchHHHHHHhcc-CCchhHHHHHHHHHHHHhcCC
Q 016714          321 ---TQFVIDNGVLPCLYQLLTQ-NHKKSIKKEACWTISNITAGN  360 (384)
Q Consensus       321 ---~~~i~~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~  360 (384)
                         ...++. .+.+.+...+.. ..+..|+..++.++..+...-
T Consensus       690 ~~p~~~~f~-~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~l  732 (980)
T 3ibv_A          690 EVAWLASFN-KASDEIFLILDRMGFNEDIRGAVRFTSGRIINVV  732 (980)
T ss_dssp             CCSHHHHHH-HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTT
T ss_pred             CCcHHHHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc
Confidence               111221 355666666652 226889999999999998743

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.10  E-value=0.16  Score=42.34  Aligned_cols=145  Identities=17%  Similarity=0.040  Sum_probs=104.0

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHhhhC-CCCchh
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQ-LLSSGSDDVREQAVWALGNVAG-DSPSCR  195 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~-~~~~~~  195 (384)
                      .++..-.+.+++. .++|..|+..|+.. .. .        ..+++.+.. +-.+++=.|++.++.+++.++. ..+.. 
T Consensus        72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~-~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-  139 (240)
T 3l9t_A           72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SK-D--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-  139 (240)
T ss_dssp             HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TT-S--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred             HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cC-c--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-
Confidence            3455556666666 79999999998877 31 1        124555665 4556788999999999999984 33321 


Q ss_pred             hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 016714          196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP  275 (384)
Q Consensus       196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~  275 (384)
                             .++.+..-. .+++..+++.++-.+.--|.. + ........++|.|..+..+++..|+..+.|.|..++..+
T Consensus       140 -------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          140 -------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             -------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             -------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence                   345555555 788899999998887655543 2 122233668888888888899999999999999999998


Q ss_pred             hHHHHHHHH
Q 016714          276 NDKIQAVIE  284 (384)
Q Consensus       276 ~~~~~~~~~  284 (384)
                      ++-+..+++
T Consensus       210 Pd~V~~~~~  218 (240)
T 3l9t_A          210 PDLVKIELK  218 (240)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887665544

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.10  E-value=0.73  Score=47.84  Aligned_cols=100  Identities=18%  Similarity=0.251  Sum_probs=64.9

Q ss_pred             CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCC-----hhhHHHHHHHHHHhhcCChHHHHHHHHcCch
Q 016714          256 NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS-----ATVLIPALRTVGNIVTGDDAQTQFVIDNGVL  330 (384)
Q Consensus       256 ~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~-----~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l  330 (384)
                      .++..+..+||+++.++..-.+..+.-.=..+++.|+.+..+..     ..++...++++|..+..-..+-. +++ .++
T Consensus       491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~-~L~-~vl  568 (1073)
T 3gjx_A          491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWK-FLK-TVV  568 (1073)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HHH-HHH
T ss_pred             CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHH-HHH-HHH
Confidence            35889999999999998543321111111245677776664432     23455567899987654322222 121 356


Q ss_pred             HHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          331 PCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       331 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ..|...+..+ ++.++..||-++..++.
T Consensus       569 ~~L~~~m~~~-~~~vq~aA~~af~~i~~  595 (1073)
T 3gjx_A          569 NKLFEFMHET-HDGVQDMACDTFIKIAQ  595 (1073)
T ss_dssp             HHHHHHTTCC-STTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence            6777888777 88999999999999986

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.95  E-value=0.28  Score=43.05  Aligned_cols=173  Identities=13%  Similarity=0.098  Sum_probs=102.8

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCC----hHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCc
Q 016714          119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGA----VPMFVQLLSS-GSDDVREQAVWALGNVAGDSPS  193 (384)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~----i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~  193 (384)
                      +..+.++++.+.  +.++-++.++.-.+. .+.....+.+...    +..+...+.+ ..+..+-.++.+++|+..... 
T Consensus       105 l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-  180 (304)
T 3ebb_A          105 LQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-  180 (304)
T ss_dssp             HHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred             HHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence            455556655443  455566666655554 2444444433222    2233344432 456678899999999987765 


Q ss_pred             hhhHHHhcCChHHHHHHhc---ccchhHHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhc-cCCHhHHHHHHHHH
Q 016714          194 CRDLVLSSGALMPLLAQLN---EHSKLSMLRNATWTLSNFCRGK-PPTPFEQVKPALPILQRLIH-LNDEEVLTDACWAL  268 (384)
Q Consensus       194 ~~~~i~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~lL~-~~~~~i~~~a~~~l  268 (384)
                      .++.+...  ...+++.+.   ...+..++..++.++.|++... ..........++..+..++. ..|.+....++-+|
T Consensus       181 g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          181 GQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            55555542  234444432   3456788888888999988753 11223333445555556664 35889999999999


Q ss_pred             HHhccCChHHHHHHHHcCChHHHHHhcCC
Q 016714          269 SYLSDGPNDKIQAVIEAGVCPRLVELLMH  297 (384)
Q Consensus       269 ~~l~~~~~~~~~~~~~~g~~~~L~~lL~~  297 (384)
                      ++|...+.+..+....-|+-..+-++.+.
T Consensus       259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            99998776655544444655555555544

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=95.88  E-value=0.055  Score=50.96  Aligned_cols=214  Identities=12%  Similarity=0.089  Sum_probs=135.3

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc----C------C---CHHHHHHHHHHH
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS----S------G---SDDVREQAVWAL  184 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~----~------~---~~~v~~~a~~~L  184 (384)
                      +...|+.-|-++. .++|..|+-+|..+..............+. +..++++.    +      +   -..||+.|+.+|
T Consensus       175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL  252 (800)
T 3oc3_A          175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL  252 (800)
T ss_dssp             TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence            5566766666777 899999999999876532110000011111 22333221    1      1   247999999999


Q ss_pred             HhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHH
Q 016714          185 GNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDA  264 (384)
Q Consensus       185 ~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a  264 (384)
                      |.+ ..-+.-      ..++..|+..+ .....+++..++-.|..+..--.     ...++++.++..|...|.+|+.-|
T Consensus       253 GaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVA  319 (800)
T 3oc3_A          253 SRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLS  319 (800)
T ss_dssp             HHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGGCC-----CHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHHHH-----HHHHHHHHHHhhcCCcccHHHHHH
Confidence            998 544421      23444444433 45567888888888888821111     157788999999999999999999


Q ss_pred             HHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCC--hhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCc
Q 016714          265 CWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS--ATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHK  342 (384)
Q Consensus       265 ~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~--~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~  342 (384)
                      +.+|.-++  .++....+     +..+-..|.+.+  ..-....+..|+.+++.....   -.+...+|.|...+.++ -
T Consensus       320 AetLiPIA--~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-I  388 (800)
T 3oc3_A          320 AELLCHFP--ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-V  388 (800)
T ss_dssp             HHHHTTSC--CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-S
T ss_pred             HHHhhhhc--chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-c
Confidence            99999998  22333332     334444443221  233455667777776654311   11237899999999999 8


Q ss_pred             hhHHHHHHHHHHHHh
Q 016714          343 KSIKKEACWTISNIT  357 (384)
Q Consensus       343 ~~v~~~a~~~L~nl~  357 (384)
                      ..||+.+..++..+.
T Consensus       389 TSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          389 PEVRTSILNMVKNLS  403 (800)
T ss_dssp             HHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988887766

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.87  E-value=0.21  Score=46.08  Aligned_cols=123  Identities=19%  Similarity=0.184  Sum_probs=93.3

Q ss_pred             CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHH
Q 016714          172 GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQR  251 (384)
Q Consensus       172 ~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~  251 (384)
                      ++...+..|+..+..+..+.|..++.     ++..+++++ .+.|..++..|...|..+|.+      ..+..+...|++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            46899999999999999998876554     677899999 788899999999999999986      346788899999


Q ss_pred             hhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714          252 LIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV  314 (384)
Q Consensus       252 lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (384)
                      +|+++++.-...+-++|..+...++..        .+..+...+..+++.+++.++..|..-.
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKL  162 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            999999877777777777766555422        2233333333346778888887775543

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=95.52  E-value=0.66  Score=42.24  Aligned_cols=157  Identities=13%  Similarity=0.122  Sum_probs=99.2

Q ss_pred             HHHHHhcCCCHHH-HHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC----C------CChHHHHHHHHHHHHHh
Q 016714           78 SMVQGVWSEDPAL-QLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR----H------DMPQLQFEAAWALTNVA  146 (384)
Q Consensus        78 ~lv~~l~s~~~~~-~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~----~------~~~~~~~~a~~~L~nl~  146 (384)
                      .+++.|.+..... ....+..|+..+..++...++.+. .+++..|+.+|..    +      .+...+.+++.||..+.
T Consensus         8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm   86 (386)
T 2bnx_A            8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   86 (386)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence            4555565543222 233455565555443233455564 5678888887752    1      12578999999999998


Q ss_pred             cCCchhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC-ch-hhHHH----------hcCChHHHHHHhcc
Q 016714          147 SGTSEHTRVVIE-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP-SC-RDLVL----------SSGALMPLLAQLNE  213 (384)
Q Consensus       147 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~i~----------~~g~i~~L~~~l~~  213 (384)
                      .. ......++. .+++..|...|.++++.++..++..|+.+|.-+. .. ...++          +..-+.++++.+..
T Consensus        87 N~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~  165 (386)
T 2bnx_A           87 NN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  165 (386)
T ss_dssp             SS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             CC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence            74 555555555 5678999999999999999999988888886443 11 22222          23346667777755


Q ss_pred             cchhHHHHHHHHHHhhhhcCCCC
Q 016714          214 HSKLSMLRNATWTLSNFCRGKPP  236 (384)
Q Consensus       214 ~~~~~~~~~a~~~L~~L~~~~~~  236 (384)
                      +.+.+...+++..+-.+....+.
T Consensus       166 ~~~~e~~~a~m~lIN~lv~~~~d  188 (386)
T 2bnx_A          166 GTSIALKVGCLQLINALITPAEE  188 (386)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             CChHHHHHHHHHHHHHHHCCCCC
Confidence            56667766666666666665443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.41  E-value=0.95  Score=38.12  Aligned_cols=192  Identities=15%  Similarity=0.176  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHhhhCCCCchhhHH-HhcCChHHHHHHhcc------cc-----hhHHHHHHHHHHhhhhcCCCCCChhh
Q 016714          174 DDVREQAVWALGNVAGDSPSCRDLV-LSSGALMPLLAQLNE------HS-----KLSMLRNATWTLSNFCRGKPPTPFEQ  241 (384)
Q Consensus       174 ~~v~~~a~~~L~nl~~~~~~~~~~i-~~~g~i~~L~~~l~~------~~-----~~~~~~~a~~~L~~L~~~~~~~~~~~  241 (384)
                      ++-++.|+.-|+.=-...+.....+ ...|.+..|++-+..      .+     ...-.-+++..|-.++.+ |......
T Consensus        15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~F   93 (268)
T 2fv2_A           15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSAF   93 (268)
T ss_dssp             TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHHH
T ss_pred             chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhHH
Confidence            4457776666655333333322222 234555555443311      11     112234555555666665 6666666


Q ss_pred             hhchHH-HHHHhhccCC-----HhHHHHHHHHHHHhccC-ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714          242 VKPALP-ILQRLIHLND-----EEVLTDACWALSYLSDG-PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV  314 (384)
Q Consensus       242 ~~~~~~-~L~~lL~~~~-----~~i~~~a~~~l~~l~~~-~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (384)
                      +..-+| +|..+|+..+     +.++-.+++.++.+... +.+.+..+.+.+++|..++.+..++.--+.-|..++..|.
T Consensus        94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL  173 (268)
T 2fv2_A           94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL  173 (268)
T ss_dssp             HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence            655555 6777776554     46788899999998865 4577778889999999999999999988999999999987


Q ss_pred             cCChHHHHHHHH--------cCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 016714          315 TGDDAQTQFVID--------NGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHD  368 (384)
Q Consensus       315 ~~~~~~~~~i~~--------~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~  368 (384)
                      .. +.+..++-.        ..++..++.-+....++.+-|...++-..++. ++...+.+-
T Consensus       174 ~d-d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~aL~  233 (268)
T 2fv2_A          174 LD-DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRAREALR  233 (268)
T ss_dssp             HS-HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred             cc-chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence            52 322222211        12344444444333378888888888888886 555555554

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.32  E-value=0.21  Score=43.97  Aligned_cols=110  Identities=17%  Similarity=0.147  Sum_probs=87.4

Q ss_pred             HHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh-ccCCHhHHH
Q 016714          184 LGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI-HLNDEEVLT  262 (384)
Q Consensus       184 L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~i~~  262 (384)
                      |.|+.-++...-+-+...+++..+...+ +.++.++.++.+..|...+..+ ..........+|.+...+ .+++.++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence            4444445545667788888998888888 7778889999999998888763 222333477889888777 477899999


Q ss_pred             HHHHHHHHhccCChHHHHHHHHcCChHHHHHhc
Q 016714          263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELL  295 (384)
Q Consensus       263 ~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL  295 (384)
                      ...+.|+|...+.....+..+..|+++.|-...
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I  376 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTII  376 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence            999999999999888888888999999998876

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.24  E-value=0.23  Score=41.83  Aligned_cols=141  Identities=13%  Similarity=0.166  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC----hHHHHHHHHHHHHHhc-CCchhHHHHHhcCChHHH
Q 016714           91 QLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDM----PQLQFEAAWALTNVAS-GTSEHTRVVIEHGAVPMF  165 (384)
Q Consensus        91 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~----~~~~~~a~~~L~nl~~-~~~~~~~~i~~~g~i~~L  165 (384)
                      ...|+..|.-+++.  ++.+..++++++--.|..+|+..+.    +-++..++.+++.+.. ++++....+.+.+++|..
T Consensus        73 VcnaLaLlQcvAsh--petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC  150 (268)
T 2fv2_A           73 VCNALALLQCVASH--PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC  150 (268)
T ss_dssp             HHHHHHHHHHHHHC--TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHcC--cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence            34455556666653  7888889999988889999976542    4677888888888775 456777888899999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH------HHh-cCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          166 VQLLSSGSDDVREQAVWALGNVAGDSPSCRDL------VLS-SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       166 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~------i~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      ++.+..+++--+..|.+.+..|..++......      +.. ...+..++..+...+++.+.+++.++...|+.+
T Consensus       151 Lrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          151 LRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            99999999999999999999987665432211      111 113444555555666778888888888888876

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.10  E-value=0.083  Score=46.51  Aligned_cols=171  Identities=17%  Similarity=0.177  Sum_probs=114.3

Q ss_pred             HHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHH
Q 016714          141 ALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSML  220 (384)
Q Consensus       141 ~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~  220 (384)
                      -|.|+.-+++...+-+++..++..+...+.-++.++....+..|...+....-+..-+  ...+|-++..+..+.+.++.
T Consensus       265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdvv  342 (619)
T 3c2g_A          265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEVI  342 (619)
T ss_dssp             HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcceE
Confidence            3455666678999999999999999999999999999999999988864333221111  23577788888788899999


Q ss_pred             HHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcc-------CCHh-------HHHHHHHHHHHhcc------------
Q 016714          221 RNATWTLSNFCRGK-PPTPFEQVKPALPILQRLIHL-------NDEE-------VLTDACWALSYLSD------------  273 (384)
Q Consensus       221 ~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~lL~~-------~~~~-------i~~~a~~~l~~l~~------------  273 (384)
                      ......|+|...++ |-.......+.++.|-..+..       .+..       +...+++++.|..-            
T Consensus       343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~  422 (619)
T 3c2g_A          343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKT  422 (619)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCC
T ss_pred             EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCcccc
Confidence            99999999999987 545555558888887776532       2233       34444444444331            


Q ss_pred             -CCh--HHHHHHHHcCChHHHHHhcCCCC------hhhHHHHHHHHHHh
Q 016714          274 -GPN--DKIQAVIEAGVCPRLVELLMHPS------ATVLIPALRTVGNI  313 (384)
Q Consensus       274 -~~~--~~~~~~~~~g~~~~L~~lL~~~~------~~v~~~a~~~l~nl  313 (384)
                       +..  .+...+++..++..|+..|+.+.      -+++...++.+--+
T Consensus       423 ~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lv  471 (619)
T 3c2g_A          423 AGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILL  471 (619)
T ss_dssp             CCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHH
Confidence             111  22334455567788888875543      23455555554443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.02  E-value=0.21  Score=43.89  Aligned_cols=110  Identities=12%  Similarity=0.077  Sum_probs=71.7

Q ss_pred             HHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhc--CChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchh--h
Q 016714          121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEH--GAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR--D  196 (384)
Q Consensus       121 ~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~--~  196 (384)
                      .+...+.++..+..+.-++++++|+... +..+..+...  .+++.+...+.+++..++..++.++.|++...-..+  +
T Consensus       151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~  229 (304)
T 3ebb_A          151 HLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE  229 (304)
T ss_dssp             HHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCch
Confidence            4445554444477899999999999885 6666666642  244555556566789999999999999984211000  1


Q ss_pred             HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      ....  .+..+..++....+.+....++-+|.+|...
T Consensus       230 ~~~~--ll~~l~~il~~~~d~EalyR~LvALGtL~~~  264 (304)
T 3ebb_A          230 GKAQ--CLSLISTILEVVQDLEATFRLLVALGTLISD  264 (304)
T ss_dssp             HHHH--HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHH--HHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence            1111  3334444554455778888888888888875

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=94.86  E-value=0.72  Score=42.66  Aligned_cols=118  Identities=18%  Similarity=0.042  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHh
Q 016714          132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQL  211 (384)
Q Consensus       132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l  211 (384)
                      +..+..|+..+......-++..+     .++..++.+..+++..||.+|+..|..+|.+ . .-.     .+.+.|.++|
T Consensus        42 ~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~-----kiaDvL~QlL  109 (507)
T 3u0r_A           42 TKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLP-----RVADILTQLL  109 (507)
T ss_dssp             HHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHH-----HHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhh-----hHHHHHHHHH
Confidence            78888888888888777666554     3567888999999999999999999999988 3 212     2567889999


Q ss_pred             cccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHH
Q 016714          212 NEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALS  269 (384)
Q Consensus       212 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~  269 (384)
                       +..+..-...+-++|..|...+|       .+.+..+...+.++++.++..++.-|.
T Consensus       110 -qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~  159 (507)
T 3u0r_A          110 -QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLS  159 (507)
T ss_dssp             -TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             -hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHH
Confidence             45555445555666666655433       344444444454567778877776663

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=94.35  E-value=0.033  Score=47.33  Aligned_cols=159  Identities=18%  Similarity=0.139  Sum_probs=86.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHH
Q 016714           78 SMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVI  157 (384)
Q Consensus        78 ~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~  157 (384)
                      .+..+++++++.++..++..+    .               .+.|..++.+++ +.++..++..+   .           
T Consensus        78 ~l~~L~~D~~~~VR~~aA~~L----~---------------~~~L~~ll~D~d-~~VR~~aA~~l---~-----------  123 (244)
T 1lrv_A           78 ALTPLIRDSDEVVRRAVAYRL----P---------------REQLSALMFDED-REVRITVADRL---P-----------  123 (244)
T ss_dssp             GGGGGTTCSSHHHHHHHHTTS----C---------------SGGGGGTTTCSC-HHHHHHHHHHS---C-----------
T ss_pred             HHHHHccCcCHHHHHHHHHHC----C---------------HHHHHHHHcCCC-HHHHHHHHHhC---C-----------
Confidence            355566777888888777532    1               123555666666 67777666632   0           


Q ss_pred             hcCChHHHHHhhcCCCHHHHHHHHHHHH-----hhhCC-CCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714          158 EHGAVPMFVQLLSSGSDDVREQAVWALG-----NVAGD-SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC  231 (384)
Q Consensus       158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~-----nl~~~-~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~  231 (384)
                          .+.|..++++++..|+..++..+.     .+..| ++.+|..+... ..+.++..+..+.+..++..++..+    
T Consensus       124 ----~~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~VR~~aa~~-l~~~ll~~ll~D~d~~VR~aaa~~l----  194 (244)
T 1lrv_A          124 ----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKR-LPEESLGLMTQDPEPEVRRIVASRL----  194 (244)
T ss_dssp             ----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHH-SCGGGGGGSTTCSSHHHHHHHHHHC----
T ss_pred             ----HHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHhC----
Confidence                122333444555555555544211     01111 11122222211 1122332333666677777766542    


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714          232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG  311 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~  311 (384)
                                   ..+.|..++..+++.|+..+...++                  .+.|..+ .+++..|+..+...||
T Consensus       195 -------------~~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          195 -------------RGDDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             -------------CGGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             -------------CHHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence                         1246778889999999999888753                  2455555 8888999988876554

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=94.14  E-value=0.97  Score=46.90  Aligned_cols=220  Identities=11%  Similarity=0.077  Sum_probs=135.4

Q ss_pred             hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcC----
Q 016714           73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASG----  148 (384)
Q Consensus        73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~----  148 (384)
                      +..++.++..+.+++++.+..|-..|..+-.   ++.        ..+.+..+|..+.++.++.-|+..|.+....    
T Consensus        27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~---sp~--------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~   95 (1073)
T 3gjx_A           27 INLLDNVVNCLYHGEGAQQRMAQEVLTHLKE---HPD--------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI   95 (1073)
T ss_dssp             HHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC---CSC--------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc---Cch--------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence            4567888888888888888888888875522   222        2444555565554589999999999887552    


Q ss_pred             -CchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHhhhCC-CCc-hhhHHHhcCChHHHHHHhcccchhHHH
Q 016714          149 -TSEHTRVVIEHGAVPMFVQLLSS-----GSDDVREQAVWALGNVAGD-SPS-CRDLVLSSGALMPLLAQLNEHSKLSML  220 (384)
Q Consensus       149 -~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~-~~~-~~~~i~~~g~i~~L~~~l~~~~~~~~~  220 (384)
                       +++.+..+ +..++..+...-.+     .++.++.+.+.++..++.. .|. .      .+.++.++..+..  ++...
T Consensus        96 L~~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W------p~fi~dLv~~~~~--~~~~~  166 (1073)
T 3gjx_A           96 LPRNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW------PTFISDIVGASRT--SESLC  166 (1073)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC------TTHHHHHHHHHHH--CHHHH
T ss_pred             CCHHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc------cHHHHHHHHHhCC--CHHHH
Confidence             23343333 33455666554333     3467778888888888742 111 1      1245556666522  23445


Q ss_pred             HHHHHHHhhhhcCCCCC-----C-------hhhh----hchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChHHHHHHH
Q 016714          221 RNATWTLSNFCRGKPPT-----P-------FEQV----KPALPILQRLIH-LNDEEVLTDACWALSYLSDGPNDKIQAVI  283 (384)
Q Consensus       221 ~~a~~~L~~L~~~~~~~-----~-------~~~~----~~~~~~L~~lL~-~~~~~i~~~a~~~l~~l~~~~~~~~~~~~  283 (384)
                      ...+++|..|+..-...     .       ...+    ..+++.+..+|. ..++++...++.++..+..--+  ...++
T Consensus       167 ~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~  244 (1073)
T 3gjx_A          167 QNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIF  244 (1073)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhc
Confidence            56666666666541000     0       0111    223333444443 4567888888999988877643  34577


Q ss_pred             HcCChHHH-HHhcCCCChhhHHHHHHHHHHhhcC
Q 016714          284 EAGVCPRL-VELLMHPSATVLIPALRTVGNIVTG  316 (384)
Q Consensus       284 ~~g~~~~L-~~lL~~~~~~v~~~a~~~l~nl~~~  316 (384)
                      +.++++.+ ..+|.  ++.++..|+.||..|+..
T Consensus       245 ~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k  276 (1073)
T 3gjx_A          245 ETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGV  276 (1073)
T ss_dssp             SSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHS
T ss_pred             cchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhc
Confidence            88889988 46664  567899999999999864

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.73  E-value=1.9  Score=44.90  Aligned_cols=166  Identities=16%  Similarity=0.190  Sum_probs=108.1

Q ss_pred             ChHHHHHhhcC----CCHHHHHHHHHHHHhhhC----CCCchhhHHHhcCChHHHHHHhc---ccchhHHHHHHHHHHhh
Q 016714          161 AVPMFVQLLSS----GSDDVREQAVWALGNVAG----DSPSCRDLVLSSGALMPLLAQLN---EHSKLSMLRNATWTLSN  229 (384)
Q Consensus       161 ~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~~~~i~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~  229 (384)
                      .+..+..++.+    .++.+++.++.+++++..    +.+.+..     ..++++.+.+.   ...+.+-...++.+|.|
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN  466 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGN  466 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence            34455566654    567888999999988863    3222221     23455554442   33356667788899999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcc-------CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc--CCCCh
Q 016714          230 FCRGKPPTPFEQVKPALPILQRLIHL-------NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL--MHPSA  300 (384)
Q Consensus       230 L~~~~~~~~~~~~~~~~~~L~~lL~~-------~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL--~~~~~  300 (384)
                      +...          ..++.|.+++..       ....++..|+|+|..+....+..+.        +.+.++.  ...++
T Consensus       467 ~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~  528 (1056)
T 1lsh_A          467 AGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKS  528 (1056)
T ss_dssp             HTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCH
T ss_pred             cCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCCh
Confidence            8863          456777777642       2356889999999999877654443        4566666  45678


Q ss_pred             hhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714          301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG  359 (384)
Q Consensus       301 ~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  359 (384)
                      ++|..|+..|-.-   +|..       ..+..+...+....+..+.....-.|.+++..
T Consensus       529 EvRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s  577 (1056)
T 1lsh_A          529 ELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  577 (1056)
T ss_dssp             HHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence            8998888877432   2211       13445666777655778888888888888874

>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B

Probab=93.11  E-value=0.074  Score=30.44  Aligned_cols=38  Identities=37%  Similarity=0.542  Sum_probs=28.3

Q ss_pred             HHhccCCC-CCCcHHHHHhHHHHHHHHHHHhhhHHHHhhhh
Q 016714           11 VRKKGYKT-GVDADEARRRREDNLVEIRKNKREDNLLKKRR   50 (384)
Q Consensus        11 ~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~   50 (384)
                      .|...||+ +...++..++|+  ..+..|++|-+.++.-|+
T Consensus         2 PR~sqYK~k~~~~~q~~rRr~--~L~~QK~~R~D~~nhaR~   40 (40)
T 2p8q_B            2 PRLSQYKSKYSSLEQSERRRR--LLELQKSKRLDYVNHARR   40 (40)
T ss_dssp             CCGGGTTCCCCSCSTTHHHHH--HHHHHHHHHHHHHHTTTC
T ss_pred             ccHHhhccccchhhHHHHHHH--HHHHHHHHHHHHHHHhcC
Confidence            47788998 566556555554  579999999999887764

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=91.87  E-value=4.9  Score=33.51  Aligned_cols=168  Identities=11%  Similarity=0.159  Sum_probs=100.1

Q ss_pred             CchhHHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchh
Q 016714          149 TSEHTRVVIEHGAVPMFVQLLSS-----------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKL  217 (384)
Q Consensus       149 ~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~  217 (384)
                      .....+.+ ..+++..|+.+|..           .+......++.||..+.-........+...+.+..+...| .++++
T Consensus        33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~  110 (233)
T 2f31_A           33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVP  110 (233)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSH
T ss_pred             CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCc
Confidence            34555556 35677777777642           1356778888999888766555545444555677777777 67778


Q ss_pred             HHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC
Q 016714          218 SMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH  297 (384)
Q Consensus       218 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~  297 (384)
                      .++..++..|+.+|..+...      |..+.++..+.+               ..        ..-+..-+..++..|..
T Consensus       111 ~~r~~~leLL~~lc~~~~~~------G~~~~VL~Al~~---------------~~--------~~~e~~RF~~lv~~l~~  161 (233)
T 2f31_A          111 NMMIDAAKLLSALCILPQPE------DMNERVLEAMTE---------------RA--------EMDEVERFQPLLDGLKS  161 (233)
T ss_dssp             HHHHHHHHHHHHHHTCSSSS------CHHHHHHHHHHH---------------HH--------HHHTSCTTHHHHHTTST
T ss_pred             hHHHHHHHHHHHHHhCCCCC------ChHHHHHHHHHH---------------HH--------HhCCcchHHHHHHHHhc
Confidence            88888888898888874311      102222222221               10        01122345566666753


Q ss_pred             -CChhhHHHHHHHHHHhhcCChH------HHHHHHHcCchHHHHHHhccCCchhHHHH
Q 016714          298 -PSATVLIPALRTVGNIVTGDDA------QTQFVIDNGVLPCLYQLLTQNHKKSIKKE  348 (384)
Q Consensus       298 -~~~~v~~~a~~~l~nl~~~~~~------~~~~i~~~g~l~~L~~ll~~~~~~~v~~~  348 (384)
                       .+.+.+..++..+..++.+.++      ....+...|+.+.+-.+=... ++.+...
T Consensus       162 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~-~~~L~~Q  218 (233)
T 2f31_A          162 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMKVQ  218 (233)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCC-CHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC-CHHHHHH
Confidence             4556667777777777766442      234455678777776665444 5555544

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=91.53  E-value=16  Score=38.65  Aligned_cols=258  Identities=9%  Similarity=0.038  Sum_probs=144.0

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHhcC----
Q 016714           76 IPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLG-RHDMPQLQFEAAWALTNVASG----  148 (384)
Q Consensus        76 l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~nl~~~----  148 (384)
                      +..++..+.+.  +.+.+.+|-..|..+-..  +         .....+...|. .+.++.++..|+..|.+....    
T Consensus        13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~   81 (1204)
T 3a6p_A           13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG   81 (1204)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence            55556555554  667788888888766332  1         13444444443 333389999999999987532    


Q ss_pred             -CchhHHHHHhcCChHHHHHhhc---CCCHHHHHHHHHHHHhhhCCC-C-chhhHHHhcCChHHHHHHhcccchhHHHHH
Q 016714          149 -TSEHTRVVIEHGAVPMFVQLLS---SGSDDVREQAVWALGNVAGDS-P-SCRDLVLSSGALMPLLAQLNEHSKLSMLRN  222 (384)
Q Consensus       149 -~~~~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~nl~~~~-~-~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~  222 (384)
                       +++.+..+. ..++..+.....   ..+..++.+.+.++..|+... | ..      .+.++.|+..+..  +......
T Consensus        82 l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W------p~ll~~L~~~~~~--~~~~~e~  152 (1204)
T 3a6p_A           82 MSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW------PDMLIELDTLSKQ--GETQTEL  152 (1204)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC------TTHHHHHHHHHHT--CHHHHHH
T ss_pred             CCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHhcC--CHHHHHH
Confidence             233443333 344555444321   146889999999999987432 2 12      2356677777733  3344666


Q ss_pred             HHHHHhhhhcCC---CCCChhh-------h----hchHHHHHHhhcc-------------------CCHhHHHHHHHHHH
Q 016714          223 ATWTLSNFCRGK---PPTPFEQ-------V----KPALPILQRLIHL-------------------NDEEVLTDACWALS  269 (384)
Q Consensus       223 a~~~L~~L~~~~---~~~~~~~-------~----~~~~~~L~~lL~~-------------------~~~~i~~~a~~~l~  269 (384)
                      ++.+|..++..-   .......       +    ..+++.+..++..                   .+..+...++.++.
T Consensus       153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~  232 (1204)
T 3a6p_A          153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA  232 (1204)
T ss_dssp             HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence            777777776531   1111110       1    1334444444432                   12446677788887


Q ss_pred             HhccCChHHHHHHHHcC--ChHHHHHhcCCCChhhHHHHHHHHHHhhcCC--hHHHHHHHHc---CchHHHHHHhc----
Q 016714          270 YLSDGPNDKIQAVIEAG--VCPRLVELLMHPSATVLIPALRTVGNIVTGD--DAQTQFVIDN---GVLPCLYQLLT----  338 (384)
Q Consensus       270 ~l~~~~~~~~~~~~~~g--~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~--~~~~~~i~~~---g~l~~L~~ll~----  338 (384)
                      +....-+.  ..+.+..  +++.+..++.  ++.++..|+.+|..++...  ++....++..   ..+..++....    
T Consensus       233 ~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~  308 (1204)
T 3a6p_A          233 GYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADG  308 (1204)
T ss_dssp             TTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCC
T ss_pred             HHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence            66554332  2333433  6777777665  4678999999999998754  2322222221   11233444432    


Q ss_pred             ---cCCchhHHHHHHHHHHHHh
Q 016714          339 ---QNHKKSIKKEACWTISNIT  357 (384)
Q Consensus       339 ---~~~~~~v~~~a~~~L~nl~  357 (384)
                         +.++.++.+..+..+..++
T Consensus       309 ~~~~e~d~e~~k~l~~ll~~lg  330 (1204)
T 3a6p_A          309 GGLVEKHYVFLKRLCQVLCALG  330 (1204)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHHHH
Confidence               1114567777777777776

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=91.38  E-value=8  Score=40.23  Aligned_cols=133  Identities=18%  Similarity=0.200  Sum_probs=84.8

Q ss_pred             hHHHHHHhccc---chhHHHHHHHHHH----hhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh
Q 016714          204 LMPLLAQLNEH---SKLSMLRNATWTL----SNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN  276 (384)
Q Consensus       204 i~~L~~~l~~~---~~~~~~~~a~~~L----~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~  276 (384)
                      +..+..++...   .++.+...+..++    ...|...+.+....+..+...+.+.+...+.+-..-++.+|+|+-..  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence            34455555322   2334444444444    44555544444455666777777778888888889999999998542  


Q ss_pred             HHHHHHHHcCChHHHHHhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhc-cCCchhHHHH
Q 016714          277 DKIQAVIEAGVCPRLVELLMH-------PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLT-QNHKKSIKKE  348 (384)
Q Consensus       277 ~~~~~~~~~g~~~~L~~lL~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~-~~~~~~v~~~  348 (384)
                               ..++.|.+++..       ....++..|+++|.+++...+...+        +.+.++.. ...++++|-.
T Consensus       471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence                     245667777632       2346788899999999976665544        34556663 2337889999


Q ss_pred             HHHHHHH
Q 016714          349 ACWTISN  355 (384)
Q Consensus       349 a~~~L~n  355 (384)
                      |++.|..
T Consensus       534 A~~~Lm~  540 (1056)
T 1lsh_A          534 SCIVFFE  540 (1056)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888854

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=90.85  E-value=9.1  Score=34.63  Aligned_cols=157  Identities=11%  Similarity=0.160  Sum_probs=95.5

Q ss_pred             CchhHHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchh
Q 016714          149 TSEHTRVVIEHGAVPMFVQLLSS-----------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKL  217 (384)
Q Consensus       149 ~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~  217 (384)
                      .....+.++ .+++..|+.+|..           .+......++.||..+.-........+.....+..|...+ .+..+
T Consensus        99 ~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~  176 (383)
T 3eg5_B           99 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVP  176 (383)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSH
T ss_pred             ccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCch
Confidence            345556665 5667888877741           2457788889999888765554545555556777788887 67778


Q ss_pred             HHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC
Q 016714          218 SMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH  297 (384)
Q Consensus       218 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~  297 (384)
                      .+...++..|+.+|......      |+.+.++..+               .++..        ..+..-+..++..|..
T Consensus       177 ~~~~~aleLL~~lc~~~~~~------gG~~~VL~Al---------------~~~~~--------~~e~~RF~~lv~~L~~  227 (383)
T 3eg5_B          177 NMMIDAAKLLSALCILPQPE------DMNERVLEAM---------------TERAE--------MDEVERFQPLLDGLKS  227 (383)
T ss_dssp             HHHHHHHHHHHHHHTCCSST------THHHHHHHHH---------------HHHHH--------HHTSCTTHHHHHTTST
T ss_pred             HHHHHHHHHHHHHHhCcCcC------CcHHHHHHHH---------------HHHHH--------hCCCCcHHHHHHHHHc
Confidence            88888999999999874211      1222222222               11110        1223445667777765


Q ss_pred             -CChhhHHHHHHHHHHhhcCCh------HHHHHHHHcCchHHHHHH
Q 016714          298 -PSATVLIPALRTVGNIVTGDD------AQTQFVIDNGVLPCLYQL  336 (384)
Q Consensus       298 -~~~~v~~~a~~~l~nl~~~~~------~~~~~i~~~g~l~~L~~l  336 (384)
                       .+...+..++..|..++.+.+      .....+...|+.+.+-.+
T Consensus       228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l  273 (383)
T 3eg5_B          228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL  273 (383)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence             456666667777766766543      223345567777776663

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=90.13  E-value=10  Score=34.16  Aligned_cols=89  Identities=10%  Similarity=0.149  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh
Q 016714           89 ALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL  168 (384)
Q Consensus        89 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l  168 (384)
                      ..+...+..++.++-.. ++.    +-.++++.++++-.+.+ .+++...+..|...+....+.   +  ..+++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el---~--~~~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIEL---L--LKLIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGG---H--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHH
Confidence            47888889999876543 332    23568999999988887 899999999998887643333   2  2357788888


Q ss_pred             hcCCCHHHHHHHHHHHHhhh
Q 016714          169 LSSGSDDVREQAVWALGNVA  188 (384)
Q Consensus       169 L~~~~~~v~~~a~~~L~nl~  188 (384)
                      |.++++.+...++.+.+++.
T Consensus       109 L~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHH
Confidence            99899999999998888873

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=89.40  E-value=9.1  Score=32.43  Aligned_cols=100  Identities=10%  Similarity=0.108  Sum_probs=69.5

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHH
Q 016714           78 SMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVI  157 (384)
Q Consensus        78 ~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~  157 (384)
                      .+++.-+..........+...+.++... ++.   ++ ..+++.++++-.+++ .+++...+..+...+....+..    
T Consensus        19 ~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~---ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~----   88 (257)
T 3gs3_A           19 DWCNELVIASPSTKCELLAKVQETVLGS-CAE---LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELL----   88 (257)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGG---GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGH----
T ss_pred             HHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHh---HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHH----
Confidence            3333333433368888999999877653 222   11 346777888766666 8999999999988875433221    


Q ss_pred             hcCChHHHHHhhcCCCHHHHHHHHHHHHhhh
Q 016714          158 EHGAVPMFVQLLSSGSDDVREQAVWALGNVA  188 (384)
Q Consensus       158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  188 (384)
                       ..+++.|..++.++++.+...++.+..++.
T Consensus        89 -~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY  118 (257)
T 3gs3_A           89 -PHVINVVSMLLRDNSAQVIKRVIQACGSIY  118 (257)
T ss_dssp             -HHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence             235778888999999999999998888763

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=89.20  E-value=7.5  Score=35.82  Aligned_cols=229  Identities=14%  Similarity=0.107  Sum_probs=121.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC-----c
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGT-----S  150 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~-----~  150 (384)
                      +..|+..+.|+|+..+...-..|..+...  -...+.++...+-..+..++.......-..+.+.+++.|..|-     .
T Consensus       164 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe  241 (449)
T 2npp_B          164 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  241 (449)
T ss_dssp             HHHHHHTTTSSTHHHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence            66788888899988887777777766543  3334444444445556666644332345667888888887763     2


Q ss_pred             hhHHHHHhcCChHHHHHhhcCCCHH-HHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714          151 EHTRVVIEHGAVPMFVQLLSSGSDD-VREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN  229 (384)
Q Consensus       151 ~~~~~i~~~g~i~~L~~lL~~~~~~-v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~  229 (384)
                      +.+..+     ...|+.+.+..... --.+..+++..+...++.....     ++..|++.= ...+..=....+.-|..
T Consensus       242 ehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~elee  310 (449)
T 2npp_B          242 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE  310 (449)
T ss_dssp             HHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHHHH
Confidence            333222     23334444433322 2234556666655555433222     222232222 11122111223333444


Q ss_pred             hhcCCCCCChh-hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHH--cCChHHHHHhc-----CCCChh
Q 016714          230 FCRGKPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIE--AGVCPRLVELL-----MHPSAT  301 (384)
Q Consensus       230 L~~~~~~~~~~-~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~--~g~~~~L~~lL-----~~~~~~  301 (384)
                      +...-+...+. ....++..+...+.+++..|.+.|+....|     +.....+.+  ..++|.+..-|     .|-+..
T Consensus       311 ile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~  385 (449)
T 2npp_B          311 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYIMSLISDNAAKILPIMFPSLYRNSKTHWNKT  385 (449)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTT
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHH
Confidence            44433222232 236677778888899888888887644322     111212111  12456666655     234678


Q ss_pred             hHHHHHHHHHHhhcCChHHHH
Q 016714          302 VLIPALRTVGNIVTGDDAQTQ  322 (384)
Q Consensus       302 v~~~a~~~l~nl~~~~~~~~~  322 (384)
                      ++..+..++.-+...++...+
T Consensus       386 V~~la~~vlk~l~e~d~~lf~  406 (449)
T 2npp_B          386 IHGLIYNALKLFMEMNQKLFD  406 (449)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCHHHHH
Confidence            999999999888776665443

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=88.47  E-value=6.9  Score=35.49  Aligned_cols=224  Identities=14%  Similarity=0.124  Sum_probs=111.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc-----
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS-----  150 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~-----  150 (384)
                      +-.|+..+.|+|+..+...-..|..+...  -...+.++...+-..+..++-.+..-.-..+.+.+++.+..|-.     
T Consensus       131 i~~Ll~lfdSeDprER~~LktiLhrIY~k--f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke  208 (403)
T 3fga_B          131 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  208 (403)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence            56677788888888777777767665432  23334444444445566655433222344567777777766532     


Q ss_pred             hhHHHHHhcCChHHHHHhhcCCCHH-HHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714          151 EHTRVVIEHGAVPMFVQLLSSGSDD-VREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN  229 (384)
Q Consensus       151 ~~~~~i~~~g~i~~L~~lL~~~~~~-v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~  229 (384)
                      +.+..+.     ..|+.+-+..... --.+..+++..+...++.....     ++..|++.= ...+..=....+.-+..
T Consensus       209 ehk~fl~-----~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~Ele~  277 (403)
T 3fga_B          209 EHKIFLL-----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE  277 (403)
T ss_dssp             HHHHHHH-----HTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCcHHHHHHHHHHHH
Confidence            3222222     2333333332222 2245556666666555543222     122222222 11122211223333444


Q ss_pred             hhcCCCCCChhh-hhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHHhc-----CCCCh
Q 016714          230 FCRGKPPTPFEQ-VKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA---GVCPRLVELL-----MHPSA  300 (384)
Q Consensus       230 L~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~---g~~~~L~~lL-----~~~~~  300 (384)
                      +...-+...+.. ...++..+...+.+++..|.+.|+....+     +... .++..   .++|.+...|     .|-+.
T Consensus       278 iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnN-----e~i~-~li~~n~~~IlPii~p~L~~~~~~HWn~  351 (403)
T 3fga_B          278 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYIM-SLISDNAAKILPIMFPSLYRNSKTHWNK  351 (403)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHH-HHHHTTHHHHHHHHHHHHHHTTSCCSCH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcc-----HHHH-HHHHHhHHHHHHHHHHHHHHHHHHccCH
Confidence            444332222222 25667777888888888888877644311     1111 12211   2344443333     34578


Q ss_pred             hhHHHHHHHHHHhhcCCh
Q 016714          301 TVLIPALRTVGNIVTGDD  318 (384)
Q Consensus       301 ~v~~~a~~~l~nl~~~~~  318 (384)
                      .++..++.++.-+...++
T Consensus       352 ~v~~l~~~vlk~l~e~d~  369 (403)
T 3fga_B          352 TIHGLIYNALKLFMEMNQ  369 (403)
T ss_dssp             HHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHhCH
Confidence            888888888887765443

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=86.76  E-value=18  Score=32.73  Aligned_cols=151  Identities=11%  Similarity=0.120  Sum_probs=94.6

Q ss_pred             chhHHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhH
Q 016714          150 SEHTRVVIEHGAVPMFVQLLSS-----------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLS  218 (384)
Q Consensus       150 ~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~  218 (384)
                      ......+. .+++..|+.+|..           .+......++.||..+.-........+...+++..+...| .+..+.
T Consensus        38 ~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL-~s~~~~  115 (386)
T 2bnx_A           38 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN  115 (386)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHH
T ss_pred             cHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHh-CCCCch
Confidence            44555554 4667777776642           1456788889999988766655555555556777777777 677778


Q ss_pred             HHHHHHHHHhhhhcCCCCCC-hhhhhc------------hHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChH------H
Q 016714          219 MLRNATWTLSNFCRGKPPTP-FEQVKP------------ALPILQRLIH-LNDEEVLTDACWALSYLSDGPND------K  278 (384)
Q Consensus       219 ~~~~a~~~L~~L~~~~~~~~-~~~~~~------------~~~~L~~lL~-~~~~~i~~~a~~~l~~l~~~~~~------~  278 (384)
                      +...++..|..+|......- ...+-.            -+..++..+. +.+.++...++..|..+....++      .
T Consensus       116 ~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~L  195 (386)
T 2bnx_A          116 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI  195 (386)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence            88888888988998753211 222211            2233555554 45677888888888777776552      1


Q ss_pred             HHHHHHcCChHHHHHhcCCCChhh
Q 016714          279 IQAVIEAGVCPRLVELLMHPSATV  302 (384)
Q Consensus       279 ~~~~~~~g~~~~L~~lL~~~~~~v  302 (384)
                      ...+...|+.+.+-.+=...++.+
T Consensus       196 R~Ef~~~GL~~il~~Lr~~~~~~L  219 (386)
T 2bnx_A          196 RSELMRLGLHQVLQELREIENEDM  219 (386)
T ss_dssp             HHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHCChHHHHHHHhccCChhH
Confidence            223556676666655544444443

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=85.34  E-value=15  Score=38.73  Aligned_cols=202  Identities=13%  Similarity=0.095  Sum_probs=117.3

Q ss_pred             hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhh--cCCCHHHHHHHHHHHHhhhCC-----CCchhhHHHhcCCh
Q 016714          132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL--SSGSDDVREQAVWALGNVAGD-----SPSCRDLVLSSGAL  204 (384)
Q Consensus       132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~i~~~g~i  204 (384)
                      ++.+.+|-..|..+-..          ..+...+...|  .+.+..++..|+..|-|....     +++.+..+.     
T Consensus        27 ~~~r~~Ae~~L~~~~~~----------p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-----   91 (1204)
T 3a6p_A           27 QRYRLEALKFCEEFKEK----------CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-----   91 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHH----------CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred             hHHHHHHHHHHHHHHhC----------chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence            67788887777766442          12344444433  356789999999999987632     122222222     


Q ss_pred             HHHHHHhccc------chhHHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC---
Q 016714          205 MPLLAQLNEH------SKLSMLRNATWTLSNFCRGK-PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG---  274 (384)
Q Consensus       205 ~~L~~~l~~~------~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~---  274 (384)
                      ..++..+...      .+..++..++.+++.+.... |..    -..+++.++.++.+ ++.....++.+|..++..   
T Consensus        92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~  166 (1204)
T 3a6p_A           92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT  166 (1204)
T ss_dssp             HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence            2344444322      34567777888888887754 321    24677888887765 455566777787777642   


Q ss_pred             ----ChHHHH----HHHHc--CChHHHHHhcCC-------------------CChhhHHHHHHHHHHhhcCChHHHHHHH
Q 016714          275 ----PNDKIQ----AVIEA--GVCPRLVELLMH-------------------PSATVLIPALRTVGNIVTGDDAQTQFVI  325 (384)
Q Consensus       275 ----~~~~~~----~~~~~--g~~~~L~~lL~~-------------------~~~~v~~~a~~~l~nl~~~~~~~~~~i~  325 (384)
                          ...+..    .+.+.  .++..+..+|..                   .+..+...++.++.+....-+-  ..++
T Consensus       167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~  244 (1204)
T 3a6p_A          167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHIT  244 (1204)
T ss_dssp             SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHH
Confidence                111111    11111  223333333322                   1234667788888877655432  2233


Q ss_pred             HcC--chHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          326 DNG--VLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       326 ~~g--~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      +..  +++.+..++.   ++.++..|+-+|..++.
T Consensus       245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s  276 (1204)
T 3a6p_A          245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVS  276 (1204)
T ss_dssp             TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHT
T ss_pred             hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHh
Confidence            332  6777776654   45789999999999997

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=81.75  E-value=17  Score=31.48  Aligned_cols=146  Identities=10%  Similarity=0.019  Sum_probs=86.9

Q ss_pred             HHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCCcHHHHHH--cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 016714           76 IPSMVQGVWSE------DPALQLEATTQFRKLLSIERSPPIDEVIK--AGVVPRFVEFLGRHDMPQLQFEAAWALTNVAS  147 (384)
Q Consensus        76 l~~lv~~l~s~------~~~~~~~a~~~l~~l~s~~~~~~~~~~~~--~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~  147 (384)
                      ...+...++++      +......|+..|..+.. + -...-.+++  ..++..|+ +....+ +.+++.|+++++....
T Consensus        24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-D-i~~G~KI~~~ef~lL~nL~-~~~~~~-~~~rE~aarII~ssLR   99 (315)
T 3qml_C           24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-D-YKHGYKIITHEFALLANLS-LNENLP-LTLRELSTRVITSCLR   99 (315)
T ss_dssp             HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-S-HHHHHHHHHHHHHHHHHHH-HCTTSC-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-h-HHhhhHHHhCcHHHHHHHH-hhccCC-hhHHHHHHHHHHHHHc
Confidence            44555566655      33445556666665532 2 333334443  23333444 333444 7899999999999999


Q ss_pred             CCchhHHHHHhc--CChHHHHHhhcC-------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc--h
Q 016714          148 GTSEHTRVVIEH--GAVPMFVQLLSS-------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS--K  216 (384)
Q Consensus       148 ~~~~~~~~i~~~--g~i~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~--~  216 (384)
                      .||...+.+.+.  ..+..++.-|..       ....++..-+.+|.-|..++..+     ...++..|.+++. ..  +
T Consensus       100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~-~~~~d  173 (315)
T 3qml_C          100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYE-RNNKD  173 (315)
T ss_dssp             TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHH-HTTTC
T ss_pred             cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHc-cCCCC
Confidence            999999988873  334444433322       23456666677777787765433     1346677777773 34  6


Q ss_pred             hHHHHHHHHHHhhhh
Q 016714          217 LSMLRNATWTLSNFC  231 (384)
Q Consensus       217 ~~~~~~a~~~L~~L~  231 (384)
                      ..++..++..+..+-
T Consensus       174 ~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          174 KQLQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            667777766666555

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=81.05  E-value=28  Score=32.10  Aligned_cols=192  Identities=11%  Similarity=0.078  Sum_probs=92.6

Q ss_pred             HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                      .+..++...+..|+.++.++++.-|+..-.+|..|-+.-...|..+... +-..+.+.+.......-...++..+..+..
T Consensus       155 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIin  233 (449)
T 2npp_B          155 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIIN  233 (449)
T ss_dssp             GGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHHS
T ss_pred             hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHHh
Confidence            3445555678889999999999999999999988876655555544432 233444444222222223344555555555


Q ss_pred             CCCCCChhhh-hchHHHHHHhhccCCH-hHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714          233 GKPPTPFEQV-KPALPILQRLIHLNDE-EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV  310 (384)
Q Consensus       233 ~~~~~~~~~~-~~~~~~L~~lL~~~~~-~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l  310 (384)
                      +-..+-.+.. .-....|+.+.....- ........|+......++.....     ++..|++.=-..++.=...-+.-|
T Consensus       234 Gfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~el  308 (449)
T 2npp_B          234 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNEL  308 (449)
T ss_dssp             SCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred             ccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHHHHH
Confidence            5422221222 2222334444433321 12223334444443333332222     123333332222322222334444


Q ss_pred             HHhhcC-ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHH
Q 016714          311 GNIVTG-DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWT  352 (384)
Q Consensus       311 ~nl~~~-~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~  352 (384)
                      ..+... .+...+.+.. .++..+...+.++ ...|.+.|...
T Consensus       309 eeile~~~~~ef~~i~~-~lF~~la~ci~S~-hfqVAErAL~~  349 (449)
T 2npp_B          309 EEILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYY  349 (449)
T ss_dssp             HHHHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGG
T ss_pred             HHHHHhCCHHHHHHHHH-HHHHHHHHHHcCC-CHHHHHHHHHH
Confidence            444432 3333333332 3566666667666 66666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	8e-84
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-11
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-06
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	4e-05
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	7e-52
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-15
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-11
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	9e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-34
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	8e-17
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-14
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-11
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-11
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-21
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-17
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-07
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-09
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	6e-09
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	7e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-08
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	9e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-04
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	9e-04
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	3e-06
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	0.002
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	3e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	5e-04

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  261 bits (668), Expect = 8e-84
 Identities = 195/365 (53%), Positives = 243/365 (66%), Gaps = 11/365 (3%)

Query: 10  EVRKKGYKT--GVDADEARRRREDNLVEIRKNKREDNLLKKRREGLL------LQPQQQG 61
           E R+  +K      ADE RRRR+   VE+RK KR++ L K+R            +  +  
Sbjct: 4   EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 63

Query: 62  LDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPR 121
           + A Q    +  + +P M Q + S+D   QL AT +FR++LS E  PPID VI+AGVVPR
Sbjct: 64  VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 123

Query: 122 FVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAV 181
            VEF+  +    LQ EAAWALTN+ASGTS  T+VV++  AVP+F+QLL +GS +V+EQA+
Sbjct: 124 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 183

Query: 182 WALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FE 240
           WALGNVAGDS   RD VL   A+ P+L  L   +K S++R ATWTLSN CRGK P P + 
Sbjct: 184 WALGNVAGDSTDYRDYVLQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 242

Query: 241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300
            V  ALP L +LI+  D E L DACWA+SYLSDGP + IQAVI+  +  RLVELL H S 
Sbjct: 243 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 302

Query: 301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
            V  PALR VGNIVTG+D QTQ VI+ GVLP L  LL  + K++IKKEACWTISNITAGN
Sbjct: 303 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGN 361

Query: 361 RAQIQ 365
             QIQ
Sbjct: 362 TEQIQ 366

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.4 bits (150), Expect = 3e-11
 Identities = 39/191 (20%), Positives = 80/191 (41%), Gaps = 18/191 (9%)

Query: 128 RHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV 187
            H+   +Q  A  A+ N+ +G    T+VVI  G +P    LLSS  ++++++A W + N+
Sbjct: 298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357

Query: 188 AGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVK---- 243
              +      V+ +  L+P L +L E ++    + A W +SN   G    P + ++    
Sbjct: 358 TAGNTEQIQAVIDAN-LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP-DIIRYLVS 415

Query: 244 -PALPILQRLIHLNDEEVLTDACWALSYL-----------SDGPNDKIQAVIEAGVCPRL 291
              +  L  L+ + D  ++     AL  +               N+    + +AG   ++
Sbjct: 416 QGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 475

Query: 292 VELLMHPSATV 302
                + +  +
Sbjct: 476 FNCQQNENDKI 486

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 5/152 (3%)

Query: 84  WSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALT 143
            S +  L      +    +          VI AGV+P     L       ++ EA W ++
Sbjct: 297 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTIS 355

Query: 144 NVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS---PSCRDLVLS 200
           N+ +G +E  + VI+   +P  V+LL       +++A WA+ N +      P     ++S
Sbjct: 356 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVS 415

Query: 201 SGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232
            G + PL   L       ++      L N  +
Sbjct: 416 QGCIKPLCDLLEIADN-RIIEVTLDALENILK 446

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQT-QFVIDNGVLPCLYQLLTQNHKKSIK 346
            P++ + L        + A      I++ +       VI  GV+P L + + +N  + ++
Sbjct: 78  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 137

Query: 347 KEACWTISNITAGNRAQIQV 366
            EA W ++NI +G  AQ +V
Sbjct: 138 LEAAWALTNIASGTSAQTKV 157

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  176 bits (447), Expect = 7e-52
 Identities = 159/302 (52%), Positives = 207/302 (68%), Gaps = 6/302 (1%)

Query: 75  SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
           S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +
Sbjct: 14  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73

Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
           QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S    + EQAVWALGN+AGD  + 
Sbjct: 74  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133

Query: 195 RDLVLSSGALMPLLAQLNEHS----KLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPIL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P P  + V+  LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193

Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
            RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253

Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDS 369
           +GNIVTG D QTQ VID G L     LL  N K +I+KEA WT+SNITAG + QIQ   +
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVN 312

Query: 370 FH 371
             
Sbjct: 313 HG 314

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.8 bits (182), Expect = 2e-15
 Identities = 36/233 (15%), Positives = 76/233 (32%), Gaps = 8/233 (3%)

Query: 159 HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS-CRDLVLSSGALMPLLAQLNEHSKL 217
           + +V   V+ ++S + + + QA  A   +         D ++ +G +   ++ L +    
Sbjct: 12  NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 71

Query: 218 SMLRNATWTLSNFCRGKPPTPFEQVKP-ALPILQRLIHLNDEEVLTDACWALSYLSDGPN 276
            +   + W L+N   G        V   A+P    L+      +   A WAL  ++   +
Sbjct: 72  PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 131

Query: 277 DKIQAVIEAGVCPRLVELLMH-----PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLP 331
                VI+ G    L+ LL        +   L     T+ N+    +          +LP
Sbjct: 132 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 191

Query: 332 CL-YQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLFVLHEDFSLYF 383
            L   L   + +         +        R ++ V       ++    +   
Sbjct: 192 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 244

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.9 bits (151), Expect = 2e-11
 Identities = 57/286 (19%), Positives = 103/286 (36%), Gaps = 7/286 (2%)

Query: 76  IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ-- 133
           IP+ +  + S    +  +A      +     S   D VIK G +   +  L   D+    
Sbjct: 101 IPAFISLLASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLA 159

Query: 134 --LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS 191
                   W L+N+    +    +      +P  V+LL     +V   + WA+  +    
Sbjct: 160 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 219

Query: 192 PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQR 251
               ++V+  G +  L+  L       +        +        T       AL +   
Sbjct: 220 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS 279

Query: 252 LIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG 311
           L+      +  +A W +S ++ G  D+IQ V+  G+ P LV +L          A   + 
Sbjct: 280 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT 339

Query: 312 NIVT-GDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI 356
           N  + G   Q  +++  G++  L  LL+    K I +     ISNI
Sbjct: 340 NYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK-IIQVILDAISNI 384

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (121), Expect = 9e-08
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 12/167 (7%)

Query: 112 EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS 171
           +VI AG +  F   L       +Q EA W ++N+ +G  +  + V+ HG VP  V +LS 
Sbjct: 267 KVIDAGALAVFPSLLTNPKT-NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 325

Query: 172 GSDDVREQAVWALGNVA-GDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF 230
                +++A WA+ N   G +      ++  G + PL+  L+      +++     +SN 
Sbjct: 326 ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILDAISNI 384

Query: 231 CRGKPPTP--------FEQVKPALPILQRLIHLNDEEVLTDACWALS 269
            +               E+    L  ++ L    +E V   +   + 
Sbjct: 385 FQAAEKLGETEKLSIMIEECG-GLDKIEALQRHENESVYKASLNLIE 430

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (323), Expect = 5e-34
 Identities = 42/255 (16%), Positives = 83/255 (32%), Gaps = 18/255 (7%)

Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
           +P+ V++L      + Q   A+ + +         + V + G +   V LL S + +V++
Sbjct: 4   IPKAVQYL-SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
            A  AL N+   S + +        +   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 239 FEQVKPALPILQRLI---------------HLNDEEVLTDACWALSYLSDGPNDKIQAVI 283
                    +  R+I                + D EV  +A   L  LS     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 284 EAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKK 343
            +G+   L+  + +  A       ++V N +      +   +D  V     QL       
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDD-KSVENCMCVLHNLSYR-LDAEVPTRYRQLEYNARNA 240

Query: 344 SIKKEACWTISNITA 358
             +K +    SN + 
Sbjct: 241 YTEKSSTGCFSNKSD 255

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 8e-17
 Identities = 20/132 (15%), Positives = 46/132 (34%)

Query: 246 LPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIP 305
           +P   + +   DE+      + + +         Q V + G   +LV+LL  P+  V   
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 306 ALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
           A   + N+V               +     LL +     I+K+    + N+++ +  + +
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 366 VHDSFHLFVLHE 377
           +       +   
Sbjct: 124 LIADALPVLADR 135

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 6e-14
 Identities = 38/238 (15%), Positives = 72/238 (30%), Gaps = 14/238 (5%)

Query: 131 MPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
           M  L   +      V +   +                  S+ SD +              
Sbjct: 212 MCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEET 271

Query: 191 SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVK------P 244
           +P     +  S A+   L  + +  K + L      L N    K        +       
Sbjct: 272 NPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEK 331

Query: 245 ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH------P 298
            LP + RL+   + +V+      LS +S   +  +  V+   V P +  LL         
Sbjct: 332 GLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSN 389

Query: 299 SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI 356
           S  +L  A  TV N++       +    + +L  +  L   +      + A   +S++
Sbjct: 390 SEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 2e-11
 Identities = 20/190 (10%), Positives = 51/190 (26%), Gaps = 15/190 (7%)

Query: 202 GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP-ALPILQRLIHLNDEEV 260
           G  +P   Q              + + + C        +  +   +  L  L+   ++ V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 261 LTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ 320
              A  AL  L                    V LL       +   L  +   ++  D  
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 321 TQFVIDNGVLPCLYQLL--------------TQNHKKSIKKEACWTISNITAGNRAQIQV 366
            + +I + +     +++               +     +   A   + N+++ +  +  +
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 367 HDSFHLFVLH 376
            +   L    
Sbjct: 181 RNYSGLIDSL 190

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 3e-11
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 9/129 (6%)

Query: 112 EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS 171
             +K   +P+    L +     +    A  L+N++         V+ +   P   +LL+S
Sbjct: 326 IGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTS 382

Query: 172 G------SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATW 225
                  S+D+   A + + N+    P       SS  L  ++      +       A  
Sbjct: 383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442

Query: 226 TLSNFCRGK 234
            LS+    K
Sbjct: 443 LLSDMWSSK 451

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.6 bits (231), Expect = 1e-22
 Identities = 44/259 (16%), Positives = 96/259 (37%), Gaps = 7/259 (2%)

Query: 104 IERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVP 163
           +E+      V+   + P   E     D  Q +  A   L ++              G   
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCENMDNAADFCQLSGMHL 62

Query: 164 MFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNA 223
           +  + L +G+  +R +A   +G  + +  + ++ VL  GAL  LL  L+  +  ++   A
Sbjct: 63  LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKA 122

Query: 224 TWTLSNFCRGKPPTPFEQVK-PALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAV 282
            + +S   R +     + ++     +L R +    +++   + + L  L  G  +    +
Sbjct: 123 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 182

Query: 283 IEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGV-----LPCLYQLL 337
              G+  +LV L+    +      L  + ++VT      +   +  +     L    QLL
Sbjct: 183 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 242

Query: 338 TQNHKKSIKKEACWTISNI 356
            Q+ +   + E C  +   
Sbjct: 243 QQHEEYQEELEFCEKLLQT 261

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (227), Expect = 6e-21
 Identities = 30/214 (14%), Positives = 73/214 (34%)

Query: 157 IEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSK 216
           +   A+P   +LL+     V  +A   +  ++    S   ++ S   +  ++  +   + 
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 217 LSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN 276
           +   R    TL N    +           +P L +++    + VL  A   L  L     
Sbjct: 74  VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133

Query: 277 DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQL 336
               AV  AG   ++V LL   +   L      +  +  G+      ++ +G    L  +
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193

Query: 337 LTQNHKKSIKKEACWTISNITAGNRAQIQVHDSF 370
           +     + +       +  ++  +  +  + ++ 
Sbjct: 194 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 227

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (199), Expect = 2e-17
 Identities = 52/307 (16%), Positives = 102/307 (33%), Gaps = 8/307 (2%)

Query: 66  QNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVE 124
           Q+  E    +IP + + +  ED  +  +A     +L   E       ++++  +V   V 
Sbjct: 9   QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVR 66

Query: 125 FLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWAL 184
            +   +  +     A  L N++    E    + + G +P  V++L S  D V   A+  L
Sbjct: 67  TMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125

Query: 185 GNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP 244
            N+       +  V  +G L  ++A LN+ +   +              +          
Sbjct: 126 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 185

Query: 245 ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLI 304
               L  ++     E L      +  +    +    A++EAG    L   L  PS  ++ 
Sbjct: 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 245

Query: 305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQI 364
             L T+ N+                L      L  +   ++   A   +SN+T  N    
Sbjct: 246 NCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 365 QVHDSFH 371
            +     
Sbjct: 302 MMVCQVG 308

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (160), Expect = 1e-12
 Identities = 33/199 (16%), Positives = 58/199 (29%), Gaps = 23/199 (11%)

Query: 115 KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSD 174
               +P  V+ L       L       + N+A   + H   + E GA+P  VQLL     
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQ 411

Query: 175 DVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234
           D + +                               +       ++   T  L    R  
Sbjct: 412 DTQRRTSMGGTQ---------------------QQFVEGVRMEEIVEGCTGALHILARDV 450

Query: 235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVEL 294
                 +    +P+  +L++   E +   A   L  L+       +A+   G    L EL
Sbjct: 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA-EAIEAEGATAPLTEL 509

Query: 295 LMHPSATVLIPALRTVGNI 313
           L   +  V   A   +  +
Sbjct: 510 LHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (151), Expect = 2e-11
 Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 3/129 (2%)

Query: 101 LLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG 160
           L+ +      D   +  +     +F+    M ++      AL  +A     +  V+    
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLN 460

Query: 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSML 220
            +P+FVQLL S  ++++  A   L  +A D     + + + GA    L +L       + 
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGAT-APLTELLHSRNEGVA 518

Query: 221 RNATWTLSN 229
             A   L  
Sbjct: 519 TYAAAVLFR 527

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 2e-10
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 113 VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG 172
           +     +P FV+ L    +  +Q  AA  L  +A    E    +   GA     +LL S 
Sbjct: 456 IRGLNTIPLFVQLL-YSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSR 513

Query: 173 SDDVREQAVWALGNVA 188
           ++ V   A   L  ++
Sbjct: 514 NEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 5e-07
 Identities = 13/105 (12%), Positives = 36/105 (34%)

Query: 276 NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQ 335
           N +  A +     P L +LL      V+  A   V  +   + ++   +    ++  + +
Sbjct: 7   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 66

Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLFVLHEDFS 380
            +   +     +    T+ N++      + +  S  +  L +   
Sbjct: 67  TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG 111

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 36/239 (15%), Positives = 71/239 (29%), Gaps = 9/239 (3%)

Query: 132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS 191
              +F A   L       S       E   V M ++LL   + +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV 76

Query: 192 PSCRDLVLSSGALMPLLAQLNE---HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPI 248
              +   +    L   +    E         L+     L     G         K    +
Sbjct: 77  KEYQVETIVD-TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL 135

Query: 249 LQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALR 308
              +    D  V  +A   ++ +       +     + +   L+  L  P   V    + 
Sbjct: 136 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTII 194

Query: 309 TVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVH 367
            +G++V          +   ++  L   L++N   S  +     I+ I+     +I  +
Sbjct: 195 ALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY 249

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 38/284 (13%), Positives = 96/284 (33%), Gaps = 25/284 (8%)

Query: 74   ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
            + +  +   V+S+  AL  + +           +    +   A V     +         
Sbjct: 771  DLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDS 830

Query: 134  LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS 193
            ++  A  +L  V      H  +  +     + ++  SS S++V+  A +ALG+++  +  
Sbjct: 831  IRLLALLSLGEVGH----HIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNL- 885

Query: 194  CRDLVLSSGALMPLLAQLNEHSKLSM-LRNATWTLSNFCRGKPPTPFEQVKPALPILQRL 252
                      L  +L ++    K    L ++   + +        P+  V+    +L + 
Sbjct: 886  -------PEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPY--VENIWALLLKH 936

Query: 253  IHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312
                +E         L         K+  +    + PRL   L+  S+      +  V  
Sbjct: 937  CECAEEGTRNVVAECLG--------KLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKF 988

Query: 313  IVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI 356
             ++        ++ N  +    + L ++   ++++ A  T ++ 
Sbjct: 989  TISDHPQPIDPLLKN-CIGDFLKTL-EDPDLNVRRVALVTFNSA 1030

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 53/337 (15%), Positives = 101/337 (29%), Gaps = 37/337 (10%)

Query: 56  QPQQQGLD--------------ASQNAIEKKLESI----------PSMVQGVWSEDPALQ 91
           +P +QGL                 Q  +++KLE +            ++  + SED   +
Sbjct: 4   KPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTR 63

Query: 92  LEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151
             +    +  +           +   +    +  +G    P ++      +T +AS    
Sbjct: 64  SLSGLILKNNVK-AHFQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGEL 121

Query: 152 HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD---LVLSSGALMPLL 208
                     +P    LL S   +  E A  AL  +  DS    D   L      ++P  
Sbjct: 122 QNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKF 177

Query: 209 AQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWAL 268
            Q  +HS   +  +A   ++ F   +       +      L  L    + EV  + C AL
Sbjct: 178 LQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRAL 237

Query: 269 SYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNG 328
             L +   D++   +   +   +++        V   AL      +T  +      +   
Sbjct: 238 VMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAEQPICKDVLVR 293

Query: 329 VLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
            LP L  +L    K S                    +
Sbjct: 294 HLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSE 330

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 3/142 (2%)

Query: 174 DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233
            D    A+  L  +A       + +++   ++ L+ Q  +     + +++   L +  + 
Sbjct: 636 KDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA 695

Query: 234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVE 293
                   +   +PIL   ++     V  +A WA+  +S     ++Q  I   V  +LVE
Sbjct: 696 CFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPM-VLHQLVE 754

Query: 294 LLMHPSA--TVLIPALRTVGNI 313
           ++  P+   T+L     T+G +
Sbjct: 755 IINRPNTPKTLLENTAITIGRL 776

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 32/242 (13%), Positives = 68/242 (28%), Gaps = 5/242 (2%)

Query: 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVR 177
            +   ++ L  H    ++      L  +A G  +     +    +P  +Q LS     VR
Sbjct: 395 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPEL-IPHLIQCLSDKKALVR 453

Query: 178 EQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT 237
               W L   A    S          +  LL ++ + +K  +   A    +         
Sbjct: 454 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFATLEEEACTE 512

Query: 238 PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKI-QAVIEAGVCPRLVELL- 295
               +   L  L         + L     A+  L+D     + +      + P L++   
Sbjct: 513 LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWN 572

Query: 296 -MHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTIS 354
            +      L P L  + ++ T   +      +     C+  +     +  +         
Sbjct: 573 MLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYE 632

Query: 355 NI 356
             
Sbjct: 633 AP 634

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 30/192 (15%), Positives = 67/192 (34%), Gaps = 21/192 (10%)

Query: 83  VWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 142
             + D    + A      L           V ++ ++    + + +  MP+++  +   L
Sbjct: 631 YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCM-QDKMPEVRQSSFALL 689

Query: 143 TNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA-----GDSPSCRDL 197
            ++     +H +  I    +P+    L+     V   A WA+G ++        P    +
Sbjct: 690 GDLTKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMV 748

Query: 198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQR-----L 252
           +     L+ ++     ++  ++L N   T+       P    ++V P L    R     L
Sbjct: 749 L---HQLVEIIN--RPNTPKTLLENTAITIGRLGYVCP----QEVAPMLQQFIRPWCTSL 799

Query: 253 IHLNDEEVLTDA 264
            ++ D E    A
Sbjct: 800 RNIRDNEEKDSA 811

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 33/251 (13%), Positives = 81/251 (32%), Gaps = 25/251 (9%)

Query: 129 HDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA 188
            D   ++ +  +A++ +A+   +     +E    P  ++ L+     V   AV  + +++
Sbjct: 609 KDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKALNQVDSPVSITAVGFIADIS 667

Query: 189 GDSPSCRDLVLSSGALMPLLAQL--NEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPAL 246
                  D    S A+M +LAQ+  N +++  +         +            +   +
Sbjct: 668 NSLEE--DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIM 725

Query: 247 PILQRLIHLNDEEVLTD-----------ACWALSYLSDGPNDKIQAV------IEAGVCP 289
            +     +   E    +              A   +  G +DK +A+      I   +  
Sbjct: 726 ALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQ 785

Query: 290 RLVELLMHPSATVLIPALRTVGNIVT--GDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKK 347
              +  ++        A+  +G+I     D +  QF   + V+  + +  +        K
Sbjct: 786 VAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATK 845

Query: 348 EAC-WTISNIT 357
           +   W      
Sbjct: 846 DTARWAREQQK 856

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 33/250 (13%), Positives = 78/250 (31%), Gaps = 29/250 (11%)

Query: 85  SEDPALQLEATTQFRKLLSIERS-----------PPIDEVIKAGVVPRFVEFLGRHDMPQ 133
           +     ++ A    +  L  + S             +    K  +    +  L   + P+
Sbjct: 52  NTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIE-PR 110

Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL-----SSGSDDVREQAVWALGNVA 188
           +   AA  +  +A        + + HGA P  ++++     +   ++V+  ++ ALG + 
Sbjct: 111 IANAAAQLIAAIA-------DIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMC 163

Query: 189 GDSPSCRDLVLSS--GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPAL 246
             +      ++SS    L+ ++           +R A                E+     
Sbjct: 164 ESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERN 223

Query: 247 PILQ---RLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVL 303
            ++Q         D EV   A   L  +       ++  +E  +    +  +  P+  V 
Sbjct: 224 YLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVA 283

Query: 304 IPALRTVGNI 313
              +     I
Sbjct: 284 SMTVEFWSTI 293

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQA 180
            F++   ++   + +  A  A   +  G        +   A+P  ++L+   S  VR+ A
Sbjct: 368 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTA 427

Query: 181 VWALGNVAGDSPSCRDLVLSSGALMPLLAQL 211
            W +G +    P   +  ++   L PLL  L
Sbjct: 428 AWTVGRICELLP---EAAINDVYLAPLLQCL 455

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 19/147 (12%), Positives = 49/147 (33%), Gaps = 9/147 (6%)

Query: 126 LGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALG 185
                +  ++  A   L  +     +          +P  + +    +   R   ++ + 
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRMTTLFCIN 505

Query: 186 NVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPA 245
            ++     C   + +   ++P + ++      ++  N   +L         +  +     
Sbjct: 506 VLS---EVCGQDITTK-HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE--V 559

Query: 246 LPILQRLIHLNDEEVLTDACWALSYLS 272
            PIL++L    D +V   A  AL+ LS
Sbjct: 560 KPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (89), Expect = 5e-04
 Identities = 15/140 (10%), Positives = 31/140 (22%), Gaps = 21/140 (15%)

Query: 128 RHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV 187
                  +  +A  L                  AV + ++  S  +   R+   + LG +
Sbjct: 29  DDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQI 77

Query: 188 AGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALP 247
                   +          L           +   A  + +  C+  P          + 
Sbjct: 78  KICKKCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVE 127

Query: 248 ILQRLIHLNDEEVLTDACWA 267
             Q         V     +A
Sbjct: 128 QSQITAFDKSTNVRRATAFA 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.98
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.88
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.84
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.28
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.27
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.26
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.24
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.24
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.15
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.15
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.08
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.08
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.08
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.05
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.86
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.78
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.72
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.55
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.54
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.5
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.48
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.47
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.47
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.31
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.57
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.25
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.62
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	96.24
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.23
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	95.49
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.31
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	95.29
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	94.77
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	92.36
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	88.94

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-51  Score=397.40  Aligned_cols=364  Identities=54%  Similarity=0.807  Sum_probs=314.3

Q ss_pred             CchhHHhccCCC-CC-CcHHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCcccccc------hhhhhHHhhhcCHHH
Q 016714            7 TRAEVRKKGYKT-GV-DADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLD------ASQNAIEKKLESIPS   78 (384)
Q Consensus         7 ~~~~~~~~~~k~-~~-~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~   78 (384)
                      +.+++|++.||+ |+ +++|+||||+++++||||+||+++|+|||+.....+.......      ..........+.++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (503)
T d1wa5b_           1 FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQ   80 (503)
T ss_dssp             CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHH
T ss_pred             CCchHHhHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHH
Confidence            357899999999 75 9999999999999999999999999999976433222111100      011112233467999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHh
Q 016714           79 MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIE  158 (384)
Q Consensus        79 lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~  158 (384)
                      ++..+++++.+.+..|+..++++++.+..++++.+++.|++|.|+.+|..+.++.++..|+|+|+|++.+++..+..+.+
T Consensus        81 ~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~  160 (503)
T d1wa5b_          81 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD  160 (503)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999999999988878899999999999999999987655889999999999999999999999999


Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-CCC
Q 016714          159 HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPT  237 (384)
Q Consensus       159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~  237 (384)
                      .|+++.++.+|.+++.++++.|+|+|+||+.+++.+++.+.+.|++++|+.++ .+.+..+.+.++|+|+++|.+. +..
T Consensus       161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~  239 (503)
T d1wa5b_         161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQP  239 (503)
T ss_dssp             TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccch
Confidence            99999999999999999999999999999999999999999999999999999 6667789999999999999876 555


Q ss_pred             ChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 016714          238 PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD  317 (384)
Q Consensus       238 ~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~  317 (384)
                      ......+++|.++.++.++|++++..++|+|++++....+....+.+.|+++.++.++.++++.++.+++++++|++.+.
T Consensus       240 ~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~  319 (503)
T d1wa5b_         240 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN  319 (503)
T ss_dssp             CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHH
Confidence            66677899999999999999999999999999999999888889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          318 DAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       318 ~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      +..+..+++.|+++.|..++.++ ++.++++++|+++|+++++++++..+++.|+
T Consensus       320 ~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~  373 (503)
T d1wa5b_         320 DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANL  373 (503)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred             HHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccc
Confidence            99999999999999999999998 8999999999999999999999999999988

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-35  Score=276.01  Aligned_cols=298  Identities=54%  Similarity=0.886  Sum_probs=274.8

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      .+++.+++.+++++++.|..|+..++++++...+++++.+++.|++|.|+++|++.++++++..|+|+|++++.++++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            67999999999999999999999999999877677789999999999999999776558999999999999999889999


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc----hhHHHHHHHHHHhh
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS----KLSMLRNATWTLSN  229 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~----~~~~~~~a~~~L~~  229 (384)
                      ..+++.|++|.|+.+|.+++.++++.|+|+|+|++.+++..+..+.+.|+++.++.++....    .....+.++|++.+
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999989999999999999999995433    23567889999999


Q ss_pred             hhcCC-CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHH
Q 016714          230 FCRGK-PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALR  308 (384)
Q Consensus       230 L~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~  308 (384)
                      ++... +........+++|.+..++.+++++++..++|++++++..+.+....+...|+++.|++++.++++.++..+++
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence            99986 34455566889999999999999999999999999999998888888889999999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          309 TVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       309 ~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      ++++++.+++.....+++.|+++.+..++.++ ++++++.|+|+|+|++.++++....+.+.|+
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~  315 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGL  315 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhh
Confidence            99999999999999999999999999999998 8999999999999999999999999999988

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-32  Score=262.07  Aligned_cols=304  Identities=28%  Similarity=0.347  Sum_probs=269.9

Q ss_pred             cCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           74 ESIPSMVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        74 ~~l~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      +.+|.++..+++ .++.++..|+++|.++++++ +.....+.+.|++|.++.+|.+++ ++++..|+|+|+||+..+++.
T Consensus       119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHHH
Confidence            679999999985 46789999999999998764 556677889999999999999888 899999999999999988999


Q ss_pred             HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                      +..+.+.|+++.|+.++.+.+..++..++|+|.|++.............++++.|+.++ .+.+.+++..++|+|.+++.
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999977655555556678899999998 77788999999999999998


Q ss_pred             CCCCCCh-hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714          233 GKPPTPF-EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG  311 (384)
Q Consensus       233 ~~~~~~~-~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~  311 (384)
                      ..+.... ....++++.++.++.++++.+...+++++++++.+.+.....+.+.|+++.|..++.++++.++..++|+++
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~  355 (503)
T d1wa5b_         276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  355 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            7533222 223789999999999999999999999999999999888888999999999999999999999999999999


Q ss_pred             HhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc---CCHHHHHHHHhCCc------cccCCCccc
Q 016714          312 NIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA---GNRAQIQVHDSFHL------FVLHEDFSL  381 (384)
Q Consensus       312 nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~i~~l~~~~~------ll~~~~~~~  381 (384)
                      |++.+++.....+++.|+++.++.++.++ +..++++|+|+|+|++.   ..++++..+++.|+      ++...|.++
T Consensus       356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~  433 (503)
T d1wa5b_         356 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI  433 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHH
T ss_pred             HHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHH
Confidence            99999999999999999999999999999 89999999999999996   34678899999998      456665543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=2.9e-30  Score=242.07  Aligned_cols=305  Identities=25%  Similarity=0.399  Sum_probs=266.5

Q ss_pred             hcCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714           73 LESIPSMVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        73 ~~~l~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      .+.+|.|++.|++ +++++|..|+++|.++++.. +.....+++.|++|.|+.+|.+++ +.++..|+|+|+|++.++++
T Consensus        55 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~  132 (434)
T d1q1sc_          55 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA  132 (434)
T ss_dssp             TTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchH
Confidence            3789999999975 45789999999999998764 566778899999999999999988 99999999999999998889


Q ss_pred             hHHHHHhcCChHHHHHhhcCCC-----HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHH
Q 016714          152 HTRVVIEHGAVPMFVQLLSSGS-----DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWT  226 (384)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~  226 (384)
                      .+..+.+.|+++.|+.++...+     ......++|++.+++.............++++.+..++ .+.+++++..++|+
T Consensus       133 ~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~  211 (434)
T d1q1sc_         133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  211 (434)
T ss_dssp             HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhh
Confidence            9999999999999999997643     45667889999999987665555555667888888888 67788999999999


Q ss_pred             HhhhhcCCCCCCh-hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHH
Q 016714          227 LSNFCRGKPPTPF-EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIP  305 (384)
Q Consensus       227 L~~L~~~~~~~~~-~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~  305 (384)
                      |.+++...+.... ....+++|.++.++.+++++++..++++|.+++.+++.....+.+.|+++.++.+|.++++.++..
T Consensus       212 l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~  291 (434)
T d1q1sc_         212 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  291 (434)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred             hcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHH
Confidence            9999987532222 223789999999999999999999999999999988888888999999999999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCc------cccCCC
Q 016714          306 ALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDSFHL------FVLHED  378 (384)
Q Consensus       306 a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~~~~------ll~~~~  378 (384)
                      |+++++|++.+.+.....+.+.|+++.++.++.++ ++.++..|+|+++|++. ++++++..+.+.|+      +++.+|
T Consensus       292 a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d  370 (434)
T d1q1sc_         292 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  370 (434)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSC
T ss_pred             HHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCC
Confidence            99999999998888888999999999999999998 89999999999999997 78899999999998      456655


Q ss_pred             ccc
Q 016714          379 FSL  381 (384)
Q Consensus       379 ~~~  381 (384)
                      .++
T Consensus       371 ~~~  373 (434)
T d1q1sc_         371 TKI  373 (434)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-26  Score=223.43  Aligned_cols=290  Identities=21%  Similarity=0.206  Sum_probs=249.1

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIK-AGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~-~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      +.+|.|++.|++++..++..|+..+.++...  +.....++. .|+++.++.+|.++++++++..|+++|.+++. +++.
T Consensus        17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~--~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~   93 (529)
T d1jdha_          17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKK--EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREG   93 (529)
T ss_dssp             CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchh
Confidence            6799999999999999999999999998653  344455554 47899999999775558999999999999987 5888


Q ss_pred             HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                      +..+++.|++|.|+.+|++++++++..|+++|+|++.+.+..+..+.+.|++++|+.++ ++.+++++..++++|.+++.
T Consensus        94 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~  172 (529)
T d1jdha_          94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHH-HccChHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999999999999999888889999999999999999 77788999999999999998


Q ss_pred             CCCCCC-hhhhhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714          233 GKPPTP-FEQVKPALPILQRLIHLN-DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV  310 (384)
Q Consensus       233 ~~~~~~-~~~~~~~~~~L~~lL~~~-~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l  310 (384)
                      ..+... .....++++.++.++.+. +..++..+++++.+++...+ ....+.+.|+++.|+.++.+++..++..+++++
T Consensus       173 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l  251 (529)
T d1jdha_         173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL  251 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT-HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcccc-ccchhhhhhhhhhHHHHhcccchhhhhhhhhHH
Confidence            753322 233378899999999654 57789999999999987654 456789999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          311 GNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       311 ~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      .+++......   ....|+++.|+.++.++ +..++..|+++|+|++.++++....+.+.|.
T Consensus       252 ~~ls~~~~~~---~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~  309 (529)
T d1jdha_         252 RNLSDAATKQ---EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGG  309 (529)
T ss_dssp             HHHHTTCTTC---SCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTTCHHHHHHHHHTTH
T ss_pred             Hhccccccch---hhhhhcchhhhhhcccc-cHHHHHHHHHHHHhhccchhHHHHHHHHhhh
Confidence            9997654321   12247889999999998 8999999999999999999998888888776

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.1e-26  Score=218.19  Aligned_cols=280  Identities=17%  Similarity=0.204  Sum_probs=245.4

Q ss_pred             cCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714           74 ESIPSMVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH  152 (384)
Q Consensus        74 ~~l~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  152 (384)
                      +.++.++..|.+ ++++.+..|+.+|.++.. + .+....+++.|++|.|+.+|++++ ++++..|+++|+|++.+++..
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~-~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-H-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-S-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-C-chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchh
Confidence            457899999974 678899999999998854 3 677788999999999999999988 999999999999999988889


Q ss_pred             HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714          153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR  232 (384)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~  232 (384)
                      +..+.+.|++|.|+.+|.+++++++..++++|++++..++..+..+...|++++|+.++..+.+..++..+++++.+++.
T Consensus       136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             hhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999999999999999988888889999999999999999777778899999999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714          233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN  312 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (384)
                      ...........++++.|..++.+++.+++..+++++.+++......   ....|+++.|++++.+++..++..|+++|+|
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            6433333334789999999999999999999999999998765432   1234789999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCchHHHHHHhcc-CCchhHHHHHHHHHHHHhcC
Q 016714          313 IVTGDDAQTQFVIDNGVLPCLYQLLTQ-NHKKSIKKEACWTISNITAG  359 (384)
Q Consensus       313 l~~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~  359 (384)
                      ++.+++.....+.+.|+++.++.++.. ++.+.+++.|+|+|.|++.+
T Consensus       293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~  340 (529)
T d1jdha_         293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccch
Confidence            999898888889999999999988853 32678999999999999974

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-23  Score=194.89  Aligned_cols=280  Identities=20%  Similarity=0.223  Sum_probs=221.9

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .||.+++.|+++++++|..|+++|.+++..+ ++....+.+.|++|.|+++|++++ ++++..|+++|++++.++++.+.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence            6899999999999999999999999997654 778889999999999999999988 99999999999999998899999


Q ss_pred             HHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhh-------------------------------------
Q 016714          155 VVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRD-------------------------------------  196 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~-------------------------------------  196 (384)
                      .+.+.|+++.|+.++.+ .++.++..++++|++++.+......                                     
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence            99999999999998865 6788999999999999865421100                                     


Q ss_pred             -------------------HHHhcCChHHHHHHhc---------------------------------------------
Q 016714          197 -------------------LVLSSGALMPLLAQLN---------------------------------------------  212 (384)
Q Consensus       197 -------------------~i~~~g~i~~L~~~l~---------------------------------------------  212 (384)
                                         .....|+++.++.++.                                             
T Consensus       161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  240 (457)
T d1xm9a1         161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence                               0012344555554431                                             


Q ss_pred             -----------------------------------------------------ccchhHHHHHHHHHHhhhhcCCCCCCh
Q 016714          213 -----------------------------------------------------EHSKLSMLRNATWTLSNFCRGKPPTPF  239 (384)
Q Consensus       213 -----------------------------------------------------~~~~~~~~~~a~~~L~~L~~~~~~~~~  239 (384)
                                                                           ...++.....+.+++.+++........
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  320 (457)
T d1xm9a1         241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             hhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchH
Confidence                                                                 011123344566666666655322111


Q ss_pred             ----h--hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC------ChhhHHHHH
Q 016714          240 ----E--QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP------SATVLIPAL  307 (384)
Q Consensus       240 ----~--~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~------~~~v~~~a~  307 (384)
                          .  ...+++|.|+.++.++++.++..+++++++++..... ...+ ..++++.++.+|...      +..++..++
T Consensus       321 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~-~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~a~  398 (457)
T d1xm9a1         321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL-HRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSSAC  398 (457)
T ss_dssp             HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG-HHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhH-HHHH-HHhhHHHHHHHHhccccCcCCcHHHHHHHH
Confidence                1  1257899999999999999999999999999977554 3333 456789999998542      346889999


Q ss_pred             HHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          308 RTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       308 ~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .+|+|++..+++....+++.|+++.|+.++.+.+++.+++.|+++|+|+++
T Consensus       399 ~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~  449 (457)
T d1xm9a1         399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence            999999998998889999999999999999876578899999999999976

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.9e-22  Score=183.14  Aligned_cols=253  Identities=18%  Similarity=0.196  Sum_probs=198.1

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714          117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD  196 (384)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (384)
                      +.||.|+++|++++ ++++..|+++|+|+|.++++.+..+.+.|++|.|+.+|++++++++..|+++|+||+.+++.++.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46999999999999 99999999999999999999999999999999999999999999999999999999998888999


Q ss_pred             HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhh-----------------------------------
Q 016714          197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQ-----------------------------------  241 (384)
Q Consensus       197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-----------------------------------  241 (384)
                      .+.+.|+++.++.++....+.+++..++++|.+++..........                                   
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence            999999999999999777788899999999999998642211100                                   


Q ss_pred             --------------------h--hchHHHHHHhhcc--------------------------------------------
Q 016714          242 --------------------V--KPALPILQRLIHL--------------------------------------------  255 (384)
Q Consensus       242 --------------------~--~~~~~~L~~lL~~--------------------------------------------  255 (384)
                                          .  .++++.++.++.+                                            
T Consensus       161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  240 (457)
T d1xm9a1         161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence                                0  1233444333210                                            


Q ss_pred             -------------------------------------------------------CCHhHHHHHHHHHHHhccCChH---
Q 016714          256 -------------------------------------------------------NDEEVLTDACWALSYLSDGPND---  277 (384)
Q Consensus       256 -------------------------------------------------------~~~~i~~~a~~~l~~l~~~~~~---  277 (384)
                                                                             .++.+...+.+++..++.....   
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  320 (457)
T d1xm9a1         241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             hhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchH
Confidence                                                                   1122333444555555443221   


Q ss_pred             --HHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCC-----chhHHHHHH
Q 016714          278 --KIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-----KKSIKKEAC  350 (384)
Q Consensus       278 --~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~-----~~~v~~~a~  350 (384)
                        ....+.+.|+++.|+.+|.++++.++..++++++|++... ..... +..++++.++.++....     +++++..|+
T Consensus       321 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~-~~~~~-i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~  398 (457)
T d1xm9a1         321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-LLHRV-MGNQVFPEVTRLLTSHTGNTSNSEDILSSAC  398 (457)
T ss_dssp             HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG-GGHHH-HHHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh-hHHHH-HHHhhHHHHHHHHhccccCcCCcHHHHHHHH
Confidence              1223345689999999999999999999999999998744 33343 34567889999986531     457999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhCCc
Q 016714          351 WTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       351 ~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      ++|.|++.++++..+.+++.|.
T Consensus       399 ~~L~~l~~~~~~~~~~l~~~g~  420 (457)
T d1xm9a1         399 YTVRNLMASQPQLAKQYFSSSM  420 (457)
T ss_dssp             HHHHHHHTTCTHHHHHHCCHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHCCC
Confidence            9999999999998999998875

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.9e-22  Score=172.87  Aligned_cols=195  Identities=16%  Similarity=0.202  Sum_probs=175.1

Q ss_pred             hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHH
Q 016714          132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQ-LLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQ  210 (384)
Q Consensus       132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~  210 (384)
                      .+.+..|+.+|.+++. +.+....+...|+++.++. ++.+++++++..|+++|++++.+++.++..+.+.|+++.|+.+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            6788999999999997 4778888999999999886 7888999999999999999999999899999999999999999


Q ss_pred             hcccchhHHHHHHHHHHhhhhcCCCCCChh-hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChH
Q 016714          211 LNEHSKLSMLRNATWTLSNFCRGKPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCP  289 (384)
Q Consensus       211 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~  289 (384)
                      +....++.++..++|+|++++++.+..... ...++++.|++++.+++..++..++++|++++..+++....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            976778889999999999999987443333 3488999999999999999999999999999998888888999999999


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 016714          290 RLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN  327 (384)
Q Consensus       290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~  327 (384)
                      .|+.+|.++++.++..|+++|++++..++.....+...
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            99999999999999999999999999888777666543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.3e-20  Score=164.29  Aligned_cols=201  Identities=12%  Similarity=0.122  Sum_probs=177.4

Q ss_pred             cCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh-hchHHH
Q 016714          170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV-KPALPI  248 (384)
Q Consensus       170 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~~~  248 (384)
                      .+.+.+.+..|+.+|.+++.+.. ++..+...|++++++..+..+++++++..++++|++++.+.+....... .+++|.
T Consensus        27 ~~~~~~~~~~Al~~L~~L~~~~d-~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~  105 (264)
T d1xqra1          27 QAADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            34567889999999999996544 6677889999999998665888999999999999999997654443333 789999


Q ss_pred             HHHhhcc-CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 016714          249 LQRLIHL-NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN  327 (384)
Q Consensus       249 L~~lL~~-~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~  327 (384)
                      |+.++.+ .++.++..+++++++++.+.+.....+...|+++.|+.+|.+++..++..++++|+|++.+++.....+.+.
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  185 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            9999964 578899999999999999999888889999999999999999999999999999999999888888999999


Q ss_pred             CchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714          328 GVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL  372 (384)
Q Consensus       328 g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~  372 (384)
                      |+++.|+.++.++ ++.+++.|+|+|.+++.++++.+......++
T Consensus       186 ~~v~~L~~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l  229 (264)
T d1xqra1         186 GMVQQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECREPEL  229 (264)
T ss_dssp             THHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGG
T ss_pred             hhHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence            9999999999998 8999999999999999999998887776554

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=5.8e-10  Score=95.84  Aligned_cols=231  Identities=14%  Similarity=0.112  Sum_probs=150.9

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      ..+.|++.|.++++.++..|+..|..+-.            ...+|.|+.++++++ +.++..|+++|+.+...... ..
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~-~~   85 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKC-ED   85 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTT-HH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccccc-cc
Confidence            56889999999999999999999987621            135899999999988 99999999999988653221 11


Q ss_pred             HHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714          155 VVIEHGAVPMFV-QLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG  233 (384)
Q Consensus       155 ~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~  233 (384)
                      .     .++.+. .++.++++.++..++.+|++++...+....     ..++.+...+ .+.+..++..+++++......
T Consensus        86 ~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~~  154 (276)
T d1oyza_          86 N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVINDK  154 (276)
T ss_dssp             H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred             c-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHh-cCcchHHHHHHHHHHhhcchH
Confidence            1     123333 356788999999999999999865442211     2345556665 566777777777777654432


Q ss_pred             CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHH----------------------HHcCChHHH
Q 016714          234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAV----------------------IEAGVCPRL  291 (384)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~----------------------~~~g~~~~L  291 (384)
                                ..++.+..++...+..+...+.+++..+..........+                      ....+++.|
T Consensus       155 ----------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L  224 (276)
T d1oyza_         155 ----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVL  224 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             ----------HHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHH
Confidence                      234445555555555555555555544433322211110                      112356777


Q ss_pred             HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHH
Q 016714          292 VELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI  353 (384)
Q Consensus       292 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L  353 (384)
                      +..+.+  +.++..++++||.+..           .+.++.|..++...++..++..|+-+|
T Consensus       225 ~~~l~d--~~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~~~L  273 (276)
T d1oyza_         225 CDELKK--NTVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKL  273 (276)
T ss_dssp             HHHHTS--SSCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred             HHHhCC--hHHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            777764  3577788888887742           246788888887765778888887665

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.9e-11  Score=112.99  Aligned_cols=267  Identities=11%  Similarity=0.085  Sum_probs=195.8

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      .++.+...+++++++++..|+..+..++..-.........-..++|.+...+.+.+ +.++..++.++..++..  -...
T Consensus       282 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~-~~vr~~~~~~l~~~~~~--~~~~  358 (588)
T d1b3ua_         282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPI--LGKD  358 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHH--HCHH
T ss_pred             hhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHhhhhhc--cchh
Confidence            46777778888888999999988888765432333444445678899999998888 89999999988877642  1111


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~  234 (384)
                      ... ...+|.+..++.+++++++..++.+++.+...-..  ..+ ....++.+...+ .+.+..++..++.++..++...
T Consensus       359 ~~~-~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~~~-~~~ll~~l~~~~-~d~~~~~r~~~~~~l~~l~~~~  433 (588)
T d1b3ua_         359 NTI-EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQL-SQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQL  433 (588)
T ss_dssp             HHH-HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HHH-HHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--hhh-hhHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHc
Confidence            222 34689999999999999999999988887643211  111 123566677766 6677888999999888887642


Q ss_pred             CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714          235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (384)
                      ..  ......+.|.+..++..+...++..|+++++.++......   .....+++.+..++.+++...|..++.+++.+.
T Consensus       434 ~~--~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~---~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~  508 (588)
T d1b3ua_         434 GV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS  508 (588)
T ss_dssp             CG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred             Ch--HhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            11  1122456778888899999999999999999997542111   123357899999999999999999999999987


Q ss_pred             cCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          315 TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       315 ~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ...+.   ..+...++|.+.+++.++ .+.||..+++++..+..
T Consensus       509 ~~~~~---~~~~~~ilp~ll~~~~D~-v~nVR~~a~~~l~~i~~  548 (588)
T d1b3ua_         509 EVCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGG
T ss_pred             HHcCh---HHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHH
Confidence            53221   223446899999999998 89999999999999986

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.8e-10  Score=109.06  Aligned_cols=265  Identities=16%  Similarity=0.116  Sum_probs=192.7

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714           75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      -++.+...+.++++.++..|+.++.++...-   .. ..+..-++|.+..+.+++. ...+..|+..+..++....... 
T Consensus        88 ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~---~~-~~~~~~l~p~i~~L~~~~~-~~~r~~a~~ll~~~~~~~~~~~-  161 (588)
T d1b3ua_          88 LLPPLESLATVEETVVRDKAVESLRAISHEH---SP-SDLEAHFVPLVKRLAGGDW-FTSRTSACGLFSVCYPRVSSAV-  161 (588)
T ss_dssp             GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTS---CH-HHHHHTHHHHHHHHHTCSS-HHHHHHHGGGHHHHTTTSCHHH-
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHhC---CH-HHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHhhHHH-
Confidence            3566667778888999999999999887532   22 2234455676666666655 7888888888888876433221 


Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK  234 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~  234 (384)
                         ....++.+..++.++++.+|..++.+++.++..-+.   .......++.+..++ .+++..++..++.++..++...
T Consensus       162 ---~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~~i~~~~  234 (588)
T d1b3ua_         162 ---KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLA-SDEQDSVRLLAVEACVNIAQLL  234 (588)
T ss_dssp             ---HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHH-TCSCHHHHTTHHHHHHHHHHHS
T ss_pred             ---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHh-cCCchhhHHHHHHHHHHhhccC
Confidence               123578888899999999999999999999865331   122333455556655 7778888889999998887643


Q ss_pred             CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714          235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV  314 (384)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (384)
                      +.  ......++|.+..++.+.++.++..++.+++.++..-..   ......+++.+..++.++++.++..++..++.++
T Consensus       235 ~~--~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~  309 (588)
T d1b3ua_         235 PQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC  309 (588)
T ss_dssp             CH--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             CH--HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh---hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            21  233356788999999999999999999999998754222   1233567899999999999999999999999987


Q ss_pred             cCCh-HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          315 TGDD-AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       315 ~~~~-~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ..-. .......-..+++.+...+.+. ++.+|..++.++..++.
T Consensus       310 ~~l~~~~~~~~~~~~i~~~l~~~~~d~-~~~vr~~~~~~l~~~~~  353 (588)
T d1b3ua_         310 ENLSADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLSP  353 (588)
T ss_dssp             HTSCTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHH
T ss_pred             HHHhhhhhhhhhHHHHHHHHHHhhcCC-ChHHHHHHHHHHhhhhh
Confidence            5422 2222233346788888888888 88999998888887764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.7e-09  Score=92.86  Aligned_cols=216  Identities=17%  Similarity=0.172  Sum_probs=150.5

Q ss_pred             HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch
Q 016714          115 KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC  194 (384)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  194 (384)
                      +....+.|+++|++++ +.++..|+.+|+.+..           ..+++.|+.++.++++.++..|+++|+.+...... 
T Consensus        17 ~~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-   83 (276)
T d1oyza_          17 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-   83 (276)
T ss_dssp             HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-
T ss_pred             ccCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-
Confidence            3456778999999988 9999999999998753           13589999999999999999999999998654332 


Q ss_pred             hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 016714          195 RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG  274 (384)
Q Consensus       195 ~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~  274 (384)
                      .+     ..++.+...+..+.++.++..++++|.+++...+    ......++.+...+.+.++.++..++.+++.+.. 
T Consensus        84 ~~-----~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          84 ED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             cc-----chHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-
Confidence            11     1345666666678889999999999999987532    1224567788888888999999999888887543 


Q ss_pred             ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH----------------------HcCchHH
Q 016714          275 PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVI----------------------DNGVLPC  332 (384)
Q Consensus       275 ~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~----------------------~~g~l~~  332 (384)
                                ...++.+..++...+..++..+..+++++..........++                      ....++.
T Consensus       154 ----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  223 (276)
T d1oyza_         154 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSV  223 (276)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             ----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHH
Confidence                      23345555555555555555555555554433332211111                      1246777


Q ss_pred             HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 016714          333 LYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHD  368 (384)
Q Consensus       333 L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~  368 (384)
                      |...+.++   .+|..++|+|+.+.  +++.+..+.
T Consensus       224 L~~~l~d~---~vr~~a~~aL~~ig--~~~~~~~L~  254 (276)
T d1oyza_         224 LCDELKKN---TVYDDIIEAAGELG--DKTLLPVLD  254 (276)
T ss_dssp             HHHHHTSS---SCCHHHHHHHHHHC--CGGGHHHHH
T ss_pred             HHHHhCCh---HHHHHHHHHHHHcC--CHHHHHHHH
Confidence            88877644   58899999999885  444444443

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-10  Score=117.67  Aligned_cols=286  Identities=14%  Similarity=0.140  Sum_probs=173.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc-hhHHH
Q 016714           77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS-EHTRV  155 (384)
Q Consensus        77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~-~~~~~  155 (384)
                      +.+.+.+.++++..+..|+.++..++.+. .+.....+ ..++|.++..+++++ +.++..|+|+|+.++.... .....
T Consensus       398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~~  474 (888)
T d1qbkb_         398 PLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPDT  474 (888)
T ss_dssp             HHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred             HHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            44445667888999999999999876432 11111111 235788899998888 9999999999998875211 11222


Q ss_pred             HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC-chhh---HHH--------------------------h-----
Q 016714          156 VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP-SCRD---LVL--------------------------S-----  200 (384)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~---~i~--------------------------~-----  200 (384)
                      .. ..+++.++..+.++++.+++.|+++|.+++.... ....   .++                          +     
T Consensus       475 ~~-~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~  553 (888)
T d1qbkb_         475 YL-KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH  553 (888)
T ss_dssp             HT-TTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             hh-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhcc
Confidence            22 3578889999999999999999999999873211 0100   000                          0     


Q ss_pred             ---cC----ChHHHHHHhcc--cchh------------------------------------------------------
Q 016714          201 ---SG----ALMPLLAQLNE--HSKL------------------------------------------------------  217 (384)
Q Consensus       201 ---~g----~i~~L~~~l~~--~~~~------------------------------------------------------  217 (384)
                         ..    .++.++.....  ..+.                                                      
T Consensus       554 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  633 (888)
T d1qbkb_         554 LNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA  633 (888)
T ss_dssp             GCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCC
T ss_pred             ccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence               00    00111111100  0000                                                      


Q ss_pred             ---HHHHHHHHHHhhhhcCCCCCChhhh--hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHH
Q 016714          218 ---SMLRNATWTLSNFCRGKPPTPFEQV--KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLV  292 (384)
Q Consensus       218 ---~~~~~a~~~L~~L~~~~~~~~~~~~--~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~  292 (384)
                         ++...++.++..+...-.......+  ..+++.+...+.+.+++++..+..+++.++...........+ .+++.+.
T Consensus       634 ~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~  712 (888)
T d1qbkb_         634 PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILG  712 (888)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHH
Confidence               0001111111111111000001111  234556666777888999999999999888654443322222 3677888


Q ss_pred             HhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHH
Q 016714          293 ELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-KKSIKKEACWTISNITAGNRAQIQVHD  368 (384)
Q Consensus       293 ~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~i~~l~  368 (384)
                      ..|.++...++..|++++|.|+....+.....+. .+++.|+.++.+++ ...+++.+|-+|+.++...++.+...+
T Consensus       713 ~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l  788 (888)
T d1qbkb_         713 TNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPML  788 (888)
T ss_dssp             HTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred             HHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhH
Confidence            8888888899999999999998654433332222 47888999998763 355889999999999987777654333

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.4e-09  Score=98.36  Aligned_cols=275  Identities=17%  Similarity=0.180  Sum_probs=175.3

Q ss_pred             CHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCCch
Q 016714           75 SIPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD-MPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        75 ~l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      .++.++..+.++  ++..+..++..+..+.... .+....-.-..+++.++..+.+++ +..++..|+.++.++......
T Consensus       128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhc-cchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            467777777654  3566667778877765432 221111112335778888886543 378999999999998875433


Q ss_pred             hHH-HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch-hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714          152 HTR-VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC-RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN  229 (384)
Q Consensus       152 ~~~-~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~  229 (384)
                      ... ........+.+..++.+++++++..++.+|..++...+.. ...+ . ..+..++.....+.+.++...++..+..
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l-~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~  284 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSDIDEVALQGIEFWSN  284 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-T-TTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            221 1222235677788888899999999999999998654432 1111 1 1233333333356667777778877776


Q ss_pred             hhcCC----------------C-CCC----hhhhhchHHHHHHhhcc-------CCHhHHHHHHHHHHHhccCChHHHHH
Q 016714          230 FCRGK----------------P-PTP----FEQVKPALPILQRLIHL-------NDEEVLTDACWALSYLSDGPNDKIQA  281 (384)
Q Consensus       230 L~~~~----------------~-~~~----~~~~~~~~~~L~~lL~~-------~~~~i~~~a~~~l~~l~~~~~~~~~~  281 (384)
                      ++...                + ...    ......++|.+...+..       .+..++..+..++..++....+..  
T Consensus       285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~--  362 (458)
T d1ibrb_         285 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI--  362 (458)
T ss_dssp             HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH--
T ss_pred             HHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh--
Confidence            65310                0 000    01123444555555432       224577888888888775433221  


Q ss_pred             HHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC-hHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          282 VIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD-DAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       282 ~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                       . ..+++.+...+.++++.++..|+.+||.++.+. +...... -..+++.+...+.++ ++.||..|+|+|+.++.
T Consensus       363 -~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~-~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         363 -V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP-SVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             -H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             -h-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence             1 135678888899999999999999999998653 2222212 235889999999998 99999999999999975

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=5.2e-10  Score=112.63  Aligned_cols=234  Identities=17%  Similarity=0.163  Sum_probs=145.6

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-CchhhH
Q 016714          119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS-PSCRDL  197 (384)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~  197 (384)
                      ++.+.+.+.+++ +..++.|+.+|+.++.+..+.....+. .+++.|+..+.++++.++..++|+|+.++... +...+.
T Consensus       397 l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~  474 (888)
T d1qbkb_         397 LPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT  474 (888)
T ss_dssp             HHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred             HHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            455556666777 899999999999999875544333332 46788999999999999999999999987421 111111


Q ss_pred             HHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHH--------------
Q 016714          198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTD--------------  263 (384)
Q Consensus       198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~--------------  263 (384)
                      . -...++.++..+ .+.++.++..++++|.+++.............+++.+...+...+......              
T Consensus       475 ~-~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~  552 (888)
T d1qbkb_         475 Y-LKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH  552 (888)
T ss_dssp             H-TTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGG
T ss_pred             h-hhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhc
Confidence            1 234677788777 666788999999999999875332222222333333333222211111111              


Q ss_pred             -------------------------------HHHHHHHhc----------------------------------------
Q 016714          264 -------------------------------ACWALSYLS----------------------------------------  272 (384)
Q Consensus       264 -------------------------------a~~~l~~l~----------------------------------------  272 (384)
                                                     ++.+++.++                                        
T Consensus       553 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  632 (888)
T d1qbkb_         553 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYE  632 (888)
T ss_dssp             GGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             cccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence                                           111111110                                        


Q ss_pred             ------------------cCCh-HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHH
Q 016714          273 ------------------DGPN-DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCL  333 (384)
Q Consensus       273 ------------------~~~~-~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L  333 (384)
                                        ..-. .....+....+++.+...+.+.++.++..|+.++|.++..........++ .+++.+
T Consensus       633 ~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l  711 (888)
T d1qbkb_         633 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPIL  711 (888)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHH
Confidence                              0000 00000111234555666677788889999999999998665544333333 367778


Q ss_pred             HHHhccCCchhHHHHHHHHHHHHhc
Q 016714          334 YQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       334 ~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ...+.++ ...++..|+|+++.|+.
T Consensus       712 ~~~L~~~-~~~v~~~a~~~ig~ia~  735 (888)
T d1qbkb_         712 GTNLNPE-FISVCNNATWAIGEISI  735 (888)
T ss_dssp             HHTCCGG-GHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcC-CHHHHHHHHHHHHHHHH
Confidence            8888877 88999999999999985

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=6.6e-10  Score=115.26  Aligned_cols=271  Identities=14%  Similarity=0.138  Sum_probs=191.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      +..+++.+.+.|++.++.|+..|.+.+..+ ....+.-....+++.|+.+|++++ +++|..|+.||+.++..-++.   
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~-~~~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~---   79 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY---   79 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH---
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhc-ccccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHh---
Confidence            577888999999999999999999888654 222222222347899999999888 999999999999998754432   


Q ss_pred             HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC------chhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714          156 VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP------SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN  229 (384)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~------~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~  229 (384)
                      .+ ...++.|+..+.+++...+..+..+|..+...-+      .....+ ....++.+...+....+..++..++.+|..
T Consensus        80 ~~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          80 QV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             HH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             hH-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            12 2357888888888888888888888877653211      111111 112444555555555677788888888888


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc-CCCChhhHHHHHH
Q 016714          230 FCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL-MHPSATVLIPALR  308 (384)
Q Consensus       230 L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL-~~~~~~v~~~a~~  308 (384)
                      +....+..-......+++.+...+.+++..++..|+.+|+.++.......    -..+++.++..+ .+.+...+..++.
T Consensus       158 l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         158 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHccCCCHHHHHHHHH
Confidence            87765544444456788889999999999999999999999987654321    123456666655 3455667777888


Q ss_pred             HHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714          309 TVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG  359 (384)
Q Consensus       309 ~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  359 (384)
                      +++.++...+......+ ..+++.+...+... ++.+|+.+..++..++..
T Consensus       234 ~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~  282 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRR  282 (1207)
T ss_dssp             HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcchhhHHHH-HHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHh
Confidence            99988765443322111 36788899999888 889999999999998863

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=7.8e-09  Score=94.84  Aligned_cols=235  Identities=19%  Similarity=0.201  Sum_probs=155.7

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           76 IPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        76 l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      ++.++..+.++  +..++..|+.++..+..................+.+..++.+++ ++++..++++|..++...+...
T Consensus       173 l~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~i~~~~~~~~  251 (458)
T d1ibrb_         173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYM  251 (458)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCC-HHHHHHHHHHHHHHHHHhHHHH
Confidence            56666667654  46788889999988865321111112223345677788888877 9999999999999987655543


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCc---------------------hhhHHHhcCChHHHHHHhc
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS---------------------CRDLVLSSGALMPLLAQLN  212 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~---------------------~~~~i~~~g~i~~L~~~l~  212 (384)
                      ...+.....+.+...+.+++++++..++.++..++.....                     ...... ...++.+...+.
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~  330 (458)
T d1ibrb_         252 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLT  330 (458)
T ss_dssp             TTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHH-HHHhhhHHhhhh
Confidence            3333333345556667788899999999998888632100                     000001 112233333332


Q ss_pred             c------cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-HHHHHHHHc
Q 016714          213 E------HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN-DKIQAVIEA  285 (384)
Q Consensus       213 ~------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~-~~~~~~~~~  285 (384)
                      .      ..+..++..+..++..++...+.   .....+++.+...+.++++.++..++.+|+.++.+.. ..... .-.
T Consensus       331 ~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~  406 (458)
T d1ibrb_         331 KQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVI  406 (458)
T ss_dssp             CCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTT
T ss_pred             cchhhhccccccHHHHHHHHHHHHHHhccH---hhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHH
Confidence            1      11234777888888888875432   2345677888889999999999999999999987542 22111 123


Q ss_pred             CChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714          286 GVCPRLVELLMHPSATVLIPALRTVGNIVTG  316 (384)
Q Consensus       286 g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (384)
                      .+++.++..+.++++.||..|+++||.++..
T Consensus       407 ~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         407 QAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             THHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999753

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=2.6e-07  Score=83.04  Aligned_cols=275  Identities=13%  Similarity=0.070  Sum_probs=178.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHH
Q 016714           78 SMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVI-KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVV  156 (384)
Q Consensus        78 ~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i  156 (384)
                      .+...+.+++.-....+...+..+++.. .......- .......+-.+...++ .+.+..++.++..+... ++.|..+
T Consensus       126 ~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr~-~~~R~~f  202 (477)
T d1ho8a_         126 LFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAVI-PEYRDVI  202 (477)
T ss_dssp             HHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred             HHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhcC-ccHHHHH
Confidence            3444455566666667777777776653 33332211 1112333333435556 78899999999998884 8888887


Q ss_pred             Hh--cCChHHHHHhhcC-----------------CCHHHHHHHHHHHHhhhCCCCchhhHHHhc--CChHHHHHHhcccc
Q 016714          157 IE--HGAVPMFVQLLSS-----------------GSDDVREQAVWALGNVAGDSPSCRDLVLSS--GALMPLLAQLNEHS  215 (384)
Q Consensus       157 ~~--~g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~--g~i~~L~~~l~~~~  215 (384)
                      ..  ...++.|+..|..                 ....++-+++.+++-++.+.+ ....+.+.  +.++.++.++....
T Consensus       203 w~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~~s~  281 (477)
T d1ho8a_         203 WLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITI  281 (477)
T ss_dssp             HTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCC
T ss_pred             HHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHHhhh
Confidence            54  3456666666642                 124678888999998887554 44444444  34888889887788


Q ss_pred             hhHHHHHHHHHHhhhhcCCCCCCh-----hhh-hchHHHHHHhhcc---CCHhHHHHHHHHHHH-------hccC-----
Q 016714          216 KLSMLRNATWTLSNFCRGKPPTPF-----EQV-KPALPILQRLIHL---NDEEVLTDACWALSY-------LSDG-----  274 (384)
Q Consensus       216 ~~~~~~~a~~~L~~L~~~~~~~~~-----~~~-~~~~~~L~~lL~~---~~~~i~~~a~~~l~~-------l~~~-----  274 (384)
                      .+.+.+-++.+|.|++........     ..+ .++++. +..|..   .|+++..+.-..-..       ++..     
T Consensus       282 KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~  360 (477)
T d1ho8a_         282 KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVA  360 (477)
T ss_dssp             SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            899999999999999986422111     112 334444 444532   467665543322111       1111     


Q ss_pred             ---------Ch-HHHHHHHH----------cCChHHHHHhcC----------CCChhhHHHHHHHHHHhhcCChHHHHHH
Q 016714          275 ---------PN-DKIQAVIE----------AGVCPRLVELLM----------HPSATVLIPALRTVGNIVTGDDAQTQFV  324 (384)
Q Consensus       275 ---------~~-~~~~~~~~----------~g~~~~L~~lL~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~i  324 (384)
                               ++ ..-+.+..          ..++..|+++|.          +.++.+..-||.=||.++...|.....+
T Consensus       361 Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il  440 (477)
T d1ho8a_         361 ELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVL  440 (477)
T ss_dssp             HHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred             HHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHH
Confidence                     11 11111211          135788999985          2366778889999999999999998888


Q ss_pred             HHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          325 IDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       325 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      -+.|+=..++.++.++ +++||.+|..|+.-+..
T Consensus       441 ~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         441 DKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            8899999999999999 99999999999987764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=5.3e-07  Score=89.29  Aligned_cols=277  Identities=19%  Similarity=0.205  Sum_probs=175.6

Q ss_pred             HHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714           76 IPSMVQGVWSED--PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT  153 (384)
Q Consensus        76 l~~lv~~l~s~~--~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  153 (384)
                      ++.++..+.+++  ..++..++..+......-...........-+++.+...+.+++ ++++..++.+|..++...++..
T Consensus       174 l~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~v~~~~~~~l~~l~~~~~~~~  252 (876)
T d1qgra_         174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhHHHH
Confidence            556666666543  5778888888877765321000001112234666777777777 9999999999999988767666


Q ss_pred             HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchh----------------h----HHHhcCChHHHHHHhcc
Q 016714          154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR----------------D----LVLSSGALMPLLAQLNE  213 (384)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~----------------~----~i~~~g~i~~L~~~l~~  213 (384)
                      ...+.....+.+...+.+.+++++..++..+..++.......                .    .......++.+...+..
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  332 (876)
T d1qgra_         253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  332 (876)
T ss_dssp             HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence            666655566777777888889999888888777763211100                0    00011122333333321


Q ss_pred             c------chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCC
Q 016714          214 H------SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGV  287 (384)
Q Consensus       214 ~------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~  287 (384)
                      .      .+..+...+..++..++...+.   .....+++.+...+.++++..+..++.+++.+..+.......-.-..+
T Consensus       333 ~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~  409 (876)
T d1qgra_         333 QDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA  409 (876)
T ss_dssp             CCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHH
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhhh---hhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence            1      1223566666777666654321   233556677778888899999999999999998764432222223457


Q ss_pred             hHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH-HHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ-FVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ++.+...+.++++.++..++++++.++...+.... ...-..+++.+...+.+  ++.++..++|++.+++.
T Consensus       410 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         410 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC--CHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999854332110 00001234555555543  57899999999999874

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2e-07  Score=96.20  Aligned_cols=233  Identities=14%  Similarity=0.170  Sum_probs=155.8

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL  197 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (384)
                      +++.+...+....++.++.+++.+|+.+............ ..+++.|+..+.+++..++..|+.+|+.++...+..   
T Consensus       131 l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~-~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---  206 (1207)
T d1u6gc_         131 ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---  206 (1207)
T ss_dssp             HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---
Confidence            4555666565555488999999999887653221111111 135677778888899999999999999998654321   


Q ss_pred             HHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChH
Q 016714          198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPND  277 (384)
Q Consensus       198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~  277 (384)
                      . -...++.++..+..+.+....+.++.++..+++..+..-......++|.+...+..++++++..++.++..++...+.
T Consensus       207 ~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         207 V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChh
Confidence            1 123567777777566666667778888888887654433344578899999999999999999999988887754332


Q ss_pred             HHHHHHHcCChHHHHHhc-------------------------------------CCCChhhHHHHHHHHHHhhcCChHH
Q 016714          278 KIQAVIEAGVCPRLVELL-------------------------------------MHPSATVLIPALRTVGNIVTGDDAQ  320 (384)
Q Consensus       278 ~~~~~~~~g~~~~L~~lL-------------------------------------~~~~~~v~~~a~~~l~nl~~~~~~~  320 (384)
                      ...... ..+++.+...+                                     .+.+..++..++.+++.++...++.
T Consensus       286 ~~~~~~-~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~  364 (1207)
T d1u6gc_         286 EVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM  364 (1207)
T ss_dssp             CCHHHH-HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTT
T ss_pred             hhhhhH-HHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence            111100 01111111111                                     1234578889999999998776655


Q ss_pred             HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          321 TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       321 ~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      ...+. ..+++.+...+.+. ++.+|..+..++..+..
T Consensus       365 l~~~~-~~~~~~L~~~l~d~-~~~vr~~~~~~l~~l~~  400 (1207)
T d1u6gc_         365 LPEFY-KTVSPALISRFKER-EENVKADVFHAYLSLLK  400 (1207)
T ss_dssp             HHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHH
Confidence            54443 35889999999887 88999999888887763

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=1.3e-06  Score=86.11  Aligned_cols=275  Identities=13%  Similarity=0.097  Sum_probs=165.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC-CcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714           77 PSMVQGVWSEDPALQLEATTQFRKLLSIERS-PPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV  155 (384)
Q Consensus        77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  155 (384)
                      ..++..+.++++.++..++.++..++..+-+ ..+.     .+++.|++.+.+++...++..|+.+|+.++.........
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wp-----eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~  172 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP-----ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA  172 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH-----HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchH-----HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            5566777888899999999988887653201 1122     357888888887665678888999999998643332221


Q ss_pred             HHh--cCChHHHHHhhc--CCCHHHHHHHHHHHHhhhCCCCchhh-HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714          156 VIE--HGAVPMFVQLLS--SGSDDVREQAVWALGNVAGDSPSCRD-LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF  230 (384)
Q Consensus       156 i~~--~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~-~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L  230 (384)
                      +..  ...++.++..+.  ..+..++..++.+++++....+..-. .......++.+...+ .+.+++++..++.++..+
T Consensus       173 ~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~i  251 (861)
T d2bpta1         173 LVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT-QAEDIEVQAAAFGCLCKI  251 (861)
T ss_dssp             TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHh-cCCCHHHHHHHHHHHHHH
Confidence            111  012333344333  35689999999999998754332111 111122455566666 677888999999999988


Q ss_pred             hcCCCCCChhhhhchHH-HHHHhhccCCHhHHHHHHHHHHHhccCChHHHHH----------------------------
Q 016714          231 CRGKPPTPFEQVKPALP-ILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQA----------------------------  281 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~~-~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~----------------------------  281 (384)
                      +...+..-.......+. .+.....+.++.++..++..+..++.........                            
T Consensus       252 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~  331 (861)
T d2bpta1         252 MSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLN  331 (861)
T ss_dssp             HHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            87544332333333333 2334445666777766665555443211000000                            


Q ss_pred             -----------------------------HHHcCChH----HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcC
Q 016714          282 -----------------------------VIEAGVCP----RLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNG  328 (384)
Q Consensus       282 -----------------------------~~~~g~~~----~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g  328 (384)
                                                   .....+++    .+...+.+.+...+..++.+++.++.+.......-.-..
T Consensus       332 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~  411 (861)
T d2bpta1         332 LLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQ  411 (861)
T ss_dssp             HTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHH
T ss_pred             HHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence                                         00011122    222334556667778888888888776543322222234


Q ss_pred             chHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          329 VLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       329 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      +++.+...+.++ ++.+|..++|+++.++.
T Consensus       412 ~l~~l~~~l~d~-~~~vr~~a~~~l~~l~~  440 (861)
T d2bpta1         412 ALPSILNLMNDQ-SLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             HHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCc-chhhhhHHHHHHHHHHH
Confidence            788899999888 89999999999999874

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.50  E-value=1.7e-08  Score=73.98  Aligned_cols=109  Identities=20%  Similarity=0.250  Sum_probs=88.6

Q ss_pred             hcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHH
Q 016714          169 LSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPI  248 (384)
Q Consensus       169 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~  248 (384)
                      |.++++.++..|+++|+.+..            ..+++|+..| .+.++.++..++++|.++..          ...+|.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l-~d~~~~vR~~a~~~L~~~~~----------~~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESL-SNEDWRIRGAAAWIIGNFQD----------ERAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGG-GCSCHHHHHHHHHHHGGGCS----------HHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHH-cCCCHHHHHHHHHHHHhcch----------hhhHHH
Confidence            456777888888888887621            2567888888 67889999999999987653          357899


Q ss_pred             HHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714          249 LQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG  311 (384)
Q Consensus       249 L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~  311 (384)
                      |..+|.++++.++..++++|+.+..  +         +.++.|..++.++++.++..|+.+|.
T Consensus        58 L~~~l~d~~~~VR~~a~~aL~~i~~--~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDDSGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHCCTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccchhHHHHHHHHHHHHhCc--c---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999999999999999998742  1         34678888999999999999988874

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.48  E-value=1.5e-08  Score=74.33  Aligned_cols=109  Identities=18%  Similarity=0.223  Sum_probs=88.6

Q ss_pred             hcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChH
Q 016714          126 LGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALM  205 (384)
Q Consensus       126 L~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~  205 (384)
                      |++++ +.+|..|+++|+.+..            .+++.|+..|.++++.++..++++|+++..           .+.++
T Consensus         1 L~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~   56 (111)
T d1te4a_           1 MADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVE   56 (111)
T ss_dssp             CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHH
T ss_pred             CCCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHH
Confidence            34555 7888888888876532            367889999999999999999999998742           12567


Q ss_pred             HHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHH
Q 016714          206 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALS  269 (384)
Q Consensus       206 ~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~  269 (384)
                      .|+.+| .+.++.++..++++|..+..          ...+|.|..++.++++.++..|+.+|.
T Consensus        57 ~L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            888988 67889999999999998743          367888999999999999999988764

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=1.1e-05  Score=79.09  Aligned_cols=268  Identities=12%  Similarity=0.055  Sum_probs=171.2

Q ss_pred             HHHH-HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCCchhHH
Q 016714           77 PSMV-QGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD-MPQLQFEAAWALTNVASGTSEHTR  154 (384)
Q Consensus        77 ~~lv-~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~~  154 (384)
                      ..++ ..+.+.|+.++..|-..|.++...+  +       .+.+..|.+.+.+.+ ++.+|..|+-.|.|..........
T Consensus         7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~--~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~   77 (861)
T d2bpta1           7 AQLLENSILSPDQNIRLTSETQLKKLSNDN--F-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKT   77 (861)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHHHHHC--H-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--c-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhh
Confidence            3444 4467899999999999998775421  1       135777888886533 378899999999887653322111


Q ss_pred             HH--------H----hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-CchhhHHHhcCChHHHHHHhcccchhHHHH
Q 016714          155 VV--------I----EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS-PSCRDLVLSSGALMPLLAQLNEHSKLSMLR  221 (384)
Q Consensus       155 ~i--------~----~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~  221 (384)
                      ..        +    ...+-..++..+.++++.++..++.+++.++... +..+  .  ...++.|+..+....+...+.
T Consensus        78 ~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~--w--peli~~L~~~~~s~~~~~~~~  153 (861)
T d2bpta1          78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA--W--PELMKIMVDNTGAEQPENVKR  153 (861)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC--C--HHHHHHHHHHTSTTSCHHHHH
T ss_pred             hhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc--h--HHHHHHHHHHhcCCCcHHHHH
Confidence            10        0    0112355677778889999999999999987421 1100  0  014556666664445566777


Q ss_pred             HHHHHHhhhhcCCCCCCh---hhhhchHHHHHHhhcc--CCHhHHHHHHHHHHHhccCChHHHH-HHHHcCChHHHHHhc
Q 016714          222 NATWTLSNFCRGKPPTPF---EQVKPALPILQRLIHL--NDEEVLTDACWALSYLSDGPNDKIQ-AVIEAGVCPRLVELL  295 (384)
Q Consensus       222 ~a~~~L~~L~~~~~~~~~---~~~~~~~~~L~~lL~~--~~~~i~~~a~~~l~~l~~~~~~~~~-~~~~~g~~~~L~~lL  295 (384)
                      .++.+|..+|...+....   .....+++.+...+.+  .+..++..++.++.++...-..... ......+++.+...+
T Consensus       154 ~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  233 (861)
T d2bpta1         154 ASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT  233 (861)
T ss_dssp             HHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHh
Confidence            888999999876432222   2224455555555543  4578999999999988765443221 112234567788888


Q ss_pred             CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          296 MHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       296 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      .++++.++..++.++..++...++.....+..-+...+.....+. ++.++..++-.+..++.
T Consensus       234 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         234 QAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICE  295 (861)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHH
Confidence            999999999999999999865444333223222223334444555 88899998888887764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=5e-06  Score=82.10  Aligned_cols=276  Identities=16%  Similarity=0.182  Sum_probs=168.4

Q ss_pred             CHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCCch
Q 016714           75 SIPSMVQGVWSED--PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD-MPQLQFEAAWALTNVASGTSE  151 (384)
Q Consensus        75 ~l~~lv~~l~s~~--~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~  151 (384)
                      .++.+++.+.+++  ...+..++.++..++..- .+..-.-.-..+++.++..+.+++ +..++..++.++.+.......
T Consensus       129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~-~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  207 (876)
T d1qgra_         129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhh
Confidence            4788888887654  566777888888775421 111111112346788888886543 368899999999887653222


Q ss_pred             hHH-HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714          152 HTR-VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF  230 (384)
Q Consensus       152 ~~~-~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L  230 (384)
                      ... .....-.++.+...+.+++++++..++.+|..++...+..-...+.......+...+ .+.+.++...++..+..+
T Consensus       208 ~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~i  286 (876)
T d1qgra_         208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHH
Confidence            111 111122466777788889999999999999999865543222222222333334444 445555666555555544


Q ss_pred             hcC---------------C-CC-CCh----hhhhchHHHHHHhhccC-------CHhHHHHHHHHHHHhccCChHHHHHH
Q 016714          231 CRG---------------K-PP-TPF----EQVKPALPILQRLIHLN-------DEEVLTDACWALSYLSDGPNDKIQAV  282 (384)
Q Consensus       231 ~~~---------------~-~~-~~~----~~~~~~~~~L~~lL~~~-------~~~i~~~a~~~l~~l~~~~~~~~~~~  282 (384)
                      +..               . +. ...    .....++|.+...+...       +..++..+..++..++.......   
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---  363 (876)
T d1qgra_         287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---
T ss_pred             HHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh---
Confidence            431               0 11 111    11234445555554321       23467777777777664322211   


Q ss_pred             HHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714          283 IEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD-AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA  358 (384)
Q Consensus       283 ~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  358 (384)
                      + ..+++.+...+.+++...+..++..++.+..+.. ...... -..+++.+...+.++ ++.++..|+|+++.++.
T Consensus       364 ~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~l~d~-~~~vr~~a~~~l~~~~~  437 (876)
T d1qgra_         364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP-SVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             h-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHhhcCC-ccHHHHHHHHHHHHHHH
Confidence            1 1235667777788889999999999999987644 333322 235788899999988 89999999999999885

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=1.9e-05  Score=70.77  Aligned_cols=228  Identities=16%  Similarity=0.174  Sum_probs=156.4

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--HcCCHHHHHHhhcC----------------CCChHHHHHHHHHHHHH
Q 016714           84 WSEDPALQLEATTQFRKLLSIERSPPIDEVI--KAGVVPRFVEFLGR----------------HDMPQLQFEAAWALTNV  145 (384)
Q Consensus        84 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~i~~Lv~lL~~----------------~~~~~~~~~a~~~L~nl  145 (384)
                      .+++...+..|++++..++..  .+.+..+.  +...++.|++.|..                +...+++++++.|+.-+
T Consensus       175 ~~~~~~~~~i~v~~lq~llr~--~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlL  252 (477)
T d1ho8a_         175 NIEQMDTCYVCIRLLQELAVI--PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL  252 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTS--HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHhcC--ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHH
Confidence            567788888899999888763  34444443  34556666666642                11158899999999999


Q ss_pred             hcCCchhHHHHHhc--CChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCCCc-----hhhHHHhcCChHHHHHHhccc--c
Q 016714          146 ASGTSEHTRVVIEH--GAVPMFVQLLS-SGSDDVREQAVWALGNVAGDSPS-----CRDLVLSSGALMPLLAQLNEH--S  215 (384)
Q Consensus       146 ~~~~~~~~~~i~~~--g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~-----~~~~i~~~g~i~~L~~~l~~~--~  215 (384)
                      +. +++....+.+.  +.++.|+.+++ +..+++...++.+|.|++.....     +...++..++ .+++..|...  .
T Consensus       253 SF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~-l~~l~~L~~r~~~  330 (477)
T d1ho8a_         253 TF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYS  330 (477)
T ss_dssp             TT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCS
T ss_pred             Hc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcch-hHHHHHHhcCCCC
Confidence            98 47777777765  34888888886 47789999999999999864322     2233344444 4556666332  3


Q ss_pred             hhHHHHHHHHH---------------------HhhhhcCCCCCChh------------hhhchHHHHHHhhc--------
Q 016714          216 KLSMLRNATWT---------------------LSNFCRGKPPTPFE------------QVKPALPILQRLIH--------  254 (384)
Q Consensus       216 ~~~~~~~a~~~---------------------L~~L~~~~~~~~~~------------~~~~~~~~L~~lL~--------  254 (384)
                      |+++....-..                     .+--.+..|....+            ....++..|+.+|.        
T Consensus       331 Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~  410 (477)
T d1ho8a_         331 DEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDV  410 (477)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhccccccc
Confidence            55544332221                     11111222221111            11356778888885        


Q ss_pred             --cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714          255 --LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT  315 (384)
Q Consensus       255 --~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (384)
                        +.|+.++.-||.=|+.++.+.+.....+-+.|+=..+++++.|+++.|+..|+.|++-+..
T Consensus       411 ~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         411 NAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence              3478889999999999999888777777788999999999999999999999999998754

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0013  Score=55.20  Aligned_cols=211  Identities=14%  Similarity=0.121  Sum_probs=149.9

Q ss_pred             HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchh----hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714          155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR----DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF  230 (384)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~----~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L  230 (384)
                      .+...+.+..|+..|..-+-+.+..+..+++++.......+    +.+...  .+.|..++....++++.-.+...|...
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence            34456788889999988888999999999999986544333    334432  234444443445667777777777777


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHHhcCCCChhhHHHHH
Q 016714          231 CRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA---GVCPRLVELLMHPSATVLIPAL  307 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~---g~~~~L~~lL~~~~~~v~~~a~  307 (384)
                      .+...-.......+.+-.+.++++.++-++..+|..++..+..........++..   .++.....+|.+++.-.+..++
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            7764333333346667778888899999999999999988777666555555554   3567778899999999999999


Q ss_pred             HHHHHhhcCCh--HH-HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHH
Q 016714          308 RTVGNIVTGDD--AQ-TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA--GNRAQIQVHD  368 (384)
Q Consensus       308 ~~l~nl~~~~~--~~-~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~i~~l~  368 (384)
                      ..||.+.....  .. ..++-+..-+..++.+|.+. +..++-+|--++--+++  ..+..|..++
T Consensus       222 KLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANpnKp~~I~~IL  286 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDIL  286 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCCCCCHHHHHHH
Confidence            99999986432  22 22333345688899999998 89999999999998888  3334444443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.012  Score=49.29  Aligned_cols=242  Identities=13%  Similarity=0.150  Sum_probs=164.9

Q ss_pred             HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH----HHHHhc-CChHHHHHhhcCCCHHHHHHHHHHHHh
Q 016714          112 EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT----RVVIEH-GAVPMFVQLLSSGSDDVREQAVWALGN  186 (384)
Q Consensus       112 ~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~----~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~n  186 (384)
                      .+...+++..|+..|..-+ -+-+..++.+++++.......+    +.+... .++..|+...  +++++.-.|-..|.-
T Consensus        64 e~~~~d~l~~Li~~L~~L~-fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLRE  140 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCC-CchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHH
Confidence            4556788999999998877 7899999999999987544433    333331 2334444433  345565566666666


Q ss_pred             hhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh----hchHHHHHHhhccCCHhHHH
Q 016714          187 VAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV----KPALPILQRLIHLNDEEVLT  262 (384)
Q Consensus       187 l~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~----~~~~~~L~~lL~~~~~~i~~  262 (384)
                      .+.... ....++....+..+.+.+ +.++-++...|..++..+....+....+..    ...+..+..+|.+++--++.
T Consensus       141 cik~e~-lak~iL~s~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrR  218 (330)
T d1upka_         141 CIRHEP-LAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  218 (330)
T ss_dssp             HHTSHH-HHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHhhHH-HHHHHHccHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHH
Confidence            665554 556677777888888888 777788889999998887775433222222    45666778899999999999


Q ss_pred             HHHHHHHHhccCChHHH---HHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC---hHHHHHHHHc--CchHHHH
Q 016714          263 DACWALSYLSDGPNDKI---QAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD---DAQTQFVIDN--GVLPCLY  334 (384)
Q Consensus       263 ~a~~~l~~l~~~~~~~~---~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~---~~~~~~i~~~--g~l~~L~  334 (384)
                      .++..|+.+........   ..+-+..-+..++.+|.+.+..++..|..++--.++..   +.....+...  .++..|.
T Consensus       219 qSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~  298 (330)
T d1upka_         219 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLS  298 (330)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHH
Confidence            99999999886543221   12223355888999999999999999999998888753   2344434432  4566666


Q ss_pred             HHhccC-CchhHHHHHHHHHHHHhc
Q 016714          335 QLLTQN-HKKSIKKEACWTISNITA  358 (384)
Q Consensus       335 ~ll~~~-~~~~v~~~a~~~L~nl~~  358 (384)
                      +...+. ++.....+=...+..|..
T Consensus       299 ~f~~d~~~DeqF~~EK~~lI~~I~~  323 (330)
T d1upka_         299 KFQNDRTEDEQFNDEKTYLVKQIRD  323 (330)
T ss_dssp             HTTTTC-CCSHHHHHHHHHHHHHHT
T ss_pred             hCCCCCCchhhHHHHHHHHHHHHHh
Confidence            665432 356666666666666654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.62  E-value=0.002  Score=52.43  Aligned_cols=41  Identities=17%  Similarity=0.180  Sum_probs=27.5

Q ss_pred             hhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 016714          125 FLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWAL  184 (384)
Q Consensus       125 lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L  184 (384)
                      +|.++. .+++..|++                  .-.+..|..+++++++.|+..+++.|
T Consensus        50 ~l~~p~-~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~L   90 (233)
T d1lrva_          50 YLADPF-WERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRL   90 (233)
T ss_dssp             GTTCSS-HHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTS
T ss_pred             HhcCCc-HHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHc
Confidence            556666 677765543                  23366777788888888888887654

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.24  E-value=0.098  Score=44.78  Aligned_cols=157  Identities=13%  Similarity=0.104  Sum_probs=102.3

Q ss_pred             HHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC----C------CChHHHHHHHHHHHHHh
Q 016714           78 SMVQGVWSED-PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR----H------DMPQLQFEAAWALTNVA  146 (384)
Q Consensus        78 ~lv~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~----~------~~~~~~~~a~~~L~nl~  146 (384)
                      ..+..|++.- .+.....+..|+--+..++...++.+ ..+++..|+.+|..    +      .+...+.++..||..+.
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            4556665543 23334455666555554323334555 45667778777741    1      11568899999999998


Q ss_pred             cCCchhHHHH-HhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC--CchhhHHH----------hcCChHHHHHHhcc
Q 016714          147 SGTSEHTRVV-IEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS--PSCRDLVL----------SSGALMPLLAQLNE  213 (384)
Q Consensus       147 ~~~~~~~~~i-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~--~~~~~~i~----------~~g~i~~L~~~l~~  213 (384)
                      .. ......+ -..+++..++..|.++++.++..|+..|..+|...  +.....++          +.+-+.++++.+..
T Consensus        85 n~-~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~  163 (343)
T d2bnxa1          85 NN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  163 (343)
T ss_dssp             SS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             cc-HHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Confidence            85 4444444 45678999999999999999999999999998532  22222222          34557788888866


Q ss_pred             cchhHHHHHHHHHHhhhhcCCCC
Q 016714          214 HSKLSMLRNATWTLSNFCRGKPP  236 (384)
Q Consensus       214 ~~~~~~~~~a~~~L~~L~~~~~~  236 (384)
                      ..+.+....++..+-.++.+.+.
T Consensus       164 ~~~~ey~~a~m~lIN~li~~~~d  186 (343)
T d2bnxa1         164 GTSIALKVGCLQLINALITPAEE  186 (343)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             cccHHHHHHHHHHHHHHHcCccc
Confidence            66677777777777777766444

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.23  E-value=0.0018  Score=52.79  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=16.7

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHH
Q 016714          119 VPRFVEFLGRHDMPQLQFEAAWAL  142 (384)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L  142 (384)
                      +..|..++++++ +.++..+++.|
T Consensus        68 ~~~L~~Ll~D~d-~~VR~~AA~~L   90 (233)
T d1lrva_          68 VEALTPLIRDSD-EVVRRAVAYRL   90 (233)
T ss_dssp             GGGGGGGTTCSS-HHHHHHHHTTS
T ss_pred             HHHHHHHhcCCC-HHHHHHHHHHc
Confidence            556777778777 88888887643

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.081  Score=51.73  Aligned_cols=287  Identities=10%  Similarity=0.088  Sum_probs=137.0

Q ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-------HHHH--HcCCHHHHHHhhcCCCChHHH----HHHHH
Q 016714           74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPI-------DEVI--KAGVVPRFVEFLGRHDMPQLQ----FEAAW  140 (384)
Q Consensus        74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-------~~~~--~~g~i~~Lv~lL~~~~~~~~~----~~a~~  140 (384)
                      ..++.++..|++++..++..|++++..++........       ..+.  -..++..++..+.........    ..+..
T Consensus       496 ~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~  575 (959)
T d1wa5c_         496 ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMR  575 (959)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHH
T ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence            3577788888888999999999999988754211100       0000  012344555555433211111    22444


Q ss_pred             HHHHHhcCCchhHHHHHhcCChHHHHHhh----cC-CCHHHHHHHHHHHHhhhCC-CCchhhHHHhcCChHHHHHHhccc
Q 016714          141 ALTNVASGTSEHTRVVIEHGAVPMFVQLL----SS-GSDDVREQAVWALGNVAGD-SPSCRDLVLSSGALMPLLAQLNEH  214 (384)
Q Consensus       141 ~L~nl~~~~~~~~~~i~~~g~i~~L~~lL----~~-~~~~v~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~~l~~~  214 (384)
                      ++..+.....+....... .+++.|...+    .+ .++.....+..+|+.+... ++.....+ ....++.+...+ ..
T Consensus       576 ~l~~ii~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l-~~~l~p~i~~~~-~~  652 (959)
T d1wa5c_         576 SIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVF-SE  652 (959)
T ss_dssp             HHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHH-HT
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHH-hc
Confidence            554443311111111111 1233443333    22 4566777777788877643 23222222 233566666666 44


Q ss_pred             chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHh
Q 016714          215 SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVEL  294 (384)
Q Consensus       215 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~l  294 (384)
                      ...++...+...+..+....+... ......++.+..............+..++.+......+....  ..+++..+..+
T Consensus       653 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~l~~~~~~  729 (959)
T d1wa5c_         653 DIQEFIPYVFQIIAFVVEQSATIP-ESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPD--LVPVLGIFQRL  729 (959)
T ss_dssp             TCTTTHHHHHHHHHHHHHHCSSCC-TTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSC--SHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHhCHHhhcc--hHHHHHHHHHH
Confidence            444455555555555554432211 122334444433222222223333333333322211110000  01234444555


Q ss_pred             cCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHh
Q 016714          295 LMHPSATVLIPALRTVGNIVTGDD-AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDS  369 (384)
Q Consensus       295 L~~~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~  369 (384)
                      +.....  ...++..++.+....+ ......+. .++..+...+.+...+.+....+|.++.++. .++...-.+++
T Consensus       730 l~~~~~--~~~~~~ll~~ii~~~~~~~~~~~l~-~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  803 (959)
T d1wa5c_         730 IASKAY--EVHGFDLLEHIMLLIDMNRLRPYIK-QIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFID  803 (959)
T ss_dssp             HTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HCCCcc--hHHHHHHHHHHHHHCchhhhHhHHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            554432  3557777777764433 22222221 3555666667666567788889999998886 35555444444

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.31  E-value=0.69  Score=39.09  Aligned_cols=204  Identities=17%  Similarity=0.174  Sum_probs=122.0

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHHhhhC----
Q 016714          118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS----GSDDVREQAVWALGNVAG----  189 (384)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----  189 (384)
                      .+..+.+++.++. ..- .+|...|..++... .-..     ..+..+..++.+    .++.++..++.++|+++.    
T Consensus        89 a~~~i~~~I~~~~-ls~-~ea~~~l~~l~~~~-~Pt~-----~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~  160 (336)
T d1lsha1          89 ALLFLKRTLASEQ-LTS-AEATQIVASTLSNQ-QATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA  160 (336)
T ss_dssp             HHHHHHHHHHTTC-SCH-HHHHHHHHHHHHTC-CCCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC-CCH-HHHHHHHHHHhccC-CCCH-----HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence            3455677776554 222 23334444444321 1111     134455556654    578899999999998863    


Q ss_pred             CCCchhhHHHhcCChHHHHHHhc---ccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcc-------CCHh
Q 016714          190 DSPSCRDLVLSSGALMPLLAQLN---EHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHL-------NDEE  259 (384)
Q Consensus       190 ~~~~~~~~i~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~-------~~~~  259 (384)
                      ..+.+.+     ..++.+...+.   ...+.+-...++.+|.|+-..          ..++.|..++..       .+..
T Consensus       161 ~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~i~~l~~~l~~~~~~~~~~~~~  225 (336)
T d1lsha1         161 NTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTR  225 (336)
T ss_dssp             TCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHH
T ss_pred             CCCCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHhccCCH----------hHHHHHHHHhcccccccccccHH
Confidence            3332322     23445555542   334455566778889988642          456777777743       2467


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc--CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHh
Q 016714          260 VLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL--MHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLL  337 (384)
Q Consensus       260 i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL--~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll  337 (384)
                      ++..|+|++..+....+..+.        +.+.+++  ...++++|..|+..|-..   .|..       ..+..+...+
T Consensus       226 vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P~~-------~~l~~i~~~l  287 (336)
T d1lsha1         226 VQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES---KPSV-------ALVSMVAVRL  287 (336)
T ss_dssp             HHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc---CCCH-------HHHHHHHHHH
Confidence            999999999999887664433        3344444  345678888888877542   2211       1344566677


Q ss_pred             ccCCchhHHHHHHHHHHHHhc-CCHH
Q 016714          338 TQNHKKSIKKEACWTISNITA-GNRA  362 (384)
Q Consensus       338 ~~~~~~~v~~~a~~~L~nl~~-~~~~  362 (384)
                      ....+..|+....-.|.|++. .+|.
T Consensus       288 ~~E~~~QV~sfv~S~l~~la~s~~P~  313 (336)
T d1lsha1         288 RREPNLQVASFVYSQMRSLSRSSNPE  313 (336)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             HhCcHHHHHHHHHHHHHHHHhCCCcc
Confidence            665577787777778888887 3443

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.48  Score=45.95  Aligned_cols=178  Identities=8%  Similarity=0.062  Sum_probs=99.2

Q ss_pred             hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch--------hhHHHh--c
Q 016714          132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC--------RDLVLS--S  201 (384)
Q Consensus       132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--------~~~i~~--~  201 (384)
                      +.++..++|+++..+....  ....  ..+++.++.+|.+++..++..|++++..++......        .+.+..  .
T Consensus       472 ~~lr~~~~~~i~~~~~~~~--~~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~  547 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLT--KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE  547 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSC--HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred             HHHHHHHHHHHHHHHhhcc--HHHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence            6789999999999876422  2222  247899999999999999999999999998532211        011100  0


Q ss_pred             CChHHHHHHhcccchh----HHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc----c-CCHhHHHHHHHHHHHhc
Q 016714          202 GALMPLLAQLNEHSKL----SMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIH----L-NDEEVLTDACWALSYLS  272 (384)
Q Consensus       202 g~i~~L~~~l~~~~~~----~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~----~-~~~~i~~~a~~~l~~l~  272 (384)
                      ..+..++..+......    .....++.++..+....+.........+++.+...+.    + .++.....+..+++.+.
T Consensus       548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~  627 (959)
T d1wa5c_         548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL  627 (959)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            1233444444222211    1122355555554433222223333445555554442    2 24667777777777776


Q ss_pred             cCC-hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714          273 DGP-NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV  314 (384)
Q Consensus       273 ~~~-~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (384)
                      ... ++.... ....++|.+...+..........++..++.+.
T Consensus       628 ~~~~~~~~~~-l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~  669 (959)
T d1wa5c_         628 NYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (959)
T ss_dssp             HTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HhcCchhHHH-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            432 222222 33445677777776655556666666655543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=94.77  E-value=0.99  Score=38.08  Aligned_cols=168  Identities=18%  Similarity=0.183  Sum_probs=98.7

Q ss_pred             ChHHHHHhhcCCC--HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhccc---chhHHHHHHHHHHh----hhh
Q 016714          161 AVPMFVQLLSSGS--DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEH---SKLSMLRNATWTLS----NFC  231 (384)
Q Consensus       161 ~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~---~~~~~~~~a~~~L~----~L~  231 (384)
                      ++..+..++.+..  .......++.|+....  | ..+      .+..+..++...   .++.+...+..+++    ..|
T Consensus        89 a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~--P-t~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSAEATQIVASTLSNQQ--A-TRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCC--C-CHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHhccCC--C-CHH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            4555666665533  3333444455544332  2 112      344555665322   23445455544444    445


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC-------CChhhHH
Q 016714          232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH-------PSATVLI  304 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~-------~~~~v~~  304 (384)
                      ...+......+..+...+.+.....+.+-..-++.+|+|+-.  +         +.++.|..++..       .+..++.
T Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~  228 (336)
T d1lsha1         160 ANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQA  228 (336)
T ss_dssp             TTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHH
Confidence            444444455555666666677777787777888999999742  2         346777777743       2467899


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhcc-CCchhHHHHHHHHHHHH
Q 016714          305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQ-NHKKSIKKEACWTISNI  356 (384)
Q Consensus       305 ~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~nl  356 (384)
                      .|++++.++....+.....        .+..++.+ ..++++|-.|..+|...
T Consensus       229 aAi~Alr~~~~~~p~~v~~--------~l~~i~~n~~e~~EvRiaA~~~lm~t  273 (336)
T d1lsha1         229 EAIMALRNIAKRDPRKVQE--------IVLPIFLNVAIKSELRIRSCIVFFES  273 (336)
T ss_dssp             HHHHTTTTGGGTCHHHHHH--------HHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhcCcHHHHH--------HHHHHHcCCCCChHHHHHHHHHHHhc
Confidence            9999999998876654332        33444433 33678888888777553

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.36  E-value=2.7  Score=35.33  Aligned_cols=168  Identities=12%  Similarity=0.162  Sum_probs=102.2

Q ss_pred             cCCchhHHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc
Q 016714          147 SGTSEHTRVVIEHGAVPMFVQLLSS-----------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS  215 (384)
Q Consensus       147 ~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~  215 (384)
                      .........+ ..+|+..|+.+|..           .+......++.||..+..........+...+.+..+...+ .++
T Consensus        33 t~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~  110 (343)
T d2bnxa1          33 NNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPA  110 (343)
T ss_dssp             HSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTT
T ss_pred             cCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHcc-CCC
Confidence            3334455555 34566667776631           1356777889999998877766666666777888888888 677


Q ss_pred             hhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc
Q 016714          216 KLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL  295 (384)
Q Consensus       216 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL  295 (384)
                      ...++..++..|+.+|.......      +.+               .++.++.+..        ..-+.+-+..++..|
T Consensus       111 ~~~tr~~a~elL~~lc~~~~~~~------g~~---------------~vL~Al~~~~--------~~~e~~RF~~lv~~l  161 (343)
T d2bnxa1         111 VPNMMIDAAKLLSALCILPQPED------MNE---------------RVLEAMTERA--------EMDEVERFQPLLDGL  161 (343)
T ss_dssp             SHHHHHHHHHHHHHHHTCCSSTT------HHH---------------HHHHHHHHHH--------HHHTSCTTHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHhccCCCc------hHH---------------HHHHHHHHHH--------HhcCCCcHHHHHHHH
Confidence            78888899999999987642111      111               1122222111        123345566777777


Q ss_pred             CCC-ChhhHHHHHHHHHHhhcCChH------HHHHHHHcCchHHHHHHhccCCchhHH
Q 016714          296 MHP-SATVLIPALRTVGNIVTGDDA------QTQFVIDNGVLPCLYQLLTQNHKKSIK  346 (384)
Q Consensus       296 ~~~-~~~v~~~a~~~l~nl~~~~~~------~~~~i~~~g~l~~L~~ll~~~~~~~v~  346 (384)
                      ... +...+..++..|..++.+.++      ....+...|+.+.+-.+=... ++.+.
T Consensus       162 ~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~-~~~L~  218 (343)
T d2bnxa1         162 KSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMK  218 (343)
T ss_dssp             STTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCC-CHHHH
T ss_pred             hccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccC-ChHHH
Confidence            544 456777777777777766542      234556677777666554443 44433

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.94  E-value=5.6  Score=33.19  Aligned_cols=190  Identities=11%  Similarity=0.079  Sum_probs=109.1

Q ss_pred             HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC
Q 016714          156 VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP  235 (384)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~  235 (384)
                      .++...+..|+.++.++++.-|......|..+-+.....|..+... +-..+.+.+.......-...+++.+..+..+-.
T Consensus       129 ~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~~-i~~if~~fi~e~~~~~gI~elLeil~sii~gf~  207 (343)
T d2jaka1         129 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIINGFA  207 (343)
T ss_dssp             TSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCC
T ss_pred             hCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHhhcCCCCccHHHHHHHHHHHHHhcc
Confidence            3334457788899999999999999999999987777777765543 455666666444444445566666666666643


Q ss_pred             CC-ChhhhhchHHHHHHhhccCC-HhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714          236 PT-PFEQVKPALPILQRLIHLND-EEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI  313 (384)
Q Consensus       236 ~~-~~~~~~~~~~~L~~lL~~~~-~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (384)
                      .+ ..+...-....++.+..+.. ...-..-..++......++.....+     +..|++.=-..++.=...-+.-|..+
T Consensus       208 ~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~-----i~~llk~WP~t~~~Kev~FL~el~~i  282 (343)
T d2jaka1         208 LPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEEI  282 (343)
T ss_dssp             SSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHHHH
Confidence            33 22222333344555544433 2233334444444444444333222     33344333223333344556666666


Q ss_pred             hcC-ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHH
Q 016714          314 VTG-DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI  353 (384)
Q Consensus       314 ~~~-~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L  353 (384)
                      ... .+...+.+.. .++..+...+.++ ...|.+.|....
T Consensus       283 l~~~~~~~f~~~~~-~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         283 LDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             HHTCCHHHHHHHHH-HHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             HHhCCHHHHHHHHH-HHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            544 3444444333 3677788888888 888888876554