Citrus Sinensis ID: 016727

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MGNNWFFMDFNGGDPYILPTEFFLARSLGDHLFSQSSYPYVPGSLALQGAFNCISKFTGAFLFWFTSGSSSNLSRRIAGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSESEYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAVPLDNAEIQMHESMGRSPCEVESHRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNHLAYGITLVFLQISLTHGTFLAYIRQIQTLIITAWKVLVLTSAKIFHYLWEL
Secondary Structure (PSIPRED)
ccccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccHHHHHcccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcEEEEEEEEEEcccEEEEEEEEccHHHHHHHccccccccHHHHcccccHHHHHHHcccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccEEEEEEEHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccccccccccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccHHHEEEEcccccccEccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccEEEEEccccEEEEEEEEEEEEEEEEEEcHHHHHHHHcHHHccccHHHHcccHHHHHHHHHHcccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mgnnwffmdfnggdpyilpTEFFLARSLgdhlfsqssypyvpgslalQGAFNCISKFTGAFLFWftsgsssnlsrriagnqhgskigsykssAQVKQITstghnltgfhlssnseseyacpvvfNKVSSSAIRRLFREGGKLHLSSVLSLAaavippldnvsskvlavpldnaeiqmhesmgrspceveshrcgalsfpdlsrtrhaveprtgiefpmildnvidgenyssstSEVLVGTGSRTIKIVKIKSLKVYAFAFYvhprsvceklgpkyASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNHLAYGITLVFLQISLTHGTFLAYIRQIQTLIITAWKVLVLTSAKIFHYLWEL
Flexible Loop (DISEMBL)
MGNNWFFMDFNGGDPYILPTEFFLARSLGDHLFSQSSYPYVPGSLALQGAFNCISKFTGAFLFWFTSGSSSNLSRRIAGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSESEYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAVPLDNAEIQMHESMGRSPCEVESHRCGalsfpdlsrtrhaveprtgiefpmILDNVIDGENYSSStsevlvgtgsrtikivKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNHLAYGITLVFLQISLTHGTFLAYIRQIQTLIITAWKVLVLTSAKIFHYLWEL
Low Complexity Region (SEG)
MGNNWFFMDFNGGDPYILPTEFFLARSLGDHLFSQSSYPYVPGSLALQGAFNCISKFTGAFLFWFTSGSSSNLSRRIAGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSESEYACPVVFNKVSSSAIRRLFREGGKLHlssvlslaaavIPPLDNVSSKVLAVPLDNAEIQMHESMGRSPCEVESHRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNHLAYGITLVFLQISLTHGTFLAYIRQIQTLIITAWKVLVLTSAKIFHYLWEL
Disordered region (IsUnstruct)
***NWFFMDFNGGDPYILPTEFFLARSLGDHLFSQSSYPYVPGSLALQGAFNCISKFTGAFLFWFTS***************************************GFH*******EYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAVPLDN********************CGALSFPDL**TRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNHLAYGITLVFLQISLTHGTFLAYIRQIQTLIITAWKVLVLTSAKIFHYLW**
Disordered Region (DISOPRED)
***NWFFMDFNGGDPYILPTEFFLARSLGDHLFSQSSYPYVPGSLALQGAFNCISKFTGAFLFWFTSG******************************TSTGHNLTGFHLSSNSESEYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAVPLDNA****************************S*T*HAVEPRTGIEFPMILDNVI**********EVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEK******************FYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEK*NHLAYGITLVFLQISLTHGTFLAYIRQIQTLIITAWKVLVLTSAKIFHYLWEL
Disordered Region (DISEMBL)
MGNNWFFMDFNGGDPYILPTEFFLARSLGDHLFSQSSYPYVPGSLALQGAFNCISKFTGAFLFWFTSGSSSNLSRRIAGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSESEYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAVPLDNAEIQMHE*************CGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNHLAYGITLVFLQISLTHGTFLAYIRQIQTLIITAWKVLVLTSAKIFHYLWEL
Disordered Region (DISPRO)
*GNNWFFMDFNGGDPYILPTEFFLARSLGDHLFSQSSYPYVPGSLALQGAFNCISKFTGAFLFWFTSGSSS***R*I*************SSAQVKQITSTGHNLTGFHLSSNSESEYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAVPLDNAEIQMHESMGRSPCEVESHRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNHLAYGITLVFLQISLTHGTFLAYIRQIQTLIITAWKVLVLTSAKIFHYLWEL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNNWFFMDFNGGDPYILPTEFFLARSLGDHLFSQSSYPYVPGSLALQGAFNCISKFTGAFLFWFTSGSSSNLSRRIAGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSESEYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAVPLDNAEIQMHESMGRSPCEVESHRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNHLAYGITLVFLQISLTHGTFLAYIRQIQTLIITAWKVLVLTSAKIFHYLWEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
255550201	428	conserved hypothetical protein [Ricinus	0.950	0.852	0.581	1e-103
224088716	422	predicted protein [Populus trichocarpa]	0.929	0.845	0.538	1e-103
225429702	422	PREDICTED: uncharacterized protein LOC10	0.927	0.843	0.548	1e-101
147857679	352	hypothetical protein VITISV_008554 [Viti	0.835	0.911	0.587	1e-101
356562163	413	PREDICTED: uncharacterized protein LOC10	0.932	0.866	0.475	1e-78
356554102	414	PREDICTED: uncharacterized protein LOC10	0.822	0.763	0.506	2e-77
297822143	386	hypothetical protein ARALYDRAFT_481490 [	0.770	0.766	0.498	9e-70
29649081	398	hypothetical protein [Arabidopsis thalia	0.773	0.746	0.489	2e-68
42569342	398	chalcone-flavanone isomerase-like protei	0.773	0.746	0.489	2e-68
334184478	373	chalcone-flavanone isomerase-like protei	0.768	0.790	0.489	6e-68

>gi|255550201|ref|XP_002516151.1| conserved hypothetical protein [Ricinus communis] gi|223544637|gb|EEF46153.1| conserved hypothetical protein [Ricinus communis]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/380 (58%), Positives = 262/380 (68%), Gaps = 15/380 (3%)

Query: 1   MGNNW-FFMDFNGGDPYILPTEFFLARSLGDHLFS-------QSSYPYVPGSLALQGAFN 52
           M NNW FFM+ + G P ILP E  L++SL   LFS       QS + Y+PGSLA Q   N
Sbjct: 1   MRNNWLFFMNPDDGSPNILPIEPLLSQSLRGPLFSPLDNSLHQSRFLYIPGSLAFQEVLN 60

Query: 53  CISKFTGAFLFWFTSGSSSNLSRRIAGNQHGSKIGSYKSSAQVKQITSTGHN-LTGFHLS 111
           C+SK  GA LFWFTS SSS+LS++I+G+Q G   GS     QVK IT   HN L GF + 
Sbjct: 61  CMSKLAGALLFWFTSTSSSSLSQQISGSQQGPGAGSSSQFTQVKNITLIRHNNLIGFPIG 120

Query: 112 SNSESEYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAVPLD 171
           S+S+SE +  VVF K+SS  +R L RE  +L     LSLA A++PP D +SSKVLAVPL+
Sbjct: 121 SSSQSESSSHVVFGKISSFMMRILSREAERLQSFPFLSLATALVPPFDRLSSKVLAVPLE 180

Query: 172 NAEIQMHESMGRSPCEVESHRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSS 231
           N E+Q+H S+ + PCEV+ H C +LSFPDL+  R AVEPRTGIEFPMILD+++  EN SS
Sbjct: 181 NGEVQVHRSVDQMPCEVDHHGCSSLSFPDLNWRRQAVEPRTGIEFPMILDSILAAENKSS 240

Query: 232 STSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYE 291
            +SEVLVGTGSRT+KI+KIKSLKVYAF FYVHP SVCEKLGPKYAS+  AELN C  FYE
Sbjct: 241 LSSEVLVGTGSRTMKIIKIKSLKVYAFGFYVHPNSVCEKLGPKYASVPAAELNNCRDFYE 300

Query: 292 DLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVN-HLAYGITLVF-----LQI 345
           DLLREDI MTVRLVINCNGMK+N VKD FEKSLR RL K N    Y     F       I
Sbjct: 301 DLLREDIGMTVRLVINCNGMKINTVKDAFEKSLRNRLLKTNPDTDYSCLRTFGSFFTKDI 360

Query: 346 SLTHGTFLAYIRQIQTLIIT 365
            L  GT + + R     +IT
Sbjct: 361 PLPAGTTVDFRRTADGQLIT 380

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088716|ref|XP_002308518.1| predicted protein [Populus trichocarpa] gi|222854494|gb|EEE92041.1| predicted protein [Populus trichocarpa]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/375 (53%), Positives = 249/375 (66%), Gaps = 18/375 (4%)

Query: 8   MDFNGGDPYILPTEFFLARSLGDHLFSQ-----------SSYPYVPGSLALQGAFNCISK 56
           MD NG   Y  P E  L++  G  LFSQ           S + +VP ++A Q A N +SK
Sbjct: 1   MDLNGESQYTFPLEPLLSQGFGAILFSQISSFVDNPLHQSGFLHVPETMAFQEALNHVSK 60

Query: 57  FTGAFLFWFTSGSSSNLSRRIAGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSES 116
             G  +FWFTS SSSNLSR+I+GNQ   + GS KS AQVK  TST H+L G    S S+ 
Sbjct: 61  LAGGLIFWFTSASSSNLSRQISGNQRSPRPGSCKSPAQVKNSTSTRHDLAGLGFGSISKG 120

Query: 117 EYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAVPLDNAEIQ 176
           E + PVVF+K+S+  +R L RE  +     VLSLAAA+IPP  N+SSK+LA+P +N ++ 
Sbjct: 121 ESSHPVVFSKISNFVMRLLHREAERRQSFPVLSLAAALIPPFGNLSSKLLAIPGENDDVP 180

Query: 177 MHESMGRSPCEVESHRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEV 236
           +H S G+ PCEVE   C  LSFPDL+ TRHAVEPRTGIEFPM+LD ++ G+N S  TSEV
Sbjct: 181 VHASTGQRPCEVERSGCPGLSFPDLNWTRHAVEPRTGIEFPMLLD-ILAGQNRSRLTSEV 239

Query: 237 LVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLRE 296
           LV TGSRT+ I++IK+LK+YAF FYVHP SVC+KLGPKYAS+ + ELNK   FYEDLLRE
Sbjct: 240 LVATGSRTMTIIRIKTLKIYAFGFYVHPNSVCKKLGPKYASVPMGELNKRRDFYEDLLRE 299

Query: 297 DIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVN-HLAYGITLVF-----LQISLTHG 350
           DI MTVRLVINCNG+K+N VKD FEKSLR RL K N    Y     F       + L  G
Sbjct: 300 DISMTVRLVINCNGIKINTVKDAFEKSLRNRLAKTNPDTDYNCLTTFGSFFTKDVPLPVG 359

Query: 351 TFLAYIRQIQTLIIT 365
           T + + R     +IT
Sbjct: 360 TVVDFRRTADGQLIT 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429702|ref|XP_002280130.1| PREDICTED: uncharacterized protein LOC100266232 [Vitis vinifera] gi|296081726|emb|CBI20731.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/383 (54%), Positives = 250/383 (65%), Gaps = 27/383 (7%)

Query: 1   MGNNW-FFMDFNGGDPYILPTEFFLARSLGDHLFSQ-----------SSYPYVPGSLALQ 48
           M N W FFMDF+GG PYI PTE  ++ S G HL S            S   Y PGS ALQ
Sbjct: 1   MRNIWLFFMDFDGGSPYIDPTES-ISNSFGGHLLSHVTSFVDNSVYGSRRIYAPGSAALQ 59

Query: 49  GAFNCISKFTGAFLFWFTSGSSSNLSRRIAGNQHGSKIGSYKSSAQVKQITSTGHNLTGF 108
            AF+CISKF GA L   +SGS+SN+  R +G+ H SK  ++KS A+V    S  HNLTGF
Sbjct: 60  EAFDCISKFAGAVLLQLSSGSNSNIRHRSSGDPHVSKPKNWKSCAKVDPTCSCKHNLTGF 119

Query: 109 HLSSNSESEYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAV 168
             SS S+ + +  + F++VS+  IR+  RE   L    V +LAAA++PPLDN++ KV+AV
Sbjct: 120 CFSSRSKGKASGRLPFDEVSNFTIRQFCREVQGLESIPVFTLAAALVPPLDNLTPKVMAV 179

Query: 169 PLDNAEIQMHESMGRSPCEVESHRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGEN 228
           PL        E  G   CE+E  R    SFPDL+ TRHAVEPRTGIEFP ILDN++ GEN
Sbjct: 180 PL--------EDTGVRSCEIEHQRSSHFSFPDLNWTRHAVEPRTGIEFPTILDNILVGEN 231

Query: 229 YSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGG 288
            SS TSEVLVGTGSRT+KI+KIKSLKVYAF FYVHP  +CEKLGPKYASI V ELNK   
Sbjct: 232 NSSLTSEVLVGTGSRTMKIIKIKSLKVYAFGFYVHPLLICEKLGPKYASIPVDELNKRQD 291

Query: 289 FYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVN-HLAYGITLVF----- 342
           FYEDLLREDI+MTVRLV+NCNGMK+N V+D FEKSLR RL K N    Y     F     
Sbjct: 292 FYEDLLREDINMTVRLVVNCNGMKINTVRDAFEKSLRNRLLKTNPDTDYQCLTTFGSYFT 351

Query: 343 LQISLTHGTFLAYIRQIQTLIIT 365
             I L  GT + + R     +IT
Sbjct: 352 QDIPLPAGTTIDFRRTADGQLIT 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857679|emb|CAN82880.1| hypothetical protein VITISV_008554 [Vitis vinifera]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/342 (58%), Positives = 238/342 (69%), Gaps = 21/342 (6%)

Query: 1   MGNNW-FFMDFNGGDPYILPTEFFLARSLGDHLFSQ-----------SSYPYVPGSLALQ 48
           M N W FFMDF+GG PYI PTE  ++ S G HL S            S   Y PGS ALQ
Sbjct: 1   MRNIWLFFMDFDGGSPYIDPTES-ISNSFGGHLLSHVTSFVDNSVYGSRRIYAPGSAALQ 59

Query: 49  GAFNCISKFTGAFLFWFTSGSSSNLSRRIAGNQHGSKIGSYKSSAQVKQITSTGHNLTGF 108
            AF+CISKF GA L   +SGS+SN+  R +G+ H SK  ++KS A+V Q  S  HNLTGF
Sbjct: 60  EAFDCISKFAGAVLLRLSSGSNSNIRHRSSGDPHVSKPKNWKSCAKVDQTCSCKHNLTGF 119

Query: 109 HLSSNSESEYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAV 168
             SS S+ + +  + F++VS+  IR+  RE   L    V +LAAA++PPLDN++ KV+AV
Sbjct: 120 CFSSRSKGKASGRLPFDEVSNFTIRQFCREVQGLESIPVFTLAAALVPPLDNLTPKVMAV 179

Query: 169 PLDNAEIQMHESMGRSPCEVESHRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGEN 228
           PL        E  G   CE+E  R    SFPDL+ TRHAVEPRTGIEFP ILDN++ GEN
Sbjct: 180 PL--------EDTGVRSCEIEHQRSSHFSFPDLNWTRHAVEPRTGIEFPTILDNILVGEN 231

Query: 229 YSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGG 288
            SS TSEVLVGTGSRT+KI+KIKSLKVYAF FYVHP  +CEKLGPKYASI V ELNK   
Sbjct: 232 NSSLTSEVLVGTGSRTMKIIKIKSLKVYAFGFYVHPLLICEKLGPKYASIPVDELNKRQD 291

Query: 289 FYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEK 330
           FYEDLLREDI+MTVRLV+NCNGMK+N V+D FEKSLR RL K
Sbjct: 292 FYEDLLREDINMTVRLVVNCNGMKINTVRDAFEKSLRNRLLK 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562163|ref|XP_003549342.1| PREDICTED: uncharacterized protein LOC100803025 [Glycine max]

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 177/372 (47%), Positives = 229/372 (61%), Gaps = 14/372 (3%)

Query: 1   MGNNWFFMDFNGGDPYILP-TEFFLARSLGDHLFSQSSYPYVPGSLALQGAFNCISKFTG 59
           M N++ ++     DP +    E F+ RS     F QS       S AL+ AF  +S+F G
Sbjct: 1   MNNDFVWLPSLYSDPELFTYLEPFVFRSSPSSHFLQS-MANNSRSFALEEAFGHVSRFAG 59

Query: 60  AFLFWFTSGSSSNLSRRIAGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSESEYA 119
           A LFW +  SSSNL+R + G+    + GS     QVK + ST   + GF      +S +A
Sbjct: 60  ALLFWLSRASSSNLARSLRGSSPPLRFGS----VQVKAV-STNVRVFGFPFGLKRKSSFA 114

Query: 120 CPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAVPLDNAEIQMHE 179
             V   K+SS A+R ++RE  +L    VLSLAAA++PP  N+SS VL+ PL N ++QM  
Sbjct: 115 S-VRLGKISSLAMRMIWREAKRLRSFPVLSLAAALVPPFQNLSSNVLSSPLQNPDVQMFG 173

Query: 180 SMGRSPCEVESHRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVG 239
           +M + P EVE   C  L   +L++ + AVEP+TGIEFP++LDN+  GE      SEVLVG
Sbjct: 174 AMDQVPKEVECQGCAFLPCLELNQAKPAVEPKTGIEFPLVLDNIFTGEKNYDFNSEVLVG 233

Query: 240 TGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDID 299
           TGSRT+ IVKIKSLKVYAF  YVHP S+CEKLGPKYASIS  ELN    FY+DLLREDI+
Sbjct: 234 TGSRTMTIVKIKSLKVYAFGVYVHPYSLCEKLGPKYASISADELNNHHDFYKDLLREDIN 293

Query: 300 MTVRLVINCNGMKVNAVKDVFEKSLRARLEKVN-HLAYGITLVF-----LQISLTHGTFL 353
           MTVRLV+NC GMK+N+VKD FEKSLRARL K N    +     F        S+  GT +
Sbjct: 294 MTVRLVVNCRGMKINSVKDAFEKSLRARLVKTNPSTDFSCLKTFGSYFTENFSIPLGTII 353

Query: 354 AYIRQIQTLIIT 365
            + R +   +IT
Sbjct: 354 EFKRTVDGRLIT 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554102|ref|XP_003545388.1| PREDICTED: uncharacterized protein LOC100789760 [Glycine max]

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 166/328 (50%), Positives = 215/328 (65%), Gaps = 12/328 (3%)

Query: 44  SLALQGAFNCISKFTGAFLFWFTSGSSSNLSRRIAGNQHGSKIGSYKSSAQVKQITSTGH 103
           S AL+ AF  +S+F+GA LFW +  SSSN++R + G+    + GS     QVK  ++T  
Sbjct: 45  SFALEEAFGHVSRFSGALLFWLSRASSSNVARSLRGSPP-LRFGS----VQVKAGSTTNV 99

Query: 104 NLTGFHLSSNSESEYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIPPLDNVSS 163
            + GF   S  +S ++  V   K+SS A+R ++RE  +L L  VLSLA A++PP  N+SS
Sbjct: 100 RVFGFPFGSKWKSSFSS-VRLGKISSLAMRMIWREAKRLSLFPVLSLAVALVPPFQNLSS 158

Query: 164 KVLAVPLDNAEIQMHESMGRSPCEVESHRCGALSFPDLSRTRHAVEPRTGIEFPMILDNV 223
            VLA PL N ++Q+  +M + P EVE   C  L   +LS+ + AVEP+TGIEFP++LDN+
Sbjct: 159 NVLASPLLNPDVQIFGAMDQVPKEVECQGCSFLPCLELSQAKPAVEPKTGIEFPLVLDNL 218

Query: 224 IDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAEL 283
             GE   +  SEVLVGTGSRT+ IVKIKSLKVYAF  YVHP S+CEKLGPKYASIS  EL
Sbjct: 219 FTGEKNYNLNSEVLVGTGSRTMTIVKIKSLKVYAFGVYVHPYSLCEKLGPKYASISADEL 278

Query: 284 NKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVN-HLAYGITLVF 342
           N    FY+DLLREDI+MTVRLV NC GMK+N+VKD FEKSLRARL K N    +     F
Sbjct: 279 NNHHDFYKDLLREDINMTVRLVANCRGMKINSVKDAFEKSLRARLVKANPSTDFSCLKTF 338

Query: 343 -----LQISLTHGTFLAYIRQIQTLIIT 365
                  IS+  GT + + R +   +IT
Sbjct: 339 GSYFTENISIPLGTVIEFKRTVDGRLIT 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822143|ref|XP_002878954.1| hypothetical protein ARALYDRAFT_481490 [Arabidopsis lyrata subsp. lyrata] gi|297324793|gb|EFH55213.1| hypothetical protein ARALYDRAFT_481490 [Arabidopsis lyrata subsp. lyrata]

 Score =  270 bits (690), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 157/315 (49%), Positives = 199/315 (63%), Gaps = 19/315 (6%)

Query: 19  PTEFFLARSLGDH-LFSQSSYPYVPGSLALQGAFNCISKFTGAFLFWFTSGSSSNLSRRI 77
           P      RS   H LFSQ    ++PGS A + AF+CISKFTGA L WF+ G   NL + +
Sbjct: 3   PNSVIPKRSFLHHELFSQL---HIPGSFAFE-AFSCISKFTGALLCWFSHG---NLQKEV 55

Query: 78  AGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSESEYACPVVFNKVSSSAIRRLFR 137
           + +Q G    S  SS  +        ++  FH  S   +    P  F  +S S I+    
Sbjct: 56  SKHQWGLTCKSSDSSKNL--FEHRNFSVFPFHYVSKDIT----PGFFGSISKSTIQHFVN 109

Query: 138 EGGKLHLSSVLSLAAAVIPPLDNVSSKVLAVPLDNAEIQMHESMGRSPCEVESHRCGALS 197
           E  +LH  SVLSLAAA+IP L+ +S+   A+PL + ++Q+ E+ G   C+V       LS
Sbjct: 110 EAERLHSCSVLSLAAALIPSLNVMSAYGHALPLGSNDVQLSENTGNRTCQVGHEEYSGLS 169

Query: 198 FPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYA 257
           F  L  TR  VEPRTGIEFPM+L      EN S S SEVLV TGSRT+KI++IKSLKVYA
Sbjct: 170 FHKLDWTRQTVEPRTGIEFPMLLK-----ENASRSNSEVLVATGSRTMKIIRIKSLKVYA 224

Query: 258 FAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVK 317
           F FYVHP SVC+KLG KYAS+  ++L+KC   Y+DLLREDI M+VRLV+N NG+K+N V+
Sbjct: 225 FGFYVHPSSVCQKLGRKYASVPASKLDKCDDLYKDLLREDIVMSVRLVVNYNGLKINTVR 284

Query: 318 DVFEKSLRARLEKVN 332
           DVFEKSLRARL K N
Sbjct: 285 DVFEKSLRARLVKAN 299

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29649081|gb|AAO86844.1| hypothetical protein [Arabidopsis thaliana]

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 161/329 (48%), Positives = 207/329 (62%), Gaps = 32/329 (9%)

Query: 14  DPY-ILPTEFFLARSLGDHLFSQSSYPYVPGSLALQGAFNCISKFTGAFLFWFTSGSSSN 72
           DP  +LP   FL       LFSQ    ++PGSLA + AF+CISKFTGA L WF+ G   N
Sbjct: 5   DPNSVLPKRSFLQH----ELFSQL---HIPGSLAFE-AFSCISKFTGALLCWFSHG---N 53

Query: 73  LSRRIAGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSESEYACPVVFNKVSSSAI 132
           L + ++ +Q G    S  S   V +  +   ++  FH  S   S    P  F  +S S I
Sbjct: 54  LQKEVSKHQWGLTCKSRDSLKHVFEHRNV--SVFPFHYVSKDIS----PGFFGNISKSTI 107

Query: 133 RRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAVPLDNAEIQMHESMGRSPC-EVESH 191
           +    E  +LH  S+LSLAAA+IP L+ +S+  LA+PL + ++++ E++    C E   H
Sbjct: 108 QHFVNEAERLHSCSLLSLAAAMIPSLNVMSANGLALPLGSNDVKLRENIEHRTCPENTEH 167

Query: 192 RC--------GALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSR 243
           R           LSF  L  TR +VEPRTGIEFPM+L      EN S S SEVLV TGSR
Sbjct: 168 RTCQVGCEEYSGLSFQKLDWTRQSVEPRTGIEFPMLLK-----ENASRSNSEVLVATGSR 222

Query: 244 TIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVR 303
           T+KI++IKSLKVYAF FYVHP SVC+KLG KYAS+  ++L+KC   Y+DLLREDI M+VR
Sbjct: 223 TMKIIRIKSLKVYAFGFYVHPSSVCQKLGRKYASVPASKLDKCDDLYKDLLREDIVMSVR 282

Query: 304 LVINCNGMKVNAVKDVFEKSLRARLEKVN 332
           LV+N NG+K+N V+DVFEKSLRARL K N
Sbjct: 283 LVVNYNGLKINTVRDVFEKSLRARLVKAN 311

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569342|ref|NP_180199.3| chalcone-flavanone isomerase-like protein [Arabidopsis thaliana] gi|61742610|gb|AAX55126.1| hypothetical protein At2g26310 [Arabidopsis thaliana] gi|330252727|gb|AEC07821.1| chalcone-flavanone isomerase-like protein [Arabidopsis thaliana]

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 161/329 (48%), Positives = 207/329 (62%), Gaps = 32/329 (9%)

Query: 14  DPY-ILPTEFFLARSLGDHLFSQSSYPYVPGSLALQGAFNCISKFTGAFLFWFTSGSSSN 72
           DP  +LP   FL       LFSQ    ++PGSLA + AF+CISKFTGA L WF+ G   N
Sbjct: 5   DPNSVLPKRSFLQH----ELFSQL---HIPGSLAFE-AFSCISKFTGALLCWFSHG---N 53

Query: 73  LSRRIAGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSESEYACPVVFNKVSSSAI 132
           L + ++ +Q G    S  S   V +  +   ++  FH  S   S    P  F  +S S I
Sbjct: 54  LQKEVSKHQWGLTCKSRDSLKHVFEHRNV--SVFPFHYVSKDIS----PGFFGNISKSTI 107

Query: 133 RRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAVPLDNAEIQMHESMGRSPC-EVESH 191
           +    E  +LH  S+LSLAAA+IP L+ +S+  LA+PL + ++++ E++    C E   H
Sbjct: 108 QHFVNEAERLHSCSLLSLAAAMIPSLNVMSANGLALPLGSNDVKLRENIEHRTCPENTEH 167

Query: 192 RC--------GALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSR 243
           R           LSF  L  TR +VEPRTGIEFPM+L      EN S S SEVLV TGSR
Sbjct: 168 RTCQVGCEEYSGLSFQKLDWTRQSVEPRTGIEFPMLLK-----ENASRSNSEVLVATGSR 222

Query: 244 TIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVR 303
           T+KI++IKSLKVYAF FYVHP SVC+KLG KYAS+  ++L+KC   Y+DLLREDI M+VR
Sbjct: 223 TMKIIRIKSLKVYAFGFYVHPSSVCQKLGRKYASVPASKLDKCDDLYKDLLREDIVMSVR 282

Query: 304 LVINCNGMKVNAVKDVFEKSLRARLEKVN 332
           LV+N NG+K+N V+DVFEKSLRARL K N
Sbjct: 283 LVVNYNGLKINTVRDVFEKSLRARLVKAN 311

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184478|ref|NP_001189606.1| chalcone-flavanone isomerase-like protein [Arabidopsis thaliana] gi|330252728|gb|AEC07822.1| chalcone-flavanone isomerase-like protein [Arabidopsis thaliana]

 Score =  264 bits (674), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 160/327 (48%), Positives = 206/327 (62%), Gaps = 32/327 (9%)

Query: 14  DP-YILPTEFFLARSLGDHLFSQSSYPYVPGSLALQGAFNCISKFTGAFLFWFTSGSSSN 72
           DP  +LP   FL       LFSQ    ++PGSLA + AF+CISKFTGA L WF+ G   N
Sbjct: 5   DPNSVLPKRSFLQH----ELFSQL---HIPGSLAFE-AFSCISKFTGALLCWFSHG---N 53

Query: 73  LSRRIAGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSESEYACPVVFNKVSSSAI 132
           L + ++ +Q G    S  S   V +  +   ++  FH  S   S    P  F  +S S I
Sbjct: 54  LQKEVSKHQWGLTCKSRDSLKHVFEHRNV--SVFPFHYVSKDIS----PGFFGNISKSTI 107

Query: 133 RRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAVPLDNAEIQMHESMGRSPC-EVESH 191
           +    E  +LH  S+LSLAAA+IP L+ +S+  LA+PL + ++++ E++    C E   H
Sbjct: 108 QHFVNEAERLHSCSLLSLAAAMIPSLNVMSANGLALPLGSNDVKLRENIEHRTCPENTEH 167

Query: 192 RC--------GALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSR 243
           R           LSF  L  TR +VEPRTGIEFPM+L      EN S S SEVLV TGSR
Sbjct: 168 RTCQVGCEEYSGLSFQKLDWTRQSVEPRTGIEFPMLLK-----ENASRSNSEVLVATGSR 222

Query: 244 TIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVR 303
           T+KI++IKSLKVYAF FYVHP SVC+KLG KYAS+  ++L+KC   Y+DLLREDI M+VR
Sbjct: 223 TMKIIRIKSLKVYAFGFYVHPSSVCQKLGRKYASVPASKLDKCDDLYKDLLREDIVMSVR 282

Query: 304 LVINCNGMKVNAVKDVFEKSLRARLEK 330
           LV+N NG+K+N V+DVFEKSLRARL K
Sbjct: 283 LVVNYNGLKINTVRDVFEKSLRARLVK 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:2057751	398	FAP2 "fatty-acid-binding prote	0.773	0.746	0.471	1.4e-62
TAIR|locus:2077229	279	FAP1 "fatty-acid-binding prote	0.338	0.465	0.309	1.5e-10

TAIR|locus:2057751 FAP2 "fatty-acid-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 155/329 (47%), Positives = 199/329 (60%)

Query:    14 DPY-ILPTEFFLARSLGDHLFSQSSYPYVPGSLALQGAFNCISKFTGAFLFWFTSGSSSN 72
             DP  +LP   FL   L    FSQ    ++PGSLA + AF+CISKFTGA L WF+ G   N
Sbjct:     5 DPNSVLPKRSFLQHEL----FSQL---HIPGSLAFE-AFSCISKFTGALLCWFSHG---N 53

Query:    73 LSRRIAGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSESEYACPVVFNKVSSSAI 132
             L + ++ +Q G    S  S   V +  +   ++  FH  S   S    P  F  +S S I
Sbjct:    54 LQKEVSKHQWGLTCKSRDSLKHVFEHRNV--SVFPFHYVSKDIS----PGFFGNISKSTI 107

Query:   133 RRLFREGGKLHXXXXXXXXXXXIPPLDNVSSKVLAVPLDNAEIQMHESMGRSPC-EVESH 191
             +    E  +LH           IP L+ +S+  LA+PL + ++++ E++    C E   H
Sbjct:   108 QHFVNEAERLHSCSLLSLAAAMIPSLNVMSANGLALPLGSNDVKLRENIEHRTCPENTEH 167

Query:   192 R-C-------GALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSR 243
             R C         LSF  L  TR +VEPRTGIEFPM+L      EN S S SEVLV TGSR
Sbjct:   168 RTCQVGCEEYSGLSFQKLDWTRQSVEPRTGIEFPMLLK-----ENASRSNSEVLVATGSR 222

Query:   244 TIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVR 303
             T+KI++IKSLKVYAF FYVHP SVC+KLG KYAS+  ++L+KC   Y+DLLREDI M+VR
Sbjct:   223 TMKIIRIKSLKVYAFGFYVHPSSVCQKLGRKYASVPASKLDKCDDLYKDLLREDIVMSVR 282

Query:   304 LVINCNGMKVNAVKDVFEKSLRARLEKVN 332
             LV+N NG+K+N V+DVFEKSLRARL K N
Sbjct:   283 LVVNYNGLKINTVRDVFEKSLRARLVKAN 311

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=IEA

GO:0005504 "fatty acid binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2077229 FAP1 "fatty-acid-binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 44/142 (30%), Positives = 75/142 (52%)

Query:   190 SHRCGALSFPDLSRTRHAV-EPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIV 248
             SHR     +  ++    +V EP+TG  FP  +     G+      S  L+G G R   ++
Sbjct:    60 SHRSSLSPWGSITLADESVVEPKTGFSFPASI-----GD------SRRLLGVGLRKKSLL 108

Query:   249 KIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINC 308
              +K++ VYAF  Y     V + +G KYA++  +E+     F +DL+  DI MT+RL I  
Sbjct:   109 GLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVY 168

Query:   309 NGMKVNAVKDVFEKSLRARLEK 330
               + + +V++ F++S+  RL+K
Sbjct:   169 GKLNIRSVRNAFQESVGNRLKK 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      384       373   0.00087  117 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  245 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.83u 0.13s 27.96t   Elapsed:  00:00:01
  Total cpu time:  27.83u 0.13s 27.96t   Elapsed:  00:00:01
  Start:  Mon May 20 23:20:37 2013   End:  Mon May 20 23:20:38 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005504 "fatty acid binding" evidence=IPI

GO:0006631 "fatty acid metabolic process" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
PLN03175	415	PLN03175, PLN03175, hypothetical protein; Provisio	1e-159
PLN03174	278	PLN03174, PLN03174, Chalcone-flavanone isomerase-r	5e-21
pfam02431	200	pfam02431, Chalcone, Chalcone-flavanone isomerase	7e-18

>gnl|CDD|178719 PLN03175, PLN03175, hypothetical protein; Provisional

 Score =  454 bits (1169), Expect = e-159
 Identities = 188/336 (55%), Positives = 229/336 (68%), Gaps = 19/336 (5%)

Query: 8   MDFNGGDPYILPTEFFLARSLGDHLFS-----------QSSYPYVPGSLALQGAFNCISK 56
            + +    Y+ P +  L+  LG  LFS           QS    +PGSLA Q AF+CISK
Sbjct: 1   SNLDHNSGYLFPIDSPLSHDLGLGLFSHVGTFVDNSLHQSRQICIPGSLAFQEAFSCISK 60

Query: 57  FTGAFLFWFTSGSSSNLSRRIAGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSES 116
           F GA LFWF+  S+  LSRR++G Q  S   S    AQVK       NL G    S S+ 
Sbjct: 61  FAGALLFWFSRASNPKLSRRLSGGQGSSSRASQSHIAQVKSCMQ---NLAGLPFGSQSKE 117

Query: 117 EYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIPPLDNVSSKVLAVPLDNAEIQ 176
           E+A  ++F K+SS  I RL+ E  +LH  +VLSLAAA++PPL+N+S KVLA+PL N ++Q
Sbjct: 118 EHAGQLLFAKISSFTIGRLWNEAERLHSCNVLSLAAALVPPLENISPKVLAMPLGNDDVQ 177

Query: 177 MHESMGRSPCEVESHRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEV 236
           + E   +  CEVE   C  LSFPDL+ TR AVEPRTGIEFPM+LD     EN SS TSEV
Sbjct: 178 VSEPTDQRYCEVEHSGCSGLSFPDLNWTRDAVEPRTGIEFPMLLD-----ENNSSLTSEV 232

Query: 237 LVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLRE 296
           LVGTGSRT+KI++IKSLKVYAF FYVHP SVCEKLGPKYAS+  +EL KC  FYEDLLRE
Sbjct: 233 LVGTGSRTMKIIRIKSLKVYAFGFYVHPNSVCEKLGPKYASVPASELKKCPDFYEDLLRE 292

Query: 297 DIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVN 332
           DI MTVRLV+N NG+K+N V+D FEKSLR RL+K+N
Sbjct: 293 DIVMTVRLVVNYNGLKINTVRDAFEKSLRNRLQKMN 328

Length = 415

>gnl|CDD|215613 PLN03174, PLN03174, Chalcone-flavanone isomerase-related; Provisional

 Score = 91.5 bits (227), Expect = 5e-21
 Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 12/137 (8%)

Query: 194 GALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSL 253
            ++S  D S     VE +TG+ FP  +             S  L+G G R   I+ +K++
Sbjct: 66  ASISLADPSPPS-VVESKTGVSFPAEIG-----------DSRRLLGVGLRKKSILGLKNI 113

Query: 254 KVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKV 313
            VYAF  Y     + + LG KY  +S +EL     F +DL+  DI MTVRL I    + +
Sbjct: 114 DVYAFGVYADDDDLKKLLGEKYGKLSASELKGNKEFIDDLMEADIKMTVRLQIVYGKLSI 173

Query: 314 NAVKDVFEKSLRARLEK 330
            +V+  FE+S+ +RL+K
Sbjct: 174 RSVRSAFEESVGSRLQK 190

Length = 278

>gnl|CDD|217029 pfam02431, Chalcone, Chalcone-flavanone isomerase

 Score = 80.7 bits (200), Expect = 7e-18
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 9/117 (7%)

Query: 216 FPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKY 275
           FP  +          S  S  L+G G R +  +  K +KVYA   Y+    V        
Sbjct: 1   FPPTI------SPPGSPKSLFLLGAGVRGVSFL-GKFIKVYAIGVYLAKSDVPSLASKWK 53

Query: 276 ASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVN 332
              S  EL +   F+ DLL   I+  +R+V   N +    ++D F +SL ARL+K  
Sbjct: 54  GK-SAEELEESEDFFRDLLDGGIEKFIRIVPIRN-LDGKHLRDGFVESLVARLKKAG 108

Chalcone-flavanone isomerase is a plant enzyme responsible for the isomerisation of chalcone to naringenin, a key step in the biosynthesis of flavonoids. Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
PLN03175	415	hypothetical protein; Provisional	100.0
PLN02559	230	chalcone--flavonone isomerase	100.0
PLN02804	206	chalcone isomerase	100.0
PLN03174	278	Chalcone-flavanone isomerase-related; Provisional	100.0
PLN02311	271	chalcone isomerase	100.0
PF02431	199	Chalcone: Chalcone-flavanone isomerase; InterPro:	100.0

>PLN03175 hypothetical protein; Provisional

Probab=100.00  E-value=3.7e-124  Score=933.10  Aligned_cols=368  Identities=53%  Similarity=0.824  Sum_probs=355.7

Q ss_pred             eecCCCCCccCCcchhhhccccCccccc-----------CcccccCcchhHhHHHHhHhhhhcceeeeeecCCCCccchh
Q 016727            8 MDFNGGDPYILPTEFFLARSLGDHLFSQ-----------SSYPYVPGSLALQGAFNCISKFTGAFLFWFTSGSSSNLSRR   76 (384)
Q Consensus         8 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~-----------~~~~~~~g~~~~~~af~~~~k~a~a~~~~~~~~~~~~~~~~   76 (384)
                      ||+||+++|.||+|++||||||++||+|           ||+||+|||+||||||+|++||||||||||||+|+||++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~   80 (415)
T PLN03175          1 SNLDHNSGYLFPIDSPLSHDLGLGLFSHVGTFVDNSLHQSRQICIPGSLAFQEAFSCISKFAGALLFWFSRASNPKLSRR   80 (415)
T ss_pred             CCCCCCCccccCCCcccccccccchhhcccccccCcccccceeecCccHHHHHHHHHHHHhhhheEEEeccCCCHHHHHH
Confidence            7899999999999999999999999998           49999999999999999999999999999999999999999


Q ss_pred             hcccCCCCccccccccccccccccccccccccccccCCCCccccchhhhhhhHHHHHHHHhhhcccccchhhhhhhhccC
Q 016727           77 IAGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSESEYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIP  156 (384)
Q Consensus        77 ~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~la~a~~p  156 (384)
                      ++++++   ++|++|++|++||++|||||+||||||.+|+||++|++|++|||+||||||||+||+|||||||||||+||
T Consensus        81 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~a~~p  157 (415)
T PLN03175         81 LSGGQG---SSSRASQSHIAQVKSCMQNLAGLPFGSQSKEEHAGQLLFAKISSFTIGRLWNEAERLHSCNVLSLAAALVP  157 (415)
T ss_pred             HhcCCC---CCCchHHHhHHHhhhHhhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHhhccccHHHHHhhhCC
Confidence            999999   89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcceeeeeccCccccccccCCCCCccccCccCCCCCCCCCCCCcceecCCCCcccCceecccccCCCCCCCCcce
Q 016727          157 PLDNVSSKVLAVPLDNAEIQMHESMGRSPCEVESHRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEV  236 (384)
Q Consensus       157 p~~~~s~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~  236 (384)
                      |||||||||||||++|+|+++||++||+|||++|++|+++++|++++|+++|||+||++||+.++     ++++++++++
T Consensus       158 ~~~~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vEPkTgv~FP~~l~-----~~p~s~~sl~  232 (415)
T PLN03175        158 PLENISPKVLAMPLGNDDVQVSEPTDQRYCEVEHSGCSGLSFPDLNWTRDAVEPRTGIEFPMLLD-----ENNSSLTSEV  232 (415)
T ss_pred             CccccChhheeeeccCCCcccccccCCCcccccCcCCCccCcCcccccccccccCCCCcCCcccc-----CCCCCCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999994     4788889999


Q ss_pred             EEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhCCccCCCChhhhcccchhHHHHhccCcceEEEEEEEeccccchhH
Q 016727          237 LVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAV  316 (384)
Q Consensus       237 LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~~Kwkgksa~EL~~~~dFf~dLl~~~~ektvRLVivyskVs~n~v  316 (384)
                      |+|+|+|+|+|+|+|+|||||||||+|+++++.+|++||||||++||+++++||+||+++|++|+||+++++++++++++
T Consensus       233 L~G~GvR~~eI~~~k~IKfyAiGVYle~~~v~~~L~~KwkGKsa~EL~~s~eFf~DIItap~~m~IRLVii~~gI~~sk~  312 (415)
T PLN03175        233 LVGTGSRTMKIIRIKSLKVYAFGFYVHPNSVCEKLGPKYASVPASELKKCPDFYEDLLREDIVMTVRLVVNYNGLKINTV  312 (415)
T ss_pred             eeecccceeEEEeeceeEEEEEEEEeccchHHHHHhhhhCCCcHHHHccCHHHHHHHHcCCccEEEEEEEecCCccHHHH
Confidence            99999999999988999999999999999888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCcc-c---ccc-ccccc-CccCCCCCeEEEEEccCCeEE--------EEEecchhhHHHHHHhhc
Q 016727          317 KDVFEKSLRARLEKVNHL-A---YGI-TLVFL-QISLTHGTFLAYIRQIQTLII--------TAWKVLVLTSAKIFHYLW  382 (384)
Q Consensus       317 rdAfeeSLg~RLkk~~~~-e---Le~-ks~Fk-~~~lpkGs~I~ft~sp~GkLv--------~~IEsk~L~~Alfd~Yl~  382 (384)
                      ++||||++++||++.+++ |   |++ .++|+ +++||||++|+|+++|+|.++        ++|||+.||+|+|+.|+|
T Consensus       313 ~~Afees~g~RLkkt~gdae~eAIeKF~s~F~~di~fpkGssI~Ft~sP~ggLtisInG~~vgvIEnk~L~eALfdiyLG  392 (415)
T PLN03175        313 RDAFEKSLRNRLQKMNPNTDYNCLKTFGSFFTEDIPIPAGTKIDFRRTSDGQLITEIGGNQIGAVRSKDLCRAFFDMYIG  392 (415)
T ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcccccCCCCEEEEEEcCCCceEEEECCeeeeEeccHHHHHHHHHHHcC
Confidence            999999999999988743 2   787 99995 999999999999999988765        589999999999999999


Q ss_pred             c
Q 016727          383 E  383 (384)
Q Consensus       383 ~  383 (384)
                      |
T Consensus       393 d  393 (415)
T PLN03175        393 D  393 (415)
T ss_pred             C
Confidence            7

>PLN02559 chalcone--flavonone isomerase

Probab=100.00  E-value=1.7e-46  Score=352.67  Aligned_cols=171  Identities=18%  Similarity=0.237  Sum_probs=151.5

Q ss_pred             CCCCcceecCCCCcccCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhCCccCCCCh
Q 016727          201 LSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISV  280 (384)
Q Consensus       201 ~~~t~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~~Kwkgksa  280 (384)
                      ++.+.++||   ||+||+.+      ++|++.++++|+|+|+|+|+|+| |+|||||||+|||++++.. |++|||||++
T Consensus         2 ~~~~~v~ve---~i~FP~~v------~~p~s~~~l~L~GaG~Rg~eI~~-~~vKftAiGvYle~~av~~-L~~KWKGKsa   70 (230)
T PLN02559          2 PAVTEVQVE---GVTFPPSV------KPPGSSNPLFLGGAGVRGLEIQG-KFIKFTAIGVYLEGNAVPS-LAKKWKGKTA   70 (230)
T ss_pred             CccceEeEc---ceecCCcc------cCCCCCCceEEEeccccceEEee-EEEEEEEEEEEechhHHHH-HHHhhCCcCH
Confidence            467888999   99999999      68888899999999999999998 8999999999999998866 8899999999


Q ss_pred             hhhcccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhc---Cccc---ccc-cccccCccCCCCCeE
Q 016727          281 AELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKV---NHLA---YGI-TLVFLQISLTHGTFL  353 (384)
Q Consensus       281 ~EL~~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~---~~~e---Le~-ks~Fk~~~lpkGs~I  353 (384)
                      +||.++++||+||+++|+||++|++|++ .+++.++++++++...+|+|..   +++|   |++ .++|++++||||++|
T Consensus        71 ~EL~~~~~Ff~div~~p~EK~~rV~~I~-~l~G~qy~~kv~e~~~a~~ks~g~y~daE~~aLekF~~~Fk~~~fp~Gs~I  149 (230)
T PLN02559         71 EELADSVAFFRDVVTGDFEKFTRVTMIL-PLTGEQYSEKVTENCVAIWKSLGIYTDAEAKAVEKFKEAFKEETFPPGSSI  149 (230)
T ss_pred             HHHhcCHHHHHHHHcCcchhhEEEEEEE-eccccchHHHHhHHHHHHHHhcCCcchhHHHHHHHHHHHhcCCCCCCCCEE
Confidence            9999999999999999999999999975 3556666555555555555544   4443   888 999999999999999


Q ss_pred             EEEEccCCeEE--------------EEEecchhhHHHHHHhhcc
Q 016727          354 AYIRQIQTLII--------------TAWKVLVLTSAKIFHYLWE  383 (384)
Q Consensus       354 ~ft~sp~GkLv--------------~~IEsk~L~~Alfd~Yl~~  383 (384)
                      +|||+|+|+|+              ++|||+.||+|+||.|+|+
T Consensus       150 ~ft~sp~g~L~isfs~dg~ipe~~~~~Ienk~l~eAv~e~~IG~  193 (230)
T PLN02559        150 LFTHSPTGSLTVAFSKDSSVPEVGNAVIENKLLCEAVLESIIGK  193 (230)
T ss_pred             EEEECCCCcEEEEEecCCCCCccceEEEechHHHHHHHHHHccC
Confidence            99999999987              4899999999999999997

>PLN02804 chalcone isomerase

Probab=100.00  E-value=7e-44  Score=331.65  Aligned_cols=164  Identities=21%  Similarity=0.274  Sum_probs=150.0

Q ss_pred             cceecCCCCcccCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhCCccCCCChhhhc
Q 016727          205 RHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELN  284 (384)
Q Consensus       205 ~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~~Kwkgksa~EL~  284 (384)
                      .++||   |++||+.+      +  +++++++|+|+|+|+|+|+| ++|||||||+|+|++ ++.+| .||+|||++||.
T Consensus         3 ~~~v~---~v~FP~~i------~--~ss~~l~L~G~G~R~~~I~~-~~iK~yAiGvYle~~-~~~~L-~kwkgk~a~EL~   68 (206)
T PLN02804          3 MVMVE---DIPFPPQI------T--TSSKPLSLLGHGITDIEIHF-LQIKFTAIGVYLEPS-VKGHL-QSWKGKPGSELA   68 (206)
T ss_pred             eEEec---CcCCCcee------e--cCCCcceEEeecccceEEEe-EEEEEEEEEEEecHH-HHHHH-HHhcCCCHHHHh
Confidence            46789   99999999      3  45578999999999999999 599999999999995 55558 699999999999


Q ss_pred             ccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhcC---ccc---ccc-cccccCccCCCCCeEEEEE
Q 016727          285 KCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVN---HLA---YGI-TLVFLQISLTHGTFLAYIR  357 (384)
Q Consensus       285 ~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~~---~~e---Le~-ks~Fk~~~lpkGs~I~ft~  357 (384)
                      ++++||+||+++|+||++||||++ .+++.+|++++++++++||++.+   ++|   |++ .++|++++||||++|+|+|
T Consensus        69 ~~~~Ff~dlv~~p~ek~~Ri~~i~-~l~g~qy~~~~ee~~~~rlk~~~~y~d~e~~aL~kf~~~Fk~~~fp~Gs~I~ft~  147 (206)
T PLN02804         69 EDDDFFQALIQAPVEKLIRIVVIK-EIKGSQYGVQLESSVRDRLAEDDKYEEEEEEALEKVVEFFQSKYFKKNSIITYHF  147 (206)
T ss_pred             cCHHHHHHHHcCChhhEEEEEEEe-cCcCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhCCCcCCCCCEEEEEe
Confidence            999999999999999999999997 68999999999999999999988   323   888 9999999999999999999


Q ss_pred             cc-CCeEE------------EEEecchhhHHHHHHhh-cc
Q 016727          358 QI-QTLII------------TAWKVLVLTSAKIFHYL-WE  383 (384)
Q Consensus       358 sp-~GkLv------------~~IEsk~L~~Alfd~Yl-~~  383 (384)
                      ++ +|.+.            ++|||+.||+|++|.|+ |+
T Consensus       148 ~~~~g~l~Isfs~dg~e~~~~~Ienk~l~~avl~~yi~G~  187 (206)
T PLN02804        148 PATSGIVEISFSTEGKEESKLTVENANVVEMIQKWYLGGE  187 (206)
T ss_pred             cCCCCeEEEEEecCCcccceeEEecHHHHHHHHHHHhcCC
Confidence            98 88875            47999999999999999 86

>PLN03174 Chalcone-flavanone isomerase-related; Provisional

Probab=100.00  E-value=1.3e-42  Score=335.33  Aligned_cols=168  Identities=30%  Similarity=0.506  Sum_probs=153.6

Q ss_pred             cceecCCCCcccCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhCCccCCCChhhhc
Q 016727          205 RHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELN  284 (384)
Q Consensus       205 ~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~~Kwkgksa~EL~  284 (384)
                      ..+|||+||++||++++      +     +..|+|+|+|+|+|+|+|+|||||||+|+|+++++++|++||+|++++||+
T Consensus        76 ~~~vEp~tGv~FP~~l~------~-----~~~LLGaGvR~k~i~glk~IKvYAiGlYl~~~~v~~~L~~k~kgks~~El~  144 (278)
T PLN03174         76 PSVVESKTGVSFPAEIG------D-----SRRLLGVGLRKKSILGLKNIDVYAFGVYADDDDLKKLLGEKYGKLSASELK  144 (278)
T ss_pred             CceeccCCCCcCCCccc------C-----CCcceeeeeeeEEEeccceEEEEEEEEEechhHhHHHhhhhhcCCChhhhh
Confidence            35899999999999994      2     123779999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhcCccc----ccc-cccccC-ccCCCCCeEEEEEc
Q 016727          285 KCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNHLA----YGI-TLVFLQ-ISLTHGTFLAYIRQ  358 (384)
Q Consensus       285 ~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~~~~e----Le~-ks~Fk~-~~lpkGs~I~ft~s  358 (384)
                      ++.+||+||+++|++|++||+|+|++++.+++|+||++++++||+++++++    |++ .++|++ .+||||++|+|+++
T Consensus       145 ~s~~f~~dil~~~~ek~iRL~iiy~~v~~~~v~~A~~esv~~rl~~~~~~e~~e~IekF~~~F~~~~~l~kGdvI~~~~~  224 (278)
T PLN03174        145 GNKEFIDDLMEADIKMTVRLQIVYGKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQSFTSLFKDEYKIPKGSVIDLSRE  224 (278)
T ss_pred             cCHHHHHHHHcCCCceEEEEEEEeccccHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHhccccCCCCCEEEEEEc
Confidence            999999999999999999999999999999999999999999999999643    677 999995 56999999999999


Q ss_pred             cCCeE--------EEEEecchhhHHHHHHhhcc
Q 016727          359 IQTLI--------ITAWKVLVLTSAKIFHYLWE  383 (384)
Q Consensus       359 p~GkL--------v~~IEsk~L~~Alfd~Yl~~  383 (384)
                      |++.+        .++|+|+.||+|||+.||||
T Consensus       225 Pg~gl~vsi~Gk~~g~Ie~~~f~~ALf~iyLGd  257 (278)
T PLN03174        225 PGHVLRTTIDGKEVGSIQSKLLCRSILDLYIGE  257 (278)
T ss_pred             CCCeEEEEECCEEeeEECCHHHHHHHHHHHcCC
Confidence            76554        56999999999999999997

>PLN02311 chalcone isomerase

Probab=100.00  E-value=2.3e-41  Score=325.72  Aligned_cols=180  Identities=19%  Similarity=0.254  Sum_probs=163.1

Q ss_pred             ccCCCCCCCCCCCCcceecCCCCcccCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhh
Q 016727          191 HRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEK  270 (384)
Q Consensus       191 ~~~~~~~~p~~~~t~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~  270 (384)
                      ..|+|+++|+..   .++||+|||+||+.+      +.+++.++++|.|+|+|+|.|.+ ++|||||+|+|+|+++++. 
T Consensus        55 ~~~~~~~~~~~~---~~~ep~TgV~Fp~~v------~~~~~s~~L~LnGaGvR~K~I~~-~~vKVYA~GLYL~~~~~~~-  123 (271)
T PLN02311         55 VKSAAFSVGSAE---YAEETATSVKFQRSL------TLPGCSSPLSLLGTGYREKVFAI-IGVKVYAAGLYVNPSILSG-  123 (271)
T ss_pred             eeccccccCccc---ceecCCcCCcCCccc------cCCCCCCceeEeeeEEeeEEEee-eeEEEEEEEEEechhhhhh-
Confidence            578999998765   899999999999999      56777789999999999999987 7999999999999998766 


Q ss_pred             hCCccCCCChhhhcccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhcCccc---ccc-cccccCcc
Q 016727          271 LGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNHLA---YGI-TLVFLQIS  346 (384)
Q Consensus       271 L~~Kwkgksa~EL~~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~~~~e---Le~-ks~Fk~~~  346 (384)
                      |+ ||+|++++||.++.+||+||+++|++|++||+|.+ .++..++++||+|++++|+++.++++   |++ .++|++++
T Consensus       124 L~-kwkgk~a~eL~~~~~ff~dIi~a~~eK~irI~~iR-~v~g~~~~~A~~eg~~~rlk~~~~~~~~aLekF~~~F~~~~  201 (271)
T PLN02311        124 LS-AWKGRSADEIQRDSSLFSSIFQAPAEKSLQIVLVR-DVDGKTFWDALDEAISPRIKAPSPDDTSALSTFRSIFQNRS  201 (271)
T ss_pred             Hh-hhcCCCHHHHhcchHHHHHHhcCCcceEEEEEEEe-cCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCC
Confidence            87 99999999999999999999999999999999986 69999999999999999998776433   777 99999999


Q ss_pred             CCCCCeEEEEEccCCeE-------------EEEEecchhhHHHHHHhhcc
Q 016727          347 LTHGTFLAYIRQIQTLI-------------ITAWKVLVLTSAKIFHYLWE  383 (384)
Q Consensus       347 lpkGs~I~ft~sp~GkL-------------v~~IEsk~L~~Alfd~Yl~~  383 (384)
                      ||||++|+|+|.|+|.+             .++|+|+.||+|||+.|||+
T Consensus       202 l~kGd~I~~~~~p~~~~~v~~s~~g~~~~~~g~Ies~~f~~ALf~i~LGd  251 (271)
T PLN02311        202 LNKGTVIFLTWINPSKMLVCISSEGLPSSVDATIESGNVTSALFDVFFGD  251 (271)
T ss_pred             CCCCCEEEEEEeCCCceEEEEecCCcccceeEEECCHHHHHHHHHHhcCC
Confidence            99999999999986543             35799999999999999997

>PF02431 Chalcone: Chalcone-flavanone isomerase; InterPro: IPR003466 Chalcone isomerase (5

Probab=100.00  E-value=2.1e-33  Score=256.20  Aligned_cols=157  Identities=25%  Similarity=0.376  Sum_probs=134.5

Q ss_pred             cCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhCCccCCCChh-hhcccchhHHHHh
Q 016727          216 FPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVA-ELNKCGGFYEDLL  294 (384)
Q Consensus       216 FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~~Kwkgksa~-EL~~~~dFf~dLl  294 (384)
                      ||..+      +.|.+.++++|+|+|+|+++|+   +|||||+|+|+|+++++.+ ..+|.++.++ ++.++.+||++|+
T Consensus         1 FP~~i------~~p~~~~~l~L~G~GvR~~~~~---~ikVYavG~Yv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll   70 (199)
T PF02431_consen    1 FPKKI------TSPTSSEELSLLGAGVRTVSFL---NIKVYAVGLYVDDSDAKKL-LKKWKGKSASDDLEKSEDFFDDLL   70 (199)
T ss_dssp             EESEE------E-TTTSSEEEEEEEEEEEEEET---EEEEEEEEEEEECCHHHHH-HHHHTTT-HHHHHHT-HHHHHHHH
T ss_pred             CCCcc------cCCCCCCCeEEEEEEEeeEEEE---EEEEEEEEEEEChhHhhhH-HHhhhcccCcccccccHHHHHHHh
Confidence            89999      4566678999999999999998   6899999999999999984 4689999987 9999999999999


Q ss_pred             ccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhcCc--c---c-ccc-cccccCc-cCCCCCeEEEEEccCCeEE--
Q 016727          295 REDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNH--L---A-YGI-TLVFLQI-SLTHGTFLAYIRQIQTLII--  364 (384)
Q Consensus       295 ~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~~~--~---e-Le~-ks~Fk~~-~lpkGs~I~ft~sp~GkLv--  364 (384)
                      +++++|++||+++|+ ++.+|+||||.|++.+|+++.+.  +   + +++ +++|+.. ++|||+.|+|+|+|+|.+.  
T Consensus        71 ~~~~~k~iri~~~R~-~~~~~l~d~~~~~i~~r~~~~~~~~~~~~~~l~~f~~~F~~~g~~~kG~~i~l~~~~~g~l~v~  149 (199)
T PF02431_consen   71 DSPVEKAIRIVPVRN-VDGKHLRDAFIESIRPRLKAAGTEEEALEEALDEFKSLFKSKGSVPKGDVITLTWSPDGSLTVS  149 (199)
T ss_dssp             HSSS-EEEEEEESSS-EEHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHTTB-EE-TT-EEEEEEETTTEEEEE
T ss_pred             cCCccEEEEEEEEec-CCHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHhcccccccCCCEEEEEECCCCcEEEE
Confidence            999999999999986 99999999999999999988752  2   1 666 9999865 9999999999999988654  


Q ss_pred             ------------EEEecchhhHHHHHHhh-cc
Q 016727          365 ------------TAWKVLVLTSAKIFHYL-WE  383 (384)
Q Consensus       365 ------------~~IEsk~L~~Alfd~Yl-~~  383 (384)
                                  ++|+|+.||+|+|+.|| |+
T Consensus       150 ~~~~~~~~~~~~g~I~~~~~~~al~~~yL~G~  181 (199)
T PF02431_consen  150 YNGQGKIPGKELGTIKSPRFARALFDIYLSGD  181 (199)
T ss_dssp             EESSSS--SSECEEEE-HHHHHHHHHHHH-ST
T ss_pred             EecCCCCCccceeEEcCHHHHHHHHHHHcCCC
Confidence                        47889999999999999 86

5.1.6 from EC) also known as chalcone-flavanone isomerase, is a plant enzyme responsible for the isomerisation of chalcone to naringenin a key step in the biosynthesis of flavonoids. The Petunia hybrida (Petunia) genome contains two genes coding for very similar enzymes, ChiA and ChiB, but only the first seems to encode a functional chalcone isomerase. Chalcone isomerase has a core 2-layer alpha/beta structure consisting of beta(3)-alpha(2)-beta-alpha(2)-beta(3) []. This entry represents a subgroup of Chalcone isomerase.; GO: 0016872 intramolecular lyase activity, 0042398 cellular modified amino acid biosynthetic process; PDB: 1JX0_B 1JEP_A 1EYP_B 1JX1_B 1EYQ_B 1FM8_A 1FM7_A 4DOL_A 4DOI_A 4DOK_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	384
4doo_A	205	Crystal Structure Of Arabidopsis Thaliana Fatty-Aci		2e-13

>pdb|4DOO|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid Binding Protein At3g63170 (Atfap1) Length = 205

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Query: 208 VEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSV 267
           VEP+TG  FP            S   S  L+G G R   ++ +K++ VYAF  Y     V
Sbjct: 6   VEPKTGFSFPA-----------SIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDV 54
Query: 268 CEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRAR 327
            + +G KYA++  +E+     F +DL+  DI MT+RL I    + + +V++ F++S+  R
Sbjct: 55  KKLVGDKYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNR 114
Query: 328 LEK 330
           L+K
Sbjct: 115 LKK 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
4doo_A	205	Chalcone-flavanone isomerase family protein; chalc	1e-28
4doi_A	246	Chalcone--flavonone isomerase 1; chalcone-flavanon	2e-23
1eyq_A	222	Chalcone-flavonone isomerase 1; chalcone isomerase	7e-23
4dok_A	208	Similarity to chalcone-flavonone isomerase; chalco	2e-20
4dol_A	217	AT1G53520, 94270-95700, chalcon; chalcone-isomeras	5e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana} Length = 205

 Score =  110 bits (275), Expect = 1e-28
 Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 11/127 (8%)

Query: 206 HAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPR 265
             VEP+TG  FP  + +           S  L+G G R   ++ +K++ VYAF  Y    
Sbjct: 4   SVVEPKTGFSFPASIGD-----------SRRLLGVGLRKKSLLGLKNIDVYAFGVYADCD 52

Query: 266 SVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLR 325
            V + +G KYA++  +E+     F +DL+  DI MT+RL I    + + +V++ F++S+ 
Sbjct: 53  DVKKLVGDKYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVG 112

Query: 326 ARLEKVN 332
            RL+K  
Sbjct: 113 NRLKKFG 119

>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana} Length = 246

 Score = 97.2 bits (241), Expect = 2e-23
 Identities = 22/145 (15%), Positives = 55/145 (37%), Gaps = 12/145 (8%)

Query: 188 VESHRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKI 247
           + S    A   P  + T+  V+    + F   +      ++ +SS    L G G R + I
Sbjct: 1   MSSSNACASPSPFPAVTKLHVD---SVTFVPSV------KSPASSNPLFLGGAGVRGLDI 51

Query: 248 VKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVIN 307
            + K +       Y+   +V   L  K+   +  EL +   F+ +++    +  +++ + 
Sbjct: 52  -QGKFVIFTVIGVYLEGNAVPS-LSVKWKGKTTEELTESIPFFREIVTGAFEKFIKVTM- 108

Query: 308 CNGMKVNAVKDVFEKSLRARLEKVN 332
              +      +   ++  A  +++ 
Sbjct: 109 KLPLTGQQYSEKVTENCVAIWKQLG 133

>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A* Length = 222

 Score = 94.8 bits (235), Expect = 7e-23
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 9/121 (7%)

Query: 212 TGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKL 271
             +E+P ++ +        +  S  L G G R + I +   +K  A   Y+   +V   L
Sbjct: 11  ENLEYPAVVTSP------VTGKSYFLGGAGERGLTI-EGNFIKFTAIGVYLEDIAVAS-L 62

Query: 272 GPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKV 331
             K+   S  EL +   FY D++    +  +R       +          ++  A L+ V
Sbjct: 63  AAKWKGKSSEELLETLDFYRDIISGPFEKLIRGSK-IRELSGPEYSRKVMENCVAHLKSV 121

Query: 332 N 332
            
Sbjct: 122 G 122

>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana} Length = 208

 Score = 87.8 bits (217), Expect = 2e-20
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 12/121 (9%)

Query: 212 TGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKL 271
             + FP  +          +S    L+G G   I+I     +K  A   Y+ P  V +  
Sbjct: 8   HEVPFPPQI---------ITSKPLSLLGQGITDIEI-HFLQVKFTAIGVYLDPSDV-KTH 56

Query: 272 GPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKV 331
              +   +  EL     F++ L   +++  +R+V+    +K        E ++R RL + 
Sbjct: 57  LDNWKGKTGKELAGDDDFFDALASAEMEKVIRVVV-IKEIKGAQYGVQLENTVRDRLAEE 115

Query: 332 N 332
           +
Sbjct: 116 D 116

>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana} Length = 217

 Score = 83.9 bits (207), Expect = 5e-19
 Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 10/151 (6%)

Query: 195 ALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLK 254
           + +    +   +A E  T ++F   +           S+   L+GTG R  K   I  +K
Sbjct: 2   SAASSVGNAEDYAEETATSVKFKRSV------TLPGCSSPLSLLGTGFRE-KKFAIIGVK 54

Query: 255 VYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVN 314
           VYA  +YV+   +       +   S  E+ +    +  + +   + ++++V+    +   
Sbjct: 55  VYAAGYYVNESILSGL--SAWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVL-VRDVDGK 111

Query: 315 AVKDVFEKSLRARLEKVNHLAYGITLVFLQI 345
              D  ++++  R++  +         F  I
Sbjct: 112 TFWDALDEAISPRIKSPSSEDTTALSTFCCI 142

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 54/411 (13%), Positives = 120/411 (29%), Gaps = 126/411 (30%)

Query: 90  KSSAQVKQITSTGHNLT-GFHLSSNSESEYACPVVFNKVSSSAIRRLFREG---GKLHLS 145
           K    V++       +   F L S  ++E   P +  ++      RL+ +     K ++S
Sbjct: 74  KQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 146 S---VLSLAAAV--IPPLDNV-------SSK-VLAVP-LDNAEIQMHE-------SMGRS 184
                L L  A+  + P  NV       S K  +A+    + ++Q          ++   
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 185 PCEVE-----SHRCGALSFPDLSRTRHAVEPRTGIE--------------FP---MILDN 222
                           +     SR+ H+   +  I               +    ++L N
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 223 VIDGE--NYSSSTSEVLVGT----------GSRTIKIVKIKSLKVYA-------FAFYVH 263
           V + +  N  + + ++L+ T           + T  I                    Y+ 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 264 ------PRSVCEKLGP--------------------KY-----------ASISV---AEL 283
                 PR V     P                    K+           +S++V   AE 
Sbjct: 313 CRPQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 284 NKCGGFYEDL--LREDIDMTVR-LVINCNGMKVNAVKDVFEKSLRARL--EKVNHLAYGI 338
            K    ++ L        +    L +    +  + V  V  K  +  L  ++       I
Sbjct: 372 RKM---FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 339 TLVFLQISLT-------HGTFLAYIRQIQTLIITAWKVLVLTSAK-IFHYL 381
             ++L++ +        H + + +    +T    +  ++     +  + ++
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTF--DSDDLIPPYLDQYFYSHI 477

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
4doi_A	246	Chalcone--flavonone isomerase 1; chalcone-flavanon	100.0
4doo_A	205	Chalcone-flavanone isomerase family protein; chalc	100.0
4dok_A	208	Similarity to chalcone-flavonone isomerase; chalco	100.0
1eyq_A	222	Chalcone-flavonone isomerase 1; chalcone isomerase	100.0
4dol_A	217	AT1G53520, 94270-95700, chalcon; chalcone-isomeras	100.0

>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}

Probab=100.00  E-value=1.9e-42  Score=328.00  Aligned_cols=179  Identities=14%  Similarity=0.187  Sum_probs=156.1

Q ss_pred             cCCCCCCCCCCCCcceecCCCCcccCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhh
Q 016727          192 RCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKL  271 (384)
Q Consensus       192 ~~~~~~~p~~~~t~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L  271 (384)
                      .|++++.| ++.+.+.||   ||+||+.+      ++|++.++++|+|+|+|+|+|++ ++|||||||+|+|++++. +|
T Consensus         6 ~~~~~~~~-~~~~~v~V~---gV~FP~~v------~~p~~~~~L~L~GaGvR~k~I~~-~~vKvYAiGlYl~~~~~~-~L   73 (246)
T 4doi_A            6 ACASPSPF-PAVTKLHVD---SVTFVPSV------KSPASSNPLFLGGAGVRGLDIQG-KFVIFTVIGVYLEGNAVP-SL   73 (246)
T ss_dssp             ----------CCCCEEET---TEEECSEE------ECTTTCCEEEEEEEEEEEEEETT-EEEEEEEEEEEECTTHHH-HH
T ss_pred             ccccCCCC-CccceeEEC---ceECCCee------ccCCCCCceeEecceeeceeeee-eEEEEEEEEEEechhHHH-Hh
Confidence            45555554 588899999   99999999      46777889999999999999998 699999999999998654 59


Q ss_pred             CCccCCCChhhhcccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhcC---ccc---ccc-cccccC
Q 016727          272 GPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVN---HLA---YGI-TLVFLQ  344 (384)
Q Consensus       272 ~~Kwkgksa~EL~~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~~---~~e---Le~-ks~Fk~  344 (384)
                      ++||+|++++||.++.+||+||+++|++|++||+|+| .++..++++||++++++||++.+   ++|   |++ .++|++
T Consensus        74 ~~kwkgk~~~eL~~~~~ff~~il~~p~eK~lrl~~ir-~l~g~~~~~al~e~l~~rlk~~g~~~~~e~~aL~~F~~~F~~  152 (246)
T 4doi_A           74 SVKWKGKTTEELTESIPFFREIVTGAFEKFIKVTMKL-PLTGQQYSEKVTENCVAIWKQLGLYTDCEAKAVEKFLEIFKE  152 (246)
T ss_dssp             HHHHTTCCHHHHHHCHHHHHHHHHCSSCEEEEEEESS-CEEHHHHHHHHTTTHHHHHHHHTCCCHHHHHHHHHHHHHHTT
T ss_pred             hhhhcCCCHHHhcccHHHHHHHHcCCcceEEEEEEEe-cCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999997 69999999999999999998854   333   777 999999


Q ss_pred             ccCCCCCeEEEEEccCCeEEE--------------EEecchhhHHHHHHhhcc
Q 016727          345 ISLTHGTFLAYIRQIQTLIIT--------------AWKVLVLTSAKIFHYLWE  383 (384)
Q Consensus       345 ~~lpkGs~I~ft~sp~GkLv~--------------~IEsk~L~~Alfd~Yl~~  383 (384)
                      ++||||++|+|+|+|+|.+++              +|+|+.||+|||+.|||+
T Consensus       153 ~~l~kGs~I~~~~~p~g~l~i~~s~~G~~p~~~~~~I~s~~l~~All~~ylG~  205 (246)
T 4doi_A          153 ETFPPGSSILFALSPTGSLTVAFSKDDSIPETGIAVIENKLLAEAVLESIIGK  205 (246)
T ss_dssp             CEECTTCEEEEEECTTSEEEEEEESSSCCCSSCSEEEECHHHHHHHHHHHHST
T ss_pred             CcCCCCCEEEEEEeCCCcEEEEEecCCccccccccccCCHHHHHHHHHHhcCC
Confidence            999999999999999987643              689999999999999997

>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}

Probab=100.00  E-value=1.6e-41  Score=310.94  Aligned_cols=168  Identities=27%  Similarity=0.479  Sum_probs=155.5

Q ss_pred             cceecCCCCcccCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhCCccCCCChhhhc
Q 016727          205 RHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELN  284 (384)
Q Consensus       205 ~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~~Kwkgksa~EL~  284 (384)
                      ..+|||+||++||+.++           .+++|+|+|+|+++|+|+|+|||||+|+|+++++++.+|+.||+|++++||+
T Consensus         3 ~~~vep~tgv~FP~~~~-----------~~~~L~G~GvR~~~i~~~~~ikvYa~GlYl~~~~~~~~L~~k~~~~~~~el~   71 (205)
T 4doo_A            3 ESVVEPKTGFSFPASIG-----------DSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIR   71 (205)
T ss_dssp             CCEECTTTCCEECSEET-----------TTEEEEEEEEEEEECSTTCEEEEEEEEEEEEHHHHHHHHHHHSTTCCHHHHH
T ss_pred             CccccCCcCCcCCCccC-----------CCceEEEeeeeEEEEeeccceEEEEEEEEeCHHHHHHHHHhhhcCCCHHHHc
Confidence            46899999999999994           2479999999999999988999999999999999998899999999999999


Q ss_pred             ccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhcCccc----ccc-ccccc-CccCCCCCeEEEEEc
Q 016727          285 KCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNHLA----YGI-TLVFL-QISLTHGTFLAYIRQ  358 (384)
Q Consensus       285 ~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~~~~e----Le~-ks~Fk-~~~lpkGs~I~ft~s  358 (384)
                      ++++||++|+++|++|++||+|+|++++.+++++||++++++|+++++.++    +++ +++|+ +++||||+.|+|+++
T Consensus        72 ~~~~~~~~il~~~~~k~iri~~~~~~i~~~~~~da~~~~i~~~~~~~~~~~~~~~l~~f~~~F~~~~~~~kGd~i~~~~~  151 (205)
T 4doo_A           72 GNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTKD  151 (205)
T ss_dssp             TCTTHHHHHHHSCCCEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHGGGTTCCCCCTTCEEEEEEE
T ss_pred             ccHHHHHHHHcCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhccCCCCCCCCEEEEEEc
Confidence            999999999999999999999998789999999999999999999988542    777 99999 789999999999999


Q ss_pred             cCCe--------EEEEEecchhhHHHHHHhhcc
Q 016727          359 IQTL--------IITAWKVLVLTSAKIFHYLWE  383 (384)
Q Consensus       359 p~Gk--------Lv~~IEsk~L~~Alfd~Yl~~  383 (384)
                      |+|.        ..++|+|+.||+|+|+.|||+
T Consensus       152 p~~~l~~~~~g~~~g~I~~~~f~~al~~iwLG~  184 (205)
T 4doo_A          152 PGHVLSVAIEGNHVGSVKSHLLCRSILDLYIGE  184 (205)
T ss_dssp             TTTEEEEEETTEEEEEEECHHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCeeeEEECCHHHHHHHHHHHcCC
Confidence            8765        456999999999999999996

>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}

Probab=100.00  E-value=4.5e-41  Score=311.26  Aligned_cols=166  Identities=18%  Similarity=0.219  Sum_probs=151.9

Q ss_pred             CCcceecCCCCcccCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhCCccCCCChhh
Q 016727          203 RTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAE  282 (384)
Q Consensus       203 ~t~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~~Kwkgksa~E  282 (384)
                      .+.+.||   ||+||+.++         +.++++|+|+|+|+|+|++ ++|||||||+|+|+++++.+| +||+|++++|
T Consensus         2 ~~~~~v~---gv~FP~~~~---------~~~~L~L~GaGvR~~~I~~-~~iKvYa~GlYl~~~~~~~~l-~kwk~~~~~e   67 (208)
T 4dok_A            2 TGMVMVH---EVPFPPQII---------TSKPLSLLGQGITDIEIHF-LQVKFTAIGVYLDPSDVKTHL-DNWKGKTGKE   67 (208)
T ss_dssp             CCCEEET---TEEECSEEE---------SSSEEEEEEEEEEEEEETT-EEEEEEEEEEEECHHHHHHHC-GGGTTCCHHH
T ss_pred             CccEEEc---cEECCcccc---------CCCcceeeeeeeeeEeeee-eEEEEEEEEEEecHHHHHHHH-hhhcCCCHHH
Confidence            4567899   999999993         3468999999999999998 699999999999998899988 8999999999


Q ss_pred             hcccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhcCc---cc---ccc-cccccCccCCCCCeEEE
Q 016727          283 LNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNH---LA---YGI-TLVFLQISLTHGTFLAY  355 (384)
Q Consensus       283 L~~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~~~---~e---Le~-ks~Fk~~~lpkGs~I~f  355 (384)
                      |.++++||+||+++|++|++||+|.+ .++.+++++||++++++||++.+.   +|   |++ +++|++++||||++|+|
T Consensus        68 L~~~~~f~~~ii~~p~eK~iri~~ir-~l~g~~~~~a~~e~~~~~~~~~~~~~~~e~~aL~~f~~~F~~~~~~~G~~I~~  146 (208)
T 4dok_A           68 LAGDDDFFDALASAEMEKVIRVVVIK-EIKGAQYGVQLENTVRDRLAEEDKYEEEEETELEKVVGFFQSKYFKANSVITY  146 (208)
T ss_dssp             HHTCHHHHHHHHHSSSCEEEEEEESS-CEEHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHTCEECTTCEEEE
T ss_pred             HccchHHHHHHhcCcccceEEEEEEe-cCCcHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence            99999999999999999999999997 699999999999999999998773   32   777 99999999999999999


Q ss_pred             EEccC-CeEE------------EEEecchhhHHHHHHhh-cc
Q 016727          356 IRQIQ-TLII------------TAWKVLVLTSAKIFHYL-WE  383 (384)
Q Consensus       356 t~sp~-GkLv------------~~IEsk~L~~Alfd~Yl-~~  383 (384)
                      +|+|+ |.|.            ++|+|+.||+|+|+.|| |+
T Consensus       147 ~~~p~~G~L~i~~s~~G~~~~~~~I~~~~l~~All~~yl~G~  188 (208)
T 4dok_A          147 HFSAKDGICEIGFETEGKEEEKLKVENANVVGMMQRWYLSGS  188 (208)
T ss_dssp             EECSSSCCEEEEEECTTSCCEEEEECCHHHHHHHHHHHSCTT
T ss_pred             EEeCCCCeEEEEEEeCCEeccccccCCHHHHHHHHHHeeCCC
Confidence            99988 8764            26999999999999999 86

>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A*

Probab=100.00  E-value=5.3e-39  Score=299.44  Aligned_cols=171  Identities=20%  Similarity=0.233  Sum_probs=153.6

Q ss_pred             CCCCcceecCCCCcccCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhCCccCCCCh
Q 016727          201 LSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISV  280 (384)
Q Consensus       201 ~~~t~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~~Kwkgksa  280 (384)
                      ++.+.+.|+   |++||+.+      +.|++.++++|.|+|+|+|.|++ ++|||||+|+|+|++++++ |+.||+|+++
T Consensus         3 ~~~~~v~v~---gv~FP~~~------~~p~~~~~L~L~GaGvR~k~i~~-~~iKvYa~GlYl~~~~~~~-L~~k~kg~~a   71 (222)
T 1eyq_A            3 ASITAITVE---NLEYPAVV------TSPVTGKSYFLGGAGERGLTIEG-NFIKFTAIGVYLEDIAVAS-LAAKWKGKSS   71 (222)
T ss_dssp             -CCCCEEET---TEEECSEE------ECTTTCCEEEEEEEEEEEEEETT-EEEEEEEEEEEEETTHHHH-HHHHHTTCCH
T ss_pred             CccccEEEc---ceECCCcc------ccCCCCCceEEeeeEEEEEEeec-eEEEEEEEEEEeCHHHhhH-hhhhhcCCCH
Confidence            456677787   99999999      45667789999999999999997 8999999999999986655 9999999999


Q ss_pred             hhhcccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhcC---ccc---ccc-cccccCccCCCCCeE
Q 016727          281 AELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVN---HLA---YGI-TLVFLQISLTHGTFL  353 (384)
Q Consensus       281 ~EL~~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~~---~~e---Le~-ks~Fk~~~lpkGs~I  353 (384)
                      +||.++++||++|+++|++|++||+|++ +++..++++||+|++++|+++.+   +++   |++ +++|++.+||||++|
T Consensus        72 ~el~~~~~f~~~li~~~~~k~irl~~i~-~v~g~~~~~a~~e~~~~~~~~~g~~~~~e~~~L~~f~~~F~~~~~~kG~~i  150 (222)
T 1eyq_A           72 EELLETLDFYRDIISGPFEKLIRGSKIR-ELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASV  150 (222)
T ss_dssp             HHHHTCHHHHHHHHHCSSCEEEEEEESS-CEEHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCEECTTCEE
T ss_pred             HHhcccHHHHHHHHcCCCceEEEEEEEe-CCCHHHHHHHHHHHHHHHHhccCccccchHHHHHHHHHHhCCCCCCCCCEE
Confidence            9999999999999999999999999997 59999999999999999998754   332   777 999998899999999


Q ss_pred             EEEEccCCeEE--------------EEEecchhhHHHHHHhhcc
Q 016727          354 AYIRQIQTLII--------------TAWKVLVLTSAKIFHYLWE  383 (384)
Q Consensus       354 ~ft~sp~GkLv--------------~~IEsk~L~~Alfd~Yl~~  383 (384)
                      +|+|+|+|.+.              ++|+|+.||+|+|+.|||+
T Consensus       151 ~~~~~p~g~l~is~~~~g~~p~~~~~~I~~~~~~~Al~~i~lG~  194 (222)
T 1eyq_A          151 FYRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMIGE  194 (222)
T ss_dssp             EEEEETTTEEEEEEESSSSCCSSCSEEEECHHHHHHHHHHHHST
T ss_pred             EEEEcCCCceEEEEEeCCccccccccccCCHHHHHHHHHHhhCC
Confidence            99999998653              3689999999999999996

>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana}

Probab=100.00  E-value=1.4e-37  Score=286.43  Aligned_cols=170  Identities=17%  Similarity=0.258  Sum_probs=154.3

Q ss_pred             CcceecCCCCcccCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhCCccCCCChhhh
Q 016727          204 TRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAEL  283 (384)
Q Consensus       204 t~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~~Kwkgksa~EL  283 (384)
                      .+++|||+||++||+.+      +.+++.++++|+|+|+|+|.|.+ ++|||||+|+|+++++++. |+ ||+|++++||
T Consensus        11 ~~~v~e~~tgv~fp~~~------~~~~~~~~l~L~G~GvR~~~i~~-~~ikvYa~glYl~~~~~~~-L~-~~~~~~~~el   81 (217)
T 4dol_A           11 EDYAEETATSVKFKRSV------TLPGCSSPLSLLGTGFREKKFAI-IGVKVYAAGYYVNESILSG-LS-AWTGRSADEI   81 (217)
T ss_dssp             CCEEECTTTCCEEESEE------CCTTCSSCEEEEEEEEEEEESSS-SEEEEEEEEEEECGGGTGG-GG-GGTTCCHHHH
T ss_pred             cceeecCCCCccCCCcc------cCCCCCCceEEEEEEEEEEEEee-eEEEEEEEEEEcCHHHHHH-HH-hhcCCCHHHH
Confidence            44899999999999999      45666789999999999999987 6999999999999998776 87 9999999999


Q ss_pred             cccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhcCcc--c-ccc-cccccCccCCCCCeEEEEEcc
Q 016727          284 NKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNHL--A-YGI-TLVFLQISLTHGTFLAYIRQI  359 (384)
Q Consensus       284 ~~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~~~~--e-Le~-ks~Fk~~~lpkGs~I~ft~sp  359 (384)
                      +++++||++|+++|++|++||++.|+ ++.+++++|+++++.+|+++.+.+  + +++ .++|+++++|||+.|+|+++|
T Consensus        82 ~~~~~~~~~il~~~~~k~lri~~~R~-i~~~~l~~a~~e~i~~~~~~~~~~~~~~l~~f~~~F~d~~v~kGd~i~~~~~p  160 (217)
T 4dol_A           82 QRDSSLFVSIFQAQAEKSLQIVLVRD-VDGKTFWDALDEAISPRIKSPSSEDTTALSTFCCIFQNRPLNKGSVILLTWIN  160 (217)
T ss_dssp             HTCHHHHHHHHHSSSCEEEEEEESSC-BCHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHHHHTTCCBCTTCEEEEEEEE
T ss_pred             cccHHHHHHHHcCCCceEEEEEEEec-CCHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCcCCCCCEEEEEEcC
Confidence            99999999999999999999999985 999999999999999999887742  2 777 999999999999999999998


Q ss_pred             CCeE-------------EEEEecchhhHHHHHHhhcc
Q 016727          360 QTLI-------------ITAWKVLVLTSAKIFHYLWE  383 (384)
Q Consensus       360 ~GkL-------------v~~IEsk~L~~Alfd~Yl~~  383 (384)
                      +|.+             .++|+|+.||+|+|+.|||+
T Consensus       161 ~~~l~i~~~~~g~~~~~~g~I~~~~f~~A~~~iwLG~  197 (217)
T 4dol_A          161 TSNMLVSVSSGGLPTNVDATIESGNVTSALFDVFFGD  197 (217)
T ss_dssp             TTEEEEEEESSSCCCSCCEEEECHHHHHHHHHHHHSS
T ss_pred             CCCEEEEEeCCCccccceeEeCCHHHHHHHHHHHcCC
Confidence            7653             35789999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d1eyqa_	212	d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicag	2e-18

>d1eyqa_ d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Chalcone isomerase
superfamily: Chalcone isomerase
family: Chalcone isomerase
domain: Chalcone isomerase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 80.8 bits (199), Expect = 2e-18
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 9/120 (7%)

Query: 213 GIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLG 272
            +E+P ++       +  +  S  L G G R + I +   +K  A   Y+   +V   L 
Sbjct: 9   NLEYPAVV------TSPVTGKSYFLGGAGERGLTI-EGNFIKFTAIGVYLEDIAV-ASLA 60

Query: 273 PKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVN 332
            K+   S  EL +   FY D++    +  +R       +          ++  A L+ V 
Sbjct: 61  AKWKGKSSEELLETLDFYRDIISGPFEKLIRGSK-IRELSGPEYSRKVMENCVAHLKSVG 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d1eyqa_	212	Chalcone isomerase {Alfalfa (Medicago sativa) [Tax	100.0

>d1eyqa_ d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a+b)
fold: Chalcone isomerase
superfamily: Chalcone isomerase
family: Chalcone isomerase
domain: Chalcone isomerase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=1.6e-38  Score=290.21  Aligned_cols=170  Identities=21%  Similarity=0.242  Sum_probs=155.8

Q ss_pred             CCCcceecCCCCcccCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhCCccCCCChh
Q 016727          202 SRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVA  281 (384)
Q Consensus       202 ~~t~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~~Kwkgksa~  281 (384)
                      +.|.+.||   ||+||..+      +.+++.+++.|.|+|+|.++|.+ ++|||||+|+|+++++++. |..+|+||+++
T Consensus         1 ~~~~v~v~---~v~fP~~i------~~~~~~~~l~L~G~GvR~~~i~~-~~ikvYa~GlYl~~~~~~~-l~~~~~~k~~~   69 (212)
T d1eyqa_           1 SITAITVE---NLEYPAVV------TSPVTGKSYFLGGAGERGLTIEG-NFIKFTAIGVYLEDIAVAS-LAAKWKGKSSE   69 (212)
T ss_dssp             CCCCEEET---TEEECSEE------ECTTTCCEEEEEEEEEEEEEETT-EEEEEEEEEEEEETTHHHH-HHHHHTTCCHH
T ss_pred             CcceEEEC---CccCCCcc------cCCCCCCceEEeeeEEeeEEEee-eEEEEEEEEEEcccchhHH-Hhhhhcccchh
Confidence            45788999   99999999      46666789999999999999987 6999999999999999887 78999999999


Q ss_pred             hhcccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhcCcc--c----ccc-cccccCccCCCCCeEE
Q 016727          282 ELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNHL--A----YGI-TLVFLQISLTHGTFLA  354 (384)
Q Consensus       282 EL~~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~~~~--e----Le~-ks~Fk~~~lpkGs~I~  354 (384)
                      ||.++.+||++|++++++|++||||+|+ |+.+|++|||++++.+|+++.+..  +    +++ +++|+++++|||+.|+
T Consensus        70 el~~~~~~~~~il~~~~~k~iriv~vr~-v~~~~l~dal~e~l~~r~~~~~~~~~~~~~~l~~f~~~F~~~~~~kG~~i~  148 (212)
T d1eyqa_          70 ELLETLDFYRDIISGPFEKLIRGSKIRE-LSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVF  148 (212)
T ss_dssp             HHHTCHHHHHHHHHCSSCEEEEEEESSC-EEHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCEECTTCEEE
T ss_pred             hhhccHHHHHHHhcCCcceEEEEEEEec-CCHHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhcCCccCCCCEEE
Confidence            9999999999999999999999999985 999999999999999999987732  1    666 9999999999999999


Q ss_pred             EEEccCCeEEE--------------EEecchhhHHHHHHhhcc
Q 016727          355 YIRQIQTLIIT--------------AWKVLVLTSAKIFHYLWE  383 (384)
Q Consensus       355 ft~sp~GkLv~--------------~IEsk~L~~Alfd~Yl~~  383 (384)
                      |+|+|+|.+.+              +|+++.||+|+|+.|||+
T Consensus       149 ~~~~p~g~l~vs~~~~~~~~~~~~g~I~~~~~~~al~~~yLGd  191 (212)
T d1eyqa_         149 YRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMIGE  191 (212)
T ss_dssp             EEEETTTEEEEEEESSSSCCSSCSEEEECHHHHHHHHHHHHST
T ss_pred             EEECCCCcEEEEEecCCCCCceeeEEECCHHHHHHHHHHHcCC
Confidence            99999998864              799999999999999997