Citrus Sinensis ID: 016746


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
MYGLIKFLVSCRKLIVITIMRICMQLFKSPISHFVMFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEKLLSRRSKRRHKPDPKKDDEINSETEQNDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGYYRPVLLRRAETF
cHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHcccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEcHHHHHHHHHHHcccccccccHHHHEEEEEcccccccccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHcccc
cccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccEEccHHHHHHHHcccEEEEccEEEcHHHHHHHHHHHHHHHccccccccHccEEEEEEcccccccccccEHHHHHHHHHHHHHHHHHHHccHHHHHccccccccccccccccccccHccHccccccHHHHHHHHHHHHHHHcccEEccccccEEEEEEEcccccccccccEEEEEEcccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccEEEEEcccc
MYGLIKFLVSCRKLIVITIMRICMQLfkspishfvmfsyfpfmqvmdksnfkittdeEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEhhhdhlpdfadkYVIFRrgigvdqttdYFFMEKVDMLIGRFWSFLMRRTGLEKLLSrrskrrhkpdpkkddeinseteqnDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQastkskaerGVYLkhfrnipmadmeivlpekknpgltpldWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSmydkqldsgkgtlLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGYYRPVLLRRAETF
MYGLIKFLVSCRKLIVITIMRICMQLFKSPISHFVMFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHhdhlpdfadkYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEkllsrrskrrhkpdpkkddeinseteqndlsverHRLENMELSFRNLLGKVTIQEPTFDRIIVLYrqastkskaergvYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDLRCEELikeefgyyrpvLLRRAETF
MYGLIKFLVSCRKLIVITIMRICMQLFKSPISHFVMFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEkllsrrskrrhkpdpkkddEINSETEQNDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGYYRPVLLRRAETF
*YGLIKFLVSCRKLIVITIMRICMQLFKSPISHFVMFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLE****************************************ELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGYYRPVLLR*****
*******LVSCRKLIVITI****************MFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLE**************************QNDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYR************YLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGK***QDLDLRCEELIKEEFGYYRPVLLRRAE**
MYGLIKFLVSCRKLIVITIMRICMQLFKSPISHFVMFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEKLLS************************DLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGYYRPVLLRRAETF
MYGLIKFLVSCRKLIVITIMRICMQLFKSPISHFVMFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEKLLSR****************NSETEQNDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGYYRPVLLRRA***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYGLIKFLVSCRKLIVITIMRICMQLFKSPISHFVMFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEKLLSRRSKRRHKPDPKKDDEINSETEQNDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILxxxxxxxxxxxxxxxxxxxxxEFGYYRPVLLRRAETF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
356571641 492 PREDICTED: uncharacterized protein LOC10 0.851 0.662 0.815 1e-156
224069647 486 predicted protein [Populus trichocarpa] 0.853 0.672 0.807 1e-155
356561156 492 PREDICTED: uncharacterized protein LOC10 0.851 0.662 0.812 1e-154
255543525 555 conserved hypothetical protein [Ricinus 0.853 0.589 0.779 1e-150
449455934483 PREDICTED: uncharacterized protein LOC10 0.851 0.674 0.779 1e-149
15230351 487 uncharacterized protein [Arabidopsis tha 0.853 0.671 0.761 1e-148
224128788 487 predicted protein [Populus trichocarpa] 0.851 0.669 0.760 1e-148
225451627 492 PREDICTED: uncharacterized protein LOC10 0.872 0.678 0.763 1e-145
11994456 516 unnamed protein product [Arabidopsis tha 0.853 0.633 0.699 1e-144
357508453 491 hypothetical protein MTR_7g084200 [Medic 0.840 0.655 0.757 1e-143
>gi|356571641|ref|XP_003553984.1| PREDICTED: uncharacterized protein LOC100819645 [Glycine max] Back     alignment and taxonomy information
 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 266/326 (81%), Positives = 296/326 (90%)

Query: 44  QVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADK 103
           QVM+KSNFKI TD+EIDVA SGQYLL+LPITV+ESKLDK LLK+YFEEHHHD LPDF+DK
Sbjct: 108 QVMEKSNFKIVTDDEIDVAHSGQYLLNLPITVDESKLDKTLLKKYFEEHHHDDLPDFSDK 167

Query: 104 YVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEKLLSRRSKRRHKPDPKKDDE 163
           YVIFRRGIG+D+TTDYF MEKVDMLIGRFW++L+R T LEKLLSRRSKR +K DPKKD+E
Sbjct: 168 YVIFRRGIGIDRTTDYFVMEKVDMLIGRFWAYLLRVTRLEKLLSRRSKRHNKKDPKKDNE 227

Query: 164 INSETEQNDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYL 223
           INSE +  DL VER RLENM+LSF NLLGK  IQEPTFDRIIV+YR+A TKSK ERG+Y+
Sbjct: 228 INSEADGQDLYVERIRLENMQLSFHNLLGKTLIQEPTFDRIIVVYRRARTKSKEERGIYV 287

Query: 224 KHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAIL 283
           KHF+NIPMADMEIVLPEKKNPGLTP+DWVKFL SA+VGLVAV++S ++   D WV +A+L
Sbjct: 288 KHFKNIPMADMEIVLPEKKNPGLTPMDWVKFLGSAIVGLVAVVSSLEMPSADWWVIIAVL 347

Query: 284 STVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISF 343
           STVIGY AKTYFTFQQNMA YQN+ITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVI+SF
Sbjct: 348 STVIGYIAKTYFTFQQNMAQYQNLITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIVSF 407

Query: 344 FILMEQGKATRQDLDLRCEELIKEEF 369
           FILMEQGKATRQDLD  CEELIKEEF
Sbjct: 408 FILMEQGKATRQDLDQWCEELIKEEF 433




Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069647|ref|XP_002303016.1| predicted protein [Populus trichocarpa] gi|222844742|gb|EEE82289.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356561156|ref|XP_003548851.1| PREDICTED: uncharacterized protein LOC100813179 [Glycine max] Back     alignment and taxonomy information
>gi|255543525|ref|XP_002512825.1| conserved hypothetical protein [Ricinus communis] gi|223547836|gb|EEF49328.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449455934|ref|XP_004145705.1| PREDICTED: uncharacterized protein LOC101204725 [Cucumis sativus] Back     alignment and taxonomy information
>gi|15230351|ref|NP_188565.1| uncharacterized protein [Arabidopsis thaliana] gi|20260588|gb|AAM13192.1| unknown protein [Arabidopsis thaliana] gi|332642706|gb|AEE76227.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224128788|ref|XP_002320422.1| predicted protein [Populus trichocarpa] gi|222861195|gb|EEE98737.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225451627|ref|XP_002275991.1| PREDICTED: uncharacterized protein LOC100241226 [Vitis vinifera] Back     alignment and taxonomy information
>gi|11994456|dbj|BAB02458.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357508453|ref|XP_003624515.1| hypothetical protein MTR_7g084200 [Medicago truncatula] gi|355499530|gb|AES80733.1| hypothetical protein MTR_7g084200 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
TAIR|locus:2090639487 AT3G19340 [Arabidopsis thalian 0.853 0.671 0.727 3.6e-128
TAIR|locus:2159108809 AT5G13940 [Arabidopsis thalian 0.843 0.399 0.596 1.9e-104
TAIR|locus:505006322708 AT2G46915 "AT2G46915" [Arabido 0.490 0.265 0.266 3.6e-16
TAIR|locus:2090639 AT3G19340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1258 (447.9 bits), Expect = 3.6e-128, P = 3.6e-128
 Identities = 238/327 (72%), Positives = 284/327 (86%)

Query:    44 QVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADK 103
             QVM+KSNFKIT++EE++VA SGQYLL+LPI V+ESKLDKKLLKRYFEEH H+++PDF+DK
Sbjct:   103 QVMEKSNFKITSNEEMEVAHSGQYLLNLPIKVDESKLDKKLLKRYFEEHPHENIPDFSDK 162

Query:   104 YVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEXXXXXXXXXXXXXXXXXXXE 163
             YVIFRRGIG+D+TTDYFFMEK+D++I RFWSFLMR T LE                   E
Sbjct:   163 YVIFRRGIGLDKTTDYFFMEKLDVIISRFWSFLMRITRLEKLRAKRSSSLNKKDPKKDDE 222

Query:   164 INSETEQNDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYL 223
              N +T+ ++L VER RLEN +LSF++ L K+TIQEPTFDR+IV+YR+AS+K+  ERG+Y+
Sbjct:   223 PNPDTDNDELYVERIRLENSKLSFKSFLSKLTIQEPTFDRMIVVYRRASSKTNLERGIYV 282

Query:   224 KHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAIL 283
             KHF+NIPMADMEIVLPEK+NPGLTP+DWVKFL+SAVVGLVAV+TS ++ + D WV +AIL
Sbjct:   283 KHFKNIPMADMEIVLPEKRNPGLTPMDWVKFLISAVVGLVAVLTSVEMPKSDPWVIIAIL 342

Query:   284 STVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISF 343
             STV+GYCAKTYFTFQQNMA YQN+ITQSMYDKQLDSG+GTLLHLCDDVIQQEVKEV+I F
Sbjct:   343 STVLGYCAKTYFTFQQNMATYQNLITQSMYDKQLDSGRGTLLHLCDDVIQQEVKEVMICF 402

Query:   344 FILMEQGKATRQDLDLRCEELIKEEFG 370
             +ILMEQGKAT +DLDLRCEELIKEEFG
Sbjct:   403 YILMEQGKATLEDLDLRCEELIKEEFG 429




GO:0005886 "plasma membrane" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2159108 AT5G13940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006322 AT2G46915 "AT2G46915" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh4_pm.C_LG_II001122
hypothetical protein (486 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
pfam12576150 pfam12576, DUF3754, Protein of unknown function (D 7e-16
>gnl|CDD|221645 pfam12576, DUF3754, Protein of unknown function (DUF3754) Back     alignment and domain information
 Score = 73.9 bits (182), Expect = 7e-16
 Identities = 29/151 (19%), Positives = 62/151 (41%), Gaps = 30/151 (19%)

Query: 201 FDRIIVLYRQASTKSKAERG------------VYLKHFRNIPMADMEIVLPEKKNPGLTP 248
           F+R+++L R        ++             +YLK F+N+P AD+E++ P  +   +  
Sbjct: 1   FERVVLLIRFKDDDYFKKKAKKEKDKSFTPGKLYLKLFKNVPKADLEMLFPNTR-VSMRW 59

Query: 249 LDWVKFLVSAVVGLVAVITS-----------------AQLHEIDLWVGMAILSTVIGYCA 291
            D +   V A+ G +AV+                    +     L   ++ L  +  +  
Sbjct: 60  KDRLLIGVPAIGGGIAVVLKKLGAILLILSVSFFFWEGENIMPILIADLSALVALGTFAF 119

Query: 292 KTYFTFQQNMAAYQNMITQSMYDKQLDSGKG 322
           + +  ++     YQ ++T+++Y K L +  G
Sbjct: 120 RQWSNYKNKKIRYQKLVTKTLYFKNLANNAG 150


This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important. Length = 150

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 383
PF12576141 DUF3754: Protein of unknown function (DUF3754); In 100.0
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length Back     alignment and domain information
Probab=100.00  E-value=9.5e-36  Score=263.26  Aligned_cols=121  Identities=40%  Similarity=0.647  Sum_probs=108.6

Q ss_pred             cceEEEEEeeccccc--------------cCCCCeEEEeeCCCCCCCccccccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 016746          201 FDRIIVLYRQASTKS--------------KAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVI  266 (383)
Q Consensus       201 FkrVVvlyR~~~~~~--------------k~~~~l~LK~FkdIP~aDLE~llPekK~v~~~~~D~~~l~v~avvg~v~~~  266 (383)
                      ||||||+||.++++.              ..+++|+||+||||||+|||+||||+| |+|||+||+++++++++|+++++
T Consensus         1 f~~vvllyr~~~~~~~~~~~~~~~~~~~~~~~~~i~lK~FkdIP~aDLE~llP~~k-v~~~~~D~~~l~~~~vvg~v~~~   79 (141)
T PF12576_consen    1 FEEVVLLYRFKDSRKFKAKKESIQEAPKKFKPGPIYLKSFKDIPMADLEMLLPEKK-VRMRPFDRVKLGVSAVVGGVAVF   79 (141)
T ss_pred             CcEEEEEEEecccccchhhhhhhhhccccCCCCCeEEEEeCCCCccchhHhCCCCc-CCcCHHHHHHHHHHHHHHHHHHH
Confidence            899999999877432              136999999999999999999999998 99999999999999999999999


Q ss_pred             HHhhcch----h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh
Q 016746          267 TSAQLHE----I--DLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKG  322 (383)
Q Consensus       267 ~~l~~~~----~--d~~~i~a~ls~l~~~~~k~~~~y~~~~~ry~~~lt~~LY~K~l~nn~G  322 (383)
                      .++....    +  .++..+++++++++||+|+|++|+|+|.+||+++|++|||||+|||+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~ry~~~l~~~LY~K~l~sn~G  141 (141)
T PF12576_consen   80 VKLVGMSLLLLSDIFLILILSLLSALGGYAFRQYTGYKNNRARYQLLLTKTLYFKNLDSNRG  141 (141)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            8865433    2  256677888889999999999999999999999999999999999998



There is a single completely conserved residue P that may be functionally important.


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 64/453 (14%), Positives = 130/453 (28%), Gaps = 144/453 (31%)

Query: 24  MQL-FKSPISHFV--MFSYFPFMQVMDKSNFKITTDEEIDV------ALSGQYLLHLPIT 74
            Q  +K  +S F       F    V D     I + EEID       A+SG   L     
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAVSGTLRL---FW 69

Query: 75  VNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDML------ 128
              SK  +++++++ EE    +           +R   +       ++E+ D L      
Sbjct: 70  TLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM---YIEQRDRLYNDNQV 125

Query: 129 -----IGRFWSFLMRRTGLEKL------------------LSRRSKRRHKPDPKKDDEI- 164
                + R   +L  R  L +L                  ++      +K   K D +I 
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 165 -------NSETE----QNDLSVE---------------RHRLENMELSFRNLLGKVTIQE 198
                  NS          L  +               + R+ +++   R LL     + 
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-----KS 240

Query: 199 PTFDR-IIVLYRQASTKSKAERGVY----LKHF----------RNIPMADM-------EI 236
             ++  ++VL             V        F          R   + D         I
Sbjct: 241 KPYENCLLVL-----------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 237 VLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEID-LWVGMAILSTVIGYCAKTYF 295
            L +  +  LTP D VK L+   +         ++   +   + +      I        
Sbjct: 290 SL-DHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI------IA------- 334

Query: 296 TFQQNMAAYQNMITQSMYDKQLDSGK-GTLLHLCDDVIQ-QEVKEVIISFFILMEQGKAT 353
                  + ++ +      K ++  K  T++    +V++  E +++     +        
Sbjct: 335 ------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 354 RQ-------DLDLRCEELIKEEFGYYRPVLLRR 379
                    D+      ++  +   Y   L+ +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYS--LVEK 419


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00