Citrus Sinensis ID: 016769
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 383 | 2.2.26 [Sep-21-2011] | |||||||
| Q54HW5 | 359 | Guanine nucleotide-bindin | yes | no | 0.840 | 0.896 | 0.297 | 5e-43 | |
| Q9EQ15 | 326 | Guanine nucleotide-bindin | yes | no | 0.817 | 0.960 | 0.293 | 4e-37 | |
| Q9BYB4 | 327 | Guanine nucleotide-bindin | yes | no | 0.775 | 0.908 | 0.277 | 8e-33 | |
| B6K7R8 | 365 | ASTRA-associated protein | N/A | no | 0.882 | 0.926 | 0.267 | 2e-20 | |
| A2RA56 | 440 | ASTRA-associated protein | yes | no | 0.822 | 0.715 | 0.267 | 7e-20 | |
| B8NG55 | 429 | ASTRA-associated protein | N/A | no | 0.843 | 0.752 | 0.235 | 2e-18 | |
| B6HHJ8 | 440 | ASTRA-associated protein | yes | no | 0.801 | 0.697 | 0.246 | 4e-18 | |
| Q9UTR9 | 368 | ASTRA-associated protein | yes | no | 0.874 | 0.910 | 0.256 | 1e-17 | |
| C9STX5 | 404 | ASTRA-associated protein | N/A | no | 0.819 | 0.777 | 0.262 | 2e-14 | |
| A7ESR0 | 503 | ASTRA-associated protein | N/A | no | 0.848 | 0.646 | 0.243 | 3e-14 |
| >sp|Q54HW5|GNB1L_DICDI Guanine nucleotide-binding protein subunit beta-like protein 1 homolog OS=Dictyostelium discoideum GN=gnb1l PE=4 SV=1 | Back alignment and function desciption |
|---|
Score = 175 bits (444), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 71/393 (18%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSA--AHG 64
PDP +LRGH+ +V V F + P +L++G+ GEL++W+ + + +S+ HS G
Sbjct: 13 PDPYYILRGHKFNVNSVLFDKVNPNLLYSGSGDGELKLWNIEEKKCISTQIAHSEGIGGG 72
Query: 65 IVSV-----------ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHF 113
++S+ ++SQGRDG +K W I + N + ++TNS
Sbjct: 73 VLSLQWLSNDNNNENNNNNDEICGNILSQGRDGVIKIWSIIDNCTFKN-TYRLETNS--- 128
Query: 114 CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYM 173
LSL K C + S D S E
Sbjct: 129 --LSLGK--------------CSSLSSNLLSISGSAIDPTSSTSQVE------------- 159
Query: 174 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL-------PSK 226
IWDL + +L N+ G+ M+++ Y ++
Sbjct: 160 -----------IWDLKNKQVINKLKPNNQQLFEKL-----GLPMSLKLYYENENNDNSNQ 203
Query: 227 SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIV 286
S + + GYE+G +L+WD+RN IPL + K+H EP+L ++ + GISG D I+
Sbjct: 204 SNDQIRLCTGYENGELLIWDLRNTSIPLVSSKLHNEPILSFALSNNSTKGISGSGDTNII 263
Query: 287 LYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK 346
+N+++ + I K L GIS IR D KI ATAGWD+R+RI+N++K + LAILK
Sbjct: 264 EFNINYESKQFNITKTHKLNNGGISEIKIRNDEKIYATAGWDKRIRIFNFKKQTPLAILK 323
Query: 347 YHHATCNAVSFSSDCKLMASASEDSTVALWELY 379
YH + ++ F+S+ ++AS S+D +ALW++Y
Sbjct: 324 YHTESVYSIDFNSN-NILASGSKDCKIALWDIY 355
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9EQ15|GNB1L_MOUSE Guanine nucleotide-binding protein subunit beta-like protein 1 OS=Mus musculus GN=Gnb1l PE=2 SV=2 | Back alignment and function description |
|---|
Score = 155 bits (392), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 186/382 (48%), Gaps = 69/382 (18%)
Query: 5 PPPPDPVAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
PPPP P VLRG +++V + F P+LF+G+ G + IW ++Q R + ++
Sbjct: 6 PPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIW-SLQTRRIVTTLNG 64
Query: 60 SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
G++ + T P ++++SQGRD + WD+E G + S ++ +S FC+ S++
Sbjct: 65 HGGQGVIWLKTLPQG--HQLLSQGRDLRLCLWDLEEGRNTIMDS--VQLDSVGFCRGSIL 120
Query: 120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQ 179
+ C+ +AV G+
Sbjct: 121 VRG----------QQCW-----------------------------------MLAVPGKG 135
Query: 180 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK-GRGMCMAVQAYLPSKSQGFVNVLAGYE 238
EV+I ++ + + C P ++ G MC+ + + S +LAGYE
Sbjct: 136 SDEVQILEMPSKT-------SVCTLKPEADARPGMPMCLGLWQ---TNSSLRPLLLAGYE 185
Query: 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV 298
DGS+ +WDI + + + H EPV+ L D GISG A + + +++LD S
Sbjct: 186 DGSVTLWDISERKV-CSQITCHEEPVMGLDFDSQKAKGISGSAGKVLAVWSLDDQQ-SLQ 243
Query: 299 IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 358
+KK L PGI+ +IRPD KI ATAGWD R+R++++R LA+L +H A V+F+
Sbjct: 244 VKKTHELTNPGIAEVTIRPDHKILATAGWDHRIRVFHWRTMKPLAVLAFHSAPVYCVAFA 303
Query: 359 SDCKLMASASEDSTVALWELYP 380
+D L+A+ S+D +++W LYP
Sbjct: 304 AD-GLLAAGSKDQRISIWSLYP 324
|
Mus musculus (taxid: 10090) |
| >sp|Q9BYB4|GNB1L_HUMAN Guanine nucleotide-binding protein subunit beta-like protein 1 OS=Homo sapiens GN=GNB1L PE=1 SV=2 | Back alignment and function description |
|---|
Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 169/382 (44%), Gaps = 85/382 (22%)
Query: 13 VLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSS---------SWV 58
VLRG ++ V + F Q +P+LF+G+ G + IW R V++ +W+
Sbjct: 15 VLRGTQSPVHALHFCEGAQAQGRPLLFSGSQSGLVHIWSLQTRRAVTTLDGHGGQCVTWL 74
Query: 59 HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL 118
+ G +++SQGRD + WD+ G + S+ ++ S FC+ S+
Sbjct: 75 QTLPQG------------RQLLSQGRDLKLCLWDLAEGRSAVVDSVCLE--SVGFCRSSI 120
Query: 119 VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGE 178
+ A + E ++ E S+C K PK A G
Sbjct: 121 LAGGQPRWTLAVPGRGSDEVQILEMPSKTSVCALK----------------PKADAKLGM 164
Query: 179 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 238
+ C RL Q C P LAGYE
Sbjct: 165 PM-------------CLRLWQADCSSRPLL-------------------------LAGYE 186
Query: 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV 298
DGS+++WD+ + + + H EPV+ L D GISG A + + +++LD +
Sbjct: 187 DGSVVLWDVSEQKV-CSRIACHEEPVMDLDFDSQKARGISGSAGKALAVWSLDWQQ-ALQ 244
Query: 299 IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 358
++ L PGI+ +IRPD KI ATAGWD R+R++++R LA+L +H A V+F+
Sbjct: 245 VRGTHELTNPGIAEVTIRPDRKILATAGWDHRIRVFHWRTMQPLAVLAFHSAAVQCVAFT 304
Query: 359 SDCKLMASASEDSTVALWELYP 380
+D L+A+ S+D ++LW LYP
Sbjct: 305 AD-GLLAAGSKDQRISLWSLYP 325
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Homo sapiens (taxid: 9606) |
| >sp|B6K7R8|ASA1_SCHJY ASTRA-associated protein 1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=asa1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 106/396 (26%), Positives = 163/396 (41%), Gaps = 58/396 (14%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
P P VLRGH +SVT + F + IL++G G + WD R H+ + I+
Sbjct: 4 PTPFFVLRGHLSSVTSLSF-VSDGILYSGDANGWMICWDLSVMRPTHIWRAHTKS--ILG 60
Query: 68 VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK 127
V S V + GRD V W + S+ L++ L +++ N +
Sbjct: 61 VYGCSS---EVVWTHGRDMQVARWHLNPPTGGSHIPLSL---------LHAIQQEKKNDQ 108
Query: 128 QANEPKDCYER-EVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYM--AVAGEQLSEVE 184
Q++ G T++L SF I PA G + V EQL
Sbjct: 109 QSSSSLTIVSSVHKGYFFQTNNLTFC-----SFAI---SPAAGLLVVPNTVNAEQLDVYA 160
Query: 185 IWDLNTAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 241
+ D + ++R C + Q++ P G M +A+ V ++AGYE G
Sbjct: 161 LNDTSDSDRRDNCGKRLQHALEPKPQIEKTGAVMSVALHV-----KYNKVVLVAGYESGH 215
Query: 242 IL------------------VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ 283
++ VW + + A KVH EPVL + S AD
Sbjct: 216 VVQYIADVDAAQKVNVYFQQVWQV------MYAEKVHKEPVLSVVFGNDNGYLYSSSADD 269
Query: 284 KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA 343
IV + + S + + + PG +R D KI +AGWD R R+Y + + LA
Sbjct: 270 YIVRHTICLSKETHTNPESMKTGHPGQQCLRVRSDDKILVSAGWDGRGRVYGAKSLAKLA 329
Query: 344 ILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379
+LKYH TCN + L+A S+DS ++LW++Y
Sbjct: 330 VLKYHSETCNCAAIQPGSNLIALGSKDSRISLWQIY 365
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Component of the ASTRA complex involved in chromatin remodeling. Schizosaccharomyces japonicus (strain yFS275 / FY16936) (taxid: 402676) |
| >sp|A2RA56|ASA1_ASPNC ASTRA-associated protein 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=asa1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 162/400 (40%), Gaps = 85/400 (21%)
Query: 4 RPPPPDPVAVLRGHRASVTDV-CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA 62
R PP P +LRGH A++ + FHQ L +G G + +WD V R ++W A
Sbjct: 9 RQPPATPTYILRGHAAAIHALQIFHQNLR-LVSGDADGWIVVWDLVSKRP-RATW--KAH 64
Query: 63 HGIVSVATGPSIG---LNKVISQGRDGTVKCW----------------DIE--NGGLSSN 101
G V G S G + +V + GRD ++ W DIE + +S
Sbjct: 65 DGTVLEVKGFSFGNGAVTEVFTHGRDHKLRVWRFSLQDEESLQKVLPVDIEKTSSTAASQ 124
Query: 102 PSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSF 159
P L ++ N+ +FC S+V P A A+ D+ E+ +
Sbjct: 125 PWLVHSLPVNALNFCAFSMVFLPPDKANTAS--------------------DASEAPKEN 164
Query: 160 EIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV 219
+ V P + ++++ L R + P + GM MA
Sbjct: 165 TSLSSVLIAVPNALNSGA-----IDLFHLPQERRICTI--------PADTEVQTGMVMA- 210
Query: 220 QAYLPSKSQGFVNVLAGYEDGSILVWDIR----------NPGIP-----LTAMKVHLEPV 264
A L G + V + YEDG ++V R + P L + H +PV
Sbjct: 211 -ANLVISPSGELYVASAYEDGRVMVHGCRGSLQEKDLTQSTKTPWKWEKLYVCRAHSQPV 269
Query: 265 LCLSIDESCNGGISGGADQKIVLYNL------DHSTGSCVIKKEINLERPGISGTSIRPD 318
L L + + N S AD + + + H+ I+ IN + G G IR D
Sbjct: 270 LSLHVSPAGNYFFSSSADAVLAKHPIPSLGSPGHAPEELPIRS-INTKHAGQQGVRIRSD 328
Query: 319 SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 358
KI ATAGWD RVR+Y+ + LA+LK+H C AV+F+
Sbjct: 329 GKIFATAGWDSRVRVYSCKTMKELAVLKWHKDGCYAVAFA 368
|
Component of the ASTRA complex involved in chromatin remodeling. Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011) |
| >sp|B8NG55|ASA1_ASPFN ASTRA-associated protein 1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=asa1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 156/390 (40%), Gaps = 67/390 (17%)
Query: 6 PPPDPVAVLRGHRASVTDV-CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG 64
PP P +LRGH + + + FHQ L +G G + +WD V R V+ H A
Sbjct: 9 PPASPTYILRGHASPIHGLHIFHQNLR-LISGDADGWIIVWDLVFKRPVAVWKAHEGAIL 67
Query: 65 IVSVATGPSIGLNKVISQGRDGTVKCW----------------DI--ENGGLSSNPSL-- 104
V T + + +V + GRD + W DI +N ++ P L
Sbjct: 68 EVKGFTFSNQTVTEVYTHGRDHKLCVWRFRAQDEDLLQKTLPVDISEQNQSQATQPWLVH 127
Query: 105 TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164
++ N+ +FC S++ E D E E + T S + + S + +
Sbjct: 128 SLPVNALNFCAFSML------FLDEEESPDTGEPEASDKTSTQSPGKNPPQHHSLFAVPN 181
Query: 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP 224
G ++I+ L R + P + GM MAV +
Sbjct: 182 ALNSG------------AIDIFHLPRERRLCTI--------PADQTTQTGMVMAVTLFYS 221
Query: 225 SKSQGFVNVLAGYEDGSILVWDIRNPGIP----------------LTAMKVHLEPVLCLS 268
S + ++ + YEDG ++V+ +R + + H +P L +
Sbjct: 222 STRELYIA--SAYEDGHVMVFALRGQLTTQDFSGKASSDSWKWERVYVARAHSQPALSID 279
Query: 269 IDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 328
+ + +S AD +V + + G K+++ + G G IR D ++ ATAGWD
Sbjct: 280 VFPAGGYFVSSSADALVVKHPVP-GFGEVGTVKKVDTKHSGQQGVRIRSDGRVFATAGWD 338
Query: 329 RRVRIYNYRKGSALAILKYHHATCNAVSFS 358
RVR+Y+ + LA+LK+H C V+F+
Sbjct: 339 SRVRVYSCKTLRELAVLKWHKEGCYTVAFA 368
|
Component of the ASTRA complex involved in chromatin remodeling. Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) (taxid: 332952) |
| >sp|B6HHJ8|ASA1_PENCW ASTRA-associated protein 1 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=asa1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 99/401 (24%), Positives = 162/401 (40%), Gaps = 94/401 (23%)
Query: 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV 66
P PV +LRGH + V + + L +G G + +WD V R V++ W A G V
Sbjct: 11 PATPVYILRGHASPVHALHIYSQNLRLVSGDANGWIVVWDLVTKRPVTA-W--KAHEGAV 67
Query: 67 SVATGPSIG--LNKVISQGRDGTVKCWDIE-------------------NGGLSSNPSL- 104
A G +G ++ + GRD + W + G + P L
Sbjct: 68 LEARGFDVGSGATEIYTHGRDHKLCVWKLRPEDETFLNKTLPVDATESAQPGSKTQPWLL 127
Query: 105 -TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163
++ N+ +FC S+ + N + + + G + N F + +
Sbjct: 128 HSLPVNALNFCAFSMA---FVNP----DGLPAFPSQSG-----------RPENTLFAVPN 169
Query: 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL 223
+ + G V+I+ L + R + + P+ S GM MAV ++
Sbjct: 170 ALDSGG-------------VDIFHLPSERRISTI--------PSEQSPKTGMLMAVNLFI 208
Query: 224 PSKSQGFVNVLAGYEDGSILVWDIR---------------NP--GIPLTAMKVHLEPVLC 266
G + V + YEDG ++V+ R NP L A + H +PVL
Sbjct: 209 --SPSGDLYVASAYEDGHVMVFVHRGALKSASFEREYISNNPLKWDKLYAGRPHSQPVLS 266
Query: 267 LSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK----------KEINLERPGISGTSIR 316
L + S IS AD IV + + ++ + I K +N + G G IR
Sbjct: 267 LDVAPSHGYFISSSADALIVKHPIPNTGSAGYIPTAGYKEESPLKIVNTKHSGQQGLRIR 326
Query: 317 PDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSF 357
D K+ ATAGWD R+R+Y+ + LA+LK+H C +++F
Sbjct: 327 SDEKVFATAGWDSRIRVYSGKTMKELAVLKWHKDGCYSIAF 367
|
Component of the ASTRA complex involved in chromatin remodeling. Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) (taxid: 500485) |
| >sp|Q9UTR9|ASA1_SCHPO ASTRA-associated protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=asa1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 163/402 (40%), Gaps = 67/402 (16%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
P P VLRGH +SVT V F L++G G + W R + H+ +
Sbjct: 4 PTPFYVLRGHSSSVTSVLF-DANEYLYSGDEAGFVICWCLTSMRPKCAWRAHTKTILGMQ 62
Query: 68 VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK 127
+ G ++ + GRD + W I+ ++ N F LS + E
Sbjct: 63 IVKGGAL-----CTHGRDCRLVTWKIDFNCMTDN-----------FMSLSKLAE------ 100
Query: 128 QANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP-AEGPKYMAVA---GEQLSEV 183
Y E + S S SN + P + P+ V E+
Sbjct: 101 -----LQNYGPEASSETEKSSAFISIHSNIVVNSLTFCPFSYSPQSKIVVLCNTLNFEEL 155
Query: 184 EIWDLNTAERCTRLHQNSCGG------SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 237
+++D + + H+ CG P S G M+ + + +V + AGY
Sbjct: 156 DVYDDESLYH-PQTHKEDCGKRLQTRIQPEESVGKTGSVMSTSVTV--TDEKYVLLAAGY 212
Query: 238 EDGSILVW------------DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKI 285
E G ++ + D + + A K H +PVL S++ + + S GAD I
Sbjct: 213 ESGHVVQYICSLENVKTVTLDFKAVWKMVYAYKSHSQPVL--SVEYAGSKLFSTGADDCI 270
Query: 286 VLYNLDHSTGSCVIKKEINLERP--------GISGTSIRPDSKIAATAGWDRRVRIYNYR 337
L H T S + +L P G IR D+KI ATAGWD R R+Y+ +
Sbjct: 271 CL----HPTPSSIADDLGSLPHPIFRKTKHCGQQNIRIRSDNKILATAGWDGRGRVYSCQ 326
Query: 338 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379
+ LA+LKYH N+++F ++A AS+D+ ++LW+LY
Sbjct: 327 TLAPLAVLKYHSDGINSLAFHPGSNVIALASKDTRISLWKLY 368
|
Component of the ASTRA complex probably involved in chromatin remodeling. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|C9STX5|ASA1_VERA1 ASTRA-associated protein 1 OS=Verticillium albo-atrum (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) GN=asa1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 153/370 (41%), Gaps = 56/370 (15%)
Query: 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG 64
P P P +LRGH+A V + F L +G G + +WD R + H A
Sbjct: 26 PETPHPRTILRGHKAQVHALAFVGNNDRLASGDAEGYVALWDLTIMRPTAVWQPHDNA-- 83
Query: 65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA 124
I+ + G +++I+ GRD + W + S +L+ K L EP
Sbjct: 84 ILGIQ---GWGADRIITHGRDHKLAVWKLAT---SDEANLSKK------LPLDDTSEP-- 129
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFE--IIDDVPAEG--PKYM-AVAGEQ 179
P+ + V+T + C +F + D P G P+ + AV
Sbjct: 130 ------RPQPWLLHLI--DVNTMNFC-------AFAACVPTDPPPAGDDPELLLAVPNTL 174
Query: 180 LSE-VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 238
SE ++I+ L T TR H G GM MA+ A +P + +LAGYE
Sbjct: 175 ASESIDIYHLPTQ---TRRHTVKSPGQ-------NGMVMAL-ALVPQGDS--LTLLAGYE 221
Query: 239 DGSILVWDIRNP-GIPLTAMKV--HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG 295
+G + G T + H +PVL L + ++ AD + + + G
Sbjct: 222 NGVTTAMHLSAASGTWNTTYRTQPHSQPVLSLDVSPDGLSFVTSSADAVVARHPVPPPAG 281
Query: 296 SCVIK---KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352
V++ K +N + G R D ++ AT GWD VR+Y+ + +A+LK+H C
Sbjct: 282 MEVLEQPLKVVNTKHSGQQSLRFRDDGRVFATGGWDAMVRVYSGKTMKEVAVLKWHEVGC 341
Query: 353 NAVSFSSDCK 362
AV+F+S K
Sbjct: 342 YAVAFASALK 351
|
Component of the ASTRA complex involved in chromatin remodeling. Verticillium albo-atrum (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (taxid: 526221) |
| >sp|A7ESR0|ASA1_SCLS1 ASTRA-associated protein 1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=asa1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 99/407 (24%), Positives = 158/407 (38%), Gaps = 82/407 (20%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MS P P P +LRGH + F + L G G + +W R V+ W
Sbjct: 1 MSIPPGAPQPSYILRGHATPIHVAKFIRGNTRLITGDAEGWVVLWSLETRRGVAV-W--- 56
Query: 61 AAHGIVSVATGPSIGLNK-VISQGRDGTVKCWDI---ENGGLSS------------NPSL 104
AHG V + G + +++ G+D + W + E +S P +
Sbjct: 57 RAHGGVLLGVGEWGERGEGIVTHGKDNKLIIWKLPPSEEDSMSKILPVDTVSEERRKPWI 116
Query: 105 --TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEII 162
+ N+ +FC +A E E G+
Sbjct: 117 LHILDVNTMNFCA-------FAMCPIVTEVNPAEHEERGK-------------------- 149
Query: 163 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR---GMCMAV 219
DD G ++ + EQL + + ++ T+E H + N S G GM M++
Sbjct: 150 DDEAQLGMEWEGESEEQLL-IAVPNILTSESIDIFHIPTLHRIHNIPSPGPDKPGMIMSL 208
Query: 220 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI----------PLTAMKVHLEPVLCLSI 269
+ ++ + V++GYEDGS+ V+ + +P + K H++P+L LS+
Sbjct: 209 SLFFHPITK-CLTVISGYEDGSVSVFALSSPSTRTPSSPEQWNTIYQSKSHIQPILSLSV 267
Query: 270 DESCNGG--ISGGADQKIVLYNLDHSTGSCVIK----------------KEINLERPGIS 311
D + I+ GAD +I+ Y + +T K + G
Sbjct: 268 DPGRDRKFFITSGADDRIIKYLIPATTTPFSPSKSTSKSTTISSTKYEPKILKSAHAGQQ 327
Query: 312 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 358
G IR D KIA TAGWD R R+Y K LA+LK+H C AV+ +
Sbjct: 328 GIEIRNDGKIAVTAGWDGRARVYEVTKMRELAVLKWHKEGCFAVAVA 374
|
Component of the ASTRA complex involved in chromatin remodeling. Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (taxid: 665079) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 383 | ||||||
| 359492190 | 382 | PREDICTED: guanine nucleotide-binding pr | 0.992 | 0.994 | 0.715 | 1e-158 | |
| 224104761 | 387 | predicted protein [Populus trichocarpa] | 0.994 | 0.984 | 0.702 | 1e-156 | |
| 255562629 | 441 | conserved hypothetical protein [Ricinus | 0.981 | 0.852 | 0.678 | 1e-146 | |
| 297799000 | 386 | EMB2757 [Arabidopsis lyrata subsp. lyrat | 0.986 | 0.979 | 0.653 | 1e-145 | |
| 42567255 | 386 | transducin/WD40 domain-containing protei | 0.994 | 0.987 | 0.651 | 1e-144 | |
| 356517988 | 387 | PREDICTED: ASTRA-associated protein 1-li | 0.992 | 0.981 | 0.642 | 1e-142 | |
| 449449559 | 383 | PREDICTED: guanine nucleotide-binding pr | 0.992 | 0.992 | 0.649 | 1e-140 | |
| 323511860 | 375 | decreased size exclusion limit 1 [Nicoti | 0.960 | 0.981 | 0.660 | 1e-139 | |
| 357466903 | 364 | Guanine nucleotide-binding protein subun | 0.945 | 0.994 | 0.635 | 1e-137 | |
| 242091842 | 402 | hypothetical protein SORBIDRAFT_10g00205 | 0.971 | 0.925 | 0.540 | 1e-118 |
| >gi|359492190|ref|XP_002278969.2| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Vitis vinifera] gi|302142603|emb|CBI19806.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 274/383 (71%), Positives = 320/383 (83%), Gaps = 3/383 (0%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKRPPP DPVAVLRGHRASVTDVCFH + ILF G++ GELRIWDTVQHRTVSS+WVHS
Sbjct: 1 MSKRPPP-DPVAVLRGHRASVTDVCFHPSNSILFTGSSDGELRIWDTVQHRTVSSAWVHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
AAHG+V VA P IG NK++SQGRDGTVK WDIE GGLS +PSLTIKTN+YHFCKLSL+K
Sbjct: 60 AAHGVVCVAASPLIGDNKLVSQGRDGTVKYWDIEEGGLSRSPSLTIKTNAYHFCKLSLMK 119
Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDS--KESNRSFEIIDDVPAEGPKYMAVAGE 178
+P A A+QA PK ++ +V +TVD + L DS K E D AEGPKY+A+AGE
Sbjct: 120 KPCACARQAEGPKHYHDMDVKDTVDAEMLNDSSGKAQESLTECSDAAHAEGPKYVAIAGE 179
Query: 179 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 238
Q SEVEIWDLNTAER +L Q GGS N+ +K RGMCMAVQA+LPS+SQGF+N+L+GYE
Sbjct: 180 QSSEVEIWDLNTAERIAQLPQKCLGGSSNYCTKSRGMCMAVQAFLPSESQGFLNILSGYE 239
Query: 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV 298
DG+++ WDIRNPGIP+T++K HLEP+L + +D SC+GGISG AD KIV++ LD+ GSCV
Sbjct: 240 DGTMVWWDIRNPGIPITSVKFHLEPILSICLDGSCSGGISGAADNKIVIFGLDNPMGSCV 299
Query: 299 IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 358
+KKEI+LERPGISGTS+R D KIAATAGWD R+RI+NYRKGSALAILKYH ATCNAVSFS
Sbjct: 300 VKKEISLERPGISGTSVRSDGKIAATAGWDHRIRIFNYRKGSALAILKYHRATCNAVSFS 359
Query: 359 SDCKLMASASEDSTVALWELYPP 381
DCKLMAS+SEDSTVALWELYPP
Sbjct: 360 PDCKLMASSSEDSTVALWELYPP 382
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224104761|ref|XP_002313556.1| predicted protein [Populus trichocarpa] gi|222849964|gb|EEE87511.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust.
Identities = 272/387 (70%), Positives = 318/387 (82%), Gaps = 6/387 (1%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKRP P DPVAVLRGHRASV D FH +KP+LF G+T GELRIWDTVQHRTVSSS VHS
Sbjct: 1 MSKRPAP-DPVAVLRGHRASVMDASFHPSKPLLFTGSTDGELRIWDTVQHRTVSSSRVHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
AAHGI+SVA P IG NKVISQGRDGTVKCWDI+NGGLS PSLTIKTN+YHFCKLSLVK
Sbjct: 60 AAHGIISVAASPLIGDNKVISQGRDGTVKCWDIDNGGLSREPSLTIKTNAYHFCKLSLVK 119
Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEI-----IDDVPAEGPKYMAV 175
+P ++ +Q P +E++ ETVDT+SL + + + ++D+ A+G KY+AV
Sbjct: 120 KPNSSVRQGEGPNYKHEKDDTETVDTNSLGNKGINYEEDPVECSNPLEDLHADGSKYIAV 179
Query: 176 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 235
AGEQ SEVEIWDLNTAER RL Q+ GGS N S+ RGMCMAVQA+LPS+SQGF+ +L
Sbjct: 180 AGEQSSEVEIWDLNTAERLARLPQSCIGGSSNISTNKRGMCMAVQAFLPSESQGFLYILV 239
Query: 236 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG 295
GYEDGS+L+WD+RNPG + ++K H EPVL L +D C+GGISG AD KI LY+LD S G
Sbjct: 240 GYEDGSMLLWDMRNPGAFVNSVKFHTEPVLSLCVDGLCSGGISGAADDKIALYSLDVSVG 299
Query: 296 SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAV 355
SCV+KKEI+LERPG+SGTSIRPDSKIAATAGWD RVRIYNYRKG+ALAILKYHHATCNAV
Sbjct: 300 SCVMKKEISLERPGVSGTSIRPDSKIAATAGWDHRVRIYNYRKGNALAILKYHHATCNAV 359
Query: 356 SFSSDCKLMASASEDSTVALWELYPPH 382
++S+DCKLMASASED+T+ALWELYPP
Sbjct: 360 TYSTDCKLMASASEDTTIALWELYPPQ 386
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562629|ref|XP_002522320.1| conserved hypothetical protein [Ricinus communis] gi|223538398|gb|EEF40004.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/382 (67%), Positives = 303/382 (79%), Gaps = 6/382 (1%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
M KRPPPPDP+ VLRGHRASVTD CFH +KPILF G+ GELRIWDTVQHRT+SS+WVHS
Sbjct: 1 MIKRPPPPDPITVLRGHRASVTDACFHPSKPILFTGSADGELRIWDTVQHRTISSAWVHS 60
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
AAHGI+S+A+ G +KVISQG+DGTVK WDI+ GGLS P +TI+TNSYHFCKLSLVK
Sbjct: 61 AAHGIISIASCNLNGNDKVISQGKDGTVKLWDIQEGGLSRVPVVTIRTNSYHFCKLSLVK 120
Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKE------SNRSFEIIDDVPAEGPKYMA 174
+P P +E E ETVDT+ D + S S + +D + K +A
Sbjct: 121 KPGDKVVHDKGPNHQHEIEALETVDTNVSYDRENRHNENSSKCSSDSEEDKHIDVLKCVA 180
Query: 175 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 234
+AGEQ SEVEIWDLNTAER +RL QN GGS + +++ RGMCMAVQA+LPS+SQGF+N+L
Sbjct: 181 IAGEQSSEVEIWDLNTAERISRLAQNCSGGSSSITTQKRGMCMAVQAFLPSESQGFLNLL 240
Query: 235 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 294
AGYEDGS+L WD+R+PG+PLT++K H EPVL L ID C GGISG AD KIVL++LD+
Sbjct: 241 AGYEDGSMLWWDMRSPGVPLTSVKFHTEPVLSLCIDGWCTGGISGAADDKIVLFSLDNCL 300
Query: 295 GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNA 354
GSCVIKKEI LERPGISGTSIR D KIAA AGWD RVRIYNYRKG+ALAILKYHHATCNA
Sbjct: 301 GSCVIKKEITLERPGISGTSIRADGKIAAAAGWDHRVRIYNYRKGNALAILKYHHATCNA 360
Query: 355 VSFSSDCKLMASASEDSTVALW 376
VS+SSDCKL+ASASED+TVALW
Sbjct: 361 VSYSSDCKLLASASEDTTVALW 382
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799000|ref|XP_002867384.1| EMB2757 [Arabidopsis lyrata subsp. lyrata] gi|297313220|gb|EFH43643.1| EMB2757 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 253/387 (65%), Positives = 312/387 (80%), Gaps = 9/387 (2%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKRPPP DPVAVLRGHR SV DV FH +KP+LF G+ GELRIWDT+QHR VSS+W HS
Sbjct: 1 MSKRPPP-DPVAVLRGHRHSVMDVSFHPSKPLLFTGSADGELRIWDTIQHRAVSSAWAHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
A+G+++VA P +G NK+ISQGRDGTVKCWDIE+GGLS +P L ++T++YHFCK SLVK
Sbjct: 60 RANGVLAVAASPWLGENKIISQGRDGTVKCWDIEDGGLSRDPLLILETSAYHFCKFSLVK 119
Query: 121 EPYANAKQA-NEPKDCYEREVGETVDTDSLCDSKESNRSFE----IIDDVPAEGPKYMAV 175
+P + ++A + ++C E++ G DT S+ +S RS E + D AEG ++AV
Sbjct: 120 KPKTSLQEAVSHLQNCDEQDDG---DTRSVQLGDDSERSVEDSGLLQDGDHAEGTTFVAV 176
Query: 176 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 235
GEQ +EVEIWD+NT ++ +L Q+S SPN S+KGRGMCMAVQ + P +SQGF++VLA
Sbjct: 177 VGEQPTEVEIWDINTGDKIIQLPQSSLDESPNASTKGRGMCMAVQLFCPPESQGFLHVLA 236
Query: 236 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG 295
GYEDGS+L+WDIRN IPLT++K H EPVL LSI SC+GGISGGAD KIV+YNL+HS G
Sbjct: 237 GYEDGSMLLWDIRNAKIPLTSVKFHSEPVLSLSIASSCDGGISGGADDKIVMYNLNHSAG 296
Query: 296 SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAV 355
SC ++KEI LERPG+SGTSIRPD KIAATAGWD R+R+YNYRKG+ALAILKYH ATCNAV
Sbjct: 297 SCTMRKEITLERPGVSGTSIRPDGKIAATAGWDHRIRVYNYRKGNALAILKYHRATCNAV 356
Query: 356 SFSSDCKLMASASEDSTVALWELYPPH 382
S+S DC+LMASASED+TVALW+LYPPH
Sbjct: 357 SYSPDCELMASASEDATVALWKLYPPH 383
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42567255|ref|NP_194715.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|75674124|dbj|BAE44475.1| WD repeat protein [Arabidopsis thaliana] gi|332660286|gb|AEE85686.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust.
Identities = 250/384 (65%), Positives = 308/384 (80%), Gaps = 3/384 (0%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKRPPP DPVAVLRGHR SV DV FH +K +LF G+ GELRIWDT+QHR VSS+W HS
Sbjct: 1 MSKRPPP-DPVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHRAVSSAWAHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
A+G+++VA P +G +K+ISQGRDGTVKCWDIE+GGLS +P L ++T +YHFCK SLVK
Sbjct: 60 RANGVLAVAASPWLGEDKIISQGRDGTVKCWDIEDGGLSRDPLLILETCAYHFCKFSLVK 119
Query: 121 EPYANAKQA-NEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP-AEGPKYMAVAGE 178
+P + ++A + + C E++ G+T + DS+ S ++ D AEG ++AV GE
Sbjct: 120 KPKNSLQEAESHSRGCDEQDGGDTCNVQIADDSERSEEDSGLLQDKDHAEGTTFVAVVGE 179
Query: 179 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 238
Q +EVEIWDLNT ++ +L Q+S SPN S+KGRGMCMAVQ + P +SQGF++VLAGYE
Sbjct: 180 QPTEVEIWDLNTGDKIIQLPQSSPDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYE 239
Query: 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV 298
DGSIL+WDIRN IPLT++K H EPVL LS+ SC+GGISGGAD KIV+YNL+HSTGSC
Sbjct: 240 DGSILLWDIRNAKIPLTSVKFHSEPVLSLSVASSCDGGISGGADDKIVMYNLNHSTGSCT 299
Query: 299 IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 358
I+KEI LERPG+SGTSIR D KIAATAGWD R+R+YNYRKG+ALAILKYH ATCNAVS+S
Sbjct: 300 IRKEITLERPGVSGTSIRVDGKIAATAGWDHRIRVYNYRKGNALAILKYHRATCNAVSYS 359
Query: 359 SDCKLMASASEDSTVALWELYPPH 382
DC+LMASASED+TVALW+LYPPH
Sbjct: 360 PDCELMASASEDATVALWKLYPPH 383
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517988|ref|XP_003527666.1| PREDICTED: ASTRA-associated protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 248/386 (64%), Positives = 312/386 (80%), Gaps = 6/386 (1%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MS+RPPP DPVAVLRGHRASVTD+ FH +KPILF+G+ GE+RIWDT+QHRTVSS+W+HS
Sbjct: 1 MSRRPPP-DPVAVLRGHRASVTDISFHPSKPILFSGSADGEVRIWDTLQHRTVSSAWLHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
AAHGIV+VA S+G NK +SQGRDGTVK W++ + GLS P LTIKTN+YHFCK S+VK
Sbjct: 60 AAHGIVAVAGSSSLGNNKFVSQGRDGTVKVWELGDAGLSRIPVLTIKTNTYHFCKFSMVK 119
Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKE---SNRSFE--IIDDVPAEGPKYMAV 175
+ +K+ +D Y E+G D + L D +E +N+S +++ EG +Y+A+
Sbjct: 120 KHSVWSKEGKASEDSYRSELGGVPDREILEDRREEAYTNQSCSESFGENMYNEGLQYVAL 179
Query: 176 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 235
+GE+ SEVEIWDL +AE+ +L ++ S + +KGRGMCMA+Q +LPS+SQGF+NVLA
Sbjct: 180 SGEKSSEVEIWDLKSAEKVVQLPSSNPSNSSSPCNKGRGMCMALQLFLPSESQGFLNVLA 239
Query: 236 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG 295
GYEDGS+L WD+RNPG+P+T++K H EPVL + D SC GGISG AD KIV+Y+LDHS+G
Sbjct: 240 GYEDGSMLWWDVRNPGVPVTSVKFHSEPVLSVCNDGSCKGGISGAADDKIVMYSLDHSSG 299
Query: 296 SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAV 355
+CV+KKEI+L+RPGISGTSIRPD KIAATAGWD R+RIYNYRKG+ALAILKYHH TCNAV
Sbjct: 300 TCVVKKEISLDRPGISGTSIRPDGKIAATAGWDHRLRIYNYRKGNALAILKYHHGTCNAV 359
Query: 356 SFSSDCKLMASASEDSTVALWELYPP 381
++SSDCKLMASASED+TV LWELYPP
Sbjct: 360 TYSSDCKLMASASEDTTVGLWELYPP 385
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449559|ref|XP_004142532.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Cucumis sativus] gi|449511779|ref|XP_004164051.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 248/382 (64%), Positives = 298/382 (78%), Gaps = 2/382 (0%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKRPPP DPVAVLRGHRASV DV FH ++P+LF+G+ GELRIWDT Q+RTVSS+WVHS
Sbjct: 1 MSKRPPP-DPVAVLRGHRASVMDVSFHPSEPLLFSGSADGELRIWDTAQNRTVSSAWVHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
AAHGI+SVA SIG N+V+SQGRDGTVKCWDI++ LS P+++IKTN+YHFCKLSLVK
Sbjct: 60 AAHGIISVACSRSIGTNRVVSQGRDGTVKCWDIDDRTLSRVPTVSIKTNAYHFCKLSLVK 119
Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCD-SKESNRSFEIIDDVPAEGPKYMAVAGEQ 179
+P + + P +R+ T C K S E +G KY+AV+GEQ
Sbjct: 120 QPSDFSSHNDGPNCINDRDEKPVEATILGCSGDKAQGISTEHSYRSEVDGLKYVAVSGEQ 179
Query: 180 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 239
SEVEIWDLN ER RL NS G PN S+K RG+CMAVQA+LPSKSQGF+NVL+GYED
Sbjct: 180 SSEVEIWDLNAGERLLRLPPNSEGDCPNISTKDRGLCMAVQAFLPSKSQGFLNVLSGYED 239
Query: 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI 299
GS+L WD+RNP +PL ++K H+EPVL + +D SC+G ISG AD+K+V+++LDHSTG+C++
Sbjct: 240 GSMLWWDLRNPRVPLASVKCHVEPVLSICVDGSCHGAISGAADEKVVMFSLDHSTGTCLV 299
Query: 300 KKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS 359
K+EI LERPGI+ SIR D KI ATAGWD RVRIYNYRKG+ LAILKYH A CNAVS+S
Sbjct: 300 KREITLERPGIAKVSIRSDDKIVATAGWDHRVRIYNYRKGNPLAILKYHQALCNAVSYSE 359
Query: 360 DCKLMASASEDSTVALWELYPP 381
DCKLMASASED TVALWELYPP
Sbjct: 360 DCKLMASASEDRTVALWELYPP 381
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|323511860|gb|ADX87418.1| decreased size exclusion limit 1 [Nicotiana benthamiana] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/386 (66%), Positives = 299/386 (77%), Gaps = 18/386 (4%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKRP P DPV+VLRGHRASV D+CFH + ILF+G+T GELRIW+TVQ+RTVSS+WVHS
Sbjct: 1 MSKRPAP-DPVSVLRGHRASVADICFHPSNSILFSGSTDGELRIWNTVQYRTVSSAWVHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
AAHGI+ VA P +G NKVISQGRDGTVKCWD GGLS P LTIKTNSYHFCKLS+ K
Sbjct: 60 AAHGIICVAASPVLGDNKVISQGRDGTVKCWDFGGGGLSRTPLLTIKTNSYHFCKLSIAK 119
Query: 121 EPYANAK----QANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVA 176
P K + NE D +RE TDS+ + E+I EGPKY+A+A
Sbjct: 120 SPSEAMKIDDLEVNEIVDGMQREEQGDQPTDSI-----KFKGKELI-----EGPKYVAIA 169
Query: 177 GEQLSEVEIWDLNTAERCTRLHQNSCGGSP-NFSSKGRGMCMAVQAYLPSKSQGFVNVLA 235
GEQ S VEIWD+NTAER +L +S GSP N + RGMCMAVQA+LPS+SQG ++++A
Sbjct: 170 GEQASVVEIWDVNTAERIAQLPHSS--GSPSNQTPNQRGMCMAVQAFLPSESQGLLSIMA 227
Query: 236 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG 295
GYEDGSI WD+RN G+PLT++K H EPVL L ID SC GG+SG AD+KI+++ LDHS G
Sbjct: 228 GYEDGSIAWWDLRNLGVPLTSVKFHSEPVLSLCIDGSCKGGLSGAADEKILMFALDHSMG 287
Query: 296 SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAV 355
SC+I+KEI LERPGI+GTSIRPD KIAATAGWD RVRIYNYRKG LAILKYH+ATCN V
Sbjct: 288 SCLIRKEIVLERPGIAGTSIRPDGKIAATAGWDHRVRIYNYRKGKPLAILKYHNATCNTV 347
Query: 356 SFSSDCKLMASASEDSTVALWELYPP 381
SFS+D KL+ASASED+TVALWELY P
Sbjct: 348 SFSADSKLLASASEDTTVALWELYLP 373
|
Source: Nicotiana benthamiana Species: Nicotiana benthamiana Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466903|ref|XP_003603736.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula] gi|355492784|gb|AES73987.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/381 (63%), Positives = 295/381 (77%), Gaps = 19/381 (4%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKR P DPVAVLRGHRASVTD+CFH +KPILF+G+ GELRIWDT + +T+SS+W+HS
Sbjct: 1 MSKRAAP-DPVAVLRGHRASVTDICFHPSKPILFSGSADGELRIWDTFRRQTLSSAWLHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
AAHGI+++A+ S+G NK +SQGRDGTVK WD ++ GLS PS+TIKTNSYHFCK SL K
Sbjct: 60 AAHGILALASSSSLGTNKFVSQGRDGTVKVWDFDDTGLSRIPSVTIKTNSYHFCKFSLAK 119
Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQL 180
+K KDC E E V T+ C +EG Y+A++GE
Sbjct: 120 NQSTGSKAGEASKDCLETE---EVHTNQSCSES-------------SEGLSYVALSGENS 163
Query: 181 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 240
SEVEIWDL +AER RL + S + SSKG MCMA+Q +PS+SQGF+NV+AGYEDG
Sbjct: 164 SEVEIWDLKSAERFARLPSSIGSNSSSVSSKG--MCMALQLCVPSESQGFLNVMAGYEDG 221
Query: 241 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK 300
++L WD+RNPG+P++++K H EPVL + ID SC GGISG AD++IV+Y+LDHS+G+CV+
Sbjct: 222 TMLWWDVRNPGVPVSSVKFHSEPVLSIGIDGSCKGGISGAADERIVMYSLDHSSGTCVVN 281
Query: 301 KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSD 360
KEI LERPGISGTSIRPD KIAATAGWD R+RIYNYRKG+ALA+LKYHHATCNAV+FSSD
Sbjct: 282 KEITLERPGISGTSIRPDGKIAATAGWDHRIRIYNYRKGNALAVLKYHHATCNAVNFSSD 341
Query: 361 CKLMASASEDSTVALWELYPP 381
CKLMASAS D+TVALWELYPP
Sbjct: 342 CKLMASASADTTVALWELYPP 362
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242091842|ref|XP_002436411.1| hypothetical protein SORBIDRAFT_10g002050 [Sorghum bicolor] gi|241914634|gb|EER87778.1| hypothetical protein SORBIDRAFT_10g002050 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/374 (54%), Positives = 267/374 (71%), Gaps = 2/374 (0%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
DPVAVLRGHRA+V D CFH + P+LF+G GELR WDT HRT SS W H+ + G+ SV
Sbjct: 14 DPVAVLRGHRAAVNDACFHPSLPLLFSGAADGELRAWDTASHRTASSVWAHAGSAGVYSV 73
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
A G +G NK+ISQGRDGT KCW IE GLS P T+KT++YHFCK+SLVK +A +
Sbjct: 74 AAGAGLG-NKIISQGRDGTCKCWVIEEAGLSRKPLFTVKTSTYHFCKMSLVKSSLTHATK 132
Query: 129 ANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD-VPAEGPKYMAVAGEQLSEVEIWD 187
+ + E ++ C + + D + G +A+AGE+ S+VE+WD
Sbjct: 133 SGSTCSASDVEPKRLSSENTECHGVNPAVAPQEHDQCTTSNGHNMLAIAGEESSQVELWD 192
Query: 188 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247
+ +A + L Q + N +K +G+CMAVQA++P +S G+VN+L+ YEDGS L WD+
Sbjct: 193 IASARKIVTLPQTCSTDTANHPTKKKGLCMAVQAFIPHESAGYVNILSSYEDGSTLWWDV 252
Query: 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 307
R PG+PL+++K H E L ++ID CNGGISGGAD K+V++ LDH G+ +++KEI LER
Sbjct: 253 RKPGLPLSSVKYHSESALSIAIDGFCNGGISGGADDKVVMFTLDHPKGAFILRKEIELER 312
Query: 308 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASA 367
PGI+GT+IRPD+KIAATAGWD R+R+YNY KG+ALA+LKYH A+CNAV+FSSDCKLMAS
Sbjct: 313 PGIAGTAIRPDNKIAATAGWDHRIRVYNYNKGNALAVLKYHSASCNAVTFSSDCKLMASC 372
Query: 368 SEDSTVALWELYPP 381
S D+TVALW+LYPP
Sbjct: 373 SADTTVALWDLYPP 386
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 383 | ||||||
| TAIR|locus:2123869 | 386 | EMB2757 "AT4G29860" [Arabidops | 0.994 | 0.987 | 0.651 | 4.1e-136 | |
| DICTYBASE|DDB_G0289181 | 359 | gnb1l "guanine nucleotide-bind | 0.503 | 0.537 | 0.373 | 2.9e-48 | |
| ZFIN|ZDB-GENE-050320-77 | 323 | gnb1l "guanine nucleotide bind | 0.420 | 0.498 | 0.352 | 2.8e-40 | |
| UNIPROTKB|F1NF00 | 328 | GNB1L "Uncharacterized protein | 0.788 | 0.920 | 0.296 | 2.1e-29 | |
| UNIPROTKB|Q9BYB4 | 327 | GNB1L "Guanine nucleotide-bind | 0.610 | 0.715 | 0.335 | 3.4e-29 | |
| UNIPROTKB|F1RK57 | 293 | GNB1L "Uncharacterized protein | 0.540 | 0.706 | 0.336 | 3.1e-28 | |
| MGI|MGI:1338057 | 326 | Gnb1l "guanine nucleotide bind | 0.511 | 0.601 | 0.355 | 6.4e-28 | |
| UNIPROTKB|F1MBU4 | 321 | GNB1L "Uncharacterized protein | 0.530 | 0.632 | 0.357 | 6.4e-28 | |
| RGD|1594165 | 326 | Gnb1l "guanine nucleotide bind | 0.511 | 0.601 | 0.336 | 4.5e-27 | |
| UNIPROTKB|A4RJA0 | 469 | asa1 "ASTRA-associated protein | 0.154 | 0.125 | 0.474 | 1.2e-17 |
| TAIR|locus:2123869 EMB2757 "AT4G29860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
Identities = 250/384 (65%), Positives = 308/384 (80%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKRPPP DPVAVLRGHR SV DV FH +K +LF G+ GELRIWDT+QHR VSS+W HS
Sbjct: 1 MSKRPPP-DPVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHRAVSSAWAHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
A+G+++VA P +G +K+ISQGRDGTVKCWDIE+GGLS +P L ++T +YHFCK SLVK
Sbjct: 60 RANGVLAVAASPWLGEDKIISQGRDGTVKCWDIEDGGLSRDPLLILETCAYHFCKFSLVK 119
Query: 121 EPYANAKQA-NEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP-AEGPKYMAVAGE 178
+P + ++A + + C E++ G+T + DS+ S ++ D AEG ++AV GE
Sbjct: 120 KPKNSLQEAESHSRGCDEQDGGDTCNVQIADDSERSEEDSGLLQDKDHAEGTTFVAVVGE 179
Query: 179 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 238
Q +EVEIWDLNT ++ +L Q+S SPN S+KGRGMCMAVQ + P +SQGF++VLAGYE
Sbjct: 180 QPTEVEIWDLNTGDKIIQLPQSSPDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYE 239
Query: 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV 298
DGSIL+WDIRN IPLT++K H EPVL LS+ SC+GGISGGAD KIV+YNL+HSTGSC
Sbjct: 240 DGSILLWDIRNAKIPLTSVKFHSEPVLSLSVASSCDGGISGGADDKIVMYNLNHSTGSCT 299
Query: 299 IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 358
I+KEI LERPG+SGTSIR D KIAATAGWD R+R+YNYRKG+ALAILKYH ATCNAVS+S
Sbjct: 300 IRKEITLERPGVSGTSIRVDGKIAATAGWDHRIRVYNYRKGNALAILKYHRATCNAVSYS 359
Query: 359 SDCKLMASASEDSTVALWELYPPH 382
DC+LMASASED+TVALW+LYPPH
Sbjct: 360 PDCELMASASEDATVALWKLYPPH 383
|
|
| DICTYBASE|DDB_G0289181 gnb1l "guanine nucleotide-binding protein subunit beta-like protein 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 77/206 (37%), Positives = 122/206 (59%)
Query: 181 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK-------SQGFVNV 233
S+VEIWDL + +L N+ K G+ M+++ Y ++ S + +
Sbjct: 156 SQVEIWDLKNKQVINKLKPNN----QQLFEK-LGLPMSLKLYYENENNDNSNQSNDQIRL 210
Query: 234 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 293
GYE+G +L+WD+RN IPL + K+H EP+L ++ + GISG D I+ +N+++
Sbjct: 211 CTGYENGELLIWDLRNTSIPLVSSKLHNEPILSFALSNNSTKGISGSGDTNIIEFNINYE 270
Query: 294 TGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN 353
+ I K L GIS IR D KI ATAGWD+R+RI+N++K + LAILKYH +
Sbjct: 271 SKQFNITKTHKLNNGGISEIKIRNDEKIYATAGWDKRIRIFNFKKQTPLAILKYHTESVY 330
Query: 354 AVSFSSDCKLMASASEDSTVALWELY 379
++ F+S+ ++AS S+D +ALW++Y
Sbjct: 331 SIDFNSN-NILASGSKDCKIALWDIY 355
|
|
| ZFIN|ZDB-GENE-050320-77 gnb1l "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 284 (105.0 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 60/170 (35%), Positives = 101/170 (59%)
Query: 214 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC 273
GM M+++ + G V + AGYEDGS+++WD+ + P + +KVH EPV+ L +D
Sbjct: 156 GMLMSMKMW--QADSGPV-LCAGYEDGSVVLWDVSHRR-PFSLLKVHPEPVMSLDVDVCR 211
Query: 274 NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 333
GISG ++ + + LD+ S + I + PG+S IR D KI A+AGWD +R+
Sbjct: 212 QKGISGSSENILQSWRLDNQQ-SLQMHDSIQMTNPGVSQLRIRADGKILASAGWDNNIRV 270
Query: 334 YNYRKGSALAILKYHHATCNAVSFSSDC----KLMASASEDSTVALWELY 379
+ ++K LA+L++H N+V+FS +L+A+ S+D +++W +Y
Sbjct: 271 FGWKKLKPLAVLQHHTDMVNSVAFSDHQDPTQRLLAAGSKDQRISVWSIY 320
|
|
| UNIPROTKB|F1NF00 GNB1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 97/327 (29%), Positives = 165/327 (50%)
Query: 60 SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
+A H + G + + S +G + W+++ + + +L C L +
Sbjct: 17 AAVHALHFSCGGGEPDIPVLFSGSENGFIHVWNLKTHRVDA--ALDGHGRK-SVCGLKTM 73
Query: 120 KEPYANAKQANEPKDC-YEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGE 178
Q + + C ++ G T TDS+ ++ AEG MA A +
Sbjct: 74 DGKERLLSQGRDQRICLWDLAEGRTSVTDSVFTENVGFCRCSLLK--VAEGRWLMATAAK 131
Query: 179 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS-KSQGFVNVLAGY 237
L EV++ +L + + C P +K GM M ++ + S SQ ++LAGY
Sbjct: 132 ALEEVQVLELPSKT-------SVCTLKPEVGAK-LGMPMCLKLWQGSCGSQP--SLLAGY 181
Query: 238 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC 297
EDGS+L+W++ + G L+ + H EPV+ L D GISG +++ + +++L+ +
Sbjct: 182 EDGSVLLWNL-STGKVLSQLICHQEPVMSLDFDSEKAKGISGSSEKVLSIWSLNEQQ-NL 239
Query: 298 VIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSF 357
++K L GIS +IRPD KI ATAGWD R+RI+ ++K LA+L YH AT ++VSF
Sbjct: 240 QVQKTHRLVNAGISDITIRPDKKILATAGWDHRIRIFGWKKLKPLAVLDYHTATVHSVSF 299
Query: 358 S-----SDCKLMASASEDSTVALWELY 379
S SD +L+A+ ++D +++W +Y
Sbjct: 300 SDHKSPSD-RLLAAGAKDHRISIWSIY 325
|
|
| UNIPROTKB|Q9BYB4 GNB1L "Guanine nucleotide-binding protein subunit beta-like protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 87/259 (33%), Positives = 140/259 (54%)
Query: 128 QANEPKDC-YEREVGETVDTDSLC-DSKESNRSFEIIDDVPAEG-PKY-MAVAGEQLSEV 183
Q + K C ++ G + DS+C +S RS + A G P++ +AV G EV
Sbjct: 86 QGRDLKLCLWDLAEGRSAVVDSVCLESVGFCRS-----SILAGGQPRWTLAVPGRGSDEV 140
Query: 184 EIWDLNTAERCTRLHQNSCGGSPNFSSK-GRGMCMAV-QAYLPSKSQGFVNVLAGYEDGS 241
+I ++ + + C P +K G MC+ + QA S+ +LAGYEDGS
Sbjct: 141 QILEMPSKT-------SVCALKPKADAKLGMPMCLRLWQADCSSRPL----LLAGYEDGS 189
Query: 242 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK 301
+++WD+ + + + H EPV+ L D GISG A + + +++LD + ++
Sbjct: 190 VVLWDVSEQKV-CSRIACHEEPVMDLDFDSQKARGISGSAGKALAVWSLDWQQ-ALQVRG 247
Query: 302 EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDC 361
L PGI+ +IRPD KI ATAGWD R+R++++R LA+L +H A V+F++D
Sbjct: 248 THELTNPGIAEVTIRPDRKILATAGWDHRIRVFHWRTMQPLAVLAFHSAAVQCVAFTAD- 306
Query: 362 KLMASASEDSTVALWELYP 380
L+A+ S+D ++LW LYP
Sbjct: 307 GLLAAGSKDQRISLWSLYP 325
|
|
| UNIPROTKB|F1RK57 GNB1L "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 74/220 (33%), Positives = 122/220 (55%)
Query: 168 EGPKYMAVAGEQLSEVEIWDL----NTAERCTRLHQ-NSCGGSPNFSSKGRGMCMAVQAY 222
+GP+ ++ G L ++ +WDL NT L C GS + R M +AV
Sbjct: 78 QGPQLLS-QGRDL-KLCLWDLAEGRNTVVDSVHLESVGFCRGSILAGGQPRWM-LAVPGS 134
Query: 223 LPSKSQGFVN--VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG 280
++ +LAGYEDGS+ +WD+ + + + H EPV+ L +D G+SG
Sbjct: 135 GSDEANSSPRPLLLAGYEDGSVALWDVSEQKV-CSRIACHTEPVMGLDVDSQKARGVSGS 193
Query: 281 ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 340
A++ + ++++D + +++ L PGI+ IRPD KI ATAGWD RVR++ ++
Sbjct: 194 AEKALAVWSVDEQQ-ALQVRRTHQLTNPGIADIKIRPDRKILATAGWDHRVRVFLWQTMK 252
Query: 341 ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380
LA+L +H AT + V+F++D L+A+ S D +++W LYP
Sbjct: 253 PLAVLAFHSATVHCVAFAAD-SLLAAGSGDHRISIWSLYP 291
|
|
| MGI|MGI:1338057 Gnb1l "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 74/208 (35%), Positives = 118/208 (56%)
Query: 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 232
+AV G+ EV+I ++ + + C P ++ GM M + + + S +
Sbjct: 129 LAVPGKGSDEVQILEMPSKT-------SVCTLKPEADARP-GMPMCLGLWQTNSSLRPL- 179
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
+LAGYEDGS+ +WDI + + + H EPV+ L D GISG A + + +++LD
Sbjct: 180 LLAGYEDGSVTLWDISERKV-CSQITCHEEPVMGLDFDSQKAKGISGSAGKVLAVWSLDD 238
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352
S +KK L PGI+ +IRPD KI ATAGWD R+R++++R LA+L +H A
Sbjct: 239 QQ-SLQVKKTHELTNPGIAEVTIRPDHKILATAGWDHRIRVFHWRTMKPLAVLAFHSAPV 297
Query: 353 NAVSFSSDCKLMASASEDSTVALWELYP 380
V+F++D L+A+ S+D +++W LYP
Sbjct: 298 YCVAFAAD-GLLAAGSKDQRISIWSLYP 324
|
|
| UNIPROTKB|F1MBU4 GNB1L "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 79/221 (35%), Positives = 127/221 (57%)
Query: 165 VPAEGPK--YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 222
V AEGP+ +AV G EV++ +L + T + SC P ++ GM M +Q +
Sbjct: 114 VLAEGPQRWMLAVPGRGSDEVQVLELPSK---TSV---SCL-KPEAGAR-LGMPMCLQLW 165
Query: 223 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD 282
S + +LAGYEDGS+ +WD+ + + + H EPV+ L++D G+SG A+
Sbjct: 166 QAESSPRPL-LLAGYEDGSLALWDVSARKV-CSRVACHSEPVMALALDPRRARGVSGSAE 223
Query: 283 QKIVLYNLDHSTGSCVIKKE--INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 340
+ + +++L+ G +++ + PGI IRPDSKI ATAGWD RVR++ +R
Sbjct: 224 KVLAVWSLE---GQQALQERGGHSAVSPGIPSLKIRPDSKILATAGWDHRVRVFQWRTMK 280
Query: 341 ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381
LA+L +H AT + V+F++ L+A+ S D +++W LYPP
Sbjct: 281 PLAVLAFHSATVHCVAFNTT-GLLAAGSGDQRISVWSLYPP 320
|
|
| RGD|1594165 Gnb1l "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 70/208 (33%), Positives = 119/208 (57%)
Query: 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 232
+AV G+ EV+I ++ + + C P +K GM M + + + S +
Sbjct: 129 LAVPGKGSDEVQILEMPSKT-------SVCTLKPEADAKP-GMPMCLGLWQTNSSLRPL- 179
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292
+LAGYEDGS+ +WD+ + + + H EPV+ L D G+SG A + + +++LD
Sbjct: 180 LLAGYEDGSVTLWDVSERKV-CSQITCHEEPVMGLDFDSQKAKGVSGSAGKVLAVWSLDD 238
Query: 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352
S +KK L PGI+ ++RPD ++ ATAGWD R+R++++R LA+L +H A
Sbjct: 239 QQ-SLQVKKTHELINPGIAEVTLRPDHRLFATAGWDHRIRVFHWRTIKPLAVLAFHSAPV 297
Query: 353 NAVSFSSDCKLMASASEDSTVALWELYP 380
+ V+F++D L+A+ S+D +++W LYP
Sbjct: 298 HCVAFAAD-GLLAAGSKDQRISVWSLYP 324
|
|
| UNIPROTKB|A4RJA0 asa1 "ASTRA-associated protein 1" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 145 (56.1 bits), Expect = 1.2e-17, Sum P(4) = 1.2e-17
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 301 KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS 359
K +N + G G IR D +I ATAGWD RVR+Y+ + LA+LK+H C AV+FS+
Sbjct: 357 KVVNTKHAGQQGLRIRSDGRIFATAGWDSRVRVYSCKTMKELAVLKWHQVGCFAVAFST 415
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00014488001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (380 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00032589001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (331 aa) | • | 0.499 | |||||||
 | GSVIVG00003077001 | SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (350 aa) | • | 0.499 | |||||||
 | GSVIVG00025117001 | SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (350 aa) | • | 0.495 | |||||||
 | GSVIVG00014906001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (390 aa) | • | 0.495 | |||||||
 | GSVIVG00036459001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (441 aa) | • | 0.494 | |||||||
 | GSVIVG00015931001 | SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (414 aa) | • | 0.493 | |||||||
 | GSVIVG00023743001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (298 aa) | • | 0.492 | |||||||
 | GSVIVG00018848001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (339 aa) | • | 0.491 | |||||||
 | GSVIVG00003105001 | SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (328 aa) | • | 0.490 | |||||||
 | GSVIVG00010426001 | SubName- Full=Chromosome undetermined scaffold_261, whole genome shotgun sequence; Flags- Fragm [...] (130 aa) | • | 0.489 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 383 | |||
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-23 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-19 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-19 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 7e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-04 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.002 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 85/368 (23%), Positives = 149/368 (40%), Gaps = 32/368 (8%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG-P 72
LRGH S+T + F +L +G++ G +++WD + S + +A P
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
+ S DGTVK WD+ G T++ +S L+ + A ++
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGKLLASGSSLD 177
Query: 133 KDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 192
++ +L + S D G +A + + +WDL+T +
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD----GGLLIASGSSDGT-IRLWDLSTGK 232
Query: 193 RC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251
+ L +S +FS G + +G DG+I +WD+R+
Sbjct: 233 LLRSTLSGHSDSVVSSFSPDGS------------------LLASGSSDGTIRLWDLRSSS 274
Query: 252 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311
L + H VL ++ SG +D + L++L TG + + +S
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL--ETGKLLSSLTLKGHEGPVS 332
Query: 312 GTSIRPD-SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED 370
S PD S + + D +R+++ R G L L+ H+ +VSFS D ++++S S D
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE-GHSNVLSVSFSPDGRVVSSGSTD 391
Query: 371 STVALWEL 378
TV LW+L
Sbjct: 392 GTVRLWDL 399
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 3e-19
Identities = 76/368 (20%), Positives = 129/368 (35%), Gaps = 79/368 (21%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
L+GH VT V F +L G
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATG--------------------------------- 27
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA 129
DGT+K WD+E G L +L T S A+
Sbjct: 28 -------------SGDGTIKVWDLETGELLR--TLKGHTGPVRDVAASADGTYLASGSSD 72
Query: 130 NEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLN 189
+ ++ E GE V T L S D + + + +++WD+
Sbjct: 73 KTIR-LWDLETGECVRT--LTGHTSYVSSVAFSPD------GRILSSSSRDKTIKVWDVE 123
Query: 190 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249
T + T L ++ V + S FV + +DG+I +WD+R
Sbjct: 124 TGKCLTTLRGHTD---------------WVNSVAFSPDGTFV--ASSSQDGTIKLWDLRT 166
Query: 250 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 309
G + + H V ++ +S +D I L+ D STG C+ + G
Sbjct: 167 -GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW--DLSTGKCL--GTLRGHENG 221
Query: 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE 369
++ + PD + A+ D +R+++ R G + L H + ++++S D K +AS S
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281
Query: 370 DSTVALWE 377
D T+ +W+
Sbjct: 282 DGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 6e-19
Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 23/208 (11%)
Query: 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF 230
Y+A + +WDL T E L +A + P
Sbjct: 64 TYLASGSSD-KTIRLWDLETGECVRTLTG----------HTSYVSSVA---FSPDGRI-- 107
Query: 231 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 290
+ + D +I VWD+ G LT ++ H + V ++ S D I L++L
Sbjct: 108 --LSSSSRDKTIKVWDVET-GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164
Query: 291 DHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA 350
TG CV + ++ + PD + ++ D +++++ G L L+ H
Sbjct: 165 --RTGKCV--ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN 220
Query: 351 TCNAVSFSSDCKLMASASEDSTVALWEL 378
N+V+FS D L+AS SED T+ +W+L
Sbjct: 221 GVNSVAFSPDGYLLASGSEDGTIRVWDL 248
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 3e-18
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 9/148 (6%)
Query: 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG--ISGGADQKIVLYNL 290
+ G DG+I VWD+ G L +K H PV ++ S +G SG +D+ I L++L
Sbjct: 24 LATGSGDGTIKVWDL-ETGELLRTLKGHTGPVRDVAA--SADGTYLASGSSDKTIRLWDL 80
Query: 291 DHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA 350
TG CV + + +S + PD +I +++ D+ +++++ G L L+ H
Sbjct: 81 --ETGECV--RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD 136
Query: 351 TCNAVSFSSDCKLMASASEDSTVALWEL 378
N+V+FS D +AS+S+D T+ LW+L
Sbjct: 137 WVNSVAFSPDGTFVASSSQDGTIKLWDL 164
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 6e-18
Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 23/209 (11%)
Query: 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG 229
K +A +++WDL T E L ++ A YL
Sbjct: 21 GKLLATGSGD-GTIKVWDLETGELLRTLKGHT-------GPVRDVAASADGTYL------ 66
Query: 230 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 289
+G D +I +WD+ G + + H V ++ S D+ I +++
Sbjct: 67 ----ASGSSDKTIRLWDLET-GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121
Query: 290 LDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH 349
++ TG C+ + ++ + PD A++ D +++++ R G +A L H
Sbjct: 122 VE--TGKCL--TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT 177
Query: 350 ATCNAVSFSSDCKLMASASEDSTVALWEL 378
N+V+FS D + + S+S D T+ LW+L
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.9 bits (172), Expect = 2e-13
Identities = 77/365 (21%), Positives = 133/365 (36%), Gaps = 46/365 (12%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
+ L GH SVT + F +L +G++ G +++WD + +S+ H+ VS
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT---DPVSS 203
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
G + S DGT++ WD+ G L +L+ ++S S A+
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR-STLSGHSDS-VVSSFSPDGSLLASGSS 261
Query: 129 ANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDL 188
+ + + S S S ++ + K +A + V +WDL
Sbjct: 262 DGTIR-------LWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT-VRLWDL 313
Query: 189 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248
T G S +G V + S + V G +DG+I +WD+R
Sbjct: 314 ET-------------GKLLSSLTLKGHEGPVSSLSFSPDGSLL-VSGGSDDGTIRLWDLR 359
Query: 249 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 308
T + S D SG D + L++L + + +
Sbjct: 360 TGKPLKTLEGHSNVLSVSFSPDGRVVS--SGSTDGTVRLWDLSTGSLLRNLDGHTSR--- 414
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
++ PD K A+ D +R+++ + VSFS D K++AS S
Sbjct: 415 -VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS------------VSFSPDGKVLASKS 461
Query: 369 EDSTV 373
D +V
Sbjct: 462 SDLSV 466
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-11
Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 258 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 317
K H V C++ +G D I +++L+ TG + + + + +
Sbjct: 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE--TGELLRTLKGHTG--PVRDVAASA 61
Query: 318 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377
D A+ D+ +R+++ G + L H + ++V+FS D ++++S+S D T+ +W+
Sbjct: 62 DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121
Query: 378 L 378
+
Sbjct: 122 V 122
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.4 bits (137), Expect = 5e-09
Identities = 58/287 (20%), Positives = 107/287 (37%), Gaps = 33/287 (11%)
Query: 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
P++ L GH V+ + F +L A ++ G +R+WD T + H
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL---STGKLLRSTLSGHSD 243
Query: 66 VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN 125
V++ G + + S DGT++ WD+ + S+ T+ +S ++ +
Sbjct: 244 SVVSSFSPDG-SLLASGSSDGTIRLWDLRSS---SSLLRTLSGHSSSVLSVAFSPDGKLL 299
Query: 126 AKQANEPKDC-YEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVE 184
A +++ ++ E G+ + + +L + S D + G +
Sbjct: 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD-----GSLLVSGGSDDGTIR 354
Query: 185 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244
+WDL T + + G N S S S V +G DG++ +
Sbjct: 355 LWDLRTGK-----PLKTLEGHSNVLSV-------------SFSPDGRVVSSGSTDGTVRL 396
Query: 245 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 291
WD+ + G L + H V L SG +D I L++L
Sbjct: 397 WDL-STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----SSSWVHS 60
+ LRGH V V F + + + G +++WD + V + V+S
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96
A S K++S DGT+K WD+ G
Sbjct: 183 VA---------FSPDGEKLLSSSSDGTIKLWDLSTG 209
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 50/242 (20%), Positives = 90/242 (37%), Gaps = 38/242 (15%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
+ V L GH + V+ V F IL + + +++WD + +++ + + S
Sbjct: 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT--LRGHTDWVNS 140
Query: 68 VATGPSIGLNKVISQG-RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA 126
VA P ++ +DGT+K WD+ G + LT T + S E ++
Sbjct: 141 VAFSPD---GTFVASSSQDGTIKLWDLRTGKCVAT--LTGHTGEVNSVAFSPDGEKLLSS 195
Query: 127 KQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIW 186
K ++ G+ + T E+ + + +A E + + +W
Sbjct: 196 SSDGTIK-LWDLSTGKCLGT---LRGHENG----VNSVAFSPDGYLLASGSEDGT-IRVW 246
Query: 187 DLNTAERCTRL--HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244
DL T E L H NS +A P + + +G DG+I +
Sbjct: 247 DLRTGECVQTLSGHTNSVT------------SLAWS---PDGKR----LASGSADGTIRI 287
Query: 245 WD 246
WD
Sbjct: 288 WD 289
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-05
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
+ L+GH VT V F L +G+ G +++WD
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-05
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 338 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377
G L LK H +V+FS D K +AS S+D T+ LW+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-05
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
+ L+GH VT V F +L +G+ G +R+WD
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 7e-05
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 339 GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376
G L LK H +V+FS D L+AS S+D TV +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 9e-04
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
+ + L+GH V DV L +G++ +R+WD V + + + SV
Sbjct: 42 ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT--LTGHTSYVSSV 99
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENG 96
A P + + S RD T+K WD+E G
Sbjct: 100 AFSPDGRI--LSSSSRDKTIKVWDVETG 125
|
Length = 289 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.002
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI---SGGADQKIVLYNLDHSTG 295
+G + VWD+ + +T MK H + V SID S SG D + L++++
Sbjct: 554 EGVVQVWDVARSQL-VTEMKEHEKRVW--SIDYSSADPTLLASGSDDGSVKLWSINQGVS 610
Query: 296 SCVIKKEINL---ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS-ALAILKYHHAT 351
IK + N+ + P SG S+ A D +V Y+ R L + H T
Sbjct: 611 IGTIKTKANICCVQFPSESGRSL-------AFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663
Query: 352 CNAVSFSSDCKLMASASEDSTVALWEL 378
+ V F D + S+S D+T+ LW+L
Sbjct: 664 VSYVRFV-DSSTLVSSSTDNTLKLWDL 689
|
Length = 793 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 383 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.98 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.98 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.98 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.98 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.96 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.95 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.93 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.93 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.93 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.93 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.92 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.92 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.91 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.9 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.9 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| PTZ00421 | 493 | coronin; Provisional | 99.9 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.9 | |
| PTZ00420 | 568 | coronin; Provisional | 99.9 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.89 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.89 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.88 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.88 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.88 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.87 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.87 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.87 | |
| PTZ00420 | 568 | coronin; Provisional | 99.87 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.86 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.86 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.86 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.85 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.85 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.85 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.85 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.84 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.84 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.84 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.83 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.83 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.83 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.82 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.82 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.82 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.81 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.81 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.81 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.8 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.8 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.8 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.78 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.78 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.78 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.77 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.76 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.75 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.74 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.74 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.73 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.72 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.72 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.71 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.7 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.69 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.67 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.67 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.66 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.66 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.64 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.64 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.62 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.61 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.61 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.59 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.58 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.58 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.58 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.58 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.55 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.55 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.53 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.52 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.51 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.51 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.5 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.48 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.47 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.47 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.46 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.46 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.46 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.44 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.43 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.36 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.33 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.31 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.31 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.31 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.3 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.29 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.27 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.26 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.26 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.23 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.22 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.21 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.19 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.17 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.16 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.14 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.14 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.12 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.12 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.1 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.07 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.07 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.06 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.05 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.04 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.03 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.03 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.98 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.97 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.94 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.92 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.91 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.88 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.84 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.83 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.82 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.82 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.81 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.81 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.81 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.8 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.78 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.77 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.75 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.73 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.69 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.66 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.65 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.65 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.65 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.61 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.6 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.58 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.54 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.53 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.49 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.48 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.48 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.47 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.47 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.42 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.4 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.4 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.4 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.38 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.38 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.36 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.33 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.29 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.28 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.26 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.26 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.26 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.25 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.24 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.21 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.21 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.2 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.16 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.15 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.1 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.09 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.07 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.0 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.89 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.87 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.85 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.8 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.78 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.77 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.75 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.74 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.74 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.71 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.68 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.67 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.65 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.48 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.45 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.41 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.4 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.34 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.3 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.27 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.26 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.18 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.18 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.17 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.13 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.12 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.11 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.01 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.93 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.87 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.86 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.83 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.8 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.78 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.74 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.72 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.71 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.64 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 96.31 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.27 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.22 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.21 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.14 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.13 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.12 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.03 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.97 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.97 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.75 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 95.74 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 95.7 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 95.65 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 95.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 95.2 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.14 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 94.98 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.97 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.94 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.93 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.73 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 94.5 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 94.42 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.41 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.39 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.3 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 94.17 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.17 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 93.94 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 93.93 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 93.32 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 93.06 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 92.62 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 92.42 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 92.1 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 92.07 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 91.43 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 91.34 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 91.31 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.3 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 91.11 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 90.48 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 90.2 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 90.05 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 89.71 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 89.22 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 88.92 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 88.63 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 88.32 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 88.03 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 88.03 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 87.97 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 87.94 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 87.73 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 87.55 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 87.45 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 87.33 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 87.26 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 86.3 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 86.06 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 85.72 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 84.75 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 84.32 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 83.75 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 83.26 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 83.15 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 83.13 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 82.81 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 82.52 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 82.33 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 81.67 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 81.6 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 80.79 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=301.93 Aligned_cols=346 Identities=18% Similarity=0.281 Sum_probs=244.3
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
.+....+.||.++|.|++|+|+|+.|+|||.|.++|+||+.+.......+.|. +.+.+++++| ++.+++||+.||+
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~--~WVlcvawsP--Dgk~iASG~~dg~ 180 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK--NWVLCVAWSP--DGKKIASGSKDGS 180 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCc--cEEEEEEECC--CcchhhccccCCe
Confidence 33445678999999999999999999999999999999999888888777665 6799999999 5799999999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeee--EEee-ccccccccccCCCC----ccceeccCcccccCccccccccCCccc
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCK--LSLV-KEPYANAKQANEPK----DCYEREVGETVDTDSLCDSKESNRSFE 160 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
|++||..+|+....+. +.+.-.+.. ++.. ..+.-. ..+.+.+ .+|+...+..+ .. ...+...
T Consensus 181 I~lwdpktg~~~g~~l---~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~-~~-lsgHT~~----- 249 (480)
T KOG0271|consen 181 IRLWDPKTGQQIGRAL---RGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCV-RT-LSGHTAS----- 249 (480)
T ss_pred EEEecCCCCCcccccc---cCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEE-EE-eccCccc-----
Confidence 9999999887543221 111111111 1100 000000 0111111 11111111000 00 0111111
Q ss_pred eecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCC-CCcCCCCCceeeEEEeecCCCC------------
Q 016769 161 IIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS-PNFSSKGRGMCMAVQAYLPSKS------------ 227 (383)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~------------ 227 (383)
+ .|-.-|..-++.+|+.|++||+|+...+.++..+..+.+... ... +..+.+... +|-+...
T Consensus 250 V--TCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lal-sTdy~LRtg--af~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 250 V--TCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLAL-STDYVLRTG--AFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred e--EEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeec-cchhhhhcc--ccccccccCCChHHHHHHH
Confidence 1 111112223678899999999999999887777765543321 111 111111111 1111100
Q ss_pred ---------CCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeE
Q 016769 228 ---------QGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV 298 (383)
Q Consensus 228 ---------~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~ 298 (383)
+...++++|+.|.++.+|+......++..+.+|..-|+.+.|+|++.++++++.|+.|++||.++. +.+
T Consensus 325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG--k~l 402 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG--KFL 402 (480)
T ss_pred HHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc--chh
Confidence 011369999999999999987777788899999999999999999999999999999999987643 332
Q ss_pred EeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 299 IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 299 ~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
..+..|...|..++++.|.+.+++++.|.++++||+++.+...-+.||...|.++.|+|||+.+++|+.|..+++|.
T Consensus 403 --asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 403 --ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 23455667899999999999999999999999999999999889999999999999999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=285.87 Aligned_cols=288 Identities=20% Similarity=0.303 Sum_probs=228.9
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEee
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd 92 (383)
.-.|-+.+|..+.|++|++.|+|||.+|.++||+..+...+..+.+|. ..+.++.|.|...+..++||+.||++++|+
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~--~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT--SRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc--cceeeEEEccCCCccceeeeccCCceeeec
Confidence 334678999999999999999999999999999999887777777775 457788899853356899999999999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
+++... ...+.. |... ..-..+.|.| ++
T Consensus 248 ~~~e~~----l~~l~g---H~~R--------------------------------------------Vs~VafHPsG-~~ 275 (459)
T KOG0272|consen 248 LSQETP----LQDLEG---HLAR--------------------------------------------VSRVAFHPSG-KF 275 (459)
T ss_pred cCCCcc----hhhhhc---chhh--------------------------------------------heeeeecCCC-ce
Confidence 976421 111110 1000 0011233444 45
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
| .+++.|.+-|+||++++..+.....++ ..+++++ |.++. ..+++|+-|..-+|||+|++.
T Consensus 276 L-~TasfD~tWRlWD~~tk~ElL~QEGHs----------~~v~~ia---f~~DG----SL~~tGGlD~~~RvWDlRtgr- 336 (459)
T KOG0272|consen 276 L-GTASFDSTWRLWDLETKSELLLQEGHS----------KGVFSIA---FQPDG----SLAATGGLDSLGRVWDLRTGR- 336 (459)
T ss_pred e-eecccccchhhcccccchhhHhhcccc----------cccceeE---ecCCC----ceeeccCccchhheeecccCc-
Confidence 4 456778999999999988665444322 1222332 44443 357889999999999999954
Q ss_pred ceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC-CCcEEEEEeCCCcE
Q 016769 253 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRRV 331 (383)
Q Consensus 253 ~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~s~~~dg~i 331 (383)
.+-.+.+|..+|..+.|+|.|-.+++||.|++++||||+.... ...+..|.+-|+.+.|+| .|.+|++++.|+++
T Consensus 337 ~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 337 CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc----ceecccccchhhheEecccCCeEEEEcccCcce
Confidence 4678899999999999999999999999999999999986543 345667888899999999 67899999999999
Q ss_pred EEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 332 RIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 332 ~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
+||..++..+++++.||+..|.+++++||+..++|+|.|.++|+|.
T Consensus 413 kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 413 KIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999996
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=261.00 Aligned_cols=295 Identities=19% Similarity=0.282 Sum_probs=230.3
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
...+|+||...|+++.|++|.++|+|+|.||.+.|||..+..+++.+.. +...+...+++|+ ++.++.||.|+...
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl--~s~WVMtCA~sPS--g~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL--PSSWVMTCAYSPS--GNFVACGGLDNKCS 122 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--CceeEEEEEECCC--CCeEEecCcCceeE
Confidence 3468999999999999999999999999999999999988777665432 3467889999996 68889999999999
Q ss_pred EeecCCCCCCCCCeeeee-cCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc-CC
Q 016769 90 CWDIENGGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV-PA 167 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 167 (383)
|+++.+...... ..+. ....| ...+..| +.
T Consensus 123 iy~ls~~d~~g~--~~v~r~l~gH----------------------------------------------tgylScC~f~ 154 (343)
T KOG0286|consen 123 IYPLSTRDAEGN--VRVSRELAGH----------------------------------------------TGYLSCCRFL 154 (343)
T ss_pred EEeccccccccc--ceeeeeecCc----------------------------------------------cceeEEEEEc
Confidence 999975421110 0000 00000 0000000 11
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
+... ++.++.|.+.-+||+++++++..+.. +.+.++.++ +.|++ .+.+++|+-|++.+|||+
T Consensus 155 dD~~--ilT~SGD~TCalWDie~g~~~~~f~G----------H~gDV~sls---l~p~~---~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 155 DDNH--ILTGSGDMTCALWDIETGQQTQVFHG----------HTGDVMSLS---LSPSD---GNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred CCCc--eEecCCCceEEEEEcccceEEEEecC----------CcccEEEEe---cCCCC---CCeEEecccccceeeeec
Confidence 2222 34456678999999999998887763 223344433 44432 335789999999999999
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 327 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~ 327 (383)
|.+ ...+.+.+|...|+.+.|.|++..+++|+.|+++++|||+....... ........+|++++|+..|++|.+|..
T Consensus 217 R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~--ys~~~~~~gitSv~FS~SGRlLfagy~ 293 (343)
T KOG0286|consen 217 RSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV--YSHDSIICGITSVAFSKSGRLLFAGYD 293 (343)
T ss_pred cCc-ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee--eccCcccCCceeEEEcccccEEEeeec
Confidence 985 56788999999999999999999999999999999999986543333 233334467999999999999999999
Q ss_pred CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 328 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 328 dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
|.++.+||.-+++.+..+.+|++.|.++..+|||-.|+|||.|.++|||.
T Consensus 294 d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 294 DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999999999999995
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=248.80 Aligned_cols=294 Identities=21% Similarity=0.319 Sum_probs=219.9
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccc-ccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
.|...+.||++.|+.+.|+|+|..|||||.|..|.+|++..... ...+..|. ..+..+.+.. +++.++|+|.|.+
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHs--gAVM~l~~~~--d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHS--GAVMELHGMR--DGSHILSCGTDKT 113 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecccc--ceeEeeeecc--CCCEEEEecCCce
Confidence 46778899999999999999999999999999999999765432 23344444 3356666665 5789999999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
++.||+++|++.++ +..|..... +.....
T Consensus 114 v~~wD~~tG~~~rk-------~k~h~~~vN--------------------------------------------s~~p~r 142 (338)
T KOG0265|consen 114 VRGWDAETGKRIRK-------HKGHTSFVN--------------------------------------------SLDPSR 142 (338)
T ss_pred EEEEecccceeeeh-------hccccceee--------------------------------------------ecCccc
Confidence 99999999865332 111110000 000001
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
-| ..++.+|++|+++|+||+++...+.+++... ...++ .|. +....+++|+-|+.|++||+
T Consensus 143 rg-~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky-------------qltAv-~f~----d~s~qv~sggIdn~ikvWd~ 203 (338)
T KOG0265|consen 143 RG-PQLVCSGSDDGTLKLWDIRKKEAIKTFENKY-------------QLTAV-GFK----DTSDQVISGGIDNDIKVWDL 203 (338)
T ss_pred cC-CeEEEecCCCceEEEEeecccchhhccccce-------------eEEEE-Eec----ccccceeeccccCceeeecc
Confidence 12 3577889999999999999877665553210 11121 121 11235889999999999999
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCe--eEEeeeeecCC--CCeEEEEECCCCcEEE
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS--CVIKKEINLER--PGISGTSIRPDSKIAA 323 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~--~~~~~~~~~~~--~~i~~~~~~p~~~~l~ 323 (383)
+... .+..+.+|.++|..+...+.+..+++-+-|+++++||++..... +.....-..+. ...-..+++|++.++.
T Consensus 204 r~~d-~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ 282 (338)
T KOG0265|consen 204 RKND-GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT 282 (338)
T ss_pred ccCc-ceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc
Confidence 8744 47789999999999999999999999999999999999864322 22222211122 2234678899999999
Q ss_pred EEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 324 TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 324 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
+|+.|+.+++||....+.++.+.||..-|++++|+|...+|.+++.|.+|.+=.
T Consensus 283 ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 283 AGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999999999899999999999999999999999999999999998743
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=226.39 Aligned_cols=276 Identities=19% Similarity=0.313 Sum_probs=197.8
Q ss_pred CeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCc
Q 016769 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (383)
Q Consensus 31 ~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~ 110 (383)
-+|+|+|-|.+||+|++.+++|...+. |.. ..+-.+.+.|+ ...|++++ ...||++|+.++.. .|..++..+.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq-h~d-sqVNrLeiTpd--k~~LAaa~-~qhvRlyD~~S~np--~Pv~t~e~h~ 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ-HPD-SQVNRLEITPD--KKDLAAAG-NQHVRLYDLNSNNP--NPVATFEGHT 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe-cCc-cceeeEEEcCC--cchhhhcc-CCeeEEEEccCCCC--CceeEEeccC
Confidence 379999999999999999999988764 322 34666777773 34455554 47899999987631 1221111000
Q ss_pred eeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCC
Q 016769 111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNT 190 (383)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~ 190 (383)
++.. ...+..+| ++ ..+|+.||++||||++.
T Consensus 84 ---------kNVt--------------------------------------aVgF~~dg-rW-MyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 84 ---------KNVT--------------------------------------AVGFQCDG-RW-MYTGSEDGTVKIWDLRS 114 (311)
T ss_pred ---------CceE--------------------------------------EEEEeecC-eE-EEecCCCceEEEEeccC
Confidence 0000 00111233 34 45677899999999999
Q ss_pred CCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEe
Q 016769 191 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID 270 (383)
Q Consensus 191 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~ 270 (383)
..+..-+..+ ..+.+.. +.| ++ ..+++|.++|.|++||++........+.....+|.++.++
T Consensus 115 ~~~qR~~~~~-----------spVn~vv---lhp--nQ--teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~ 176 (311)
T KOG0315|consen 115 LSCQRNYQHN-----------SPVNTVV---LHP--NQ--TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVM 176 (311)
T ss_pred cccchhccCC-----------CCcceEE---ecC--Cc--ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEc
Confidence 5543333221 1122211 222 22 3699999999999999987544444445556789999999
Q ss_pred CCCCceEEEEcCCcEEEEEccCCCCeeEEeee--eecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCC-ceEEEecc
Q 016769 271 ESCNGGISGGADQKIVLYNLDHSTGSCVIKKE--INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG-SALAILKY 347 (383)
Q Consensus 271 ~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~--~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~ 347 (383)
+++..++.+...|+..+|++-..+....+... +..+...+..+.||||++|||++|.|++++||+.+.. +....+.+
T Consensus 177 ~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g 256 (311)
T KOG0315|consen 177 PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG 256 (311)
T ss_pred CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec
Confidence 99999999999999999998654433333221 3456677899999999999999999999999999887 55678899
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 348 HHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 348 h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
|++.++..+||.||+||++||.|+.+++|++.-
T Consensus 257 h~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 257 HQRWVWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred CCceEEeeeeccCccEEEecCCCCceeeccccc
Confidence 999999999999999999999999999999853
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=226.96 Aligned_cols=292 Identities=18% Similarity=0.304 Sum_probs=210.8
Q ss_pred CeeeeeecCCceeeEEEeCC-CCeEEEecCCCeEEEeeCccc-----ccccccccccccceeeeeeecCCCCcceeEecc
Q 016769 10 PVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~-~~~L~sgs~D~~v~vW~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (383)
...+|+||++.|++++..+. ...|++++.|.++.+|++... ..+..+.+|+ |.+..+..++ ++++++|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs--H~v~dv~~s~--dg~~alS~s 82 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS--HFVSDVVLSS--DGNFALSAS 82 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccc--eEecceEEcc--CCceEEecc
Confidence 44689999999999999886 568999999999999997543 2334444444 5677777776 578999999
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
+|+++|+||+++++... . +.-++.. ....
T Consensus 83 wD~~lrlWDl~~g~~t~----~----------f~GH~~d-------------------------------------Vlsv 111 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTR----R----------FVGHTKD-------------------------------------VLSV 111 (315)
T ss_pred ccceEEEEEecCCcEEE----E----------EEecCCc-------------------------------------eEEE
Confidence 99999999999874211 1 0000000 0011
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
+++++.. -+++|+.|++|++|+.-...... +..+. ...- .....|.|+..+ ..++++++|++||
T Consensus 112 a~s~dn~--qivSGSrDkTiklwnt~g~ck~t-~~~~~--------~~~W---VscvrfsP~~~~--p~Ivs~s~DktvK 175 (315)
T KOG0279|consen 112 AFSTDNR--QIVSGSRDKTIKLWNTLGVCKYT-IHEDS--------HREW---VSCVRFSPNESN--PIIVSASWDKTVK 175 (315)
T ss_pred EecCCCc--eeecCCCcceeeeeeecccEEEE-EecCC--------CcCc---EEEEEEcCCCCC--cEEEEccCCceEE
Confidence 2334443 35788999999999987655433 32211 0111 222347776433 3588999999999
Q ss_pred EEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEE
Q 016769 244 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 323 (383)
Q Consensus 244 ~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 323 (383)
+||+++.. ....+.+|+..++.++++|+|..+++|+.||.+.+||++... ++... .+...|++++|+|+. |.+
T Consensus 176 vWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k--~lysl---~a~~~v~sl~fspnr-ywL 248 (315)
T KOG0279|consen 176 VWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK--NLYSL---EAFDIVNSLCFSPNR-YWL 248 (315)
T ss_pred EEccCCcc-hhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc--eeEec---cCCCeEeeEEecCCc-eeE
Confidence 99998743 345677899999999999999999999999999999998643 32222 233569999999986 555
Q ss_pred EEeCCCcEEEEEcCCCceEEEec----c-----cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 324 TAGWDRRVRIYNYRKGSALAILK----Y-----HHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 324 s~~~dg~i~iwd~~~~~~~~~~~----~-----h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
++..+..|+|||+++++.+..++ + -.-.+.+++||+||..|.+|-.|+.|++|.+.
T Consensus 249 ~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 249 CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 56667779999999987765443 1 13346788999999999999999999999874
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=238.68 Aligned_cols=293 Identities=20% Similarity=0.324 Sum_probs=227.5
Q ss_pred CCCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccC
Q 016769 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
|+|..++.+.||+.+|+.+-|+|+....+++++|.+|++||..+++++..+.+|..+ +..+.+... +..+++++.|
T Consensus 96 pRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s--v~di~~~a~--Gk~l~tcSsD 171 (406)
T KOG0295|consen 96 PRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDS--VFDISFDAS--GKYLATCSSD 171 (406)
T ss_pred CCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccc--eeEEEEecC--ccEEEecCCc
Confidence 556677889999999999999999999999999999999999999998888888643 777888763 6889999999
Q ss_pred CeEEEeecCCC-CCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 86 GTVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 86 ~ti~~Wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
-++++||.++. ++.+ ....| . ..+ ..+.
T Consensus 172 l~~~LWd~~~~~~c~k-------s~~gh----------~---------h~v---------------------S~V~---- 200 (406)
T KOG0295|consen 172 LSAKLWDFDTFFRCIK-------SLIGH----------E---------HGV---------------------SSVF---- 200 (406)
T ss_pred cchhheeHHHHHHHHH-------HhcCc----------c---------cce---------------------eeEE----
Confidence 99999998652 1110 00000 0 000 0000
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEE
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~ 244 (383)
+-+.| . .+++.+.|++|+.||+.++.++.+++.+.. .+.+. . +. ++...+++|+.|.+|++
T Consensus 201 f~P~g-d-~ilS~srD~tik~We~~tg~cv~t~~~h~e-----------wvr~v-~---v~--~DGti~As~s~dqtl~v 261 (406)
T KOG0295|consen 201 FLPLG-D-HILSCSRDNTIKAWECDTGYCVKTFPGHSE-----------WVRMV-R---VN--QDGTIIASCSNDQTLRV 261 (406)
T ss_pred EEecC-C-eeeecccccceeEEecccceeEEeccCchH-----------hEEEE-E---ec--CCeeEEEecCCCceEEE
Confidence 01122 2 345567789999999999999988875321 22211 1 11 23335678999999999
Q ss_pred EeCCCCCCceeeeeccccCeEEEEEeCC---------------CCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCC
Q 016769 245 WDIRNPGIPLTAMKVHLEPVLCLSIDES---------------CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 309 (383)
Q Consensus 245 wdl~~~~~~~~~~~~h~~~v~~~~~~~~---------------~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~ 309 (383)
|=+.+ +.+...+..|..+|.|++|.+. +..+.+++.|++|++||+. ++.+++ ++..+.+.
T Consensus 262 W~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~--tg~cL~--tL~ghdnw 336 (406)
T KOG0295|consen 262 WVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS--TGMCLF--TLVGHDNW 336 (406)
T ss_pred EEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc--CCeEEE--EEecccce
Confidence 99877 3345667789999999988332 2367889999999999986 445554 56778899
Q ss_pred eEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
|.+++|+|.|+||++...|+++++||+..+++++++..|+.-|.+++|+-+..+++|||-|.++++|.
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999999999999999999999999999999998888999999999999996
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=239.22 Aligned_cols=293 Identities=22% Similarity=0.330 Sum_probs=196.4
Q ss_pred cccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeecccccccccc--
Q 016769 52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-- 129 (383)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 129 (383)
|-..+.+|. +.++++.|+| ++..|+||+.|.|+|+||+.+. +|.++.+.+. + ....+...|...-...
T Consensus 107 CssS~~GH~--e~Vl~~~fsp--~g~~l~tGsGD~TvR~WD~~Te----Tp~~t~KgH~-~-WVlcvawsPDgk~iASG~ 176 (480)
T KOG0271|consen 107 CSSSIAGHG--EAVLSVQFSP--TGSRLVTGSGDTTVRLWDLDTE----TPLFTCKGHK-N-WVLCVAWSPDGKKIASGS 176 (480)
T ss_pred eccccCCCC--CcEEEEEecC--CCceEEecCCCceEEeeccCCC----CcceeecCCc-c-EEEEEEECCCcchhhccc
Confidence 333444443 5689999999 5789999999999999999764 4455544432 1 1222222222211111
Q ss_pred -CCCCccceeccCcccccCcccccccc-CCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCC
Q 016769 130 -NEPKDCYEREVGETVDTDSLCDSKES-NRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPN 207 (383)
Q Consensus 130 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~ 207 (383)
.+...+|+-..|+.......++.+-. ..++.... ..++. + ++++++.||.++|||+.-+.++..+..+
T Consensus 177 ~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~h-l~p~~-r-~las~skDg~vrIWd~~~~~~~~~lsgH------- 246 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLH-LVPPC-R-RLASSSKDGSVRIWDTKLGTCVRTLSGH------- 246 (480)
T ss_pred cCCeEEEecCCCCCcccccccCcccceeEEeecccc-cCCCc-c-ceecccCCCCEEEEEccCceEEEEeccC-------
Confidence 11112222222222222222221110 00111111 11233 3 4567788999999999888877666432
Q ss_pred cCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEe-----------CCCCc-
Q 016769 208 FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID-----------ESCNG- 275 (383)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~-----------~~~~~- 275 (383)
.+++..... .+...+.+|+.|++|++|+... +..+..+++|...|+.++.+ +.++.
T Consensus 247 --------T~~VTCvrw---GG~gliySgS~DrtIkvw~a~d-G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 247 --------TASVTCVRW---GGEGLIYSGSQDRTIKVWRALD-GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred --------ccceEEEEE---cCCceEEecCCCceEEEEEccc-hhHHHhhcccchheeeeeccchhhhhccccccccccC
Confidence 112222211 2334688999999999999876 55678899999999888764 33333
Q ss_pred ------------------------eEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcE
Q 016769 276 ------------------------GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 331 (383)
Q Consensus 276 ------------------------~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i 331 (383)
+++|+.|.++.+|+-.... ++ ...+..|+.-|+.+.|+||++|||+++.|+.|
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-kp--i~rmtgHq~lVn~V~fSPd~r~IASaSFDkSV 391 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-KP--ITRMTGHQALVNHVSFSPDGRYIASASFDKSV 391 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-cc--hhhhhchhhheeeEEECCCccEEEEeecccce
Confidence 8999999999999754221 11 12355677889999999999999999999999
Q ss_pred EEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 332 RIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 332 ~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
++||.++|+.+.+++||...|..++||.|.++|+|||.|.++++|++.
T Consensus 392 kLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 392 KLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred eeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEee
Confidence 999999999999999999999999999999999999999999999874
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=247.77 Aligned_cols=251 Identities=22% Similarity=0.321 Sum_probs=197.2
Q ss_pred CCCCCeeeeeecCCceeeEEEeCC--CCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecc
Q 016769 6 PPPDPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (383)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~v~f~~~--~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (383)
|..+.+++|+||++.|.++.|+|. +..||||+.||++++|++.+...+..+.+|. ..+..++|.|+ |..|+|++
T Consensus 205 ~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~--~RVs~VafHPs--G~~L~Tas 280 (459)
T KOG0272|consen 205 PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL--ARVSRVAFHPS--GKFLGTAS 280 (459)
T ss_pred CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch--hhheeeeecCC--Cceeeecc
Confidence 455778999999999999999997 5589999999999999999888888887776 56888999995 78999999
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
.|.|-|+||++++..+- ..+.+ ...++ ..
T Consensus 281 fD~tWRlWD~~tk~ElL----~QEGH----------------------s~~v~-------------------------~i 309 (459)
T KOG0272|consen 281 FDSTWRLWDLETKSELL----LQEGH----------------------SKGVF-------------------------SI 309 (459)
T ss_pred cccchhhcccccchhhH----hhccc----------------------ccccc-------------------------ee
Confidence 99999999998763210 00000 00000 01
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
++.++|. ++++|+.|..-||||++++.+++.+..+. ..++.+ .|.|+ + ..+++|+.|++++
T Consensus 310 af~~DGS--L~~tGGlD~~~RvWDlRtgr~im~L~gH~----------k~I~~V---~fsPN---G-y~lATgs~Dnt~k 370 (459)
T KOG0272|consen 310 AFQPDGS--LAATGGLDSLGRVWDLRTGRCIMFLAGHI----------KEILSV---AFSPN---G-YHLATGSSDNTCK 370 (459)
T ss_pred EecCCCc--eeeccCccchhheeecccCcEEEEecccc----------cceeeE---eECCC---c-eEEeecCCCCcEE
Confidence 2334443 78889999999999999999999887532 122222 35543 2 3689999999999
Q ss_pred EEeCCCCCCceeeeeccccCeEEEEEeC-CCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEE
Q 016769 244 VWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA 322 (383)
Q Consensus 244 ~wdl~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 322 (383)
|||++.. ..+..+.+|..-|..+.|+| .+..+++++.|+++++|.-.. ..+ .+.+-.|.+.|.+++++||++++
T Consensus 371 VWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--~~~--~ksLaGHe~kV~s~Dis~d~~~i 445 (459)
T KOG0272|consen 371 VWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--WSP--LKSLAGHEGKVISLDISPDSQAI 445 (459)
T ss_pred Eeeeccc-ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCC--ccc--chhhcCCccceEEEEeccCCceE
Confidence 9999984 44788999999999999997 667789999999999996543 222 34566788999999999999999
Q ss_pred EEEeCCCcEEEEE
Q 016769 323 ATAGWDRRVRIYN 335 (383)
Q Consensus 323 ~s~~~dg~i~iwd 335 (383)
++++.|++|++|.
T Consensus 446 ~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 446 ATSSFDRTIKLWR 458 (459)
T ss_pred EEeccCceeeecc
Confidence 9999999999995
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=227.36 Aligned_cols=314 Identities=40% Similarity=0.670 Sum_probs=223.4
Q ss_pred CCCCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEeccc
Q 016769 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (383)
Q Consensus 5 ~~~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (383)
|+||.|.++|++|.+.|++++|-.+++ |++|..-|.|++|.+.+.+....+..+. ...+..+-..| +..|.+.+.
T Consensus 1 ~~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g-~~~it~lq~~p---~d~l~tqgR 75 (323)
T KOG0322|consen 1 MVPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFG-RLFITNLQSIP---NDSLDTQGR 75 (323)
T ss_pred CCCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhc-cceeeceeecC---CcchhhcCC
Confidence 579999999999999999999988775 9999999999999998776554443221 12344454444 368899999
Q ss_pred CCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 85 D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
|.++.+|++.-+.... ...+..++.+||.+++++.+....... ..+..+.
T Consensus 76 d~~L~lw~ia~s~~i~--i~Si~~nslgFCrfSl~~~~k~~eqll-------------------~yp~rgs--------- 125 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFIS--IHSIVVNSLGFCRFSLVKKPKNSEQLL-------------------EYPSRGS--------- 125 (323)
T ss_pred CceEEEEEccCcceEE--EeeeeccccccccceeccCCCcchhhe-------------------ecCCccc---------
Confidence 9999999997653221 123344567889888876553221000 0000000
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEE
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~ 244 (383)
+ .+.+=|.....++. +..+ ......+.+||.... ..-.....+++|+++|.|.+
T Consensus 126 --------------d--e~h~~D~g~~tqv~-i~dd-----~~~~Klgsvmc~~~~----~~c~s~~lllaGyEsghvv~ 179 (323)
T KOG0322|consen 126 --------------D--ETHKQDGGDTTQVQ-IADD-----SERSKLGSVMCQDKD----HACGSTFLLLAGYESGHVVI 179 (323)
T ss_pred --------------c--hhhhhccCccceeE-ccCc-----hhccccCceeeeecc----ccccceEEEEEeccCCeEEE
Confidence 0 00000000000000 0000 001111223332211 00111235788999999999
Q ss_pred EeCCCCCCc---------eeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEE
Q 016769 245 WDIRNPGIP---------LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 315 (383)
Q Consensus 245 wdl~~~~~~---------~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (383)
||+.++... ......|.++|.++.+++.....++|+.+..+..|+++..++...+..+.+....+++.+.+
T Consensus 180 wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrI 259 (323)
T KOG0322|consen 180 WDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRI 259 (323)
T ss_pred EEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEE
Confidence 999874221 22345689999999999988888999999999999999888887777777777788999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 316 RPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 316 ~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.||++.+|+++||++||+|+.++.+++..++.|...|++++|+||...+|++|.|+.|.+|++|
T Consensus 260 RpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 260 RPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred ccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=246.76 Aligned_cols=295 Identities=16% Similarity=0.326 Sum_probs=215.5
Q ss_pred CCCCeeeeeecCCceeeEEEeC-CCCeEEEecCCCeEEEeeCcc-cccccccccccccceeeeeeecCCCCcceeEeccc
Q 016769 7 PPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (383)
Q Consensus 7 ~~~~~~~l~gH~~~V~~v~f~~-~~~~L~sgs~D~~v~vW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (383)
|.+.+.++.||+..|+++.|.| .+.+|+|+|.|+.|+|||+-. ++++....+|. ..+..+.|+. .+..|+|+|.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~--k~Vrd~~~s~--~g~~fLS~sf 278 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHR--KPVRDASFNN--CGTSFLSASF 278 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcch--hhhhhhhccc--cCCeeeeeec
Confidence 5567789999999999999999 889999999999999999976 66777766665 3467778877 4789999999
Q ss_pred CCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 85 D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
|+++++||.|+|.+.. .++....-.| ..
T Consensus 279 D~~lKlwDtETG~~~~----~f~~~~~~~c------------------------------------------------vk 306 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLS----RFHLDKVPTC------------------------------------------------VK 306 (503)
T ss_pred ceeeeeeccccceEEE----EEecCCCcee------------------------------------------------ee
Confidence 9999999999986421 1111000000 11
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEE
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~ 244 (383)
+.++++..+ .+|..++.|+.||+++++.+....++. +.++. ..|.+.+ .+.++.++|++++|
T Consensus 307 f~pd~~n~f-l~G~sd~ki~~wDiRs~kvvqeYd~hL----------g~i~~---i~F~~~g----~rFissSDdks~ri 368 (503)
T KOG0282|consen 307 FHPDNQNIF-LVGGSDKKIRQWDIRSGKVVQEYDRHL----------GAILD---ITFVDEG----RRFISSSDDKSVRI 368 (503)
T ss_pred cCCCCCcEE-EEecCCCcEEEEeccchHHHHHHHhhh----------hheee---eEEccCC----ceEeeeccCccEEE
Confidence 223443434 456668999999999998654433211 11111 1344432 36889999999999
Q ss_pred EeCCCCCCceeeee-ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecC--CCCeEEEEECCCCcE
Q 016769 245 WDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE--RPGISGTSIRPDSKI 321 (383)
Q Consensus 245 wdl~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~~ 321 (383)
|+.+.+. ++..+. .+.....++...|.+..++.-+-|+.|.++.+...-.... ++..+.+ .+.-..+.|||||++
T Consensus 369 We~~~~v-~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk-kK~feGh~vaGys~~v~fSpDG~~ 446 (503)
T KOG0282|consen 369 WENRIPV-PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK-KKRFEGHSVAGYSCQVDFSPDGRT 446 (503)
T ss_pred EEcCCCc-cchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH-hhhhcceeccCceeeEEEcCCCCe
Confidence 9987643 232221 1223455788899999888889999999998654321111 1112222 234567889999999
Q ss_pred EEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEe
Q 016769 322 AATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWE 377 (383)
Q Consensus 322 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~ 377 (383)
|++|..||++.+||..+.+.+..+++|..+|..+.|+|-.. .+||++.||.|++|+
T Consensus 447 l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 447 LCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999999999999999999999999999999654 899999999999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=234.43 Aligned_cols=302 Identities=20% Similarity=0.231 Sum_probs=212.4
Q ss_pred CCCCCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccc---ccccccccccceeeeeeecCCCCcceeE
Q 016769 4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (383)
Q Consensus 4 ~~~~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (383)
..-|.+..++|..|+++|+.+.||++|++|||+|.|.+..+|++..... ...+.+|. ..+..+.++| ++++|+
T Consensus 210 ~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~--~~V~yi~wSP--DdryLl 285 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS--QPVSYIMWSP--DDRYLL 285 (519)
T ss_pred ccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeeccc--CceEEEEECC--CCCeEE
Confidence 3457777889999999999999999999999999999999999866544 33333333 4688899999 579999
Q ss_pred ecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccc
Q 016769 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFE 160 (383)
Q Consensus 81 s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
+||.|..+++||+.+|+..... ... + ..+ .
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~y-----~~~-~----------------~~S----------------------------~ 315 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHLY-----PSG-L----------------GFS----------------------------V 315 (519)
T ss_pred ecCchHheeeccCCcchhhhhc-----ccC-c----------------CCC----------------------------c
Confidence 9999999999999998643210 000 0 000 0
Q ss_pred eecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC
Q 016769 161 IIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 240 (383)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg 240 (383)
......++|.+ +++|+.|+++..||++-...-.- + . ....++.++++. + +...+++-..|.
T Consensus 316 ~sc~W~pDg~~--~V~Gs~dr~i~~wdlDgn~~~~W-~------g---vr~~~v~dlait---~----Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 316 SSCAWCPDGFR--FVTGSPDRTIIMWDLDGNILGNW-E------G---VRDPKVHDLAIT---Y----DGKYVLLVTVDK 376 (519)
T ss_pred ceeEEccCCce--eEecCCCCcEEEecCCcchhhcc-c------c---cccceeEEEEEc---C----CCcEEEEEeccc
Confidence 00112355544 56788899999999865431100 0 0 011233344432 1 123566777899
Q ss_pred cEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEEC-CCC
Q 016769 241 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR-PDS 319 (383)
Q Consensus 241 ~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~-p~~ 319 (383)
.|++++.+. ...+..+. ...++.+++++.++...++.-.++.+.+||++..- ...+......+.-+-.-+|- .+.
T Consensus 377 ~i~l~~~e~-~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~--lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 377 KIRLYNREA-RVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK--LVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred ceeeechhh-hhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh--HHHHhhcccccceEEEeccCCCCc
Confidence 999999765 22222232 34689999999999988888899999999997321 11111100011122233343 355
Q ss_pred cEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCCCCC
Q 016769 320 KIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYPPH 382 (383)
Q Consensus 320 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~~~~ 382 (383)
.++++||.|++|+||+..+++++..+.||.+.|++|+|+|..+ ++||||+||+||||...++.
T Consensus 453 ~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~~ 516 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDNN 516 (519)
T ss_pred ceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCccc
Confidence 7999999999999999999999999999999999999999776 99999999999999987653
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=246.75 Aligned_cols=191 Identities=19% Similarity=0.302 Sum_probs=148.2
Q ss_pred eeeeccCCcceEEEEecCCCCeee-EeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCC
Q 016769 172 YMAVAGEQLSEVEIWDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 250 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~ 250 (383)
.++++++.|+++++|.++++.... .+.+.. .+.. .+-+.+. . ..+...+++++.|.++++|++...
T Consensus 378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~-----gH~~--svgava~---~---~~~asffvsvS~D~tlK~W~l~~s 444 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSKSLCVAQAN-----GHTN--SVGAVAG---S---KLGASFFVSVSQDCTLKLWDLPKS 444 (775)
T ss_pred cEEEEecCCceEEEEEecCCcchhhhhhhhc-----cccc--ccceeee---c---ccCccEEEEecCCceEEEecCCCc
Confidence 577788899999999995544211 111100 1111 1111211 1 123346889999999999999762
Q ss_pred C---Cce-e----eeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEE
Q 016769 251 G---IPL-T----AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA 322 (383)
Q Consensus 251 ~---~~~-~----~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 322 (383)
. .++ . ....|-..|+++++.|....+++||.|++.++|+++. ..+...+..|.-++.++.|+|+.+.+
T Consensus 445 ~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~----~~l~~vLsGH~RGvw~V~Fs~~dq~l 520 (775)
T KOG0319|consen 445 KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ----LRLLGVLSGHTRGVWCVSFSKNDQLL 520 (775)
T ss_pred ccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC----ceEEEEeeCCccceEEEEecccccee
Confidence 1 111 1 2245888999999999999999999999999999972 23344567788899999999999999
Q ss_pred EEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 323 ATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 323 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+++|.|+||+||.+.+..+++++.||...|..++|-.+|+.|+|++.||.||+|++.
T Consensus 521 aT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 521 ATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred EeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 999999999999999999999999999999999999999999999999999999984
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=238.88 Aligned_cols=346 Identities=18% Similarity=0.260 Sum_probs=228.0
Q ss_pred eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccccc--ccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS--SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
..++.||.+.|.+|.|+.|.++|++||.|.++|||.+..-+.+. .+..|. ..+++..|+. +...+.+.+.||.+
T Consensus 138 ~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHk--d~VvacfF~~--~~~~l~tvskdG~l 213 (893)
T KOG0291|consen 138 HRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHK--DYVVACFFGA--NSLDLYTVSKDGAL 213 (893)
T ss_pred eeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCC--cceEEEEecc--CcceEEEEecCceE
Confidence 34778999999999999999999999999999999987655432 333343 3467777776 35679999999999
Q ss_pred EEeecCCC--CCCC---------------CCeeeeecCceeee-eEEeecccc--ccccccCC-CCccceeccCcccc--
Q 016769 89 KCWDIENG--GLSS---------------NPSLTIKTNSYHFC-KLSLVKEPY--ANAKQANE-PKDCYEREVGETVD-- 145 (383)
Q Consensus 89 ~~Wd~~~~--~~~~---------------~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~-- 145 (383)
.+|.+... ..-. ......+...+..- ...+.+.+. ..+..... ...+.....|....
T Consensus 214 ~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Lye 293 (893)
T KOG0291|consen 214 FVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYE 293 (893)
T ss_pred EEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEe
Confidence 99998621 0000 00000000000000 001111100 00000000 00011111121100
Q ss_pred -cCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecC
Q 016769 146 -TDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP 224 (383)
Q Consensus 146 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 224 (383)
.+...-+........+..........+++.+++.-|.+-+|+..+...+.+.+.+. .+ +....++|
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~----------~~---i~~l~YSp 360 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS----------DR---ITSLAYSP 360 (893)
T ss_pred cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc----------cc---eeeEEECC
Confidence 00000000000000010001111235777777777899999998887766554321 12 22234666
Q ss_pred CCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee
Q 016769 225 SKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN 304 (383)
Q Consensus 225 ~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~ 304 (383)
+. ..+++|++||.|||||..+ +.++.++..|+..|..+.|...++.+++.+-||+|+.||+.....-..+. .
T Consensus 361 Dg----q~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft---~ 432 (893)
T KOG0291|consen 361 DG----QLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT---S 432 (893)
T ss_pred CC----cEEEeccCCCcEEEEeccC-ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec---C
Confidence 53 3688999999999999987 56788999999999999999999999999999999999997554322221 1
Q ss_pred cCCCCeEEEEECCCCcEEEEEeCCC-cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 305 LERPGISGTSIRPDSKIAATAGWDR-RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 305 ~~~~~i~~~~~~p~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
...-...+++..|.|..+.+|+.|. .|++|++.+|+.+..+.||+++|.+++|+|++..|||||.|.+||+||+++-
T Consensus 433 P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 433 PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 2234578999999999998888876 6999999999999999999999999999999999999999999999999753
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-30 Score=229.17 Aligned_cols=343 Identities=18% Similarity=0.225 Sum_probs=222.0
Q ss_pred CCCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccccccccc-ccccceeeeeeecCCCCcceeEeccc
Q 016769 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV-HSAAHGIVSVATGPSIGLNKVISQGR 84 (383)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (383)
||=+...+++.|..-|+|+.|+|||.+++|.|.||.+.+||=.++..+..+.. ..+..++.+++++| ++.+++|+|.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP--Ds~~~~T~Sa 255 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP--DSTQFLTVSA 255 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC--CCceEEEecC
Confidence 44455667889999999999999999999999999999999888877766542 12335789999999 5789999999
Q ss_pred CCeEEEeecCCCCCCCCCeeeeec-CceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 85 DGTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 85 D~ti~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
|.++|+||+.+..+.++..+.-.. .+.-.|.+. + .........+-...+...... ...... ++.+.+.
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--k-d~lItVSl~G~in~ln~~d~~-~~~~i~-------GHnK~IT 324 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--K-DHLITVSLSGTINYLNPSDPS-VLKVIS-------GHNKSIT 324 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEe--C-CeEEEEEcCcEEEEecccCCC-hhheec-------cccccee
Confidence 999999999887653321110000 011122221 0 000000000000000000000 000011 1222222
Q ss_pred c--cCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCc
Q 016769 164 D--VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 241 (383)
Q Consensus 164 ~--~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~ 241 (383)
+ ..+++ ++ +.+|+.||.|.-||+.++..-....+ .+. -.+.+++.. . ...+++.+.|.+
T Consensus 325 aLtv~~d~-~~-i~SgsyDG~I~~W~~~~g~~~~~~g~-------~h~--nqI~~~~~~-----~---~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 325 ALTVSPDG-KT-IYSGSYDGHINSWDSGSGTSDRLAGK-------GHT--NQIKGMAAS-----E---SGELFTIGWDDT 385 (603)
T ss_pred EEEEcCCC-CE-EEeeccCceEEEEecCCccccccccc-------ccc--ceEEEEeec-----C---CCcEEEEecCCe
Confidence 2 33444 44 45688999999999988764322111 011 112222211 1 014777888888
Q ss_pred EEEEeCCCCC-----------Cce-------------------eeeeccc--------cCeEEEEEeCCCCceEEEEcCC
Q 016769 242 ILVWDIRNPG-----------IPL-------------------TAMKVHL--------EPVLCLSIDESCNGGISGGADQ 283 (383)
Q Consensus 242 i~~wdl~~~~-----------~~~-------------------~~~~~h~--------~~v~~~~~~~~~~~~~s~~~d~ 283 (383)
+++.++.... +|. ..++.+. -...++++++++..++.|+.|+
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dg 465 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDG 465 (603)
T ss_pred EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccc
Confidence 8888663210 010 0111111 1346788899999999999999
Q ss_pred cEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceE-EEecccccceeEEEEeCCCC
Q 016769 284 KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL-AILKYHHATCNAVSFSSDCK 362 (383)
Q Consensus 284 ~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~v~~spd~~ 362 (383)
.+.+|.|........ .....+...++.++|+||+.|||++...+++.+||+.+.+.. ..+.-|...|++++|+|+++
T Consensus 466 kvhvysl~g~~l~ee--~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~ 543 (603)
T KOG0318|consen 466 KVHVYSLSGDELKEE--AKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK 543 (603)
T ss_pred eEEEEEecCCcccce--eeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCce
Confidence 999999976542221 123346678999999999999999999999999999887763 35556999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 016769 363 LMASASEDSTVALWELYPPH 382 (383)
Q Consensus 363 ~las~s~d~~i~~w~~~~~~ 382 (383)
++||||-|.+|.||++..|.
T Consensus 544 ~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 544 LVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred EEEeccccceEEEEEccChh
Confidence 99999999999999998774
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=262.20 Aligned_cols=295 Identities=15% Similarity=0.231 Sum_probs=204.0
Q ss_pred eeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccc----ccccc-cccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 14 l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
+.+|...|++++|+|++++|||||.|+.|+||+.... +.... .........+.++++.+. .+.+|++++.|++|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSY-IKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccC-CCCEEEEEeCCCeE
Confidence 4469999999999999999999999999999997532 11100 000011124556677653 35789999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++||++++.... .+..+ . ..++ ..++.+.
T Consensus 558 ~lWd~~~~~~~~----~~~~H-------------~---------~~V~-------------------------~l~~~p~ 586 (793)
T PLN00181 558 QVWDVARSQLVT----EMKEH-------------E---------KRVW-------------------------SIDYSSA 586 (793)
T ss_pred EEEECCCCeEEE----EecCC-------------C---------CCEE-------------------------EEEEcCC
Confidence 999997653110 00000 0 0000 0112222
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
... ++++|+.|++|++||++++..+..+... ....+. .|.+. ....+++|+.|+.|++||++
T Consensus 587 ~~~-~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-----------~~v~~v---~~~~~---~g~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 587 DPT-LLASGSDDGSVKLWSINQGVSIGTIKTK-----------ANICCV---QFPSE---SGRSLAFGSADHKVYYYDLR 648 (793)
T ss_pred CCC-EEEEEcCCCEEEEEECCCCcEEEEEecC-----------CCeEEE---EEeCC---CCCEEEEEeCCCeEEEEECC
Confidence 222 4456677899999999988776655421 112222 12221 12358899999999999998
Q ss_pred CCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCe--eEEeeeeecCCCCeEEEEECCCCcEEEEEe
Q 016769 249 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS--CVIKKEINLERPGISGTSIRPDSKIAATAG 326 (383)
Q Consensus 249 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~--~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~ 326 (383)
+...++..+.+|...|.++.|. ++..+++++.|++|++||+...... ......+..+...+..++|+|++++|++|+
T Consensus 649 ~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 649 NPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred CCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 7655667778899999999996 4567899999999999998743110 001123445666788999999999999999
Q ss_pred CCCcEEEEEcCCCceEEEe-------------cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 327 WDRRVRIYNYRKGSALAIL-------------KYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~~~~~-------------~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.|++|++|+.....++..+ ..|...|.+++|+|++.+|++|+.||.|++|++.
T Consensus 728 ~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~~ 793 (793)
T PLN00181 728 ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEMV 793 (793)
T ss_pred CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEecC
Confidence 9999999998765443221 2355679999999999999999999999999973
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=225.63 Aligned_cols=292 Identities=20% Similarity=0.310 Sum_probs=214.1
Q ss_pred CCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCC
Q 016769 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (383)
Q Consensus 7 ~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (383)
|=+...++.||.+-|+||++.|...+++|||.|++++|||+.+++....+.+|. ..+-.+++++. .-++++++.|+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi--~~vr~vavS~r--HpYlFs~gedk 215 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHI--ETVRGVAVSKR--HPYLFSAGEDK 215 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchh--heeeeeeeccc--CceEEEecCCC
Confidence 334566899999999999999999999999999999999999998877766554 34556666652 36899999999
Q ss_pred eEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 87 ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
.|+.||++..+.++ .+|+.... ++. .++.
T Consensus 216 ~VKCwDLe~nkvIR---------~YhGHlS~-----------------V~~-------------------------L~lh 244 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIR---------HYHGHLSG-----------------VYC-------------------------LDLH 244 (460)
T ss_pred eeEEEechhhhhHH---------Hhccccce-----------------eEE-------------------------Eecc
Confidence 99999998765432 11110000 000 0011
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
+. .-++++|+.|.++|+||+++...+..+..+. ..+....+++. + ..+++|+-|++|++||
T Consensus 245 PT--ldvl~t~grDst~RvWDiRtr~~V~~l~GH~----------~~V~~V~~~~~---d----pqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 245 PT--LDVLVTGGRDSTIRVWDIRTRASVHVLSGHT----------NPVASVMCQPT---D----PQVITGSHDSTVRLWD 305 (460)
T ss_pred cc--ceeEEecCCcceEEEeeecccceEEEecCCC----------CcceeEEeecC---C----CceEEecCCceEEEee
Confidence 11 1255677789999999999999888886431 11111111111 1 1489999999999999
Q ss_pred CCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEe
Q 016769 247 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 326 (383)
Q Consensus 247 l~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~ 326 (383)
++.++ ...++..|...|.+++.+|....+++++.|+ |+.|++-.. ..+ ..+..+..-+++++.+.|+ ++++|+
T Consensus 306 l~agk-t~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g--~f~--~nlsgh~~iintl~~nsD~-v~~~G~ 378 (460)
T KOG0285|consen 306 LRAGK-TMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG--EFL--QNLSGHNAIINTLSVNSDG-VLVSGG 378 (460)
T ss_pred eccCc-eeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCcc--chh--hccccccceeeeeeeccCc-eEEEcC
Confidence 99854 4677888999999999999988889988885 899987533 222 2244555678899998776 788999
Q ss_pred CCCcEEEEEcCCCceEEEec-----c---cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 327 WDRRVRIYNYRKGSALAILK-----Y---HHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~~~~~~-----~---h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.+|.+..||.+++..+...+ | -+..|.+.+|...|..|++|..|.+|++|.-+
T Consensus 379 dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 379 DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred CceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 99999999999886554331 1 24567888898888999999999999999764
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=247.78 Aligned_cols=145 Identities=23% Similarity=0.407 Sum_probs=132.0
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
++++++.|++.++|.... ..|++.+.+|...|.|+.|+|...++++||.|.++++||.......+.+ ..|...|.
T Consensus 507 YFatas~D~tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF----~GH~~~V~ 581 (707)
T KOG0263|consen 507 YFATASHDQTARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF----TGHKGPVT 581 (707)
T ss_pred EEEecCCCceeeeeeccc-CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe----cCCCCceE
Confidence 577889999999998765 4578889999999999999999999999999999999999876554443 56778999
Q ss_pred EEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 312 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
+++|+|+|++|++|+.|+.|++||+..++.+..+.+|.+.|.++.||.||..||+||.|+.|++||+..+
T Consensus 582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998643
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-30 Score=226.15 Aligned_cols=288 Identities=22% Similarity=0.390 Sum_probs=210.8
Q ss_pred eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEE
Q 016769 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~ 90 (383)
+.+|++|.++|++++|+|++++|++++.||.+++|+..+.+.......|. ..+..+.+.+. ++.+++++.|+.+++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~--~~~l~~~~~~~~i~i 77 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT--GPVRDVAASAD--GTYLASGSSDKTIRL 77 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCC--cceeEEEECCC--CCEEEEEcCCCeEEE
Confidence 46788999999999999999999999999999999998765444433332 33457777773 468999999999999
Q ss_pred eecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCC
Q 016769 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGP 170 (383)
Q Consensus 91 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (383)
||+++++... .+..+.. .+. ...+.+. .
T Consensus 78 ~~~~~~~~~~----~~~~~~~----------------------~i~-------------------------~~~~~~~-~ 105 (289)
T cd00200 78 WDLETGECVR----TLTGHTS----------------------YVS-------------------------SVAFSPD-G 105 (289)
T ss_pred EEcCcccceE----EEeccCC----------------------cEE-------------------------EEEEcCC-C
Confidence 9998653110 0000000 000 0001122 2
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCC
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 250 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~ 250 (383)
+ +++++..++.+++||+++.+....+... .....++ .+.+. ...+++++.|+.|++||+++.
T Consensus 106 ~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~~i~~~---~~~~~----~~~l~~~~~~~~i~i~d~~~~ 167 (289)
T cd00200 106 R-ILSSSSRDKTIKVWDVETGKCLTTLRGH----------TDWVNSV---AFSPD----GTFVASSSQDGTIKLWDLRTG 167 (289)
T ss_pred C-EEEEecCCCeEEEEECCCcEEEEEeccC----------CCcEEEE---EEcCc----CCEEEEEcCCCcEEEEEcccc
Confidence 3 3444555789999999977765555411 1112222 23332 124556666999999999863
Q ss_pred CCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCc
Q 016769 251 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 330 (383)
Q Consensus 251 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~ 330 (383)
.+...+..|..++.++.+++++..+++++.|+.+++||+..... ......+...+.++.|+|++.++++++.|+.
T Consensus 168 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 242 (289)
T cd00200 168 -KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC----LGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242 (289)
T ss_pred -ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce----ecchhhcCCceEEEEEcCCCcEEEEEcCCCc
Confidence 34666778888999999999988889999999999999875321 1222244557999999999888888888999
Q ss_pred EEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 331 VRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 331 i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
|++||+.+++....+..|...|.+++|+|++++|++++.|+.|++|+
T Consensus 243 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999998888889999999999999999999999999999996
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-30 Score=227.09 Aligned_cols=290 Identities=18% Similarity=0.304 Sum_probs=211.4
Q ss_pred eeeeeecCCceeeEEEeCCCC-eEEEecCCCeEEEeeCccc--ccc--cccc--------cccccceeeeeeecCCCCcc
Q 016769 11 VAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQH--RTV--SSSW--------VHSAAHGIVSVATGPSIGLN 77 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~-~L~sgs~D~~v~vW~~~~~--~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~ 77 (383)
..++.+|+.+|.+.+++|-.. .|++|+.|-+.|+|++... ++. ..++ .-.....+.++++.. +|+
T Consensus 171 ~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~--~G~ 248 (524)
T KOG0273|consen 171 KAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN--DGT 248 (524)
T ss_pred ceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC--CCC
Confidence 334444999999999999877 9999999999999998641 111 1111 001224688888887 478
Q ss_pred eeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCC
Q 016769 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNR 157 (383)
Q Consensus 78 ~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (383)
.|++|+.||.+|+|+...... . ++.. .+.| ++...+
T Consensus 249 ~LatG~~~G~~riw~~~G~l~-~----tl~~----------HkgP------------I~slKW----------------- 284 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDGNLI-S----TLGQ----------HKGP------------IFSLKW----------------- 284 (524)
T ss_pred eEEEeecCcEEEEEecCchhh-h----hhhc----------cCCc------------eEEEEE-----------------
Confidence 999999999999999754321 1 0000 0000 111011
Q ss_pred ccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEe
Q 016769 158 SFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 237 (383)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~ 237 (383)
...| .|+ .+++-|+++-+||..++..-..+...+.+ . .-+. +. ++..+++++
T Consensus 285 --------nk~G-~yi-lS~~vD~ttilwd~~~g~~~q~f~~~s~~---~---------lDVd-W~-----~~~~F~ts~ 336 (524)
T KOG0273|consen 285 --------NKKG-TYI-LSGGVDGTTILWDAHTGTVKQQFEFHSAP---A---------LDVD-WQ-----SNDEFATSS 336 (524)
T ss_pred --------cCCC-CEE-EeccCCccEEEEeccCceEEEeeeeccCC---c---------cceE-Ee-----cCceEeecC
Confidence 0112 244 45677899999999887754433321110 0 0011 11 122478899
Q ss_pred CCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC
Q 016769 238 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 317 (383)
Q Consensus 238 ~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p 317 (383)
.|+.|+++.+.. ..|..++.+|..+|.++.|++.+..|++++.|++++||++....... .+..|...|..+.++|
T Consensus 337 td~~i~V~kv~~-~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~----~l~~Hskei~t~~wsp 411 (524)
T KOG0273|consen 337 TDGCIHVCKVGE-DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH----DLQAHSKEIYTIKWSP 411 (524)
T ss_pred CCceEEEEEecC-CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh----hhhhhccceeeEeecC
Confidence 999999999876 56788999999999999999999999999999999999976544322 2345666788888887
Q ss_pred CCc---------EEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 318 DSK---------IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 318 ~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.+. .+++++.|.+|++||+.++.++.++..|+.+|.+|+|||+|+++|+|+.||.|.+|+.-
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 653 69999999999999999999999999999999999999999999999999999999873
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=231.57 Aligned_cols=292 Identities=20% Similarity=0.314 Sum_probs=215.3
Q ss_pred CCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccc--ccccccccccceeeeeeecCCCCcceeEeccc
Q 016769 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (383)
Q Consensus 7 ~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (383)
|.+...++..|.+.|..+.|-++...|+||+.|..|++|++...+. ...+. +....+..+.+.+ ++..+++++.
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa--Gs~g~it~~d~d~--~~~~~iAas~ 239 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA--GSLGNITSIDFDS--DNKHVIAASN 239 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh--ccCCCcceeeecC--CCceEEeecC
Confidence 4445567889999999999999999999999999999999987763 22322 2334678888887 4688999999
Q ss_pred CCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 85 D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
|+.+++|++....... +...|..++.-.+
T Consensus 240 d~~~r~Wnvd~~r~~~-------TLsGHtdkVt~ak-------------------------------------------- 268 (459)
T KOG0288|consen 240 DKNLRLWNVDSLRLRH-------TLSGHTDKVTAAK-------------------------------------------- 268 (459)
T ss_pred CCceeeeeccchhhhh-------hhcccccceeeeh--------------------------------------------
Confidence 9999999998764211 1111111111000
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEE
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~ 244 (383)
+... ...+++|+.|++|++|||....+..+.-.. .. |..+.. +...+++|+.|++|++
T Consensus 269 ~~~~--~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~---------S~----cnDI~~-------~~~~~~SgH~DkkvRf 326 (459)
T KOG0288|consen 269 FKLS--HSRVVSGSADRTIKLWDLQKAYCSKTVLPG---------SQ----CNDIVC-------SISDVISGHFDKKVRF 326 (459)
T ss_pred hhcc--ccceeeccccchhhhhhhhhhheecccccc---------cc----ccceEe-------cceeeeecccccceEE
Confidence 0000 012678899999999999886665433211 00 111110 0123678999999999
Q ss_pred EeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEE
Q 016769 245 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 324 (383)
Q Consensus 245 wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s 324 (383)
||++++.. ......+. .|.+++...++..+++++.|.++.+.|+........+...-.......+.+.|||++.|+++
T Consensus 327 wD~Rs~~~-~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA 404 (459)
T KOG0288|consen 327 WDIRSADK-TRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAA 404 (459)
T ss_pred EeccCCce-eeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeee
Confidence 99998543 45555554 89999999999999999999999999998776555554433333445788999999999999
Q ss_pred EeCCCcEEEEEcCCCceEEEeccccc--ceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 325 AGWDRRVRIYNYRKGSALAILKYHHA--TCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 325 ~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
||.||.|+||++.+++..+.++.... .|.+++|+|.|+.|++++.+..+.+|.
T Consensus 405 GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 405 GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999999887765433 599999999999999999999999994
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=213.11 Aligned_cols=288 Identities=21% Similarity=0.289 Sum_probs=203.9
Q ss_pred eeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEe
Q 016769 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~W 91 (383)
-.|.||..+++.|.|+.+|.+|+|++.|.+..||...++.++....+|.. .+.++.... +...++||+.|.++++|
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtG--avW~~Did~--~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG--AVWCCDIDW--DSKHLITGSADQTAKLW 79 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCc--eEEEEEecC--CcceeeeccccceeEEE
Confidence 36899999999999999999999999999999999999999988887763 466666665 45789999999999999
Q ss_pred ecCCCCCCCCCeeeeecCc-eeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCC
Q 016769 92 DIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGP 170 (383)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (383)
|+++|.++. ...... ... ..++..|+
T Consensus 80 Dv~tGk~la----~~k~~~~Vk~-------------------------------------------------~~F~~~gn 106 (327)
T KOG0643|consen 80 DVETGKQLA----TWKTNSPVKR-------------------------------------------------VDFSFGGN 106 (327)
T ss_pred EcCCCcEEE----EeecCCeeEE-------------------------------------------------EeeccCCc
Confidence 999985321 111110 000 11222233
Q ss_pred ceeeecc---CCcceEEEEecCCCC-------eeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC
Q 016769 171 KYMAVAG---EQLSEVEIWDLNTAE-------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 240 (383)
Q Consensus 171 ~~~~~~g---~~~~~i~~Wdl~~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg 240 (383)
.++++.. +..+.|.++|++... +..+++.+ ..... . ..+.|.+ ..+++|.+||
T Consensus 107 ~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~----------~skit-~--a~Wg~l~----~~ii~Ghe~G 169 (327)
T KOG0643|consen 107 LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP----------DSKIT-S--ALWGPLG----ETIIAGHEDG 169 (327)
T ss_pred EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC----------cccee-e--eeecccC----CEEEEecCCC
Confidence 2222221 122468888887432 23333211 11111 1 1133322 3589999999
Q ss_pred cEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCc
Q 016769 241 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK 320 (383)
Q Consensus 241 ~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 320 (383)
.|.+||++++...+...+.|...|+.+.++++...+++++.|.+-++||....+ ..+....+ -.+++.+++|...
T Consensus 170 ~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~----v~Kty~te-~PvN~aaisP~~d 244 (327)
T KOG0643|consen 170 SISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE----VLKTYTTE-RPVNTAAISPLLD 244 (327)
T ss_pred cEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecccee----eEEEeeec-ccccceecccccc
Confidence 999999998766667778899999999999999999999999999999987432 22333322 4689999999877
Q ss_pred EEEEEeCCCcE--------------EEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 321 IAATAGWDRRV--------------RIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 321 ~l~s~~~dg~i--------------~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
.++.|+....- |.|++-.-+.+..+++|-++|++|+|||||+..+||++||.|++.-+
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 77776643311 11122122346788999999999999999999999999999999754
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-32 Score=228.72 Aligned_cols=230 Identities=19% Similarity=0.377 Sum_probs=181.7
Q ss_pred CCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCC
Q 016769 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~ 97 (383)
...|+|+.| |...++||..|++|++||.....++..+.+|. +++.++.+.. ..++||++|.||++||+++++
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHt--GSVLCLqyd~----rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHT--GSVLCLQYDE----RVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCC--CcEEeeeccc----eEEEecCCCceEEEEeccCCc
Confidence 578999999 45589999999999999999888888887775 4688887764 678899999999999999986
Q ss_pred CCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeecc
Q 016769 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAG 177 (383)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 177 (383)
++.+- .|.| .. .+
T Consensus 269 ~l~tl--------ihHc--------------------------------------------ea-----------VL---- 281 (499)
T KOG0281|consen 269 PLNTL--------IHHC--------------------------------------------EA-----------VL---- 281 (499)
T ss_pred hhhHH--------hhhc--------------------------------------------ce-----------eE----
Confidence 42210 0000 00 00
Q ss_pred CCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC--cee
Q 016769 178 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLT 255 (383)
Q Consensus 178 ~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~--~~~ 255 (383)
.++ |. + ..+++++.|.+|.+||+.++.. ..+
T Consensus 282 ----hlr-------------------------------------f~----n--g~mvtcSkDrsiaVWdm~sps~it~rr 314 (499)
T KOG0281|consen 282 ----HLR-------------------------------------FS----N--GYMVTCSKDRSIAVWDMASPTDITLRR 314 (499)
T ss_pred ----EEE-------------------------------------Ee----C--CEEEEecCCceeEEEeccCchHHHHHH
Confidence 000 10 1 1478999999999999987642 235
Q ss_pred eeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEE
Q 016769 256 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 335 (383)
Q Consensus 256 ~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd 335 (383)
.+-+|..+|+.+.|+.. ++++++.|.+|++|++... .+...+..|.-+|.++.+ .++++++|++|.+|++||
T Consensus 315 VLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~----efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwd 386 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTC----EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWD 386 (499)
T ss_pred HHhhhhhheeeeccccc--eEEEecCCceEEEEeccce----eeehhhhcccccceehhc--cCeEEEecCCCceEEEEe
Confidence 66789999999999865 6789999999999998632 233445667677887766 578999999999999999
Q ss_pred cCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 336 YRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 336 ~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+..|.++..++||++-|.++.| |.+.+++|+.||+|++||+.
T Consensus 387 i~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 387 IECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred ccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecc
Confidence 9999999999999999999999 56889999999999999984
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=235.22 Aligned_cols=186 Identities=19% Similarity=0.382 Sum_probs=150.4
Q ss_pred eeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC
Q 016769 172 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~ 251 (383)
.++.+|. .+.+++|+..+.+++.++.- +..+|. .|.|.. ..++.|...|.+.+||+.+.
T Consensus 386 ~~~~Sga-~~SikiWn~~t~kciRTi~~------------~y~l~~---~Fvpgd----~~Iv~G~k~Gel~vfdlaS~- 444 (888)
T KOG0306|consen 386 ILLASGA-GESIKIWNRDTLKCIRTITC------------GYILAS---KFVPGD----RYIVLGTKNGELQVFDLASA- 444 (888)
T ss_pred eeeeecC-CCcEEEEEccCcceeEEecc------------ccEEEE---EecCCC----ceEEEeccCCceEEEEeehh-
Confidence 3444443 46899999999999888853 133332 355543 36899999999999999874
Q ss_pred CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCC------ee---EEeeeeecCCCCeEEEEECCCCcEE
Q 016769 252 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG------SC---VIKKEINLERPGISGTSIRPDSKIA 322 (383)
Q Consensus 252 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~------~~---~~~~~~~~~~~~i~~~~~~p~~~~l 322 (383)
..+.+++.|.+.+..++..|++.++++||+|++|++||+..... +. ..+..++. ...+.++++|||++++
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel-~ddvL~v~~Spdgk~L 523 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL-EDDVLCVSVSPDGKLL 523 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec-cccEEEEEEcCCCcEE
Confidence 45677889999999999999999999999999999999742111 10 00111222 3569999999999999
Q ss_pred EEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 323 ATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 323 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
|.+=.|.++++|-+++.+..-.+-||.-+|.|+.+|||+++++|||.|.+|++|-+.
T Consensus 524 aVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred EEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 999999999999999999998999999999999999999999999999999999764
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=213.47 Aligned_cols=328 Identities=16% Similarity=0.197 Sum_probs=218.4
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
..+.+|.+|+++|.+++.+|+.++++|||.|..-.||+..++..+..+..|. ..+.++.|+- ++.+|+||+.+|.|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHK--DSVt~~~Fsh--dgtlLATGdmsG~v 130 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHK--DSVTCCSFSH--DGTLLATGDMSGKV 130 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCC--CceEEEEEcc--CceEEEecCCCccE
Confidence 4567899999999999999999999999999999999998888666665554 4688999987 47899999999999
Q ss_pred EEeecCCCCCCCCCeeeee--cCceeeeeEEeecccccccccc---CCCCccceeccCcccccCccccccccCCccceec
Q 016769 89 KCWDIENGGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQA---NEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
++|.+.++... ..+- .....+-.++ |.+....+ .+...+|.+..+... ....+ ........
T Consensus 131 ~v~~~stg~~~----~~~~~e~~dieWl~WH----p~a~illAG~~DGsvWmw~ip~~~~~-kv~~G-----h~~~ct~G 196 (399)
T KOG0296|consen 131 LVFKVSTGGEQ----WKLDQEVEDIEWLKWH----PRAHILLAGSTDGSVWMWQIPSQALC-KVMSG-----HNSPCTCG 196 (399)
T ss_pred EEEEcccCceE----EEeecccCceEEEEec----ccccEEEeecCCCcEEEEECCCccee-eEecC-----CCCCcccc
Confidence 99999887421 1110 1111111111 11111111 111122222111000 00000 01112223
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
.+.++|++. +.+..|++|++|++.+++++.++.+......+ |+... .....++.|..++.++
T Consensus 197 ~f~pdGKr~--~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~---------~~~~~-------~~~~~~~~g~~e~~~~ 258 (399)
T KOG0296|consen 197 EFIPDGKRI--LTGYDDGTIIVWNPKTGQPLHKITQAEGLELP---------CISLN-------LAGSTLTKGNSEGVAC 258 (399)
T ss_pred cccCCCceE--EEEecCceEEEEecCCCceeEEecccccCcCC---------ccccc-------cccceeEeccCCccEE
Confidence 345777754 34566899999999999998888753311111 11110 0011345566666666
Q ss_pred EEeCCCCCCcee-------eeeccc---cCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEE
Q 016769 244 VWDIRNPGIPLT-------AMKVHL---EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGT 313 (383)
Q Consensus 244 ~wdl~~~~~~~~-------~~~~h~---~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~ 313 (383)
+-...+++.... ....+. +.|..+.++......+.|+-||+|.|||+...+-+.. ..+..+|..+
T Consensus 259 ~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~-----c~he~~V~~l 333 (399)
T KOG0296|consen 259 GVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI-----CEHEDGVTKL 333 (399)
T ss_pred EEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee-----ccCCCceEEE
Confidence 665444321100 011233 3445555555555668889999999999986553332 2345679999
Q ss_pred EECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 314 SIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 314 ~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
.|-+ ..||++++.||+|+.||.++|+...++.||+..|.+.+++|+.++++|+|.|++.++|+.
T Consensus 334 ~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 334 KWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred EEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 9988 679999999999999999999999999999999999999999999999999999999987
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=204.68 Aligned_cols=252 Identities=19% Similarity=0.331 Sum_probs=188.8
Q ss_pred CCCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccC
Q 016769 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
.|+.....|..|+++|+++.|+.||++.+|++.|.+||+||+..+.++.....|+. .+.-++.+- +..+|++||.|
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~--EVlD~~~s~--Dnskf~s~GgD 80 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH--EVLDAALSS--DNSKFASCGGD 80 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCc--eeeeccccc--cccccccCCCC
Confidence 34446678999999999999999999999999999999999998888877766653 344444433 45789999999
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
..+.+||+++|+..++ .+ .|
T Consensus 81 k~v~vwDV~TGkv~Rr----~r---gH----------------------------------------------------- 100 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRR----FR---GH----------------------------------------------------- 100 (307)
T ss_pred ceEEEEEcccCeeeee----cc---cc-----------------------------------------------------
Confidence 9999999998853220 00 00
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEE
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~w 245 (383)
+.+-++|++ .+ ....+++|+-|.++++|
T Consensus 101 -----------~aqVNtV~f------------Ne-----------------------------esSVv~SgsfD~s~r~w 128 (307)
T KOG0316|consen 101 -----------LAQVNTVRF------------NE-----------------------------ESSVVASGSFDSSVRLW 128 (307)
T ss_pred -----------cceeeEEEe------------cC-----------------------------cceEEEeccccceeEEE
Confidence 000112221 00 00136678888888888
Q ss_pred eCCCCC-CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEE
Q 016769 246 DIRNPG-IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 324 (383)
Q Consensus 246 dl~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s 324 (383)
|.|+.. .|++.+....+.|.++.+.. -.++.|+.||+++.||++..+. ...+....|+++.|++|++...+
T Consensus 129 DCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~DGtvRtydiR~G~l------~sDy~g~pit~vs~s~d~nc~La 200 (307)
T KOG0316|consen 129 DCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSVDGTVRTYDIRKGTL------SSDYFGHPITSVSFSKDGNCSLA 200 (307)
T ss_pred EcccCCCCccchhhhhcCceeEEEecc--cEEEeeccCCcEEEEEeeccee------ehhhcCCcceeEEecCCCCEEEE
Confidence 887643 35666666666777776653 3468899999999999986542 22345578999999999999999
Q ss_pred EeCCCcEEEEEcCCCceEEEecccccceeEE--EEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 325 AGWDRRVRIYNYRKGSALAILKYHHATCNAV--SFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 325 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v--~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
++.|+++++.|-++|+.++.+++|++.-..+ +++....++++||+||.|.+||+-+.
T Consensus 201 ~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 201 SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 9999999999999999999999999866555 45555569999999999999999654
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=233.75 Aligned_cols=302 Identities=17% Similarity=0.240 Sum_probs=218.4
Q ss_pred CeeeeeecCCceeeEEE-eCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 10 PVAVLRGHRASVTDVCF-HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f-~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
++..+-|-.+.|++|+| .|+.++||.++.-..+|+++..+..|. .+.+|. ..+.++.... .+..|+|||.|+++
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~--e~vlSL~~~~--~g~llat~sKD~sv 389 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHT--EAVLSLDVWS--SGDLLATGSKDKSV 389 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCch--hheeeeeecc--cCcEEEEecCCceE
Confidence 34456688999999998 567789999999999999998876665 444444 3466665222 24588999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++|.++++..... .+. ...++... .+++ .+...
T Consensus 390 ilWr~~~~~~~~~---~~a--------------------~~~gH~~s--------------------vgav----a~~~~ 422 (775)
T KOG0319|consen 390 ILWRLNNNCSKSL---CVA--------------------QANGHTNS--------------------VGAV----AGSKL 422 (775)
T ss_pred EEEEecCCcchhh---hhh--------------------hhcccccc--------------------ccee----eeccc
Confidence 9999965421110 000 00000000 0000 01111
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
+.. +++++++|.++++|++...+.-.. +......+....+...+.|.++ .|+ ...+++|++|++.+||++.
T Consensus 423 ~as-ffvsvS~D~tlK~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vai---a~n----dkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 423 GAS-FFVSVSQDCTLKLWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAI---APN----DKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred Ccc-EEEEecCCceEEEecCCCcccccc-cceehhhHHHHhhcccccceEe---cCC----CceEEecccccceeeeccc
Confidence 222 456678899999999976221100 0000000111223344555543 333 2468899999999999998
Q ss_pred CCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC
Q 016769 249 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 328 (383)
Q Consensus 249 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d 328 (383)
+ .....++.+|...|.++.|++..+.++++|.|.+|+||.+++.++ + +.+..|...|..+.|-.+++.|+|++.|
T Consensus 494 ~-~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC--l--kT~eGH~~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 494 Q-LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC--L--KTFEGHTSAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred C-ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecccee--e--eeecCccceeEeeeeeeCCcEEEeccCC
Confidence 5 456789999999999999999888899999999999999986643 2 4566777889999999999999999999
Q ss_pred CcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 329 RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 329 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
|-|++|++.++.++.++..|...|++++-+|+..+++||+.||.|.+|.
T Consensus 569 GliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred CcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 9999999999999999999999999999999999999999999999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=203.03 Aligned_cols=255 Identities=19% Similarity=0.268 Sum_probs=179.9
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
.|+..|.||.-.|..+..++||++.+|+|.|+++|+||+.++++...+.+|. ..+.++++++ +.++++||+.|.||
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~--~dVlsva~s~--dn~qivSGSrDkTi 129 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT--KDVLSVAFST--DNRQIVSGSRDKTI 129 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC--CceEEEEecC--CCceeecCCCccee
Confidence 3678899999999999999999999999999999999999887666655554 5789999998 46899999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++||..... .+.+..... ...+. ++ -++|.
T Consensus 130 klwnt~g~c-----------------k~t~~~~~~--------~~WVs---------------------cv----rfsP~ 159 (315)
T KOG0279|consen 130 KLWNTLGVC-----------------KYTIHEDSH--------REWVS---------------------CV----RFSPN 159 (315)
T ss_pred eeeeecccE-----------------EEEEecCCC--------cCcEE---------------------EE----EEcCC
Confidence 999986431 111111000 00000 00 01222
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
....++++++.|+++|+||+++.+....+.. +.+.. .++ .++|+.+ ..++|+.||.+.+||++
T Consensus 160 ~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g----------h~~~v--~t~-~vSpDGs----lcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 160 ESNPIIVSASWDKTVKVWNLRNCQLRTTFIG----------HSGYV--NTV-TVSPDGS----LCASGGKDGEAMLWDLN 222 (315)
T ss_pred CCCcEEEEccCCceEEEEccCCcchhhcccc----------ccccE--EEE-EECCCCC----EEecCCCCceEEEEEcc
Confidence 2234667788899999999999775444432 11222 222 2455432 46789999999999999
Q ss_pred CCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeec-----CCCCeEEEEECCCCcEEE
Q 016769 249 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-----ERPGISGTSIRPDSKIAA 323 (383)
Q Consensus 249 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~-----~~~~i~~~~~~p~~~~l~ 323 (383)
.... +..+ .|...|.++.|.|..-. +....+..|+|||++.......+...... ......++++++||+.|.
T Consensus 223 ~~k~-lysl-~a~~~v~sl~fspnryw-L~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf 299 (315)
T KOG0279|consen 223 EGKN-LYSL-EAFDIVNSLCFSPNRYW-LCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLF 299 (315)
T ss_pred CCce-eEec-cCCCeEeeEEecCCcee-EeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEE
Confidence 8554 4333 57889999999997644 44456777999999876543333322211 133456788999999999
Q ss_pred EEeCCCcEEEEEcC
Q 016769 324 TAGWDRRVRIYNYR 337 (383)
Q Consensus 324 s~~~dg~i~iwd~~ 337 (383)
+|-.|+.|++|.+.
T Consensus 300 ~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 300 AGYTDNVIRVWQVA 313 (315)
T ss_pred eeecCCcEEEEEee
Confidence 99999999999874
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-28 Score=196.95 Aligned_cols=263 Identities=17% Similarity=0.261 Sum_probs=189.5
Q ss_pred CCceeeEEEeCCCCeEEEecCCCeEEEeeCccccc--ccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCC
Q 016769 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~ 95 (383)
.+.|+.++..||++.||+++. ..||+||+.+.+. +.....| ...+.++.|.. ++++++|||.||++||||+..
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h--~kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGH--TKNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRS 114 (311)
T ss_pred ccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEecc--CCceEEEEEee--cCeEEEecCCCceEEEEeccC
Confidence 357899999999999997665 4789999977654 3333333 34689999987 579999999999999999976
Q ss_pred CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeee
Q 016769 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAV 175 (383)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (383)
..+-+.- . ..++.++ ..+.+++.. +.
T Consensus 115 ~~~qR~~--------------~-----------~~spVn~---------------------------vvlhpnQte--Li 140 (311)
T KOG0315|consen 115 LSCQRNY--------------Q-----------HNSPVNT---------------------------VVLHPNQTE--LI 140 (311)
T ss_pred cccchhc--------------c-----------CCCCcce---------------------------EEecCCcce--EE
Confidence 4331100 0 0000000 001122222 34
Q ss_pred ccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC-----C
Q 016769 176 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-----P 250 (383)
Q Consensus 176 ~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~-----~ 250 (383)
+|++.+.|++|||....+-..+..+.. . .+..++ ..|+ ..-++.+...|...+|++-. .
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe~~-------~--~i~sl~---v~~d----gsml~a~nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPEDD-------T--SIQSLT---VMPD----GSMLAAANNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCCCC-------c--ceeeEE---EcCC----CcEEEEecCCccEEEEEccCCCcccc
Confidence 578889999999988765433321110 0 000111 1222 12466678889999999743 2
Q ss_pred CCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCc
Q 016769 251 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 330 (383)
Q Consensus 251 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~ 330 (383)
-.|+..++.|+..+...-++|+.++++++|.|++++||+.+.. .+....++.+...+...+||.|++||++|+.|+.
T Consensus 205 l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~ 281 (311)
T KOG0315|consen 205 LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT 281 (311)
T ss_pred ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCc
Confidence 3567788999999999999999999999999999999998754 3444556667778999999999999999999999
Q ss_pred EEEEEcCCCceEEEecccccceeEEEEe
Q 016769 331 VRIYNYRKGSALAILKYHHATCNAVSFS 358 (383)
Q Consensus 331 i~iwd~~~~~~~~~~~~h~~~v~~v~~s 358 (383)
+++||+..++.+..+++|.+...|++..
T Consensus 282 ~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 282 ARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeecccccCceeeecCCcccccEEEEee
Confidence 9999999999999999999988887764
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=206.24 Aligned_cols=248 Identities=22% Similarity=0.352 Sum_probs=180.9
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
=+.+|+||++.|+..+++.+...-||+++|-+-+|||..++-.+..+. +.|.+.+++|+. +.++|++||.+..+|
T Consensus 51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~---hkhivk~~af~~--ds~~lltgg~ekllr 125 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE---HKHIVKAVAFSQ--DSNYLLTGGQEKLLR 125 (334)
T ss_pred cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh---hhheeeeEEecc--cchhhhccchHHHhh
Confidence 356899999999999999999999999999999999999887776542 346788899987 468999999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
++|++.+++... .+..+...+ + . ..-|.. .
T Consensus 126 vfdln~p~App~---E~~ghtg~I-------------------r------------------------~---v~wc~e-D 155 (334)
T KOG0278|consen 126 VFDLNRPKAPPK---EISGHTGGI-------------------R------------------------T---VLWCHE-D 155 (334)
T ss_pred hhhccCCCCCch---hhcCCCCcc-------------------e------------------------e---EEEecc-C
Confidence 999987654221 000000000 0 0 000111 1
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
+.++.+ ..|++||+||.+++..+.++.-+..+.|...+..+ ++++-...+.|++||..+
T Consensus 156 -~~iLSS-add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG-------------------~ilTia~gssV~Fwdaks 214 (334)
T KOG0278|consen 156 -KCILSS-ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG-------------------RILTIAYGSSVKFWDAKS 214 (334)
T ss_pred -ceEEee-ccCCceEEEEeccCcEEEEEecCCCCcceeeccCC-------------------CEEEEecCceeEEecccc
Confidence 223333 66899999999999988888765544433322222 244555567788888665
Q ss_pred CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCC
Q 016769 250 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 329 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg 329 (383)
-. .++..+ +. ..|.+.+++|+..++++|+.|.
T Consensus 215 f~-~lKs~k--------------------------------------------~P---~nV~SASL~P~k~~fVaGged~ 246 (334)
T KOG0278|consen 215 FG-LLKSYK--------------------------------------------MP---CNVESASLHPKKEFFVAGGEDF 246 (334)
T ss_pred cc-ceeecc--------------------------------------------Cc---cccccccccCCCceEEecCcce
Confidence 21 111110 00 1366777899999999999999
Q ss_pred cEEEEEcCCCceEEEe-cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 330 RVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 330 ~i~iwd~~~~~~~~~~-~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
.++.||..++..+..+ ++|.++|.||.|+|||...|+||+||+|+||...+-
T Consensus 247 ~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 247 KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 9999999999999886 899999999999999999999999999999998653
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=226.32 Aligned_cols=292 Identities=24% Similarity=0.353 Sum_probs=215.4
Q ss_pred eeeeeec-CCceeeEEEeCCCCeEEEecCCCeEEEeeCcccc--cccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 11 VAVLRGH-RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 11 ~~~l~gH-~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
..++.+| ...|.++.|+++|+.|++++.|+.+++|++...+ ....+..| ...+..++|+++ +..+++++.|.+
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h--~~~v~~~~fs~d--~~~l~s~s~D~t 226 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGH--TRGVSDVAFSPD--GSYLLSGSDDKT 226 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccc--ccceeeeEECCC--CcEEEEecCCce
Confidence 4556566 7999999999999999999999999999996665 44444333 356888999984 679999999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
+|+||++.... ...++..+.. .....++.+
T Consensus 227 iriwd~~~~~~---~~~~l~gH~~-----------------------------------------------~v~~~~f~p 256 (456)
T KOG0266|consen 227 LRIWDLKDDGR---NLKTLKGHST-----------------------------------------------YVTSVAFSP 256 (456)
T ss_pred EEEeeccCCCe---EEEEecCCCC-----------------------------------------------ceEEEEecC
Confidence 99999943310 0111111100 001112334
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
.+ + ++++|+.|++||+||++++++...+..+. +.+ ....|.++. ..+++++.|+.|++||+
T Consensus 257 ~g-~-~i~Sgs~D~tvriWd~~~~~~~~~l~~hs----------~~i---s~~~f~~d~----~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 257 DG-N-LLVSGSDDGTVRIWDVRTGECVRKLKGHS----------DGI---SGLAFSPDG----NLLVSASYDGTIRVWDL 317 (456)
T ss_pred CC-C-EEEEecCCCcEEEEeccCCeEEEeeeccC----------Cce---EEEEECCCC----CEEEEcCCCccEEEEEC
Confidence 45 2 56778889999999999988887776421 111 112344332 35778899999999999
Q ss_pred CCCCC-ceeeeecccc--CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC---CeEEEEECCCCcE
Q 016769 248 RNPGI-PLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP---GISGTSIRPDSKI 321 (383)
Q Consensus 248 ~~~~~-~~~~~~~h~~--~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~---~i~~~~~~p~~~~ 321 (383)
.+... +...+..+.. ++.++.|++++.+++++..|+.+++||+......... ..+.. .+....+++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 318 ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY----TGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee----cccCCcceeEecccccCCCCe
Confidence 88553 2455555554 4999999999999999999999999999854432221 12222 3445556789999
Q ss_pred EEEEeCCCcEEEEEcCCCceEEEeccc-ccceeEEEEeCCCCEEEEEe--CCCcEEEEeCC
Q 016769 322 AATAGWDRRVRIYNYRKGSALAILKYH-HATCNAVSFSSDCKLMASAS--EDSTVALWELY 379 (383)
Q Consensus 322 l~s~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~v~~spd~~~las~s--~d~~i~~w~~~ 379 (383)
+++|+.|+.|++||+.++..+..+.+| ...+..++++|..+++++++ .|+.|++|...
T Consensus 394 i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 394 IYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999999999888899999 88899999999999999999 79999999863
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=208.14 Aligned_cols=309 Identities=20% Similarity=0.316 Sum_probs=207.0
Q ss_pred CCCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCC-CCcceeEeccc
Q 016769 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS-IGLNKVISQGR 84 (383)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~ 84 (383)
+||+|.+-+. |.+-|.+|... +++|+||+.||.+|+|+.. +++...+.+|.. .+.++++... .....|+++|.
T Consensus 94 ~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~--~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 94 TAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTG--PIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred CCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCc--ceeeeEEEecCCccceEEEecC
Confidence 4566665544 88999988876 6799999999999999986 555555555543 3444443322 11246899999
Q ss_pred CCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 85 D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
|.|+++|.++.++.... .++. | .++.. .+.. .+
T Consensus 168 Dqtl~Lw~~~~~~~~~~---~~~~-----~---------------~GHk~-----------------------~V~s-Vs 200 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVK---ALKV-----C---------------RGHKR-----------------------SVDS-VS 200 (423)
T ss_pred CceEEEEEecCchhhhh---HHhH-----h---------------ccccc-----------------------ceeE-EE
Confidence 99999999987642110 0000 0 00000 0000 11
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCCC--eeeEec----------cCcCCCCCCcCCCCC-ceeeEEEeecCCCCCCce
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLH----------QNSCGGSPNFSSKGR-GMCMAVQAYLPSKSQGFV 231 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~~--~~~~~~----------~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~ 231 (383)
...++. .+++|+.|..+++|+.++.. .+.... +......+...-.+. .-++++ .+.. ..
T Consensus 201 v~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V-~w~d-----~~ 272 (423)
T KOG0313|consen 201 VDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV-VWSD-----AT 272 (423)
T ss_pred ecCCCC--eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeE-EEcC-----CC
Confidence 123343 45678889999999943321 111110 000000000000111 111222 2332 12
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
.+.++++|.+|+.||+.+++. ...+. ...+.++++..+....+++|+.|..|++||-+.+.++.. ...+..|.+-|.
T Consensus 273 v~yS~SwDHTIk~WDletg~~-~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v-~~s~~gH~nwVs 349 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETGGL-KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV-SQSLIGHKNWVS 349 (423)
T ss_pred ceEeecccceEEEEEeecccc-eeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCcee-EEeeecchhhhh
Confidence 578999999999999998654 33333 245789999999888899999999999999887766543 344566778899
Q ss_pred EEEECCCCc-EEEEEeCCCcEEEEEcCCCc-eEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 312 GTSIRPDSK-IAATAGWDRRVRIYNYRKGS-ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 312 ~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
++.++|... .|++++.|+++++||+++.+ +++.+.+|...|.++.|+ ++..+++|+.|++|+++.-.
T Consensus 350 svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 350 SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred heecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999999765 68999999999999999887 899999999999999996 67899999999999999764
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-27 Score=216.34 Aligned_cols=292 Identities=22% Similarity=0.360 Sum_probs=211.9
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCC-CeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D-~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
.++.|.=-..+|..++|+.-|++||-|+.. |.+.||+.....-+.....|. ..+.+++.+| ++..+++|+.|+.|
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSp--Dgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSP--DGQLIATGAEDGKV 374 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECC--CCcEEEeccCCCcE
Confidence 445555556789999999999999998887 899999997665555555555 3578899998 57889999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
|+||...+-| ...+.......+ .+ .+...
T Consensus 375 KvWn~~SgfC----------------~vTFteHts~Vt-------------------------------~v----~f~~~ 403 (893)
T KOG0291|consen 375 KVWNTQSGFC----------------FVTFTEHTSGVT-------------------------------AV----QFTAR 403 (893)
T ss_pred EEEeccCceE----------------EEEeccCCCceE-------------------------------EE----EEEec
Confidence 9999987733 222111000000 00 01111
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC-cEEEEeC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDI 247 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg-~i~~wdl 247 (383)
+ ..+.+.+-||+||.||+.....-.++..+. +....|.++. |+ + ..+++|+.|. .|.+|++
T Consensus 404 g--~~llssSLDGtVRAwDlkRYrNfRTft~P~---------p~QfscvavD---~s---G-elV~AG~~d~F~IfvWS~ 465 (893)
T KOG0291|consen 404 G--NVLLSSSLDGTVRAWDLKRYRNFRTFTSPE---------PIQFSCVAVD---PS---G-ELVCAGAQDSFEIFVWSV 465 (893)
T ss_pred C--CEEEEeecCCeEEeeeecccceeeeecCCC---------ceeeeEEEEc---CC---C-CEEEeeccceEEEEEEEe
Confidence 2 234556789999999998887666654321 1122244432 11 1 2466677776 5999999
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 327 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~ 327 (383)
.++ ..+..+.+|.+||.+++|++.+..+++++.|++|++||+-...+.. .++ .....+..++|+|+|+.+++++.
T Consensus 466 qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v---Etl-~i~sdvl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 466 QTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV---ETL-EIRSDVLAVSFRPDGKELAVATL 540 (893)
T ss_pred ecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee---eeE-eeccceeEEEEcCCCCeEEEEEe
Confidence 984 5578899999999999999999999999999999999986543221 111 12356899999999999999999
Q ss_pred CCcEEEEEcCCCceEEEecc--------------------cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 328 DRRVRIYNYRKGSALAILKY--------------------HHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 328 dg~i~iwd~~~~~~~~~~~~--------------------h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
||.|.+||...+.+...+.+ ..+...++++|+||+.+.+|+..+.|.+|++.
T Consensus 541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence 99999999977655433321 12567899999999999999999999999984
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=213.03 Aligned_cols=283 Identities=18% Similarity=0.311 Sum_probs=206.2
Q ss_pred CCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCC
Q 016769 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~ 97 (383)
+.+|+.|++.|+|+.|++|+..|-+.+|+...-.....+..|. ..|.++.++. ++.+++||..+|.||+|+.+-..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHD--s~Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHD--SPVRTMKWSH--NGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhc--ccceeEEEcc--CCCEEEEcCCCceEEecccchhh
Confidence 4589999999999999999999999999975433333333443 2466677776 47899999999999999975321
Q ss_pred CCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeecc
Q 016769 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAG 177 (383)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 177 (383)
. +..+.| +++..+. .++++...+| ++.
T Consensus 172 V--------k~~~ah---------------------------------------h~eaIRd----lafSpnDskF--~t~ 198 (464)
T KOG0284|consen 172 V--------KIIQAH---------------------------------------HAEAIRD----LAFSPNDSKF--LTC 198 (464)
T ss_pred h--------HHhhHh---------------------------------------hhhhhhe----eccCCCCcee--EEe
Confidence 0 000000 0000000 1233444444 345
Q ss_pred CCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeee
Q 016769 178 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 257 (383)
Q Consensus 178 ~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~ 257 (383)
++|++|+|||....+.-..+..+... +.+ ..+.|.. ..+++|+.|..|++||.++ +.++.++
T Consensus 199 SdDg~ikiWdf~~~kee~vL~GHgwd------------Vks-vdWHP~k----gLiasgskDnlVKlWDprS-g~cl~tl 260 (464)
T KOG0284|consen 199 SDDGTIKIWDFRMPKEERVLRGHGWD------------VKS-VDWHPTK----GLIASGSKDNLVKLWDPRS-GSCLATL 260 (464)
T ss_pred cCCCeEEEEeccCCchhheeccCCCC------------cce-eccCCcc----ceeEEccCCceeEeecCCC-cchhhhh
Confidence 67899999999877654444322111 011 1244432 3688999999999999998 4567889
Q ss_pred eccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC-cEEEEEeCCCcEEEEEc
Q 016769 258 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KIAATAGWDRRVRIYNY 336 (383)
Q Consensus 258 ~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~l~s~~~dg~i~iwd~ 336 (383)
..|...|..+.|.+.++.|+++|.|..++++|++.... ++ ....|...+.++.++|-. ..|.+|++||.|..|.+
T Consensus 261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE--l~--~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE--LF--TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH--HH--HhhcchhhheeeccccccccceeeccCCCceEEEec
Confidence 99999999999999999999999999999999973321 11 234466679999999854 68999999999999999
Q ss_pred CCCceEEEe-cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 337 RKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 337 ~~~~~~~~~-~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
...+++..+ .+|...|++++|+|-|.+|++|+.|.++++|.=.
T Consensus 337 ~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 337 GLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 866666544 4799999999999999999999999999999653
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=197.94 Aligned_cols=278 Identities=18% Similarity=0.271 Sum_probs=195.2
Q ss_pred ecCCceeeEEEeC-CCCeEEEecCCCeEEEeeCccc-ccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeec
Q 016769 16 GHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (383)
Q Consensus 16 gH~~~V~~v~f~~-~~~~L~sgs~D~~v~vW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~ 93 (383)
.-.+.|.+|+||| ...+|+.||.|++||+|++... ...... .......+..++++. +++.+++|+-|+.+++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka-~~~~~~PvL~v~Wsd--dgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA-QQSHDGPVLDVCWSD--DGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchh-hhccCCCeEEEEEcc--CCceEEeeccCCceEEEEc
Confidence 4468999999999 5567779999999999999774 322221 123335688888887 4789999999999999999
Q ss_pred CCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCcee
Q 016769 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYM 173 (383)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (383)
+++... .+..+......... + ......+
T Consensus 102 ~S~Q~~-----~v~~Hd~pvkt~~w----------------------------------------------v-~~~~~~c 129 (347)
T KOG0647|consen 102 ASGQVS-----QVAAHDAPVKTCHW----------------------------------------------V-PGMNYQC 129 (347)
T ss_pred cCCCee-----eeeecccceeEEEE----------------------------------------------e-cCCCcce
Confidence 987421 11111000000000 0 0011235
Q ss_pred eeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCc
Q 016769 174 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 253 (383)
Q Consensus 174 ~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~ 253 (383)
++.|+.|.+||+||++...++.++.-+. +.+++.+. . ..++.+..+..|.+|+|+++...
T Consensus 130 l~TGSWDKTlKfWD~R~~~pv~t~~LPe-----------RvYa~Dv~--~-------pm~vVata~r~i~vynL~n~~te 189 (347)
T KOG0647|consen 130 LVTGSWDKTLKFWDTRSSNPVATLQLPE-----------RVYAADVL--Y-------PMAVVATAERHIAVYNLENPPTE 189 (347)
T ss_pred eEecccccceeecccCCCCeeeeeeccc-----------eeeehhcc--C-------ceeEEEecCCcEEEEEcCCCcch
Confidence 6789999999999999988887775432 33443332 1 13566788999999999875432
Q ss_pred eeeeecc-ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCC--CCeeEEeeeee----c-CCCCeEEEEECCCCcEEEEE
Q 016769 254 LTAMKVH-LEPVLCLSIDESCNGGISGGADQKIVLYNLDHS--TGSCVIKKEIN----L-ERPGISGTSIRPDSKIAATA 325 (383)
Q Consensus 254 ~~~~~~h-~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~--~~~~~~~~~~~----~-~~~~i~~~~~~p~~~~l~s~ 325 (383)
.+.++.. ...++|++...+....+.|+..|++.+..++.+ .....++-+-. . .-..|++++|+|....|+++
T Consensus 190 ~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTa 269 (347)
T KOG0647|consen 190 FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTA 269 (347)
T ss_pred hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEe
Confidence 2222211 234788888777777899999999999999875 22222222110 0 12357899999999999999
Q ss_pred eCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEe
Q 016769 326 GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368 (383)
Q Consensus 326 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s 368 (383)
+.||++.+||-+....+++...|..+|.+.+|+.+|.++|.+.
T Consensus 270 GsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 270 GSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 9999999999998888888889999999999999999998753
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=190.19 Aligned_cols=290 Identities=20% Similarity=0.271 Sum_probs=202.1
Q ss_pred CCeeeeeecCCceeeEEEeCC-CCeEEEecCCCeEEEeeCcccc---cccccccccccceeeeeeecCCCCcceeEeccc
Q 016769 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~-~~~L~sgs~D~~v~vW~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (383)
...+.+.||++.|..+|+||. |..|||||.|+.||+|+...+. |...+. ..+...+.+++++|. +++|+++|.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld-~~hkrsVRsvAwsp~--g~~La~aSF 81 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD-DGHKRSVRSVAWSPH--GRYLASASF 81 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc-ccchheeeeeeecCC--CcEEEEeec
Confidence 356789999999999999998 8999999999999999987532 222221 123356889999994 689999999
Q ss_pred CCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 85 D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
|.|+-||.-+.++. -....+.++. ..+.+ .+
T Consensus 82 D~t~~Iw~k~~~ef---------------ecv~~lEGHE------------------------------nEVK~----Va 112 (312)
T KOG0645|consen 82 DATVVIWKKEDGEF---------------ECVATLEGHE------------------------------NEVKC----VA 112 (312)
T ss_pred cceEEEeecCCCce---------------eEEeeeeccc------------------------------cceeE----EE
Confidence 99999998665431 0000000000 00001 12
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCCC---eeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCc
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 241 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~ 241 (383)
.+.+| .||+ ..+.|+.|=+|.+..+. ++..++.+. ++..+ ..+.|.. ..|+++++|.+
T Consensus 113 ws~sG-~~LA-TCSRDKSVWiWe~deddEfec~aVL~~Ht---------qDVK~----V~WHPt~----dlL~S~SYDnT 173 (312)
T KOG0645|consen 113 WSASG-NYLA-TCSRDKSVWIWEIDEDDEFECIAVLQEHT---------QDVKH----VIWHPTE----DLLFSCSYDNT 173 (312)
T ss_pred EcCCC-CEEE-EeeCCCeEEEEEecCCCcEEEEeeecccc---------ccccE----EEEcCCc----ceeEEeccCCe
Confidence 33444 3555 45678999999986433 334443221 11111 2355542 36889999999
Q ss_pred EEEEeCCCCC--CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC
Q 016769 242 ILVWDIRNPG--IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 319 (383)
Q Consensus 242 i~~wdl~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 319 (383)
||+|+-..+. .+..++.+|..-|.+++|++.+..+++++.|++++||-+-. . ....+...+..+.+. .
T Consensus 174 Ik~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~---~~~~~sr~~Y~v~W~--~ 243 (312)
T KOG0645|consen 174 IKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----D---LSGMHSRALYDVPWD--N 243 (312)
T ss_pred EEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----C---cchhcccceEeeeec--c
Confidence 9999755222 35778999999999999999999999999999999996421 0 111233456777776 4
Q ss_pred cEEEEEeCCCcEEEEEcCCCc--e-----EEEecccccceeEEEEeCC-CCEEEEEeCCCcEEEEeCC
Q 016769 320 KIAATAGWDRRVRIYNYRKGS--A-----LAILKYHHATCNAVSFSSD-CKLMASASEDSTVALWELY 379 (383)
Q Consensus 320 ~~l~s~~~dg~i~iwd~~~~~--~-----~~~~~~h~~~v~~v~~spd-~~~las~s~d~~i~~w~~~ 379 (383)
..|++++.|+.|++|.-...- + .+.-..|...|++|+|.|. ...|++||.||+|++|.+.
T Consensus 244 ~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 244 GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 489999999999999775421 1 1233569999999999995 4599999999999999873
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-27 Score=206.16 Aligned_cols=280 Identities=14% Similarity=0.261 Sum_probs=207.2
Q ss_pred CCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCC
Q 016769 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~ 97 (383)
+..|++++++.+|+.||+|+.||.+|+|+.. +..+..+..|. .++.++-+.. .++++++++.|+|+-+||.-++.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~Hk--gPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHK--GPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccC--CceEEEEEcC--CCCEEEeccCCccEEEEeccCce
Confidence 4689999999999999999999999999975 45555554444 4688888876 47899999999999999987764
Q ss_pred CCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeecc
Q 016769 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAG 177 (383)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 177 (383)
.. +. +.+...+. .+.++.. + .. +++.
T Consensus 310 ~~----q~----------f~~~s~~~------------lDVdW~~-------------------------~-~~--F~ts 335 (524)
T KOG0273|consen 310 VK----QQ----------FEFHSAPA------------LDVDWQS-------------------------N-DE--FATS 335 (524)
T ss_pred EE----Ee----------eeeccCCc------------cceEEec-------------------------C-ce--Eeec
Confidence 21 11 11111110 0111100 0 01 2334
Q ss_pred CCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeee
Q 016769 178 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 257 (383)
Q Consensus 178 ~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~ 257 (383)
+.++.|+++-+....+..++..+ .+.+.+ ..|.|. ...|++++.|++++||.+... .....+
T Consensus 336 ~td~~i~V~kv~~~~P~~t~~GH----------~g~V~a---lk~n~t----g~LLaS~SdD~TlkiWs~~~~-~~~~~l 397 (524)
T KOG0273|consen 336 STDGCIHVCKVGEDRPVKTFIGH----------HGEVNA---LKWNPT----GSLLASCSDDGTLKIWSMGQS-NSVHDL 397 (524)
T ss_pred CCCceEEEEEecCCCcceeeecc----------cCceEE---EEECCC----CceEEEecCCCeeEeeecCCC-cchhhh
Confidence 55788999888777766666532 122222 124332 236889999999999998764 446778
Q ss_pred eccccCeEEEEEeCCCC---------ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC
Q 016769 258 KVHLEPVLCLSIDESCN---------GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 328 (383)
Q Consensus 258 ~~h~~~v~~~~~~~~~~---------~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d 328 (383)
++|...|..+.++|.+. .+++++.|.++++||+......+. +..|+..|.+++|+|+++|+|+|+.|
T Consensus 398 ~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~----f~kH~~pVysvafS~~g~ylAsGs~d 473 (524)
T KOG0273|consen 398 QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT----LMKHQEPVYSVAFSPNGRYLASGSLD 473 (524)
T ss_pred hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe----eccCCCceEEEEecCCCcEEEecCCC
Confidence 89998898888877643 468999999999999986543333 33466789999999999999999999
Q ss_pred CcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 329 RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 329 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
|.|.+|++.+++.++.+++- ..|+.+.|+.+|.+|..+-.|+.+.+-|+.
T Consensus 474 g~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 474 GCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999999888644 459999999999999999999999999874
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=212.23 Aligned_cols=247 Identities=20% Similarity=0.382 Sum_probs=176.2
Q ss_pred eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEE
Q 016769 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~ 90 (383)
...|.||++.|.|+.| +.+.|+|||.|.+|+|||+.+++++..+..|.. .+.-+.|+. ++++|++.|.++++
T Consensus 230 ~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHce--aVLhlrf~n----g~mvtcSkDrsiaV 301 (499)
T KOG0281|consen 230 LKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE--AVLHLRFSN----GYMVTCSKDRSIAV 301 (499)
T ss_pred HHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcc--eeEEEEEeC----CEEEEecCCceeEE
Confidence 4578899999999999 667999999999999999999999988876653 466666664 78999999999999
Q ss_pred eecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCC
Q 016769 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGP 170 (383)
Q Consensus 91 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (383)
||+..+..++ ..+.. .|+. ....+.+ .+.
T Consensus 302 Wdm~sps~it----~rrVL------------------------------vGHr--------------AaVNvVd--fd~- 330 (499)
T KOG0281|consen 302 WDMASPTDIT----LRRVL------------------------------VGHR--------------AAVNVVD--FDD- 330 (499)
T ss_pred EeccCchHHH----HHHHH------------------------------hhhh--------------hheeeec--ccc-
Confidence 9997652110 00000 0000 0000111 122
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCC
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 250 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~ 250 (383)
+| +++++.|++|++|++.+...+..+..+ .++.+.. .+ ....+++|+.|.+|++||+..
T Consensus 331 ky-IVsASgDRTikvW~~st~efvRtl~gH-----------kRGIACl--QY------r~rlvVSGSSDntIRlwdi~~- 389 (499)
T KOG0281|consen 331 KY-IVSASGDRTIKVWSTSTCEFVRTLNGH-----------KRGIACL--QY------RDRLVVSGSSDNTIRLWDIEC- 389 (499)
T ss_pred ce-EEEecCCceEEEEeccceeeehhhhcc-----------cccceeh--hc------cCeEEEecCCCceEEEEeccc-
Confidence 34 456677899999999999887777532 1222211 11 123688999999999999997
Q ss_pred CCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEe-----eeeecCCCCeEEEEECCCCcEEEEE
Q 016769 251 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK-----KEINLERPGISGTSIRPDSKIAATA 325 (383)
Q Consensus 251 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~-----~~~~~~~~~i~~~~~~p~~~~l~s~ 325 (383)
+.+++.+++|.+-|.|+.|+.. .+++|+.||.|++||+.......... .....+.+.+..+.| |...+++.
T Consensus 390 G~cLRvLeGHEeLvRciRFd~k--rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvss 465 (499)
T KOG0281|consen 390 GACLRVLEGHEELVRCIRFDNK--RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISS 465 (499)
T ss_pred cHHHHHHhchHHhhhheeecCc--eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEec
Confidence 4568889999999999999864 57999999999999997543221111 112335567777777 55678999
Q ss_pred eCCCcEEEEEcCCCce
Q 016769 326 GWDRRVRIYNYRKGSA 341 (383)
Q Consensus 326 ~~dg~i~iwd~~~~~~ 341 (383)
+-|.+|-|||...+.+
T Consensus 466 sHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 466 SHDDTILIWDFLNGPP 481 (499)
T ss_pred cCCCeEEEEEcCCCCc
Confidence 9999999999976543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-29 Score=211.01 Aligned_cols=286 Identities=20% Similarity=0.349 Sum_probs=198.2
Q ss_pred CCeeeeeecCCceeeEEEeCCC-CeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~-~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
..++.|.||++.|.|++-+|.. ..+||||.||.|++||+.+..+...+..|.. .+..+++.. +.++++|.|.|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G--~V~Gi~v~~----~~~~tvgdDKt 130 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEG--LVRGICVTQ----TSFFTVGDDKT 130 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccC--ceeeEEecc----cceEEecCCcc
Confidence 3567789999999999999987 7899999999999999998888877665542 344555443 67899999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
|+.|-++.+ +..++. +...+. .+..
T Consensus 131 vK~wk~~~~-----p~~til------g~s~~~--------------------------------------------gIdh 155 (433)
T KOG0268|consen 131 VKQWKIDGP-----PLHTIL------GKSVYL--------------------------------------------GIDH 155 (433)
T ss_pred eeeeeccCC-----cceeee------cccccc--------------------------------------------cccc
Confidence 999998653 111110 000000 0000
Q ss_pred C-CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 168 E-GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 168 ~-~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
. .....+.+|. .|-|||.....++.++.= .++ .+.+ ..|.|..- ..+.+|+.|+.|.|||
T Consensus 156 ~~~~~~FaTcGe---~i~IWD~~R~~Pv~smsw-------G~D---ti~s---vkfNpvET---sILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 156 HRKNSVFATCGE---QIDIWDEQRDNPVSSMSW-------GAD---SISS---VKFNPVET---SILASCASDRSIVLYD 216 (433)
T ss_pred ccccccccccCc---eeeecccccCCccceeec-------CCC---ceeE---EecCCCcc---hheeeeccCCceEEEe
Confidence 0 0011233333 599999988887766642 111 1112 22433321 2366788999999999
Q ss_pred CCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEe
Q 016769 247 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 326 (383)
Q Consensus 247 l~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~ 326 (383)
+++. .|++.... .-.-+.++|+|....+.+++.|..+..+|+........ ....+.+.+.+++|+|.|+-|++||
T Consensus 217 ~R~~-~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~---v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 217 LRQA-SPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLN---VHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred cccC-Cccceeee-eccccceecCccccceeeccccccceehhhhhhcccch---hhcccceeEEEeccCCCcchhcccc
Confidence 9984 44443322 12345789999877889999999999999875432211 1234556788999999999999999
Q ss_pred CCCcEEEEEcCCCceEEEec-ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 327 WDRRVRIYNYRKGSALAILK-YHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.|++||||..+.+.....+- .-...|.+|.||.|.++++|||+|+.|++|...
T Consensus 292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 99999999998776543320 113468999999999999999999999999753
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=222.92 Aligned_cols=237 Identities=20% Similarity=0.313 Sum_probs=178.8
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
...+|.||.++|+.+.|+|+.++|+|+|+|++||+|.+.+..++....+|. ..+..+.|+|. |-+|+|+|.|+|.|
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~--~PVwdV~F~P~--GyYFatas~D~tAr 518 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL--APVWDVQFAPR--GYYFATASHDQTAR 518 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCC--cceeeEEecCC--ceEEEecCCCceee
Confidence 345699999999999999999999999999999999999888887766554 45777889884 67899999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+|..+.....+
T Consensus 519 LWs~d~~~PlR--------------------------------------------------------------------- 529 (707)
T KOG0263|consen 519 LWSTDHNKPLR--------------------------------------------------------------------- 529 (707)
T ss_pred eeecccCCchh---------------------------------------------------------------------
Confidence 99875421000
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
+.+ |.. +.+. | ..|.|+. ..+++|+.|.+||+||+.+
T Consensus 530 ---ifa-ghl-sDV~-------------------------------c---v~FHPNs----~Y~aTGSsD~tVRlWDv~~ 566 (707)
T KOG0263|consen 530 ---IFA-GHL-SDVD-------------------------------C---VSFHPNS----NYVATGSSDRTVRLWDVST 566 (707)
T ss_pred ---hhc-ccc-cccc-------------------------------e---EEECCcc----cccccCCCCceEEEEEcCC
Confidence 000 000 0000 1 1244443 2577899999999999887
Q ss_pred CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCC
Q 016769 250 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 329 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg 329 (383)
+ ..++.+.+|..+|.+++|+|.|.++++|+.|+.|++||+..... ...+..|.+.+.++.|+.+|..||+|+.|.
T Consensus 567 G-~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~----v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn 641 (707)
T KOG0263|consen 567 G-NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSL----VKQLKGHTGTIYSLSFSRDGNVLASGGADN 641 (707)
T ss_pred C-cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcc----hhhhhcccCceeEEEEecCCCEEEecCCCC
Confidence 4 44778899999999999999999999999999999999975432 234455678899999999999999999999
Q ss_pred cEEEEEcCCCc------------------------eEEEecccccceeEEEEeCCCCEEEEE
Q 016769 330 RVRIYNYRKGS------------------------ALAILKYHHATCNAVSFSSDCKLMASA 367 (383)
Q Consensus 330 ~i~iwd~~~~~------------------------~~~~~~~h~~~v~~v~~spd~~~las~ 367 (383)
+|++||+.... .+.++..-..+|..+.|..-+-.|+.|
T Consensus 642 sV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 642 SVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred eEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 99999995421 233333344577788887655445444
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=190.36 Aligned_cols=287 Identities=20% Similarity=0.266 Sum_probs=209.5
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEee
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd 92 (383)
.+++|.+.|.+|+|+.+|..|++|+.|++++||+++..+....+...++...+..+++.+. ....|++++.|.+|++||
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~-~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK-HPDLFATASGDKTIRIWD 93 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC-CCcceEEecCCceEEEEE
Confidence 4679999999999999999999999999999999988766554432223335666777765 357899999999999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
+..+.+. ..+.. + + ..+...++++|. +
T Consensus 94 ~r~~k~~----~~i~~-----------~--------------------~-----------------eni~i~wsp~g~-~ 120 (313)
T KOG1407|consen 94 IRSGKCT----ARIET-----------K--------------------G-----------------ENINITWSPDGE-Y 120 (313)
T ss_pred eccCcEE----EEeec-----------c--------------------C-----------------cceEEEEcCCCC-E
Confidence 9876431 11100 0 0 011223456664 4
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
+++ ++.|..|...|.++.+.....++...+ + ....++.++. ++.....|+|.|-..-+ -.
T Consensus 121 ~~~-~~kdD~it~id~r~~~~~~~~~~~~e~------n----------e~~w~~~nd~--Fflt~GlG~v~ILsyps-Lk 180 (313)
T KOG1407|consen 121 IAV-GNKDDRITFIDARTYKIVNEEQFKFEV------N----------EISWNNSNDL--FFLTNGLGCVEILSYPS-LK 180 (313)
T ss_pred EEE-ecCcccEEEEEecccceeehhccccee------e----------eeeecCCCCE--EEEecCCceEEEEeccc-cc
Confidence 444 455668888898887754443331100 0 0111122222 22334468898887654 45
Q ss_pred ceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEE
Q 016769 253 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 332 (383)
Q Consensus 253 ~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~ 332 (383)
++..++.|.....|+.|+|+++++++|+.|..+.+||++..-+.+. +.....+|..++|+.||++||+||.|..|-
T Consensus 181 pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~----isRldwpVRTlSFS~dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 181 PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERC----ISRLDWPVRTLSFSHDGRMLASASEDHFID 256 (313)
T ss_pred cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhee----eccccCceEEEEeccCcceeeccCccceEE
Confidence 6788999999999999999999999999999999999975433322 334567899999999999999999999999
Q ss_pred EEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCC---------CcEEEEeC
Q 016769 333 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED---------STVALWEL 378 (383)
Q Consensus 333 iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d---------~~i~~w~~ 378 (383)
|=++++|..+..++ +.++.+.|+|+|...+||.+..| |.||+|-+
T Consensus 257 IA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 257 IAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred eEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence 99999999998885 88899999999999999988776 57787765
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-27 Score=220.41 Aligned_cols=285 Identities=21% Similarity=0.357 Sum_probs=212.4
Q ss_pred CCCCCeeeeee-cCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccc-cccccccceeeeeeecCCCCcceeEecc
Q 016769 6 PPPDPVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQG 83 (383)
Q Consensus 6 ~~~~~~~~l~g-H~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (383)
.+......+.+ |...|.+..|+ ...+++++.|+++++|+..++..+.. +.+|. .++.++++.. ++..+++|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~--g~V~~l~~~~--~~~~lvsgS 268 (537)
T KOG0274|consen 195 LFRRGYKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHF--GGVWGLAFPS--GGDKLVSGS 268 (537)
T ss_pred cccccceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCC--CCceeEEEec--CCCEEEEEe
Confidence 33444556666 56788888888 45899999999999999998887766 65664 4677777764 458999999
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
.|.|+|+||+.+|++.. .+..+..-.+ + +
T Consensus 269 ~D~t~rvWd~~sg~C~~----~l~gh~stv~-------------------------------------------~---~- 297 (537)
T KOG0274|consen 269 TDKTERVWDCSTGECTH----SLQGHTSSVR-------------------------------------------C---L- 297 (537)
T ss_pred cCCcEEeEecCCCcEEE----EecCCCceEE-------------------------------------------E---E-
Confidence 99999999999886522 1110000000 0 0
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
.. .+++.++|+.|.+|++|++++++.+..+.. +.+.+.++.. +...+++|+.|++|+
T Consensus 298 ---~~-~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~----------h~~~V~~v~~---------~~~~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 298 ---TI-DPFLLVSGSRDNTVKVWDVTNGACLNLLRG----------HTGPVNCVQL---------DEPLLVSGSYDGTVK 354 (537)
T ss_pred ---Ec-cCceEeeccCCceEEEEeccCcceEEEecc----------ccccEEEEEe---------cCCEEEEEecCceEE
Confidence 00 134567788999999999999998877752 1122333322 123689999999999
Q ss_pred EEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCC-CCeeEEeeeeecCCCCeEEEEECCCCcEE
Q 016769 244 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS-TGSCVIKKEINLERPGISGTSIRPDSKIA 322 (383)
Q Consensus 244 ~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~-~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 322 (383)
+||++. ..+++.+++|..+|.++.++.. ..+++|+.|++|++||++.. .+.. .+..+..-+.. +...++++
T Consensus 355 VW~~~~-~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~----tl~~h~~~v~~--l~~~~~~L 426 (537)
T KOG0274|consen 355 VWDPRT-GKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH----TLQGHTSLVSS--LLLRDNFL 426 (537)
T ss_pred EEEhhh-ceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh----hhcCCcccccc--ccccccee
Confidence 999996 5678999999999999999876 67899999999999999866 3222 22334334433 34467899
Q ss_pred EEEeCCCcEEEEEcCCCceEEEecc-cccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 323 ATAGWDRRVRIYNYRKGSALAILKY-HHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 323 ~s~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
++++.|++|++||..+++.+.++.+ |...|.++++. ...+++++.|+.+++||+..
T Consensus 427 vs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 427 VSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred EeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 9999999999999999999999988 67889888876 45799999999999999853
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=203.45 Aligned_cols=254 Identities=19% Similarity=0.313 Sum_probs=185.7
Q ss_pred eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcc-cccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
...|+||++.|..|+|+..|++|+|+|.|-.+++||..+ .+|+..+.. +.+.+.++.|-|. +..++|++.|.+|+
T Consensus 143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g--h~h~vS~V~f~P~--gd~ilS~srD~tik 218 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG--HEHGVSSVFFLPL--GDHILSCSRDNTIK 218 (406)
T ss_pred hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC--cccceeeEEEEec--CCeeeeccccccee
Confidence 456899999999999999999999999999999999876 345544433 4467888998884 58999999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
.|++.++.+.. .+...+. |. -+.....+|
T Consensus 219 ~We~~tg~cv~----------------t~~~h~e------------wv-----------------------r~v~v~~DG 247 (406)
T KOG0295|consen 219 AWECDTGYCVK----------------TFPGHSE------------WV-----------------------RMVRVNQDG 247 (406)
T ss_pred EEecccceeEE----------------eccCchH------------hE-----------------------EEEEecCCe
Confidence 99999885422 1110000 00 000111222
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEe--ecC------CCCCCceEEEEEeCCCc
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA--YLP------SKSQGFVNVLAGYEDGS 241 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~sg~~dg~ 241 (383)
.++++++.|.++++|-+.++++...+..+..+ +-|.+... +.| .+.++...+.+++.|++
T Consensus 248 --ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~----------vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt 315 (406)
T KOG0295|consen 248 --TIIASCSNDQTLRVWVVATKQCKAELREHEHP----------VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT 315 (406)
T ss_pred --eEEEecCCCceEEEEEeccchhhhhhhccccc----------eEEEEecccccCcchhhccCCCCCccEEEeecccce
Confidence 36778889999999999998543333221111 11111100 000 01123346889999999
Q ss_pred EEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcE
Q 016769 242 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 321 (383)
Q Consensus 242 i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 321 (383)
||+||+.++ .++-++.+|.+.|..++|+|.|++++++..|+++++||++..+ ++. .+..+..-+++++|+.+..|
T Consensus 316 Ik~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~--cmk--~~~ah~hfvt~lDfh~~~p~ 390 (406)
T KOG0295|consen 316 IKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ--CMK--TLEAHEHFVTSLDFHKTAPY 390 (406)
T ss_pred EEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce--eee--ccCCCcceeEEEecCCCCce
Confidence 999999985 4577889999999999999999999999999999999998654 332 33456667999999999999
Q ss_pred EEEEeCCCcEEEEEc
Q 016769 322 AATAGWDRRVRIYNY 336 (383)
Q Consensus 322 l~s~~~dg~i~iwd~ 336 (383)
+++|+-|.++++|..
T Consensus 391 VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 391 VVTGSVDQTVKVWEC 405 (406)
T ss_pred EEeccccceeeeeec
Confidence 999999999999975
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-25 Score=199.51 Aligned_cols=327 Identities=19% Similarity=0.284 Sum_probs=201.6
Q ss_pred Ceeeee---ecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccccccc--------------c---------------
Q 016769 10 PVAVLR---GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--------------W--------------- 57 (383)
Q Consensus 10 ~~~~l~---gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~--------------~--------------- 57 (383)
.+..|. +|++.|++|+++||++.++|.|+|.++||||+.+..++..+ |
T Consensus 224 ~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in 303 (603)
T KOG0318|consen 224 KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN 303 (603)
T ss_pred EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence 455666 99999999999999999999999999999998664432211 0
Q ss_pred ------------cccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeecccccc
Q 016769 58 ------------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN 125 (383)
Q Consensus 58 ------------~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (383)
..++...+.++..++ ++..++||+.||.|.-|+..++..-+. .-..+...........
T Consensus 304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~--d~~~i~SgsyDG~I~~W~~~~g~~~~~---~g~~h~nqI~~~~~~~----- 373 (603)
T KOG0318|consen 304 YLNPSDPSVLKVISGHNKSITALTVSP--DGKTIYSGSYDGHINSWDSGSGTSDRL---AGKGHTNQIKGMAASE----- 373 (603)
T ss_pred EecccCCChhheecccccceeEEEEcC--CCCEEEeeccCceEEEEecCCcccccc---ccccccceEEEEeecC-----
Confidence 001123466677666 458899999999999999988753211 0000000000000000
Q ss_pred ccccCCCCccceeccCcccccCcc---ccccc---cCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEecc
Q 016769 126 AKQANEPKDCYEREVGETVDTDSL---CDSKE---SNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 199 (383)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~ 199 (383)
....+.+-+...+..... +..+. ..+.+....+...++. +++++ .....+-+=|. ..+..++
T Consensus 374 ------~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~-~avv~-~~~~iv~l~~~---~~~~~~~- 441 (603)
T KOG0318|consen 374 ------SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGG-TAVVA-CISDIVLLQDQ---TKVSSIP- 441 (603)
T ss_pred ------CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCC-EEEEE-ecCcEEEEecC---Ccceeec-
Confidence 000111111000000000 00000 0000111111111111 11111 11112221111 1111111
Q ss_pred CcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC-CceeeeeccccCeEEEEEeCCCCceEE
Q 016769 200 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPVLCLSIDESCNGGIS 278 (383)
Q Consensus 200 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~s 278 (383)
.++.....++.|+. ..++.|++|+.|+||.+.... ..-..+..|..++.+++++|++.++++
T Consensus 442 -------------~~y~~s~vAv~~~~----~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~ 504 (603)
T KOG0318|consen 442 -------------IGYESSAVAVSPDG----SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAA 504 (603)
T ss_pred -------------cccccceEEEcCCC----CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEE
Confidence 11212222344443 358889999999999997633 223355679999999999999999999
Q ss_pred EEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCce-EEEecccccceeEEEE
Q 016769 279 GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA-LAILKYHHATCNAVSF 357 (383)
Q Consensus 279 ~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~v~~ 357 (383)
|...+.+.+||...... ....+..|...|++++++|+.+.+|+|+.|-.|.||+++++.. +....+|..-|+.++|
T Consensus 505 ~Da~rkvv~yd~~s~~~---~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~w 581 (603)
T KOG0318|consen 505 GDASRKVVLYDVASREV---KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAW 581 (603)
T ss_pred eccCCcEEEEEcccCce---ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEE
Confidence 99999999999976542 3345666788999999999999999999999999999987644 4444579988999999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCC
Q 016769 358 SSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 358 spd~~~las~s~d~~i~~w~~~ 379 (383)
- |...|+|.++|.+||+|++.
T Consensus 582 l-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 582 L-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred e-cCceEEeccCcceeEEeccc
Confidence 6 66799999999999999984
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=212.25 Aligned_cols=292 Identities=19% Similarity=0.355 Sum_probs=219.1
Q ss_pred eeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEe
Q 016769 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~W 91 (383)
..+.||+..|+++||+.+...|+||+ .+.+++|+..+.+|+..+.. ..+.+..|.| +++++++|...|.+.++
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~----~y~l~~~Fvp--gd~~Iv~G~k~Gel~vf 439 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC----GYILASKFVP--GDRYIVLGTKNGELQVF 439 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc----ccEEEEEecC--CCceEEEeccCCceEEE
Confidence 35789999999999999988888764 55899999999998876532 2466778888 67889999999999999
Q ss_pred ecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCc
Q 016769 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPK 171 (383)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (383)
|+....... +++.+. + .....+..+++..
T Consensus 440 dlaS~~l~E----ti~AHd------------------------------g-----------------aIWsi~~~pD~~g 468 (888)
T KOG0306|consen 440 DLASASLVE----TIRAHD------------------------------G-----------------AIWSISLSPDNKG 468 (888)
T ss_pred Eeehhhhhh----hhhccc------------------------------c-----------------ceeeeeecCCCCc
Confidence 997653211 000000 0 0111223455554
Q ss_pred eeeeccCCcceEEEEecCC-------CCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEE
Q 016769 172 YMAVAGEQLSEVEIWDLNT-------AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~-------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~ 244 (383)
+ +.|+.|.+|++||..- .+.+.++.+.. ...-....+|.. ++|+ ...++.+--|.+|++
T Consensus 469 ~--vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r-----tLel~ddvL~v~---~Spd----gk~LaVsLLdnTVkV 534 (888)
T KOG0306|consen 469 F--VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR-----TLELEDDVLCVS---VSPD----GKLLAVSLLDNTVKV 534 (888)
T ss_pred e--EEecCCcEEEEEeEEEEeccCcccceeeeeccce-----EEeccccEEEEE---EcCC----CcEEEEEeccCeEEE
Confidence 4 4456788999999632 11112222110 001122344543 3443 346778889999999
Q ss_pred EeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEE
Q 016769 245 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 324 (383)
Q Consensus 245 wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s 324 (383)
|-+.+-+. .-.+-+|.=||.||.++++...+++||.|.+|++|-++.+.+.- .+..|+.+|-++.|-|....+.+
T Consensus 535 yflDtlKF-flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK----S~fAHdDSvm~V~F~P~~~~FFt 609 (888)
T KOG0306|consen 535 YFLDTLKF-FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK----SFFAHDDSVMSVQFLPKTHLFFT 609 (888)
T ss_pred EEecceee-eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh----hhhcccCceeEEEEcccceeEEE
Confidence 98887443 34567899999999999999999999999999999998776532 34457788999999999999999
Q ss_pred EeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 325 AGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 325 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+|.|++|+-||-+.-+.+..+.+|...|+|++.+|+|.+++|+|.|..|++|.-.+
T Consensus 610 ~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 610 CGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999999999999999999999999999999998754
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=208.00 Aligned_cols=285 Identities=18% Similarity=0.262 Sum_probs=211.0
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEee
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd 92 (383)
+|..|++.|.+|.|||-.++++++--.|+|.+||-++...+....+.. ..+.+..|.+. -+++++|++|..||+++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~--~PvRa~kfiaR--knWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE--VPVRAAKFIAR--KNWIVTGSDDMQIRVFN 83 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc--cchhhheeeec--cceEEEecCCceEEEEe
Confidence 456699999999999999999999999999999998876665543322 23444444442 37899999999999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
.++++... ..+.++..+. . ....|.. .+
T Consensus 84 ynt~ekV~----~FeAH~DyIR------------------------~-----------------------iavHPt~-P~ 111 (794)
T KOG0276|consen 84 YNTGEKVK----TFEAHSDYIR------------------------S-----------------------IAVHPTL-PY 111 (794)
T ss_pred cccceeeE----Eeecccccee------------------------e-----------------------eeecCCC-Ce
Confidence 98875211 1111100000 0 0011222 23
Q ss_pred eeeccCCcceEEEEecCCCCee-eEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~ 251 (383)
+.++++|-+|++||-+..=.. +.+.. +...+|+.+ |.|.+.+ .+++++-|++|++|.+.++.
T Consensus 112 -vLtsSDDm~iKlW~we~~wa~~qtfeG----------H~HyVMqv~---fnPkD~n---tFaS~sLDrTVKVWslgs~~ 174 (794)
T KOG0276|consen 112 -VLTSSDDMTIKLWDWENEWACEQTFEG----------HEHYVMQVA---FNPKDPN---TFASASLDRTVKVWSLGSPH 174 (794)
T ss_pred -EEecCCccEEEEeeccCceeeeeEEcC----------cceEEEEEE---ecCCCcc---ceeeeeccccEEEEEcCCCC
Confidence 345677899999999876533 33332 122444443 5554333 47899999999999999854
Q ss_pred CceeeeeccccCeEEEEEeC--CCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCC
Q 016769 252 IPLTAMKVHLEPVLCLSIDE--SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 329 (383)
Q Consensus 252 ~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg 329 (383)
+..++++|...|+|+.+-+ +..++++|+.|.+|++||.++.++.. .++.|...|+.+.|+|.-..+++|+.||
T Consensus 175 -~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~----TLeGHt~Nvs~v~fhp~lpiiisgsEDG 249 (794)
T KOG0276|consen 175 -PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ----TLEGHTNNVSFVFFHPELPIIISGSEDG 249 (794)
T ss_pred -CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH----HhhcccccceEEEecCCCcEEEEecCCc
Confidence 5678899999999999944 44589999999999999998765433 3556778899999999999999999999
Q ss_pred cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 016769 330 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVAL 375 (383)
Q Consensus 330 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~ 375 (383)
++|||+..+-+...++...-+.++||+-.+.++.++.|.++|.|.+
T Consensus 250 TvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 250 TVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999998888888878889999999888889999998887644
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-26 Score=189.16 Aligned_cols=285 Identities=20% Similarity=0.287 Sum_probs=200.0
Q ss_pred CCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCC
Q 016769 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~ 97 (383)
.+.|.+|.|+|.+..|+.+|+||++|+|++........+ . ..+.+...+|.+ ....++|+.||+||..|++++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~--~~~plL~c~F~d---~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-K--HGAPLLDCAFAD---ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-e--cCCceeeeeccC---CceEEEeccCceEEEEEecCCc
Confidence 688999999999999999999999999999766333332 2 234678888875 4789999999999999998774
Q ss_pred CCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeecc
Q 016769 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAG 177 (383)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 177 (383)
.. .+.++.... ++.. -....+ .+++|
T Consensus 87 ~~-----~igth~~~i-------------------------------------------~ci~---~~~~~~---~vIsg 112 (323)
T KOG1036|consen 87 ED-----QIGTHDEGI-------------------------------------------RCIE---YSYEVG---CVISG 112 (323)
T ss_pred ce-----eeccCCCce-------------------------------------------EEEE---eeccCC---eEEEc
Confidence 21 111110000 0000 000111 35678
Q ss_pred CCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeee
Q 016769 178 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 257 (383)
Q Consensus 178 ~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~ 257 (383)
+.|++|++||.+.......+. ....++|+.+. ...++.|+.|..|.+||+++-..+...-
T Consensus 113 sWD~~ik~wD~R~~~~~~~~d-----------~~kkVy~~~v~---------g~~LvVg~~~r~v~iyDLRn~~~~~q~r 172 (323)
T KOG1036|consen 113 SWDKTIKFWDPRNKVVVGTFD-----------QGKKVYCMDVS---------GNRLVVGTSDRKVLIYDLRNLDEPFQRR 172 (323)
T ss_pred ccCccEEEEeccccccccccc-----------cCceEEEEecc---------CCEEEEeecCceEEEEEcccccchhhhc
Confidence 889999999998744433332 22356666542 1258889999999999999865543211
Q ss_pred e-ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCC----CCeeEEeeeeecC-----CCCeEEEEECCCCcEEEEEeC
Q 016769 258 K-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS----TGSCVIKKEINLE-----RPGISGTSIRPDSKIAATAGW 327 (383)
Q Consensus 258 ~-~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~----~~~~~~~~~~~~~-----~~~i~~~~~~p~~~~l~s~~~ 327 (383)
. .-.-.++|++.-|.+.+++.++.||+|.+-.++.. ..+..++.+-... ...|++++|+|-.++||+|+.
T Consensus 173 eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs 252 (323)
T KOG1036|consen 173 ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS 252 (323)
T ss_pred cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCC
Confidence 1 11236788888887778899999999999888765 2222222211111 134899999999999999999
Q ss_pred CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeC-----CCc-------EEEEeCCCCC
Q 016769 328 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE-----DST-------VALWELYPPH 382 (383)
Q Consensus 328 dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~-----d~~-------i~~w~~~~~~ 382 (383)
||.|.+||+...+.+..+...+..|.+++|+.||.+||.|+. ..+ |.|.++.+++
T Consensus 253 DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d~e 319 (323)
T KOG1036|consen 253 DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQYERADTPTHERNAIFIRDLTDYE 319 (323)
T ss_pred CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhhhcCCCCCCCCCceEEEeccccc
Confidence 999999999999999888777778999999999999999874 223 6666666543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=212.56 Aligned_cols=290 Identities=17% Similarity=0.301 Sum_probs=215.9
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEee
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd 92 (383)
.|+.-+..|-.++|||..++++++--.|+|++||-.=+.++.....|. +.+-.+.|.|. +-.|+|||+|-+|++|+
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHd--GpVRgv~FH~~--qplFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHD--GPVRGVDFHPT--QPLFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccC--CccceeeecCC--CCeEEecCCccEEEEEe
Confidence 455667889999999999999999999999999976555565544443 46788999984 57899999999999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
..+.+++- ++- .| ..+. + ...+.+.- .+
T Consensus 80 Yk~rrclf----tL~---GH----------lDYV-----------R-----------------------t~~FHhey-PW 107 (1202)
T KOG0292|consen 80 YKTRRCLF----TLL---GH----------LDYV-----------R-----------------------TVFFHHEY-PW 107 (1202)
T ss_pred cccceehh----hhc---cc----------ccee-----------E-----------------------EeeccCCC-ce
Confidence 97654321 110 01 0000 0 00111222 23
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC---
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN--- 249 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~--- 249 (383)
+.++++|.+||||+..+.++++.+..+ ...+||.. |.|.+ ..+++++-|.+||+||+.-
T Consensus 108 -IlSASDDQTIrIWNwqsr~~iavltGH----------nHYVMcAq---FhptE----DlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 108 -ILSASDDQTIRIWNWQSRKCIAVLTGH----------NHYVMCAQ---FHPTE----DLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred -EEEccCCCeEEEEeccCCceEEEEecC----------ceEEEeec---cCCcc----ceEEEecccceEEEEeecchhc
Confidence 445677899999999999999888643 34677754 66643 3689999999999999831
Q ss_pred ----CC---------------------CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee
Q 016769 250 ----PG---------------------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN 304 (383)
Q Consensus 250 ----~~---------------------~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~ 304 (383)
++ ..-..+.+|...|+-++|+|....++||+.|..|++|.++... . .......
T Consensus 170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-a-WEvDtcr 247 (1202)
T KOG0292|consen 170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-A-WEVDTCR 247 (1202)
T ss_pred cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-c-eeehhhh
Confidence 11 0012456899999999999999999999999999999886421 1 1112245
Q ss_pred cCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 305 LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 305 ~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.|.+.|+++-|+|....++|.|.|++||+||+.+.+.+.+++.-.+.-+.++-+|..+++|.| .|+-+.+|.+.
T Consensus 248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkle 321 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLE 321 (1202)
T ss_pred cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEc
Confidence 577889999999999999999999999999999999999998767778999999999887755 55667777764
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=194.36 Aligned_cols=240 Identities=24% Similarity=0.424 Sum_probs=179.5
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..+.++++.| +..+|+||+.|+|++|||++++.+.. ++.. | ..
T Consensus 152 gWVr~vavdP--~n~wf~tgs~DrtikIwDlatg~Lkl----tltG---h---------i~------------------- 194 (460)
T KOG0285|consen 152 GWVRSVAVDP--GNEWFATGSADRTIKIWDLATGQLKL----TLTG---H---------IE------------------- 194 (460)
T ss_pred ceEEEEeeCC--CceeEEecCCCceeEEEEcccCeEEE----eecc---h---------hh-------------------
Confidence 4578899998 46899999999999999999985311 1100 0 00
Q ss_pred ccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEee
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 222 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 222 (383)
..+... ++ .-..|++.+|. |+.|+.|||+..+.+.....+ -..++|+.+
T Consensus 195 ------------~vr~va----vS-~rHpYlFs~ge-dk~VKCwDLe~nkvIR~YhGH----------lS~V~~L~l--- 243 (460)
T KOG0285|consen 195 ------------TVRGVA----VS-KRHPYLFSAGE-DKQVKCWDLEYNKVIRHYHGH----------LSGVYCLDL--- 243 (460)
T ss_pred ------------eeeeee----ec-ccCceEEEecC-CCeeEEEechhhhhHHHhccc----------cceeEEEec---
Confidence 000000 01 11246776654 789999999998865444321 112344432
Q ss_pred cCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee
Q 016769 223 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE 302 (383)
Q Consensus 223 ~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~ 302 (383)
.|. -..+++|+.|.++|+||+|+ +..+..+.+|..+|..+.+.+....+++|+.|.+|++||+........
T Consensus 244 hPT----ldvl~t~grDst~RvWDiRt-r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t---- 314 (460)
T KOG0285|consen 244 HPT----LDVLVTGGRDSTIRVWDIRT-RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT---- 314 (460)
T ss_pred ccc----ceeEEecCCcceEEEeeecc-cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe----
Confidence 222 23688999999999999998 455788999999999999988778899999999999999975432222
Q ss_pred eecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 303 INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 303 ~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
+..+...+.+++++|....||+++.| .|+-|++..+..+..+.+|..-|++++...|| ++++|+++|.+.+||..+.
T Consensus 315 lt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 315 LTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred eecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 23345579999999999999999888 48999999999999999999999999998775 7889999999999998654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-25 Score=182.75 Aligned_cols=249 Identities=20% Similarity=0.332 Sum_probs=180.4
Q ss_pred cccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCcc
Q 016769 56 SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC 135 (383)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (383)
+++|. ..+.++.+++ +.++++|+|.||.+-|||--+.. ....+ .-+-.
T Consensus 51 LkGH~--~Ki~~~~ws~--Dsr~ivSaSqDGklIvWDs~Ttn----K~hai-------------pl~s~----------- 98 (343)
T KOG0286|consen 51 LKGHL--NKIYAMDWST--DSRRIVSASQDGKLIVWDSFTTN----KVHAI-------------PLPSS----------- 98 (343)
T ss_pred ecccc--cceeeeEecC--CcCeEEeeccCCeEEEEEccccc----ceeEE-------------ecCce-----------
Confidence 34454 4578888887 56899999999999999975542 01000 00000
Q ss_pred ceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCe--eeEeccCcCCCCCCcCCCCC
Q 016769 136 YEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGR 213 (383)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~--~~~~~~~~~~~s~~~~~~~~ 213 (383)
| .-..+++|.| .+ ++.|+-|+..-||++.+.+. ...... .-..+.+.
T Consensus 99 W-----------------------VMtCA~sPSg-~~-VAcGGLdN~Csiy~ls~~d~~g~~~v~r------~l~gHtgy 147 (343)
T KOG0286|consen 99 W-----------------------VMTCAYSPSG-NF-VACGGLDNKCSIYPLSTRDAEGNVRVSR------ELAGHTGY 147 (343)
T ss_pred e-----------------------EEEEEECCCC-Ce-EEecCcCceeEEEecccccccccceeee------eecCccce
Confidence 0 0001223444 34 45677789999999976521 111110 01112222
Q ss_pred ceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeC-CCCceEEEEcCCcEEEEEccC
Q 016769 214 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDH 292 (383)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~i~~wdl~~ 292 (383)
.-| ..|..+ .++++++.|.+..+||++++ ..+..+.+|...|.++++.| +++.+++|+.|+..++||++.
T Consensus 148 lSc---C~f~dD-----~~ilT~SGD~TCalWDie~g-~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~ 218 (343)
T KOG0286|consen 148 LSC---CRFLDD-----NHILTGSGDMTCALWDIETG-QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS 218 (343)
T ss_pred eEE---EEEcCC-----CceEecCCCceEEEEEcccc-eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence 222 234432 26999999999999999985 45778999999999999999 888999999999999999986
Q ss_pred CCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEeccc--ccceeEEEEeCCCCEEEEEeCC
Q 016769 293 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH--HATCNAVSFSSDCKLMASASED 370 (383)
Q Consensus 293 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~v~~spd~~~las~s~d 370 (383)
.... .....|...|+++.|.|+|.-|++|+.|+++|+||++..+.+..++.. ...|++++||-.|++|.+|-.|
T Consensus 219 ~~c~----qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 219 GQCV----QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred ccee----EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence 5432 234567889999999999999999999999999999999988888632 2478999999999999999999
Q ss_pred CcEEEEeCCC
Q 016769 371 STVALWELYP 380 (383)
Q Consensus 371 ~~i~~w~~~~ 380 (383)
.++.+||...
T Consensus 295 ~~c~vWDtlk 304 (343)
T KOG0286|consen 295 FTCNVWDTLK 304 (343)
T ss_pred CceeEeeccc
Confidence 9999999753
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-26 Score=205.34 Aligned_cols=240 Identities=20% Similarity=0.318 Sum_probs=188.2
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..+.++.+.|. .-+++++=..|.+.+||.++..+.+ .++....|.
T Consensus 14 dRVKsVd~HPt--ePw~la~LynG~V~IWnyetqtmVk--------------sfeV~~~Pv------------------- 58 (794)
T KOG0276|consen 14 DRVKSVDFHPT--EPWILAALYNGDVQIWNYETQTMVK--------------SFEVSEVPV------------------- 58 (794)
T ss_pred CceeeeecCCC--CceEEEeeecCeeEEEecccceeee--------------eeeecccch-------------------
Confidence 45788999884 4688888889999999998763211 011111010
Q ss_pred ccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEee
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 222 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 222 (383)
+.-.++ .++..+++|++|..||+++..+...+..+.. +++.+-|+++.+.
T Consensus 59 --------------Ra~kfi------aRknWiv~GsDD~~IrVfnynt~ekV~~FeA----------H~DyIR~iavHPt 108 (794)
T KOG0276|consen 59 --------------RAAKFI------ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEA----------HSDYIRSIAVHPT 108 (794)
T ss_pred --------------hhheee------eccceEEEecCCceEEEEecccceeeEEeec----------cccceeeeeecCC
Confidence 000111 1233456788899999999999998888864 3345666666543
Q ss_pred cCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEee
Q 016769 223 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKK 301 (383)
Q Consensus 223 ~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~ 301 (383)
.| .+++++.|-+|++||.++.=.+..++.+|...|.+++|.|... .+++++-|++|++|.+..+....
T Consensus 109 ~P-------~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf---- 177 (794)
T KOG0276|consen 109 LP-------YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF---- 177 (794)
T ss_pred CC-------eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce----
Confidence 33 5899999999999999876556778999999999999988654 68999999999999998665443
Q ss_pred eeecCCCCeEEEEECCC--CcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 302 EINLERPGISGTSIRPD--SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 302 ~~~~~~~~i~~~~~~p~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
.++.|..+|+++.|-+. ..|+++|+.|.+|++||..+..++.++.||...|..+.|+|.-++++|||+||+||||+-
T Consensus 178 Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 178 TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecC
Confidence 34567889999999654 479999999999999999999999999999999999999999999999999999999975
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=209.46 Aligned_cols=188 Identities=22% Similarity=0.312 Sum_probs=139.6
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
++.+++.|.+||||++...++++.+.++. .+-|+ +|.|.+ ..++++|+-|+.||||+|-...
T Consensus 382 fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd-----------fVTcV---aFnPvD---DryFiSGSLD~KvRiWsI~d~~- 443 (712)
T KOG0283|consen 382 FLLSSSMDKTVRLWHPGRKECLKVFSHND-----------FVTCV---AFNPVD---DRYFISGSLDGKVRLWSISDKK- 443 (712)
T ss_pred eeEeccccccEEeecCCCcceeeEEecCC-----------eeEEE---EecccC---CCcEeecccccceEEeecCcCe-
Confidence 44556789999999999999998886542 22232 366653 2368999999999999987533
Q ss_pred ceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeee------ecCCCCeEEEEECCCCc-EEEEE
Q 016769 253 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI------NLERPGISGTSIRPDSK-IAATA 325 (383)
Q Consensus 253 ~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~------~~~~~~i~~~~~~p~~~-~l~s~ 325 (383)
.......+ +.|+.++|.|+|++.+.|+.+|.+++|+...-. ......+ +.....|+++.|.|... .|+.+
T Consensus 444 Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk--~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT 520 (712)
T KOG0283|consen 444 VVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK--LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT 520 (712)
T ss_pred eEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCe--EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe
Confidence 22222222 689999999999999999999999999875421 1111111 11123699999987654 46678
Q ss_pred eCCCcEEEEEcCCCceEEEecccccce--eEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 326 GWDRRVRIYNYRKGSALAILKYHHATC--NAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 326 ~~dg~i~iwd~~~~~~~~~~~~h~~~v--~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
+.|.+|||||+++.+.+..++|+.+.- ....|++||+++++|++|..|++|++..+
T Consensus 521 SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 521 SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 999999999998888887787765432 45689999999999999999999998543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=180.85 Aligned_cols=285 Identities=18% Similarity=0.332 Sum_probs=196.6
Q ss_pred eeEEEeCC--CCe-EEEec-----CCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeec
Q 016769 22 TDVCFHQT--KPI-LFAGT-----TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (383)
Q Consensus 22 ~~v~f~~~--~~~-L~sgs-----~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~ 93 (383)
+++.|||- +++ +|++. ..|++.|-++...+.+..........++.-++++++ ..+++++++.||++|+||.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~-~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSEN-HENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCC-CcceEEEEecCceEEEecc
Confidence 56789983 332 23322 346788888764444443332223345677888875 4578999999999999995
Q ss_pred CCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCcee
Q 016769 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYM 173 (383)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (383)
..+. .|....+.+. ..++.+.++. .. +..
T Consensus 91 ~~~s---~Pi~~~kEH~----------------------~EV~Svdwn~-------------------------~~-r~~ 119 (311)
T KOG0277|consen 91 TMPS---KPIHKFKEHK----------------------REVYSVDWNT-------------------------VR-RRI 119 (311)
T ss_pred CCCC---cchhHHHhhh----------------------hheEEecccc-------------------------cc-cee
Confidence 3221 1211111100 0111111111 11 223
Q ss_pred eeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCc
Q 016769 174 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 253 (383)
Q Consensus 174 ~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~ 253 (383)
.++++.|++||+||...++.++++..+ -.|+....+.|... ..+++++.|+++++||++.++..
T Consensus 120 ~ltsSWD~TiKLW~~~r~~Sv~Tf~gh-------------~~~Iy~a~~sp~~~---nlfas~Sgd~~l~lwdvr~~gk~ 183 (311)
T KOG0277|consen 120 FLTSSWDGTIKLWDPNRPNSVQTFNGH-------------NSCIYQAAFSPHIP---NLFASASGDGTLRLWDVRSPGKF 183 (311)
T ss_pred EEeeccCCceEeecCCCCcceEeecCC-------------ccEEEEEecCCCCC---CeEEEccCCceEEEEEecCCCce
Confidence 445588999999999988888876532 12333334555432 25778999999999999998776
Q ss_pred eeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC-cEEEEEeCCCcE
Q 016769 254 LTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KIAATAGWDRRV 331 (383)
Q Consensus 254 ~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~l~s~~~dg~i 331 (383)
+. +..|...+.++.|+.... .+++|+.|+.|+.||++..... ..++..+...|..+.|+|-. ..||+++.|-++
T Consensus 184 ~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p---l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ 259 (311)
T KOG0277|consen 184 MS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP---LFELNGHGLAVRKVKFSPHHASLLASASYDMTV 259 (311)
T ss_pred eE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc---ceeecCCceEEEEEecCcchhhHhhhccccceE
Confidence 55 888998899999976544 5789999999999999865422 13456677789999999975 579999999999
Q ss_pred EEEEcCCCc-eEEEecccccceeEEEEeCC-CCEEEEEeCCCcEEEEeC
Q 016769 332 RIYNYRKGS-ALAILKYHHATCNAVSFSSD-CKLMASASEDSTVALWEL 378 (383)
Q Consensus 332 ~iwd~~~~~-~~~~~~~h~~~v~~v~~spd-~~~las~s~d~~i~~w~~ 378 (383)
||||...+. .+.+...|.+-+..+.||+- ..++|+.+.|..++||+-
T Consensus 260 riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 260 RIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999998654 45677789999999999984 459999999999999984
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-25 Score=184.39 Aligned_cols=303 Identities=21% Similarity=0.312 Sum_probs=191.1
Q ss_pred eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcc-----cccccccccccccceeeeeeecCCCCcceeEecccC
Q 016769 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
+.+|+||.+.|++|+|+.||++|+|++.|++||||++.. .+++.. .++. .+ -..+.|.|+- ...+++.-.-
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~-dh-pT~V~FapDc-~s~vv~~~~g 154 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEY-DH-PTRVVFAPDC-KSVVVSVKRG 154 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccC-CC-ceEEEECCCc-ceEEEEEccC
Confidence 357999999999999999999999999999999999753 233321 1111 11 2466777741 2345566677
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
.+++++-+...+-...+. ...+....++.... ...+...
T Consensus 155 ~~l~vyk~~K~~dG~~~~-----~~v~~D~~~f~~kh------------------------------------~v~~i~i 193 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSH-----HFVHIDNLEFERKH------------------------------------QVDIINI 193 (420)
T ss_pred CEEEEEEeeecccCCCCc-----ccccccccccchhc------------------------------------ccceEEE
Confidence 788888764322111000 00000000000000 0000111
Q ss_pred C-CCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEE
Q 016769 166 P-AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244 (383)
Q Consensus 166 ~-~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~ 244 (383)
. .++.+|++ +.+.|.+|-||++. ++.+..+.-+.. . ..++ ..+|+ + .++++++-.-.|++
T Consensus 194 GiA~~~k~im-sas~dt~i~lw~lk-Gq~L~~idtnq~-------~--n~~a----avSP~---G-RFia~~gFTpDVkV 254 (420)
T KOG2096|consen 194 GIAGNAKYIM-SASLDTKICLWDLK-GQLLQSIDTNQS-------S--NYDA----AVSPD---G-RFIAVSGFTPDVKV 254 (420)
T ss_pred eecCCceEEE-EecCCCcEEEEecC-Cceeeeeccccc-------c--ccce----eeCCC---C-cEEEEecCCCCceE
Confidence 1 23335554 44567799999998 776665542110 0 0111 23333 2 24667777788999
Q ss_pred EeCCC--CC-----CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCC----CeeEEeee---eecCCCCe
Q 016769 245 WDIRN--PG-----IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST----GSCVIKKE---INLERPGI 310 (383)
Q Consensus 245 wdl~~--~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~----~~~~~~~~---~~~~~~~i 310 (383)
|.+-- .+ ...-.+++|...|..++|+++....++.+.||.+++||.+-.- .+-+++.. +....+..
T Consensus 255 wE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p 334 (420)
T KOG2096|consen 255 WEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEP 334 (420)
T ss_pred EEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCc
Confidence 98621 11 1133578999999999999999999999999999999986321 11111110 11112334
Q ss_pred EEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEec-ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 311 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK-YHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 311 ~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
..++++|+|+.||. +....+++|..++++.+.++. .|...|.+++|+|||+++||++ |..+++.--.
T Consensus 335 ~RL~lsP~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~nt 402 (420)
T KOG2096|consen 335 VRLELSPSGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNT 402 (420)
T ss_pred eEEEeCCCCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCC
Confidence 57889999998875 456789999999999887764 5999999999999999999987 5677777543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-25 Score=185.37 Aligned_cols=332 Identities=17% Similarity=0.242 Sum_probs=217.8
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
.+..|.||++.|+.++.....+.+.|+|+|.+.++|.+++++|+....+|. +.+-++.|.++ +..+++++.|++..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~--GSVNsikfh~s--~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHT--GSVNSIKFHNS--GLLLLTASGDETAH 215 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccc--cceeeEEeccc--cceEEEccCCcchH
Confidence 344578999999999998888899999999999999999999998887765 46778899884 56778999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEe--eccccccccccCCCCccceeccCcccccCccccccccCCccceecccC-
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSL--VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP- 166 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 166 (383)
||...-.-. .|...... .|.-.-+. ...... ....+ ....++.+.. .+.... ++..++..+.
T Consensus 216 IW~~av~~~--vP~~~a~~--~hSsEeE~e~sDe~~~--d~d~~-----~~sD~~tiRv-Pl~~lt---gH~~vV~a~dW 280 (481)
T KOG0300|consen 216 IWKAAVNWE--VPSNNAPS--DHSSEEEEEHSDEHNR--DTDSS-----EKSDGHTIRV-PLMRLT---GHRAVVSACDW 280 (481)
T ss_pred HHHHhhcCc--CCCCCCCC--CCCchhhhhccccccc--ccccc-----cccCCceeee-eeeeee---ccccceEehhh
Confidence 998321100 00000000 00000000 000000 00000 0000000000 000000 1111222211
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
..|.+. ++.++.|++..+||++++..+..+..+... +. .|.. +.....+++.+.|.+.++||
T Consensus 281 L~gg~Q-~vTaSWDRTAnlwDVEtge~v~~LtGHd~E--Lt-------Hcst--------HptQrLVvTsSrDtTFRLWD 342 (481)
T KOG0300|consen 281 LAGGQQ-MVTASWDRTANLWDVETGEVVNILTGHDSE--LT-------HCST--------HPTQRLVVTSSRDTTFRLWD 342 (481)
T ss_pred hcCcce-eeeeeccccceeeeeccCceeccccCcchh--cc-------cccc--------CCcceEEEEeccCceeEecc
Confidence 122333 345678999999999999987776542210 11 1111 12234678899999999999
Q ss_pred CCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEe
Q 016769 247 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 326 (383)
Q Consensus 247 l~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~ 326 (383)
++........+++|++.|.+..|..+. .+++|+.|.+|++|||....... . .+. ..+.++.++++..++.||.--
T Consensus 343 FReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRspl-A--TIR-tdS~~NRvavs~g~~iIAiPh 417 (481)
T KOG0300|consen 343 FREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPL-A--TIR-TDSPANRVAVSKGHPIIAIPH 417 (481)
T ss_pred chhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcc-e--eee-cCCccceeEeecCCceEEecc
Confidence 996555578899999999999997664 46899999999999998654321 1 122 235788999999999999999
Q ss_pred CCCcEEEEEcCCCceE----EEecccccceeEEEEeCCCC--EEEEEeCCCcEEEEeCCCCCC
Q 016769 327 WDRRVRIYNYRKGSAL----AILKYHHATCNAVSFSSDCK--LMASASEDSTVALWELYPPHA 383 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~~----~~~~~h~~~v~~v~~spd~~--~las~s~d~~i~~w~~~~~~~ 383 (383)
.++.|++||+.-.+.. ..-++|...|.|.+|.-+-. -|++++.|..+.=|++..|+.
T Consensus 418 DNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~~ 480 (481)
T KOG0300|consen 418 DNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPTS 480 (481)
T ss_pred CCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccCC
Confidence 9999999999643321 23468999999999975433 588999999999999988763
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=200.16 Aligned_cols=283 Identities=19% Similarity=0.323 Sum_probs=195.8
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeee-eeecCCCCcceeEecccCCe
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS-VATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~s~~~D~t 87 (383)
+..+.++||...|..+++.+.. .++++|.||++++|+-...+-+.......+...+.. +++.+. +..++++|+.|.+
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~-~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES-DKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccc-cCcceEeecccce
Confidence 4567899999999999987554 899999999999999755443322111112222322 444432 4467899999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
+.+|...+.+ |..++..+....|.++.
T Consensus 83 i~v~~~~~~~----P~~~LkgH~snVC~ls~------------------------------------------------- 109 (745)
T KOG0301|consen 83 IIVFKLSQAE----PLYTLKGHKSNVCSLSI------------------------------------------------- 109 (745)
T ss_pred EEEEecCCCC----chhhhhccccceeeeec-------------------------------------------------
Confidence 9999987653 23333333332332221
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
+..-.+++|+.|.++++|.+.... ..++.+ ...+ -++ ...|++ .+++|+.|++||+|.=
T Consensus 110 -~~~~~~iSgSWD~TakvW~~~~l~--~~l~gH----------~asV--WAv-~~l~e~-----~~vTgsaDKtIklWk~ 168 (745)
T KOG0301|consen 110 -GEDGTLISGSWDSTAKVWRIGELV--YSLQGH----------TASV--WAV-ASLPEN-----TYVTGSADKTIKLWKG 168 (745)
T ss_pred -CCcCceEecccccceEEecchhhh--cccCCc----------chhe--eee-eecCCC-----cEEeccCcceeeeccC
Confidence 111135688999999999764422 222211 0001 111 233332 4889999999999973
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 327 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~ 327 (383)
+..+.++++|++.|+.+++-++. .++||+.||.|++|+++. .+++ ++..|.+-+.+++...+++.+++++.
T Consensus 169 ---~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g---e~l~--~~~ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 169 ---GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG---EVLL--EMHGHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred ---CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC---ceee--eeeccceEEEEEEecCCCCeEEEecC
Confidence 44578899999999999996653 579999999999999842 2333 45667778999997788889999999
Q ss_pred CCcEEEEEcCCCceEEEeccccc-ceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 328 DRRVRIYNYRKGSALAILKYHHA-TCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 328 dg~i~iwd~~~~~~~~~~~~h~~-~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
|++++||+.. .+...+. |+. .|+++.+-++|. +++|+.||.|+||...+
T Consensus 240 DrtlriW~~~--e~~q~I~-lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 240 DRTLRIWKKD--ECVQVIT-LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CceEEEeecC--ceEEEEe-cCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 9999999997 5555554 444 799999887775 57789999999998763
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-23 Score=176.57 Aligned_cols=290 Identities=17% Similarity=0.225 Sum_probs=195.3
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecc--cCC
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG--RDG 86 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~D~ 86 (383)
+|.++|+.-.+.|++|.|+++|..|+++++|.+++|||..+++.+..+..+ ..++-.+.|.. ..+.++.++ .|.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk--kyG~~~~~Fth--~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK--KYGVDLACFTH--HSNTVIHSSTKEDD 80 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc--cccccEEEEec--CCceEEEccCCCCC
Confidence 456677777899999999999999999999999999999998877765433 23455555543 235566555 489
Q ss_pred eEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 87 ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
+||.-++.+.++++ - ..++.. . +. .....
T Consensus 81 tIryLsl~dNkylR-------Y----------F~GH~~----------~-----------------------V~-sL~~s 109 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLR-------Y----------FPGHKK----------R-----------------------VN-SLSVS 109 (311)
T ss_pred ceEEEEeecCceEE-------E----------cCCCCc----------e-----------------------EE-EEEec
Confidence 99999987764321 0 000000 0 00 01111
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
|.+. ...+++.|++||+||++..++.-.+.-.. +.. .+|-|++ ..++++.....|++||
T Consensus 110 P~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-----------~pi----~AfDp~G----LifA~~~~~~~IkLyD 168 (311)
T KOG1446|consen 110 PKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSG-----------RPI----AAFDPEG----LIFALANGSELIKLYD 168 (311)
T ss_pred CCCC--eEEecccCCeEEeeEecCCCCceEEecCC-----------Ccc----eeECCCC----cEEEEecCCCeEEEEE
Confidence 2222 34567788999999999877654443211 111 1233321 1234455555999999
Q ss_pred CCCC-CCceeeeecc---ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCC-eEEEEECCCCcE
Q 016769 247 IRNP-GIPLTAMKVH---LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG-ISGTSIRPDSKI 321 (383)
Q Consensus 247 l~~~-~~~~~~~~~h---~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~-i~~~~~~p~~~~ 321 (383)
+|+- +.|...+... ......+.|+++|+.++.+...+.+.+.|.=.++ ............. --...|+||+++
T Consensus 169 ~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~--~~~tfs~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 169 LRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT--VKSTFSGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred ecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc--EeeeEeeccCCCCcceeEEECCCCcE
Confidence 9874 3355544432 3456789999999999988888888888754333 3322222222221 246789999999
Q ss_pred EEEEeCCCcEEEEEcCCCceEEEecc-cccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 322 AATAGWDRRVRIYNYRKGSALAILKY-HHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 322 l~s~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
+++|+.||+|.+|++++++.+..+++ +..++.++.|+|.--++||+ +..+-+|=.
T Consensus 247 vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p 302 (311)
T KOG1446|consen 247 VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLP 302 (311)
T ss_pred EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEec
Confidence 99999999999999999999999988 78999999999975566655 466888844
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=185.98 Aligned_cols=287 Identities=16% Similarity=0.241 Sum_probs=205.8
Q ss_pred ecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccc------cccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH------SAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
|.+.-+-|..|+|||++|+|||.||-|.|||..+++.-..++-- .....+.|+.|+- +.+.+++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR--DsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR--DSEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc--cHHHhhccCcCCcEE
Confidence 55677888999999999999999999999999887643322100 1123477888876 568899999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+|.+++|.|++.-. +.+.-..+. ..++.++
T Consensus 289 vWri~tG~ClRrFd---rAHtkGvt~-----------------------------------------------l~FSrD~ 318 (508)
T KOG0275|consen 289 VWRIETGQCLRRFD---RAHTKGVTC-----------------------------------------------LSFSRDN 318 (508)
T ss_pred EEEEecchHHHHhh---hhhccCeeE-----------------------------------------------EEEccCc
Confidence 99999997654210 000000000 1122333
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
.++ .+++.|.++|+.-+.+++++..+..+.. +-+. ..|.++. .++++++.||+|++|+.++
T Consensus 319 Sqi--LS~sfD~tvRiHGlKSGK~LKEfrGHsS-----yvn~--------a~ft~dG----~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 319 SQI--LSASFDQTVRIHGLKSGKCLKEFRGHSS-----YVNE--------ATFTDDG----HHIISASSDGTVKVWHGKT 379 (508)
T ss_pred chh--hcccccceEEEeccccchhHHHhcCccc-----cccc--------eEEcCCC----CeEEEecCCccEEEecCcc
Confidence 332 3456788999999999998877664321 1000 0133222 3689999999999999887
Q ss_pred CCCceeeeec--cccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEee-eeecCCCCeEEEEECCCCcEEEEE
Q 016769 250 PGIPLTAMKV--HLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKK-EINLERPGISGTSIRPDSKIAATA 325 (383)
Q Consensus 250 ~~~~~~~~~~--h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~s~ 325 (383)
..++.+++. ...+|+.+-.-|... .++.|...+++.+-++... ..... .-+.+.+..-+..++|-|..+.+.
T Consensus 380 -teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYci 455 (508)
T KOG0275|consen 380 -TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCI 455 (508)
T ss_pred -hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEE
Confidence 344555543 234677776655443 5788999999999887532 11111 123345567788899999999999
Q ss_pred eCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 326 GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 326 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
+.|+.++-|...+|+...++.-|++.+..++-+|-.+.||+-++||.+++|.
T Consensus 456 gED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 456 GEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999995
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=204.69 Aligned_cols=247 Identities=17% Similarity=0.325 Sum_probs=186.2
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..+..++|.|+ .-+++++=-.|+|++||..=+.++.. +.
T Consensus 10 sRvKglsFHP~--rPwILtslHsG~IQlWDYRM~tli~r--------------Fd------------------------- 48 (1202)
T KOG0292|consen 10 SRVKGLSFHPK--RPWILTSLHSGVIQLWDYRMGTLIDR--------------FD------------------------- 48 (1202)
T ss_pred ccccceecCCC--CCEEEEeecCceeeeehhhhhhHHhh--------------hh-------------------------
Confidence 45778899985 46788888889999999864422110 00
Q ss_pred ccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEee
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 222 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 222 (383)
.+.++++. ..+.+.+ .++++|++|-+|++|+..+.+++.++..+. +.+-. + .|
T Consensus 49 --------eHdGpVRg----v~FH~~q--plFVSGGDDykIkVWnYk~rrclftL~GHl----------DYVRt--~-~F 101 (1202)
T KOG0292|consen 49 --------EHDGPVRG----VDFHPTQ--PLFVSGGDDYKIKVWNYKTRRCLFTLLGHL----------DYVRT--V-FF 101 (1202)
T ss_pred --------ccCCccce----eeecCCC--CeEEecCCccEEEEEecccceehhhhcccc----------ceeEE--e-ec
Confidence 00000010 1123333 377889999999999999988887765421 11111 1 13
Q ss_pred cCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCC------C-
Q 016769 223 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST------G- 295 (383)
Q Consensus 223 ~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~------~- 295 (383)
.+. ..++++++.|.+|+||+..+ +.++..+++|...|.|..|+|+.+.++|+|-|++|++||+..-. +
T Consensus 102 Hhe----yPWIlSASDDQTIrIWNwqs-r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~ 176 (1202)
T KOG0292|consen 102 HHE----YPWILSASDDQTIRIWNWQS-RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGS 176 (1202)
T ss_pred cCC----CceEEEccCCCeEEEEeccC-CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCC
Confidence 322 23699999999999999987 56789999999999999999998999999999999999984210 0
Q ss_pred ------------------eeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCce--EEEecccccceeEE
Q 016769 296 ------------------SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA--LAILKYHHATCNAV 355 (383)
Q Consensus 296 ------------------~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~v 355 (383)
....+..++.|.-+|++++|+|.-..|+||+.|+.|++|.+...+. +-+.++|.+.|.++
T Consensus 177 ~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssv 256 (1202)
T KOG0292|consen 177 LEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSV 256 (1202)
T ss_pred chhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceE
Confidence 1233345677888999999999999999999999999999965553 45788999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEeCCCCC
Q 016769 356 SFSSDCKLMASASEDSTVALWELYPPH 382 (383)
Q Consensus 356 ~~spd~~~las~s~d~~i~~w~~~~~~ 382 (383)
-|+|...++.|.|+|+.|++||+...+
T Consensus 257 lfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 257 LFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred EecCccceeEecCCCccEEEEeccccc
Confidence 999998999999999999999997654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=204.34 Aligned_cols=253 Identities=24% Similarity=0.364 Sum_probs=182.8
Q ss_pred eee-eeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 11 VAV-LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 11 ~~~-l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
+.+ |.||++.|++++|..-+.+|++||.|.++||||..++.|...+..|.. .+.++...+ ..+++|+.|.+|+
T Consensus 241 i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s--tv~~~~~~~----~~~~sgs~D~tVk 314 (537)
T KOG0274|consen 241 ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTS--SVRCLTIDP----FLLVSGSRDNTVK 314 (537)
T ss_pred EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCc--eEEEEEccC----ceEeeccCCceEE
Confidence 345 899999999999987788999999999999999999999988876652 355555543 5778899999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+|+++++.+.. .+ ..+.. + +....-++
T Consensus 315 VW~v~n~~~l~----l~-------------~~h~~-------~-----------------------------V~~v~~~~ 341 (537)
T KOG0274|consen 315 VWDVTNGACLN----LL-------------RGHTG-------P-----------------------------VNCVQLDE 341 (537)
T ss_pred EEeccCcceEE----Ee-------------ccccc-------c-----------------------------EEEEEecC
Confidence 99999775321 00 00000 0 00000111
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
-++++|+.|++|++||..+++++..+..+ .+++.+..+ .. ...+++|+.|++|++||+++
T Consensus 342 --~~lvsgs~d~~v~VW~~~~~~cl~sl~gH----------~~~V~sl~~-----~~---~~~~~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 342 --PLLVSGSYDGTVKVWDPRTGKCLKSLSGH----------TGRVYSLIV-----DS---ENRLLSGSLDTTIKVWDLRT 401 (537)
T ss_pred --CEEEEEecCceEEEEEhhhceeeeeecCC----------cceEEEEEe-----cC---cceEEeeeeccceEeecCCc
Confidence 25677888999999999999998888642 233333222 11 13689999999999999998
Q ss_pred CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCC
Q 016769 250 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 329 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg 329 (383)
...++.++++|.+-+..+.+. .+.+++++.|+.|++||.+..+....+... +...+..+.+. ...+++++.|+
T Consensus 402 ~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~---~~~~v~~l~~~--~~~il~s~~~~ 474 (537)
T KOG0274|consen 402 KRKCIHTLQGHTSLVSSLLLR--DNFLVSSSADGTIKLWDAEEGECLRTLEGR---HVGGVSALALG--KEEILCSSDDG 474 (537)
T ss_pred hhhhhhhhcCCcccccccccc--cceeEeccccccEEEeecccCceeeeeccC---CcccEEEeecC--cceEEEEecCC
Confidence 535678899998888665553 356899999999999999876654433211 44567777776 45788899999
Q ss_pred cEEEEEcCCCceEEEecccc
Q 016769 330 RVRIYNYRKGSALAILKYHH 349 (383)
Q Consensus 330 ~i~iwd~~~~~~~~~~~~h~ 349 (383)
++++||+++++.+..+-.+.
T Consensus 475 ~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 475 SVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred eeEEEecccCchhhhhhhcc
Confidence 99999999998876553333
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-25 Score=192.21 Aligned_cols=247 Identities=23% Similarity=0.343 Sum_probs=178.7
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEee
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd 92 (383)
.+.+|..+|+++.++.++.+++||..||.||+|+..-.. +.....| ....|..++|+| ++++|+|++.|++|+|||
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ah-h~eaIRdlafSp--nDskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAH-HAEAIRDLAFSP--NDSKFLTCSDDGTIKIWD 208 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHh-hhhhhheeccCC--CCceeEEecCCCeEEEEe
Confidence 356999999999999999999999999999999975332 2222222 224688999999 468999999999999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
...+.. ...++.+.+- +. ..+..+. +-
T Consensus 209 f~~~ke----e~vL~GHgwd----------------------Vk-------------------------svdWHP~--kg 235 (464)
T KOG0284|consen 209 FRMPKE----ERVLRGHGWD----------------------VK-------------------------SVDWHPT--KG 235 (464)
T ss_pred ccCCch----hheeccCCCC----------------------cc-------------------------eeccCCc--cc
Confidence 865421 1111110000 00 0011111 23
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
++++|+.|+.|++||.+++.+++++..+ +..+ +++ .|.++. ..|++++.|..++++|+++-.
T Consensus 236 LiasgskDnlVKlWDprSg~cl~tlh~H----------KntV--l~~-~f~~n~----N~Llt~skD~~~kv~DiR~mk- 297 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSCLATLHGH----------KNTV--LAV-KFNPNG----NWLLTGSKDQSCKVFDIRTMK- 297 (464)
T ss_pred eeEEccCCceeEeecCCCcchhhhhhhc----------cceE--EEE-EEcCCC----CeeEEccCCceEEEEehhHhH-
Confidence 6677888899999999999999888642 1222 222 355443 479999999999999999533
Q ss_pred ceeeeeccccCeEEEEEeCCCCc-eEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcE
Q 016769 253 PLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 331 (383)
Q Consensus 253 ~~~~~~~h~~~v~~~~~~~~~~~-~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i 331 (383)
.+..+++|...|.++.++|-... +.+|+.|+.|..|.+..... +......+...|.+++++|-|..|++|+.|+++
T Consensus 298 El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p---~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~ 374 (464)
T KOG0284|consen 298 ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP---LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTV 374 (464)
T ss_pred HHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccc---ccCCCcccccceeeeeccccceeEeecCCCcce
Confidence 35667899999999999887665 56789999999998762211 111234567789999999999999999999999
Q ss_pred EEEEcC
Q 016769 332 RIYNYR 337 (383)
Q Consensus 332 ~iwd~~ 337 (383)
++|.-.
T Consensus 375 rfw~r~ 380 (464)
T KOG0284|consen 375 RFWTRN 380 (464)
T ss_pred eeeccC
Confidence 999764
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-23 Score=208.63 Aligned_cols=272 Identities=15% Similarity=0.206 Sum_probs=182.3
Q ss_pred CCeEEEeeCcccccccccc---cccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeee
Q 016769 39 GGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (383)
Q Consensus 39 D~~v~vW~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~ 115 (383)
+|.+++|+....+....+. .......+.+++|++ ++.++++||.|++|++||++....... ..+...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~--dg~~latgg~D~~I~iwd~~~~~~~~~--------~~~~~~ 526 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDR--DGEFFATAGVNKKIKIFECESIIKDGR--------DIHYPV 526 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEECCccccccc--------ccccce
Confidence 6778888876543322111 111234578889998 468899999999999999854210000 000000
Q ss_pred EEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeee
Q 016769 116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT 195 (383)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~ 195 (383)
..+.. .... . ...+.+....+ +++++.|++|++||+.+++.+.
T Consensus 527 ~~~~~-----------~~~v------------------------~-~l~~~~~~~~~-las~~~Dg~v~lWd~~~~~~~~ 569 (793)
T PLN00181 527 VELAS-----------RSKL------------------------S-GICWNSYIKSQ-VASSNFEGVVQVWDVARSQLVT 569 (793)
T ss_pred EEecc-----------cCce------------------------e-eEEeccCCCCE-EEEEeCCCeEEEEECCCCeEEE
Confidence 00000 0000 0 00111222233 4556678999999999887766
Q ss_pred EeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEe-CCCC
Q 016769 196 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID-ESCN 274 (383)
Q Consensus 196 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~-~~~~ 274 (383)
.+..+ .+.+.++. |.+.+ ...+++|+.|++|++||+++. ..+..+..+ ..+.++.|. +++.
T Consensus 570 ~~~~H----------~~~V~~l~---~~p~~---~~~L~Sgs~Dg~v~iWd~~~~-~~~~~~~~~-~~v~~v~~~~~~g~ 631 (793)
T PLN00181 570 EMKEH----------EKRVWSID---YSSAD---PTLLASGSDDGSVKLWSINQG-VSIGTIKTK-ANICCVQFPSESGR 631 (793)
T ss_pred EecCC----------CCCEEEEE---EcCCC---CCEEEEEcCCCEEEEEECCCC-cEEEEEecC-CCeEEEEEeCCCCC
Confidence 65432 12222322 33321 225889999999999999874 345555544 578889884 5677
Q ss_pred ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCC------ceEEEeccc
Q 016769 275 GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG------SALAILKYH 348 (383)
Q Consensus 275 ~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~h 348 (383)
.+++|+.|+.|++||+....... .....+...|.++.|. ++.++++++.|++|++||+..+ +.+..+.+|
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~---~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh 707 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPL---CTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH 707 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccc---eEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC
Confidence 89999999999999997543111 1234566789999997 6789999999999999999743 567788999
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 349 HATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 349 ~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
...+.+++|+|++++||+|+.|+.|++|+..
T Consensus 708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 9999999999999999999999999999964
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=198.09 Aligned_cols=245 Identities=21% Similarity=0.363 Sum_probs=180.3
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..+.++.|++ +++.+++++.|+++++|+.++... +....+ ..|.
T Consensus 160 ~sv~~~~fs~--~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l---~~h~----------------------------- 203 (456)
T KOG0266|consen 160 PSVTCVDFSP--DGRALAAASSDGLIRIWKLEGIKS--NLLREL---SGHT----------------------------- 203 (456)
T ss_pred CceEEEEEcC--CCCeEEEccCCCcEEEeecccccc--hhhccc---cccc-----------------------------
Confidence 4577788888 467899999999999999865431 000000 0000
Q ss_pred ccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCC-CeeeEeccCcCCCCCCcCCCCCceeeEEEe
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 221 (383)
....-..+++++. ++++++.|.++|+||++.. ..+..+..+ ...+++. .
T Consensus 204 ---------------~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~~~~~~~~~l~gH----------~~~v~~~---~ 253 (456)
T KOG0266|consen 204 ---------------RGVSDVAFSPDGS--YLLSGSDDKTLRIWDLKDDGRNLKTLKGH----------STYVTSV---A 253 (456)
T ss_pred ---------------cceeeeEECCCCc--EEEEecCCceEEEeeccCCCeEEEEecCC----------CCceEEE---E
Confidence 0000112334544 4566788999999999444 566666532 1223333 3
Q ss_pred ecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEee
Q 016769 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK 301 (383)
Q Consensus 222 ~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~ 301 (383)
|.|.. ..+++|+.|++|+|||+++ +.+...++.|..+|.+++|.+++..+++++.|+.|++||+......+ .+
T Consensus 254 f~p~g----~~i~Sgs~D~tvriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~--~~ 326 (456)
T KOG0266|consen 254 FSPDG----NLLVSGSDDGTVRIWDVRT-GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLC--LK 326 (456)
T ss_pred ecCCC----CEEEEecCCCcEEEEeccC-CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceee--ee
Confidence 54432 3689999999999999998 66788999999999999999999999999999999999998654221 12
Q ss_pred eeecCCC--CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccc---eeEEEEeCCCCEEEEEeCCCcEEEE
Q 016769 302 EINLERP--GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT---CNAVSFSSDCKLMASASEDSTVALW 376 (383)
Q Consensus 302 ~~~~~~~--~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~---v~~v~~spd~~~las~s~d~~i~~w 376 (383)
.+..... .++.+.|+|+++++++++.|+.+++||+..++....+.+|... +.+..++++++++.+|+.|+.|++|
T Consensus 327 ~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~ 406 (456)
T KOG0266|consen 327 LLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVW 406 (456)
T ss_pred cccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEE
Confidence 2222222 5899999999999999999999999999999999999999874 4444567899999999999999999
Q ss_pred eCCC
Q 016769 377 ELYP 380 (383)
Q Consensus 377 ~~~~ 380 (383)
|+..
T Consensus 407 ~~~s 410 (456)
T KOG0266|consen 407 DSSS 410 (456)
T ss_pred eCCc
Confidence 9863
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=178.62 Aligned_cols=191 Identities=21% Similarity=0.312 Sum_probs=142.7
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC---
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN--- 249 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~--- 249 (383)
.+++++.|+++++|-.+.+.......+.. ..++..+-+..+. + ...++++|+.|.+|+||+..+
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~------~GHk~~V~sVsv~---~----sgtr~~SgS~D~~lkiWs~~~~~~ 227 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKVC------RGHKRSVDSVSVD---S----SGTRFCSGSWDTMLKIWSVETDEE 227 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhHh------cccccceeEEEec---C----CCCeEEeecccceeeecccCCCcc
Confidence 45677889999999988766433222110 0122222233322 1 123688999999999999311
Q ss_pred ---------------------CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC
Q 016769 250 ---------------------PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 250 ---------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
.+.|+.++.+|.++|..+.|++ ...+++++.|.+|+.||+........+ ....
T Consensus 228 ~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~-----~~~k 301 (423)
T KOG0313|consen 228 DELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL-----TTNK 301 (423)
T ss_pred ccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee-----ecCc
Confidence 1346778899999999999987 456799999999999999865432221 1234
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCc---eEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCCCCC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGS---ALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYPPH 382 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~~~~ 382 (383)
.+++++++|..+.|++|+.|+-|++||.+++. ...++.+|.+.|.++.|+|... +|++||.|+++++||+..+.
T Consensus 302 sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 302 SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 68999999999999999999999999998753 2357889999999999999876 89999999999999997654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=189.67 Aligned_cols=331 Identities=21% Similarity=0.234 Sum_probs=205.5
Q ss_pred CCCCCCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEec
Q 016769 3 KRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (383)
Q Consensus 3 ~~~~~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (383)
+||.|+....+++||++.|++|...|.|.+|+|||.||+||||.+.+++|+...... .-|.+++|.|..+...| .+
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vL-Av 460 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVL-AV 460 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeE-EE
Confidence 588999999999999999999999999999999999999999999999998765332 35789999986433333 33
Q ss_pred ccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCcccee
Q 016769 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEII 162 (383)
Q Consensus 83 ~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (383)
+...++-+-|..=|..+. ... .+.....+-....+. .....+.................+.+.+
T Consensus 461 A~~~~~~ivnp~~G~~~e-----~~~----------t~ell~~~~~~~~p~-~~~~~W~~~~~~e~~~~v~~~I~~~k~i 524 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLE-----VGP----------TKELLASAPNESEPD-AAVVTWSRASLDELEKGVCIVIKHPKSI 524 (733)
T ss_pred EecCceEEeCccccchhh-----hcc----------hhhhhhcCCCccCCc-ccceeechhhhhhhccceEEEEecCCcc
Confidence 433445555432221000 000 000000000000000 0000000000000000000000001111
Q ss_pred cc--cCCCCCceeeeccC--CcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeC
Q 016769 163 DD--VPAEGPKYMAVAGE--QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 238 (383)
Q Consensus 163 ~~--~~~~~~~~~~~~g~--~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~ 238 (383)
.+ ....| .|++++.. ....|.|.+|........+. -.++..++. .|.|... .++.++
T Consensus 525 ~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ~PF~----------kskG~vq~v---~FHPs~p----~lfVaT- 585 (733)
T KOG0650|consen 525 RQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQSPFR----------KSKGLVQRV---KFHPSKP----YLFVAT- 585 (733)
T ss_pred ceeeeecCC-ceEEEeccCCCcceEEEEecccccccCchh----------hcCCceeEE---EecCCCc----eEEEEe-
Confidence 11 11223 45555432 22457777775544322221 122334443 3555432 355555
Q ss_pred CCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCC
Q 016769 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 318 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 318 (383)
...|++||+.+ ....+.+......|..|++++.|+.++.++.|+.+..+|++-.+... +.+..|...+++++||+-
T Consensus 586 q~~vRiYdL~k-qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy---k~lr~H~~avr~Va~H~r 661 (733)
T KOG0650|consen 586 QRSVRIYDLSK-QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY---KTLRLHEKAVRSVAFHKR 661 (733)
T ss_pred ccceEEEehhH-HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh---HHhhhhhhhhhhhhhccc
Confidence 56899999976 33344444445678899999999999999999999999998654321 345567778999999999
Q ss_pred CcEEEEEeCCCcEEEEEc------CCC---ceEEEecccccc----eeEEEEeCCCCEEEEEeCCCcEEEE
Q 016769 319 SKIAATAGWDRRVRIYNY------RKG---SALAILKYHHAT----CNAVSFSSDCKLMASASEDSTVALW 376 (383)
Q Consensus 319 ~~~l~s~~~dg~i~iwd~------~~~---~~~~~~~~h~~~----v~~v~~spd~~~las~s~d~~i~~w 376 (383)
-.+|++|+.||++.+|.- ... -+++.+++|... |..+.|||...+|++++.||+|++|
T Consensus 662 yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 662 YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 999999999999999954 222 345788899877 8999999999999999999999998
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=191.21 Aligned_cols=298 Identities=19% Similarity=0.283 Sum_probs=195.3
Q ss_pred ecCCcee---eEEEe-CCCCeEEEecCCCeEEEeeCccccc------ccccccccccceeeeeeecCCCCcceeEecccC
Q 016769 16 GHRASVT---DVCFH-QTKPILFAGTTGGELRIWDTVQHRT------VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 16 gH~~~V~---~v~f~-~~~~~L~sgs~D~~v~vW~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
.|...|. ++..+ |.+++|+|||.||.|++|++..... ......|..- +--+.... .++.|+|+|.|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDW--VNDiiL~~--~~~tlIS~SsD 94 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDW--VNDIILCG--NGKTLISASSD 94 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhH--HhhHHhhc--CCCceEEecCC
Confidence 4555565 45554 4567899999999999999865432 3333344321 11112222 34689999999
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
.||++|+...+.. -.+.+++++..+.-.+.
T Consensus 95 tTVK~W~~~~~~~--~c~stir~H~DYVkcla------------------------------------------------ 124 (735)
T KOG0308|consen 95 TTVKVWNAHKDNT--FCMSTIRTHKDYVKCLA------------------------------------------------ 124 (735)
T ss_pred ceEEEeecccCcc--hhHhhhhcccchheeee------------------------------------------------
Confidence 9999999876531 01112222211100000
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCe--eeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
.+.....++++|+-|+.|.+||++++.. +.+..+ ....+....++..++..+. ++....+++|+-.+.|+
T Consensus 125 ~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~-~t~~sl~sG~k~siYSLA~-------N~t~t~ivsGgtek~lr 196 (735)
T KOG0308|consen 125 YIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN-VTVNSLGSGPKDSIYSLAM-------NQTGTIIVSGGTEKDLR 196 (735)
T ss_pred ecccCceeEEecCCCccEEEEEccCcchhhhhhccc-cccccCCCCCccceeeeec-------CCcceEEEecCcccceE
Confidence 0112245788899999999999998743 333221 1111112123333333222 12223577899999999
Q ss_pred EEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEE
Q 016769 244 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 323 (383)
Q Consensus 244 ~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 323 (383)
+||.++... +..+.+|++.|.++-.+.++..+++++.|++|++|||..+ +|... ...|..++.++..+|+-.++.
T Consensus 197 ~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ--rCl~T--~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 197 LWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ--RCLAT--YIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred Eeccccccc-eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc--ceeee--EEeccCceEEEeeCCCcceEE
Confidence 999998655 5567899999999999999999999999999999999754 44443 334556799999999999999
Q ss_pred EEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 324 TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 324 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+|+.||.|..=|+++......+-..+.+|..+..+-...-+=.++.|+.|+-|.+.+
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 999999999999987543333434566677777664444446677899999998754
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=183.86 Aligned_cols=309 Identities=14% Similarity=0.131 Sum_probs=199.7
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccc---ccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
.|.+|+..|.++++.|.|..|+|||-|-+|++||+..-.. -.........|.+-++.+++. ++.++..+.....+
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T--g~~iLvvsg~aqak 239 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT--GDQILVVSGSAQAK 239 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC--CCeEEEEecCccee
Confidence 6899999999999999999999999999999999753211 111111234567888999984 56777777777889
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+.|-..-+.. ..+ .+..++.....++ ++.... .-....+..
T Consensus 240 l~DRdG~~~~----e~~-KGDQYI~Dm~nTK-----------------------------GHia~l-----t~g~whP~~ 280 (641)
T KOG0772|consen 240 LLDRDGFEIV----EFS-KGDQYIRDMYNTK-----------------------------GHIAEL-----TCGCWHPDN 280 (641)
T ss_pred EEccCCceee----eee-ccchhhhhhhccC-----------------------------Cceeee-----eccccccCc
Confidence 9985432110 000 0000000000011 111000 000112222
Q ss_pred CceeeeccCCcceEEEEecCCCC-eeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
+..+ .+.+.|+++|+||+.+.+ ++..+.... ....++-.. ...|.++ ...+++|..||.|.+||.+
T Consensus 281 k~~F-lT~s~DgtlRiWdv~~~k~q~qVik~k~-------~~g~Rv~~t-sC~~nrd----g~~iAagc~DGSIQ~W~~~ 347 (641)
T KOG0772|consen 281 KEEF-LTCSYDGTLRIWDVNNTKSQLQVIKTKP-------AGGKRVPVT-SCAWNRD----GKLIAAGCLDGSIQIWDKG 347 (641)
T ss_pred ccce-EEecCCCcEEEEecCCchhheeEEeecc-------CCCcccCce-eeecCCC----cchhhhcccCCceeeeecC
Confidence 2223 344678999999998765 333332100 001111111 1134333 2357789999999999986
Q ss_pred CCC--Cceeeeecccc--CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEE
Q 016769 249 NPG--IPLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 324 (383)
Q Consensus 249 ~~~--~~~~~~~~h~~--~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s 324 (383)
+-. ..+..-+.|.. .|.|+.|+.++++|++=|.|+++++|||+.... ++....--.....-+.++|+|+.+.|++
T Consensus 348 ~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk-pL~~~tgL~t~~~~tdc~FSPd~kli~T 426 (641)
T KOG0772|consen 348 SRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK-PLNVRTGLPTPFPGTDCCFSPDDKLILT 426 (641)
T ss_pred CcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc-chhhhcCCCccCCCCccccCCCceEEEe
Confidence 532 12344567876 899999999999999999999999999986532 2222111111234567889999999999
Q ss_pred EeC------CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 016769 325 AGW------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376 (383)
Q Consensus 325 ~~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w 376 (383)
|+. .|++.+||..+-..++.+.--...|..+.|+|.=+.+..|+.||+++++
T Consensus 427 GtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 427 GTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 874 5789999999988888777667778889999988889999999999986
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-23 Score=171.16 Aligned_cols=241 Identities=20% Similarity=0.318 Sum_probs=170.5
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..+..+.|.| ++..|+|+|.|..|-+|++-... .. ...++.++... ..
T Consensus 48 geI~~~~F~P--~gs~~aSgG~Dr~I~LWnv~gdc-eN--~~~lkgHsgAV--M~------------------------- 95 (338)
T KOG0265|consen 48 GEIYTIKFHP--DGSCFASGGSDRAIVLWNVYGDC-EN--FWVLKGHSGAV--ME------------------------- 95 (338)
T ss_pred ceEEEEEECC--CCCeEeecCCcceEEEEeccccc-cc--eeeecccccee--Ee-------------------------
Confidence 4577888999 57899999999999999974321 00 01111000000 00
Q ss_pred ccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEee
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 222 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 222 (383)
.....++. .+++.+.|.+++.||+++++++.+++.+... +. ..
T Consensus 96 --------------------l~~~~d~s--~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~-------------vN--s~ 138 (338)
T KOG0265|consen 96 --------------------LHGMRDGS--HILSCGTDKTVRGWDAETGKRIRKHKGHTSF-------------VN--SL 138 (338)
T ss_pred --------------------eeeccCCC--EEEEecCCceEEEEecccceeeehhccccce-------------ee--ec
Confidence 00112222 2344456889999999999988777653211 11 11
Q ss_pred cCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee
Q 016769 223 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE 302 (383)
Q Consensus 223 ~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~ 302 (383)
.|.+. +...+.+|+.|+++++||+|+. .+++++.. ...+..+.|.......++|+.|+.|++||+....+. ..
T Consensus 139 ~p~rr-g~~lv~SgsdD~t~kl~D~R~k-~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~----~~ 211 (338)
T KOG0265|consen 139 DPSRR-GPQLVCSGSDDGTLKLWDIRKK-EAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL----YT 211 (338)
T ss_pred Ccccc-CCeEEEecCCCceEEEEeeccc-chhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCcce----EE
Confidence 13322 2335778999999999999974 34444432 346788999888888999999999999999755443 34
Q ss_pred eecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCC----CceEEEeccccc----ceeEEEEeCCCCEEEEEeCCCcEE
Q 016769 303 INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK----GSALAILKYHHA----TCNAVSFSSDCKLMASASEDSTVA 374 (383)
Q Consensus 303 ~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~h~~----~v~~v~~spd~~~las~s~d~~i~ 374 (383)
+..+...|+.++.+|+|.++.+-+.|.++++||++. .+++..+.+|.. .....+|||++..+.+|+.|..++
T Consensus 212 lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 212 LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVY 291 (338)
T ss_pred eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEE
Confidence 567788999999999999999999999999999964 344777777643 346678999999999999999999
Q ss_pred EEeCC
Q 016769 375 LWELY 379 (383)
Q Consensus 375 ~w~~~ 379 (383)
+||..
T Consensus 292 vwd~~ 296 (338)
T KOG0265|consen 292 VWDTT 296 (338)
T ss_pred Eeecc
Confidence 99974
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-21 Score=154.81 Aligned_cols=292 Identities=18% Similarity=0.281 Sum_probs=198.6
Q ss_pred ecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccc-----------cccc---cccccceeeeeeecCCCCcceeEe
Q 016769 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----------SSSW---VHSAAHGIVSVATGPSIGLNKVIS 81 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~-----------~~~~---~~~~~~~~~~~~~~~~~~~~~l~s 81 (383)
.-+..|++++|+|.|.+-+.||...++||-.......+ ..+. .| ....+.++++++. ++.+++
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~kh-hkgsiyc~~ws~~--geliat 106 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKH-HKGSIYCTAWSPC--GELIAT 106 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccc-cCccEEEEEecCc--cCeEEe
Confidence 45678999999999999999999999999864321110 1110 11 2246899999984 788999
Q ss_pred cccCCeEEEeecCCCCC--CC-CCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCc
Q 016769 82 QGRDGTVKCWDIENGGL--SS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRS 158 (383)
Q Consensus 82 ~~~D~ti~~Wd~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (383)
|+.|.+|++-..+...+ .. ...+.++.+..+ -
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtir---------------------------------------------d 141 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIR---------------------------------------------D 141 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCcee---------------------------------------------e
Confidence 99999999987754321 00 001111110000 0
Q ss_pred cceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeC
Q 016769 159 FEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 238 (383)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~ 238 (383)
..++ .-+..+..+++.+|..|-.|.+-|-.+++....+.. + .+..++...+ + ..-+++|++
T Consensus 142 l~fl-d~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg----------h--tghilalysw--n----~~m~~sgsq 202 (350)
T KOG0641|consen 142 LAFL-DDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG----------H--TGHILALYSW--N----GAMFASGSQ 202 (350)
T ss_pred eEEe-cCCCcCceEEEecCCCcceEEEeecCCCCcceeecC----------C--cccEEEEEEe--c----CcEEEccCC
Confidence 0111 111233456677777677787777766665443322 1 2333333222 1 123678999
Q ss_pred CCcEEEEeCCCCCCceeeee--c-----cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 239 DGSILVWDIRNPGIPLTAMK--V-----HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~--~-----h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
|++|++||++-+.. +.++. . ....|..++++|+++.+++|-.|....+||++.. +..+ ....+...|.
T Consensus 203 dktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~--r~iq--~f~phsadir 277 (350)
T KOG0641|consen 203 DKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG--RMIQ--RFHPHSADIR 277 (350)
T ss_pred CceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC--ceee--eeCCCcccee
Confidence 99999999986432 33221 1 2357899999999999999999999999999743 3332 3445677899
Q ss_pred EEEECCCCcEEEEEeCCCcEEEEEcCC----CceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 312 GTSIRPDSKIAATAGWDRRVRIYNYRK----GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
++.|+|...|+.+++.|.+|++=|+.- .-++-....|+..+..+.|+|..--+++.|.|.++.+|-+.
T Consensus 278 ~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 278 CVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999999999999999999999842 12233556799999999999998889999999999999874
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=178.00 Aligned_cols=285 Identities=18% Similarity=0.273 Sum_probs=189.3
Q ss_pred eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccc-cc------cc-------cc--cccceeeeeeecCCC
Q 016769 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-SS------SW-------VH--SAAHGIVSVATGPSI 74 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~-~~------~~-------~~--~~~~~~~~~~~~~~~ 74 (383)
..++..|.-+|.+|+++||.+++++++.|++|.=|++.+++.. .. +. .+ .+..-+.+++.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-- 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-- 212 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC--
Confidence 5678899999999999999999999999999999998776633 10 11 11 1112367778887
Q ss_pred CcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccc
Q 016769 75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKE 154 (383)
Q Consensus 75 ~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (383)
++.+|++|+.|..|.||++++.+.... .. .| +.
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~----~~---gh--------------------r~-------------------- 245 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKV----FK---GH--------------------RG-------------------- 245 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhc----cc---cc--------------------cc--------------------
Confidence 579999999999999999988753221 00 00 00
Q ss_pred cCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEE
Q 016769 155 SNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 234 (383)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (383)
.++..+...++.-+ .+++.|+++++|+++....+.++-. +++.++. +.++.- ...+.
T Consensus 246 -----~V~~L~fr~gt~~l-ys~s~Drsvkvw~~~~~s~vetlyG----------Hqd~v~~--IdaL~r-----eR~vt 302 (479)
T KOG0299|consen 246 -----AVSSLAFRKGTSEL-YSASADRSVKVWSIDQLSYVETLYG----------HQDGVLG--IDALSR-----ERCVT 302 (479)
T ss_pred -----ceeeeeeecCccce-eeeecCCceEEEehhHhHHHHHHhC----------Cccceee--echhcc-----cceEE
Confidence 00000111122222 2456789999999987666555432 2222111 111111 11234
Q ss_pred EEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCC-------
Q 016769 235 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER------- 307 (383)
Q Consensus 235 sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~------- 307 (383)
+|+.|.++++|++-... ...+.+|...+.|++|=.+ ..+++|+.+|.|.+|++......+..........
T Consensus 303 VGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~ 379 (479)
T KOG0299|consen 303 VGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNG 379 (479)
T ss_pred eccccceeEEEeccccc--eeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCcccccc
Confidence 47799999999995433 3445677778889888332 4579999999999999876543333222111111
Q ss_pred -CCeEEEEECCCCcEEEEEeCCCcEEEEEcCCC----ceEEEecccccceeEEEEeCCCCEE-EEEeCCC
Q 016769 308 -PGISGTSIRPDSKIAATAGWDRRVRIYNYRKG----SALAILKYHHATCNAVSFSSDCKLM-ASASEDS 371 (383)
Q Consensus 308 -~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~v~~spd~~~l-as~s~d~ 371 (383)
..|++++..|+..++|+|+++|.||+|-+..+ +++..+. -.+.|++++|+++|+.+ |..+...
T Consensus 380 ~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEh 448 (479)
T KOG0299|consen 380 NFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEH 448 (479)
T ss_pred ccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccc
Confidence 26899999999999999999999999999877 3344443 66789999999999954 4444443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-23 Score=172.05 Aligned_cols=305 Identities=16% Similarity=0.228 Sum_probs=195.2
Q ss_pred CCCCCCC-CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcc------cccc------------cccccccccc
Q 016769 3 KRPPPPD-PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HRTV------------SSSWVHSAAH 63 (383)
Q Consensus 3 ~~~~~~~-~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~------~~~~------------~~~~~~~~~~ 63 (383)
+.|.|++ ....|..|++++++-+|+|||.++||||.|-.|++.|++. .+.+ ..+..| ..
T Consensus 96 ~s~e~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH--~d 173 (430)
T KOG0640|consen 96 SSPEPSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH--VD 173 (430)
T ss_pred CCCCCcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhc--cC
Confidence 3443333 5567899999999999999999999999999999999861 1111 111112 23
Q ss_pred eeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcc
Q 016769 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET 143 (383)
Q Consensus 64 ~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (383)
.+-.+.|.|. ...|+|++.|+|||++|+......+. -......
T Consensus 174 evn~l~FHPr--e~ILiS~srD~tvKlFDfsK~saKrA----------------------~K~~qd~------------- 216 (430)
T KOG0640|consen 174 EVNDLDFHPR--ETILISGSRDNTVKLFDFSKTSAKRA----------------------FKVFQDT------------- 216 (430)
T ss_pred cccceeecch--hheEEeccCCCeEEEEecccHHHHHH----------------------HHHhhcc-------------
Confidence 4667888884 57899999999999999865421100 0000000
Q ss_pred cccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeec
Q 016769 144 VDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL 223 (383)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 223 (383)
+. .-..+|.+.| .|+++ |.+..++|+||+++.++......+ ..+.+.+ . ...+.
T Consensus 217 ----------~~----vrsiSfHPsG-efllv-gTdHp~~rlYdv~T~QcfvsanPd-------~qht~ai--~-~V~Ys 270 (430)
T KOG0640|consen 217 ----------EP----VRSISFHPSG-EFLLV-GTDHPTLRLYDVNTYQCFVSANPD-------DQHTGAI--T-QVRYS 270 (430)
T ss_pred ----------ce----eeeEeecCCC-ceEEE-ecCCCceeEEeccceeEeeecCcc-------cccccce--e-EEEec
Confidence 00 0011233444 46655 566789999999998865433211 0111111 1 11233
Q ss_pred CCCCCCceEEEEEeCCCcEEEEeCCCCCCceeee-ecccc-CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEee
Q 016769 224 PSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLE-PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK 301 (383)
Q Consensus 224 ~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~-~~h~~-~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~ 301 (383)
+. ....++|+.||.|+|||=-+.+ ++.++ +.|.. .|.+..|..+++++++.|.|..+++|.+.. ++++...
T Consensus 271 ~t----~~lYvTaSkDG~IklwDGVS~r-Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t--~R~l~~Y 343 (430)
T KOG0640|consen 271 ST----GSLYVTASKDGAIKLWDGVSNR-CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST--GRMLKEY 343 (430)
T ss_pred CC----ccEEEEeccCCcEEeeccccHH-HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC--CceEEEE
Confidence 22 2357899999999999966543 34444 45654 677888999999999999999999999864 3444332
Q ss_pred eee---cCCCCeEEEEECCCCcEEEEEe-CCCcEEEEEcCCCceEEEe-cccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 016769 302 EIN---LERPGISGTSIRPDSKIAATAG-WDRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALW 376 (383)
Q Consensus 302 ~~~---~~~~~i~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~spd~~~las~s~d~~i~~w 376 (383)
.-- ..+.--+...|+....|++.-. ..+.+.-||.++......+ .+|.+.+..+.-||.+.-+.++|.|-.+++|
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFW 423 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeee
Confidence 211 0111122334554444544332 2345667999887655433 3799999999999999999999999999999
Q ss_pred eCC
Q 016769 377 ELY 379 (383)
Q Consensus 377 ~~~ 379 (383)
--.
T Consensus 424 yrr 426 (430)
T KOG0640|consen 424 YRR 426 (430)
T ss_pred eec
Confidence 643
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-22 Score=189.78 Aligned_cols=231 Identities=15% Similarity=0.236 Sum_probs=149.5
Q ss_pred eeeeecCCceeeEEEeC-CCCeEEEecCCCeEEEeeCcccc-------cccccccccccceeeeeeecCCCCcceeEecc
Q 016769 12 AVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR-------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~-~~~~L~sgs~D~~v~vW~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (383)
..|.||++.|++++|+| ++.+|+|||.|++|++||+.+.. .+..+..|. ..+.++.|.|. +.+.|++++
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~--~~V~~l~f~P~-~~~iLaSgs 145 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT--KKVGIVSFHPS-AMNVLASAG 145 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC--CcEEEEEeCcC-CCCEEEEEe
Confidence 35889999999999999 88999999999999999986542 122333332 45778888884 236889999
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
.|++|++||++++.... .+.
T Consensus 146 ~DgtVrIWDl~tg~~~~----~l~-------------------------------------------------------- 165 (493)
T PTZ00421 146 ADMVVNVWDVERGKAVE----VIK-------------------------------------------------------- 165 (493)
T ss_pred CCCEEEEEECCCCeEEE----EEc--------------------------------------------------------
Confidence 99999999997652100 000
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
+. ...| .++ .|.++ ...+++++.|++|+
T Consensus 166 -------------~h-~~~V-------------------------------~sl---a~spd----G~lLatgs~Dg~Ir 193 (493)
T PTZ00421 166 -------------CH-SDQI-------------------------------TSL---EWNLD----GSLLCTTSKDKKLN 193 (493)
T ss_pred -------------CC-CCce-------------------------------EEE---EEECC----CCEEEEecCCCEEE
Confidence 00 0000 000 01111 01356677777777
Q ss_pred EEeCCCCCCceeeeeccccCe-EEEEEeCCCCceEEEE----cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCC
Q 016769 244 VWDIRNPGIPLTAMKVHLEPV-LCLSIDESCNGGISGG----ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 318 (383)
Q Consensus 244 ~wdl~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~s~~----~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 318 (383)
+||++++. .+..+..|.... ..+.|.+....+++++ .|+.|++||++........ .... ....+....|+++
T Consensus 194 IwD~rsg~-~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~-~~~d-~~~~~~~~~~d~d 270 (493)
T PTZ00421 194 IIDPRDGT-IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST-VDLD-QSSALFIPFFDED 270 (493)
T ss_pred EEECCCCc-EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE-eccC-CCCceEEEEEcCC
Confidence 77777643 345556665432 3445555555555544 4789999999754422211 1111 1234556678999
Q ss_pred CcEEEEEe-CCCcEEEEEcCCCceEEEecc-cccceeEEEEeCC
Q 016769 319 SKIAATAG-WDRRVRIYNYRKGSALAILKY-HHATCNAVSFSSD 360 (383)
Q Consensus 319 ~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~spd 360 (383)
++++++++ .|++|++||+.+++.+..... +..++..++|.|.
T Consensus 271 ~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 271 TNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 99998887 599999999999887766543 4456777888874
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=178.61 Aligned_cols=279 Identities=17% Similarity=0.241 Sum_probs=190.3
Q ss_pred CCceeeEEEeCCCCe--EEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCC
Q 016769 18 RASVTDVCFHQTKPI--LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~--L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~ 95 (383)
..+|.+|+|+|..++ .+|+|. +|.+++..+......+. .....+.++.|.. +|..|+.|...|.|+++|+.+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~k~~s--rFk~~v~s~~fR~--DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVRKTFS--RFKDVVYSVDFRS--DGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred cCcceeEecCCCCCCceEEeccc--EEEEEecchhhhhhhHH--hhccceeEEEeec--CCeEEEccCCcCcEEEecccc
Confidence 468999999997653 444443 58889876543222211 1123466777776 467788888999999999543
Q ss_pred CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeee
Q 016769 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAV 175 (383)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (383)
...++ .+..++...|. ..+++.+ .-+++
T Consensus 100 r~iLR--~~~ah~apv~~-------------------------------------------------~~f~~~d-~t~l~ 127 (487)
T KOG0310|consen 100 RVILR--QLYAHQAPVHV-------------------------------------------------TKFSPQD-NTMLV 127 (487)
T ss_pred HHHHH--HHhhccCceeE-------------------------------------------------EEecccC-CeEEE
Confidence 21100 00000000000 1122222 23677
Q ss_pred ccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCcee
Q 016769 176 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 255 (383)
Q Consensus 176 ~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~ 255 (383)
+|++|+.+++||+.+......+.. +.+++-|.++ .|.+ ..-+++|++||+||+||++.....+.
T Consensus 128 s~sDd~v~k~~d~s~a~v~~~l~~----------htDYVR~g~~---~~~~---~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 128 SGSDDKVVKYWDLSTAYVQAELSG----------HTDYVRCGDI---SPAN---DHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred ecCCCceEEEEEcCCcEEEEEecC----------CcceeEeecc---ccCC---CeEEEecCCCceEEEEEeccCCceeE
Confidence 889999999999988775333332 2334444433 2211 12478999999999999998654444
Q ss_pred eeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEE
Q 016769 256 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 335 (383)
Q Consensus 256 ~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd 335 (383)
.+ .|..||..+-+-|.+..++++ ..+.+++||+-.... + ...+..|...|+|+++..++..|++|+-|+.+++||
T Consensus 192 el-nhg~pVe~vl~lpsgs~iasA-gGn~vkVWDl~~G~q--l-l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 192 EL-NHGCPVESVLALPSGSLIASA-GGNSVKVWDLTTGGQ--L-LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred Ee-cCCCceeeEEEcCCCCEEEEc-CCCeEEEEEecCCce--e-hhhhhcccceEEEEEeecCCceEeecccccceEEEE
Confidence 44 488899999999887766665 466799999974321 1 112333667899999999999999999999999999
Q ss_pred cCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 016769 336 YRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376 (383)
Q Consensus 336 ~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w 376 (383)
+.+-+.+..++ ..++|.+++.+||++.++.|..||.+.+=
T Consensus 267 ~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 267 TTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ccceEEEEeee-cccceeeEEecCCCceEEEecccceeeee
Confidence 88888888874 78899999999999999999999988664
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=167.07 Aligned_cols=296 Identities=19% Similarity=0.292 Sum_probs=200.2
Q ss_pred eeeeecCCceeeEEEeC-CCCeEEEecCCCeEEEeeCcccc------------cccccccccccc--eeeeeeecCCCCc
Q 016769 12 AVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR------------TVSSSWVHSAAH--GIVSVATGPSIGL 76 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~-~~~~L~sgs~D~~v~vW~~~~~~------------~~~~~~~~~~~~--~~~~~~~~~~~~~ 76 (383)
...+-|.+.|+++...+ .|++++||++||.+.|||+++.. |. .-..|...| .+..+.+.|- +.
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~-v~~~h~~~Hky~iss~~WyP~-Dt 114 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI-VAKQHENGHKYAISSAIWYPI-DT 114 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeee-ccccCCccceeeeeeeEEeee-cC
Confidence 34568999999999977 68999999999999999986532 11 111232222 3555666664 44
Q ss_pred ceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccC
Q 016769 77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESN 156 (383)
Q Consensus 77 ~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (383)
..|.|++-|.++|+||.++-+... .+.+ + ..++....
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~--~F~m---------------e----------~~VYsham---------------- 151 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAV--DFKM---------------E----------GKVYSHAM---------------- 151 (397)
T ss_pred ceeecccccceEEEeecccceeeE--Eeec---------------C----------ceeehhhc----------------
Confidence 688999999999999987642100 0000 0 00000000
Q ss_pred CccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEE
Q 016769 157 RSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 236 (383)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 236 (383)
.+-.....++++|..+-.||+=|+.++..-..+..+ +.-++++. ++|... -.+.+|
T Consensus 152 --------Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH------------r~~vlaV~-Wsp~~e---~vLatg 207 (397)
T KOG4283|consen 152 --------SPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH------------RDGVLAVE-WSPSSE---WVLATG 207 (397)
T ss_pred --------ChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc------------cCceEEEE-eccCce---eEEEec
Confidence 001111357778888889999999998876666531 22234443 555532 247789
Q ss_pred eCCCcEEEEeCCCCCCceee--------------eeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee
Q 016769 237 YEDGSILVWDIRNPGIPLTA--------------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE 302 (383)
Q Consensus 237 ~~dg~i~~wdl~~~~~~~~~--------------~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~ 302 (383)
+.||.|++||++...-++.. -..|++.|+.++|..++..+++++.|.++++|+...... .++..
T Consensus 208 saDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n--tl~~~ 285 (397)
T KOG4283|consen 208 SADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN--TLREF 285 (397)
T ss_pred CCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc--ccccc
Confidence 99999999999864222332 345777899999999999999999999999999865432 22211
Q ss_pred eecCCCCeEEEEE---CCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 303 INLERPGISGTSI---RPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 303 ~~~~~~~i~~~~~---~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
.+.....-..+++ +-+...++---.|+.+.++++..+..+..++.|-+.|.|.++-|+-+...+|+.|+.|..|-.
T Consensus 286 g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 286 GPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 1111111111222 223334555567799999999999999999999999999999999999999999999999965
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=183.94 Aligned_cols=324 Identities=19% Similarity=0.295 Sum_probs=198.3
Q ss_pred eeEEEeCCCCeEEEecCCCeEEEeeCcccccccccc---cccccceeeeeeecC---------CCCcceeEecccCCeEE
Q 016769 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGP---------SIGLNKVISQGRDGTVK 89 (383)
Q Consensus 22 ~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~l~s~~~D~ti~ 89 (383)
-++.|++..++|...-.|+.+.|||+..-+++.... -|. ..+..+...| .+...-|+|++.|+|||
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS--~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHS--ACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeecc--ceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 467899999999999999999999986654443221 122 2333333222 01124589999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcc-cccCccccccccCCccceecccCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET-VDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
+||++.+.. +.. .+. ......+.+.++........ .+...+.. ......++.....++. .++++
T Consensus 406 lW~l~~ctn--n~v--yrR---Nils~~l~ki~y~d~~~q~~----~d~~~~~fdka~~s~~d~r~G~R~~----~vSp~ 470 (1080)
T KOG1408|consen 406 LWDLAFCTN--NQV--YRR---NILSANLSKIPYEDSTQQIM----HDASAGIFDKALVSTCDSRFGFRAL----AVSPD 470 (1080)
T ss_pred Eeecccccc--cce--eec---ccchhhhhcCccccCchhhh----hhccCCcccccchhhcCcccceEEE----EECCC
Confidence 999976321 100 000 01111222222211000000 00000000 0000011111111122 23456
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
++ .+++|+..|.+|++||..-...+.+..+ ...++|+... .|. -+...+++++.|.-|.+||..
T Consensus 471 gq--hLAsGDr~GnlrVy~Lq~l~~~~~~eAH----------esEilcLeyS--~p~--~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 471 GQ--HLASGDRGGNLRVYDLQELEYTCFMEAH----------ESEILCLEYS--FPV--LTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred cc--eecccCccCceEEEEehhhhhhhheecc----------cceeEEEeec--Cch--hhhHhhhhccCCceEEEEecc
Confidence 54 4577888899999999876655555432 2234554321 111 122357789999999999974
Q ss_pred CCCCceeeeeccc-------------------------------------------------cCeEEEEEeCCCCceEEE
Q 016769 249 NPGIPLTAMKVHL-------------------------------------------------EPVLCLSIDESCNGGISG 279 (383)
Q Consensus 249 ~~~~~~~~~~~h~-------------------------------------------------~~v~~~~~~~~~~~~~s~ 279 (383)
....++.++.+|. .-+..|.++|..+..+++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 3221112221221 234567777777777888
Q ss_pred EcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeC
Q 016769 280 GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS 359 (383)
Q Consensus 280 ~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp 359 (383)
+.|..|+|||++.......++ .-..+.+..-.+.+.|.|.|+|+.+.|+++.++|..+++++.+.-||.+.|..+.|.+
T Consensus 615 cQDrnirif~i~sgKq~k~FK-gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFK-GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred ecccceEEEeccccceeeeec-ccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc
Confidence 888888888887542222221 1122445677888999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 016769 360 DCKLMASASEDSTVALWELY 379 (383)
Q Consensus 360 d~~~las~s~d~~i~~w~~~ 379 (383)
|.++|++.+.||+|.+|.+.
T Consensus 694 DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cchhheeecCCceEEEEECc
Confidence 99999999999999999984
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=166.46 Aligned_cols=245 Identities=18% Similarity=0.302 Sum_probs=165.0
Q ss_pred CCceeeEEEeCCC-CeEEEecCCCeEEEeeCccc-ccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCC
Q 016769 18 RASVTDVCFHQTK-PILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (383)
Q Consensus 18 ~~~V~~v~f~~~~-~~L~sgs~D~~v~vW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~ 95 (383)
.+.+..|+++++. +.+++++.||++|+||.... .++...+.|. ..+.++.+.+. ....++++|+|+|||+|+...
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~--~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHK--REVYSVDWNTV-RRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhh--hheEEeccccc-cceeEEeeccCCceEeecCCC
Confidence 5778899999864 68999999999999995432 3333433333 45888888875 346778889999999999876
Q ss_pred CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeee
Q 016769 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAV 175 (383)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (383)
+.-. .+...+. .| ++. ..+++.-+. +++
T Consensus 137 ~~Sv----~Tf~gh~--~~--------------------Iy~-------------------------a~~sp~~~n-lfa 164 (311)
T KOG0277|consen 137 PNSV----QTFNGHN--SC--------------------IYQ-------------------------AAFSPHIPN-LFA 164 (311)
T ss_pred Ccce----EeecCCc--cE--------------------EEE-------------------------EecCCCCCC-eEE
Confidence 5311 1110000 00 000 011122222 345
Q ss_pred ccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCcee
Q 016769 176 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 255 (383)
Q Consensus 176 ~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~ 255 (383)
+.+.|+++++||++..-..+.++-+ ....+|+--.+ .+...+++|+.|+.|+.||+++-+.|+.
T Consensus 165 s~Sgd~~l~lwdvr~~gk~~~i~ah----------~~Eil~cdw~k------y~~~vl~Tg~vd~~vr~wDir~~r~pl~ 228 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKFMSIEAH----------NSEILCCDWSK------YNHNVLATGGVDNLVRGWDIRNLRTPLF 228 (311)
T ss_pred EccCCceEEEEEecCCCceeEEEec----------cceeEeecccc------cCCcEEEecCCCceEEEEehhhccccce
Confidence 5566899999999775433334321 12334432221 1223588999999999999999888999
Q ss_pred eeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC-CCcEEEEEeCCCcEEE
Q 016769 256 AMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRRVRI 333 (383)
Q Consensus 256 ~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~s~~~dg~i~i 333 (383)
.+.+|.-+|+.+.++|... .+++++.|=++++||...... . ......|..-+.++.+++ ++.++|+.++|+.++|
T Consensus 229 eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds-~--~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~V 305 (311)
T KOG0277|consen 229 ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS-A--IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYV 305 (311)
T ss_pred eecCCceEEEEEecCcchhhHhhhccccceEEecccccchh-h--hhhhhccceEEeccccccccCceeeecccccceee
Confidence 9999999999999988654 568999999999999874332 1 112233444577777775 4679999999999999
Q ss_pred EEc
Q 016769 334 YNY 336 (383)
Q Consensus 334 wd~ 336 (383)
|+.
T Consensus 306 w~p 308 (311)
T KOG0277|consen 306 WNP 308 (311)
T ss_pred ecc
Confidence 984
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-23 Score=182.70 Aligned_cols=242 Identities=21% Similarity=0.321 Sum_probs=175.6
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCC-CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccC
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG 141 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (383)
.++.++.+.|. .+..|+|+|.|+.|+||++-. +.+.+ +-..|. .+ +.+
T Consensus 215 kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~lr-------tf~gH~-------k~------------Vrd---- 263 (503)
T KOG0282|consen 215 KGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRCLR-------TFKGHR-------KP------------VRD---- 263 (503)
T ss_pred cccchhhhccc-eeeEEEecCCCceEEEEEEecCcceeh-------hhhcch-------hh------------hhh----
Confidence 46777777774 357889999999999999854 32222 110010 00 000
Q ss_pred cccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEe
Q 016769 142 ETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221 (383)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 221 (383)
..+...|..++ +++-|+.+++||+++++++.++..+.. ..++.
T Consensus 264 ---------------------~~~s~~g~~fL--S~sfD~~lKlwDtETG~~~~~f~~~~~--------------~~cvk 306 (503)
T KOG0282|consen 264 ---------------------ASFNNCGTSFL--SASFDRFLKLWDTETGQVLSRFHLDKV--------------PTCVK 306 (503)
T ss_pred ---------------------hhccccCCeee--eeecceeeeeeccccceEEEEEecCCC--------------ceeee
Confidence 01223344443 345689999999999999888864321 12335
Q ss_pred ecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEee
Q 016769 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK 301 (383)
Q Consensus 222 ~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~ 301 (383)
|.|++ ...+++|+.|+.|+.||+|++. .+.....|..+|..+.|-+.+..+++.+.|+++++|+.+.+- .++.
T Consensus 307 f~pd~---~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v---~ik~ 379 (503)
T KOG0282|consen 307 FHPDN---QNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV---PIKN 379 (503)
T ss_pred cCCCC---CcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc---cchh
Confidence 66665 2357889999999999999854 466777899999999998889999999999999999986432 2223
Q ss_pred eeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCC---ceEEEeccccc--ceeEEEEeCCCCEEEEEeCCCcEEEE
Q 016769 302 EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG---SALAILKYHHA--TCNAVSFSSDCKLMASASEDSTVALW 376 (383)
Q Consensus 302 ~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~--~v~~v~~spd~~~las~s~d~~i~~w 376 (383)
....+.....++..+|+++++++=+.|..|.+|.+... ...+.+.+|.. .-..+.|||||++|++|+.||.+.+|
T Consensus 380 i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~w 459 (503)
T KOG0282|consen 380 IADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFW 459 (503)
T ss_pred hcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEe
Confidence 33444556788999999999999999999999988543 22356778864 45667899999999999999999999
Q ss_pred eCC
Q 016769 377 ELY 379 (383)
Q Consensus 377 ~~~ 379 (383)
|..
T Consensus 460 dwk 462 (503)
T KOG0282|consen 460 DWK 462 (503)
T ss_pred ech
Confidence 974
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=179.75 Aligned_cols=243 Identities=19% Similarity=0.259 Sum_probs=181.8
Q ss_pred ecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCC
Q 016769 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~ 95 (383)
-+.+.|+++.++++|.+|+.|-.+|.|.|||..+.+.+..+..+ +...+-++++. ...+.+|+.|+.|..+|+..
T Consensus 215 ~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 215 FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-HASRVGSLAWN----SSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC-cCceeEEEecc----CceEEEecCCCcEEEEEEec
Confidence 34899999999999999999999999999999887777666552 22345666665 36788999999999999865
Q ss_pred CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeee
Q 016769 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAV 175 (383)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (383)
.+..- .. +
T Consensus 290 ~~~~~------~~----------------------------------------------------------------~-- 297 (484)
T KOG0305|consen 290 SQHVV------ST----------------------------------------------------------------L-- 297 (484)
T ss_pred chhhh------hh----------------------------------------------------------------h--
Confidence 42100 00 0
Q ss_pred ccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCcee
Q 016769 176 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 255 (383)
Q Consensus 176 ~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~ 255 (383)
..+... ++.+ .+.++ ...+++|+.|+.+.|||... ..+..
T Consensus 298 -~~H~qe-----------VCgL-----------------------kws~d----~~~lASGgnDN~~~Iwd~~~-~~p~~ 337 (484)
T KOG0305|consen 298 -QGHRQE-----------VCGL-----------------------KWSPD----GNQLASGGNDNVVFIWDGLS-PEPKF 337 (484)
T ss_pred -hcccce-----------eeee-----------------------EECCC----CCeeccCCCccceEeccCCC-ccccE
Confidence 000000 1111 11111 12477899999999999855 44567
Q ss_pred eeeccccCeEEEEEeCCCCc-eEEE--EcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEe--CCCc
Q 016769 256 AMKVHLEPVLCLSIDESCNG-GISG--GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG--WDRR 330 (383)
Q Consensus 256 ~~~~h~~~v~~~~~~~~~~~-~~s~--~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~--~dg~ 330 (383)
.+..|..+|..++|+|.... ||+| +.|+.|++||..... .+. .. ...+.|+++.|++..+-|+++. .+..
T Consensus 338 ~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~--~i~--~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA--RID--SV-DTGSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc--Eec--cc-ccCCceeeEEEcCCCCEEEEecCCCCCc
Confidence 78889999999999997665 4554 469999999987432 221 11 2346799999999987666554 5778
Q ss_pred EEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 331 VRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 331 i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
|.||+..+.+.+..+.+|...|..+++||||..+++|+.|.++++|++++
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 99999999999999999999999999999999999999999999999986
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-22 Score=165.60 Aligned_cols=246 Identities=17% Similarity=0.309 Sum_probs=163.7
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
|...+..|.++|++||. +++++||||.|.+|+|||+.....+..+..| ...+.++.|.+....+.|+||+.||.|.
T Consensus 35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~H--agsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSH--AGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceecc--ccceEEEEecCCcchhheeeecCCCcEE
Confidence 57788999999999998 7899999999999999999887777777666 3568888888754445899999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+|++..=++ +.. .+.... ...-.++.|.+
T Consensus 111 iw~~~~W~~-------~~s----------lK~H~~----------------------------------~Vt~lsiHPS~ 139 (362)
T KOG0294|consen 111 IWRVGSWEL-------LKS----------LKAHKG----------------------------------QVTDLSIHPSG 139 (362)
T ss_pred EEEcCCeEE-------eee----------eccccc----------------------------------ccceeEecCCC
Confidence 999753211 000 000000 00001122333
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
+.-+ .+| .|+.+|+|+|-+++...
T Consensus 140 KLAL-sVg-~D~~lr~WNLV~Gr~a~------------------------------------------------------ 163 (362)
T KOG0294|consen 140 KLAL-SVG-GDQVLRTWNLVRGRVAF------------------------------------------------------ 163 (362)
T ss_pred ceEE-EEc-CCceeeeehhhcCccce------------------------------------------------------
Confidence 2222 222 24455666554433100
Q ss_pred CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCC
Q 016769 250 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 329 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg 329 (383)
...++ + ....+.|++.+..++.++.+ .|-+|.++.-.- + .++. ....+.++.|- ++.++++|+.|+
T Consensus 164 ----v~~L~-~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v---~-~~i~-~~~r~l~~~~l-~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 164 ----VLNLK-N--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASV---F-REIE-NPKRILCATFL-DGSELLVGGDNE 229 (362)
T ss_pred ----eeccC-C--cceeeEEcCCCCEEEEEecc-EEEEEecccHhH---h-hhhh-ccccceeeeec-CCceEEEecCCc
Confidence 00011 0 11126677777776665544 478887764211 1 0111 11235555665 566899999999
Q ss_pred cEEEEEcCCCceEEEecccccceeEEEE--eCCCCEEEEEeCCCcEEEEeCCC
Q 016769 330 RVRIYNYRKGSALAILKYHHATCNAVSF--SSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 330 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~--spd~~~las~s~d~~i~~w~~~~ 380 (383)
.|++||.++..++..+.+|++.|.++.+ .|++.+|+|+|.||.|++||+..
T Consensus 230 ~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 230 WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred eEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 9999999999999999999999999985 57888999999999999999964
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-21 Score=169.28 Aligned_cols=330 Identities=17% Similarity=0.283 Sum_probs=205.5
Q ss_pred eeecCCceeeEEEeCCCCeEEEecCCC--------eEEEeeCcccccccccccccccceeeeeeecCCCCcceeEe--cc
Q 016769 14 LRGHRASVTDVCFHQTKPILFAGTTGG--------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS--QG 83 (383)
Q Consensus 14 l~gH~~~V~~v~f~~~~~~L~sgs~D~--------~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--~~ 83 (383)
+.||++.|-|++.|||.-.+++|-..| +||+||..+...+..+. ....++.+++|++..+++.+.. -+
T Consensus 100 y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g--~f~~GV~~vaFsk~~~G~~l~~vD~s 177 (626)
T KOG2106|consen 100 YLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIG--FFDRGVTCVAFSKINGGSLLCAVDDS 177 (626)
T ss_pred ccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeec--cccccceeeeecccCCCceEEEecCC
Confidence 469999999999999998999888877 49999987776666554 2345789999998755555543 47
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
.+.-+.+||++.+..... ..+ .....-.+.+.. ..+........++-..|..+-+........ ..+..+.+....
T Consensus 178 ~~h~lSVWdWqk~~~~~~-vk~-sne~v~~a~FHP-td~nliit~Gk~H~~Fw~~~~~~l~k~~~~--fek~ekk~Vl~v 252 (626)
T KOG2106|consen 178 NPHMLSVWDWQKKAKLGP-VKT-SNEVVFLATFHP-TDPNLIITCGKGHLYFWTLRGGSLVKRQGI--FEKREKKFVLCV 252 (626)
T ss_pred CccccchhhchhhhccCc-cee-ccceEEEEEecc-CCCcEEEEeCCceEEEEEccCCceEEEeec--cccccceEEEEE
Confidence 788899999987643211 000 000000111111 011111111111111111111111111000 001111122222
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
.+..+|. .+.|+.+|.|.||+..+.+-..+.. .+++-++++... ..+ .+++|+.|..|.
T Consensus 253 ~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~----------aH~ggv~~L~~l------r~G--tllSGgKDRki~ 311 (626)
T KOG2106|consen 253 TFLENGD---VITGDSGGNILIWSKGTNRISKQVH----------AHDGGVFSLCML------RDG--TLLSGGKDRKII 311 (626)
T ss_pred EEcCCCC---EEeecCCceEEEEeCCCceEEeEee----------ecCCceEEEEEe------cCc--cEeecCccceEE
Confidence 3334443 3567888999999987655332222 233334443321 122 378899999999
Q ss_pred EEeCC--C------C---CC----------------------------ceeeeeccccCeEEEEEeCCCCceEEEEcCCc
Q 016769 244 VWDIR--N------P---GI----------------------------PLTAMKVHLEPVLCLSIDESCNGGISGGADQK 284 (383)
Q Consensus 244 ~wdl~--~------~---~~----------------------------~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~ 284 (383)
.||=. + + +. .....++|.+....++.+|+...+++++.|+.
T Consensus 312 ~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~ 391 (626)
T KOG2106|consen 312 LWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKH 391 (626)
T ss_pred eccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcce
Confidence 99821 0 0 00 00122467777888888999999999999999
Q ss_pred EEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEE
Q 016769 285 IVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM 364 (383)
Q Consensus 285 i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~l 364 (383)
+++|+ + .+..+.+. -...+.++.|+|.| .+|.|...|...+.|.++...+. +..-.+++++++|+|||.+|
T Consensus 392 v~lW~-~---~k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~~d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 392 VRLWN-D---HKLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IHTDNEQLSVVRYSPDGAFL 462 (626)
T ss_pred EEEcc-C---CceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EEecCCceEEEEEcCCCCEE
Confidence 99998 2 22233222 23568899999999 99999999999999999855443 33337899999999999999
Q ss_pred EEEeCCCcEEEEeCCC
Q 016769 365 ASASEDSTVALWELYP 380 (383)
Q Consensus 365 as~s~d~~i~~w~~~~ 380 (383)
|.||.|+.|+||-++.
T Consensus 463 Avgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSA 478 (626)
T ss_pred EEecCCCeEEEEEECC
Confidence 9999999999998753
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=158.65 Aligned_cols=247 Identities=15% Similarity=0.167 Sum_probs=171.1
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..+.++.|+. +|..+++++.|.+++++|..++.... ++....+......
T Consensus 15 ~~i~sl~fs~--~G~~litss~dDsl~LYd~~~g~~~~----ti~skkyG~~~~~------------------------- 63 (311)
T KOG1446|consen 15 GKINSLDFSD--DGLLLITSSEDDSLRLYDSLSGKQVK----TINSKKYGVDLAC------------------------- 63 (311)
T ss_pred CceeEEEecC--CCCEEEEecCCCeEEEEEcCCCceee----EeecccccccEEE-------------------------
Confidence 4578899987 47889999999999999998875321 1111111000000
Q ss_pred ccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEee
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 222 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 222 (383)
+..+....+..+.-.|.+||+=+|.+.+.+..+..+. .++..+. .
T Consensus 64 ----------------------Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~----------~~V~sL~---~ 108 (311)
T KOG1446|consen 64 ----------------------FTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHK----------KRVNSLS---V 108 (311)
T ss_pred ----------------------EecCCceEEEccCCCCCceEEEEeecCceEEEcCCCC----------ceEEEEE---e
Confidence 0011112233333346789999999999888876431 2222221 2
Q ss_pred cCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee
Q 016769 223 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE 302 (383)
Q Consensus 223 ~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~ 302 (383)
.|.+ ..+++++.|++|++||+|.+.+ +..+. ...-...+|||+|..++++...+.|++||++....-......
T Consensus 109 sP~~----d~FlS~S~D~tvrLWDlR~~~c-qg~l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~ 181 (311)
T KOG1446|consen 109 SPKD----DTFLSSSLDKTVRLWDLRVKKC-QGLLN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFS 181 (311)
T ss_pred cCCC----CeEEecccCCeEEeeEecCCCC-ceEEe--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEc
Confidence 3332 2478999999999999997543 33333 223345789999999998888889999999865332222222
Q ss_pred ee-cCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccce---eEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 303 IN-LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC---NAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 303 ~~-~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v---~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
+. ....+.+.+.|+|||++|+.++..+.+++.|.-+|....++..|...- .+..|+||++++.+|+.||+|.+|++
T Consensus 182 i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 182 ITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred cCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 22 234568899999999999999999999999999999888888777543 67789999999999999999999999
Q ss_pred CCCC
Q 016769 379 YPPH 382 (383)
Q Consensus 379 ~~~~ 382 (383)
..++
T Consensus 262 ~tg~ 265 (311)
T KOG1446|consen 262 ETGK 265 (311)
T ss_pred CCCc
Confidence 6543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-22 Score=173.22 Aligned_cols=256 Identities=20% Similarity=0.328 Sum_probs=180.3
Q ss_pred eeecCCceeeEEEeCCCC-eEEEecCCCeEEEeeCccccc----------ccccccccccceeeeeeecCCCCcceeEec
Q 016769 14 LRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRT----------VSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (383)
Q Consensus 14 l~gH~~~V~~v~f~~~~~-~L~sgs~D~~v~vW~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (383)
.--|.+.|+.+.+-|+.. .+||++..+.|.|||.....- -..+.+|.. ...++++.+. ....|+++
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~--eg~glsWn~~-~~g~Lls~ 196 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK--EGYGLSWNRQ-QEGTLLSG 196 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc--cccccccccc-cceeEeec
Confidence 347999999999998765 677888889999999754321 113445543 2455666653 34678999
Q ss_pred ccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCcccee
Q 016769 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEII 162 (383)
Q Consensus 83 ~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (383)
+.|+++++||+....... +..
T Consensus 197 ~~d~~i~lwdi~~~~~~~-~~~---------------------------------------------------------- 217 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKED-KVV---------------------------------------------------------- 217 (422)
T ss_pred cCCCcEEEEeccccccCC-ccc----------------------------------------------------------
Confidence 999999999996432100 000
Q ss_pred cccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcE
Q 016769 163 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 242 (383)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i 242 (383)
.++.+. .+. ...| ..+. |.+.. ...+.+++.|+.+
T Consensus 218 ------~p~~~~-~~h-~~~V--------------------eDV~--------------~h~~h---~~lF~sv~dd~~L 252 (422)
T KOG0264|consen 218 ------DPKTIF-SGH-EDVV--------------------EDVA--------------WHPLH---EDLFGSVGDDGKL 252 (422)
T ss_pred ------cceEEe-ecC-Ccce--------------------ehhh--------------ccccc---hhhheeecCCCeE
Confidence 000000 000 0000 0000 11111 1135678899999
Q ss_pred EEEeCCC-CCCceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC-
Q 016769 243 LVWDIRN-PGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS- 319 (383)
Q Consensus 243 ~~wdl~~-~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~- 319 (383)
.|||+|+ ...+....++|..++.|++|.|... .+|+||.|++|+|||++...... ..+..+...|..+.|+|..
T Consensus 253 ~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l---h~~e~H~dev~~V~WSPh~e 329 (422)
T KOG0264|consen 253 MIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPL---HTFEGHEDEVFQVEWSPHNE 329 (422)
T ss_pred EEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCc---eeccCCCcceEEEEeCCCCC
Confidence 9999996 3445677889999999999988665 46899999999999998755321 2345677889999999976
Q ss_pred cEEEEEeCCCcEEEEEcCC--------------CceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 320 KIAATAGWDRRVRIYNYRK--------------GSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 320 ~~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
..+|+++.|+++.+||+.. .+.+....||...|....|+|... .++|.++|+.+.||++.
T Consensus 330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 5789999999999999954 123467789999999999999888 78999999999999875
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-21 Score=181.18 Aligned_cols=254 Identities=18% Similarity=0.218 Sum_probs=171.8
Q ss_pred ecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccccc-------------ccccccccceeeeeeecCCCCcceeEec
Q 016769 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS-------------SSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (383)
.|-..|+...+++|+..+++++.+.....|+...+..+. .+..| ...+.++.|+|. +++.|+++
T Consensus 18 ~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH--~~~V~~v~fsP~-d~~~LaSg 94 (493)
T PTZ00421 18 RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQ--EGPIIDVAFNPF-DPQKLFTA 94 (493)
T ss_pred cceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCC--CCCEEEEEEcCC-CCCEEEEE
Confidence 455677777888998889999999999999865443221 11222 245788999884 35789999
Q ss_pred ccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCcccee
Q 016769 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEII 162 (383)
Q Consensus 83 ~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (383)
+.|++|++||+.++...... .
T Consensus 95 S~DgtIkIWdi~~~~~~~~~--------------------~--------------------------------------- 115 (493)
T PTZ00421 95 SEDGTIMGWGIPEEGLTQNI--------------------S--------------------------------------- 115 (493)
T ss_pred eCCCEEEEEecCCCcccccc--------------------C---------------------------------------
Confidence 99999999999754210000 0
Q ss_pred cccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcE
Q 016769 163 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 242 (383)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i 242 (383)
.......+ +.+.| .+ ..|.|.. ...+++|+.|++|
T Consensus 116 -------~~l~~L~g-H~~~V-------------------------------~~---l~f~P~~---~~iLaSgs~DgtV 150 (493)
T PTZ00421 116 -------DPIVHLQG-HTKKV-------------------------------GI---VSFHPSA---MNVLASAGADMVV 150 (493)
T ss_pred -------cceEEecC-CCCcE-------------------------------EE---EEeCcCC---CCEEEEEeCCCEE
Confidence 00000000 00000 00 0133321 1247889999999
Q ss_pred EEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC-CeEEEEECCCCcE
Q 016769 243 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP-GISGTSIRPDSKI 321 (383)
Q Consensus 243 ~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~-~i~~~~~~p~~~~ 321 (383)
+|||+++. .....+..|...|.++.|++++..+++++.|+.|++||++... .. ..+..+.+ ....+.|.+++..
T Consensus 151 rIWDl~tg-~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~--~v--~tl~~H~~~~~~~~~w~~~~~~ 225 (493)
T PTZ00421 151 NVWDVERG-KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT--IV--SSVEAHASAKSQRCLWAKRKDL 225 (493)
T ss_pred EEEECCCC-eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc--EE--EEEecCCCCcceEEEEcCCCCe
Confidence 99999874 4566778899999999999999999999999999999997543 22 12333333 2446678888777
Q ss_pred EEEEe----CCCcEEEEEcCCCc-eEEEecccc-cceeEEEEeCCCCEEEEEe-CCCcEEEEeCCCC
Q 016769 322 AATAG----WDRRVRIYNYRKGS-ALAILKYHH-ATCNAVSFSSDCKLMASAS-EDSTVALWELYPP 381 (383)
Q Consensus 322 l~s~~----~dg~i~iwd~~~~~-~~~~~~~h~-~~v~~v~~spd~~~las~s-~d~~i~~w~~~~~ 381 (383)
+++++ .|+.|++||+++.. ++.....+. ..+....|+||+++|++|+ .|+.|++||+...
T Consensus 226 ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 226 IITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 77655 47999999998754 444443333 3456667899999988887 5999999999643
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=151.59 Aligned_cols=255 Identities=18% Similarity=0.215 Sum_probs=172.7
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccc-----cccccccceeeeeee--cCCCCcceeEecc-c
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-----SWVHSAAHGIVSVAT--GPSIGLNKVISQG-R 84 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~l~s~~-~ 84 (383)
+-+-|++.|+|.||+|+|.+|+|||.|.+|++--+....+... +..|. .-+.-++| .+..++..|+++| .
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd--gtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD--GTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecC--CceeeeEEecCCCcCceEEEecCCC
Confidence 4468999999999999999999999999999986654433221 11222 22333333 3444556777764 8
Q ss_pred CCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 85 D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
|..|.+=|+.+|.- ...+..+..|+-.+ .+
T Consensus 162 dc~iy~tdc~~g~~----~~a~sghtghilal----------------------------------------------ys 191 (350)
T KOG0641|consen 162 DCKIYITDCGRGQG----FHALSGHTGHILAL----------------------------------------------YS 191 (350)
T ss_pred cceEEEeecCCCCc----ceeecCCcccEEEE----------------------------------------------EE
Confidence 88999988877631 11111111111000 00
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCcee-eEE--EeecCCCCCCceEEEEEeCCCc
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMC-MAV--QAYLPSKSQGFVNVLAGYEDGS 241 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~sg~~dg~ 241 (383)
. ...++++|++|.+||+|||+-..++..+....+. .++- .++ ...-|+ + ..+++|..|..
T Consensus 192 w----n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~---------~glessavaav~vdps---g-rll~sg~~dss 254 (350)
T KOG0641|consen 192 W----NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD---------GGLESSAVAAVAVDPS---G-RLLASGHADSS 254 (350)
T ss_pred e----cCcEEEccCCCceEEEEeeeccceeeeccCcccC---------CCcccceeEEEEECCC---c-ceeeeccCCCc
Confidence 0 0247889999999999999998888777543221 1111 111 112222 2 35788999999
Q ss_pred EEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcE
Q 016769 242 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 321 (383)
Q Consensus 242 i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 321 (383)
..+||++. +.++..+..|...|+|+.|+|..-++++|+.|..|++-||+..-...+-......+...+..+.|+|..-.
T Consensus 255 c~lydirg-~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~s 333 (350)
T KOG0641|consen 255 CMLYDIRG-GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFS 333 (350)
T ss_pred eEEEEeeC-CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccce
Confidence 99999996 56788888899999999999999999999999999999987432111111112224456778899999988
Q ss_pred EEEEeCCCcEEEEEcC
Q 016769 322 AATAGWDRRVRIYNYR 337 (383)
Q Consensus 322 l~s~~~dg~i~iwd~~ 337 (383)
+++.+.|+++.+|-+.
T Consensus 334 fisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 334 FISSSADKTATLWALN 349 (350)
T ss_pred eeeccCcceEEEeccC
Confidence 9999999999999763
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=170.68 Aligned_cols=251 Identities=24% Similarity=0.354 Sum_probs=189.4
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
.+.+|+||+..|+.+.|+|+...++++|.|..||||.+....+...+..|. ..+..+...|+ +.+|++++.|++.-
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~--~~V~~ls~h~t--geYllsAs~d~~w~ 328 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHE--EPVTGLSLHPT--GEYLLSASNDGTWA 328 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccc--ccceeeeeccC--CcEEEEecCCceEE
Confidence 456899999999999999999999999999999999998877766665554 35677777774 78999999999988
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
.-|++++...
T Consensus 329 Fsd~~~g~~l---------------------------------------------------------------------- 338 (506)
T KOG0289|consen 329 FSDISSGSQL---------------------------------------------------------------------- 338 (506)
T ss_pred EEEccCCcEE----------------------------------------------------------------------
Confidence 8888765310
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
..++.. ...|-+ . ...|.|+. ..+.+|..||.|+|||+.+
T Consensus 339 ---t~vs~~-~s~v~~---------t-----------------------s~~fHpDg----Lifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 339 ---TVVSDE-TSDVEY---------T-----------------------SAAFHPDG----LIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ---EEEeec-ccccee---------E-----------------------EeeEcCCc----eEEeccCCCceEEEEEcCC
Confidence 000000 000000 0 00133321 2356788999999999988
Q ss_pred CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCC
Q 016769 250 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 329 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg 329 (383)
+. ....+.+|..+|..++|+..|-++++++.|+.|++|||+.... ++........++.++.|.+.|+|+++++.|=
T Consensus 379 ~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n---~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 379 QT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN---FKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred cc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc---cceeeccccccceeEEEcCCCCeEEeeccee
Confidence 55 4678889999999999999998899999999999999985431 1111112224699999999999999998887
Q ss_pred cEEEEEcCC--CceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 330 RVRIYNYRK--GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 330 ~i~iwd~~~--~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
+|++++-.+ -..+..+.-|.+....+.|.-.-++++++|.|...+++.+
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 777777533 3456666678888999999988899999999999988865
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-20 Score=178.79 Aligned_cols=258 Identities=18% Similarity=0.189 Sum_probs=160.5
Q ss_pred EecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeee
Q 016769 35 AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFC 114 (383)
Q Consensus 35 sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~ 114 (383)
+|+.++.+++|+......+..+..|. ..+.+++|.|. ++..|+||+.|++|++||+.++..... .+.. ..+
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~--~~V~~lafsP~-~~~lLASgS~DgtIrIWDi~t~~~~~~---~i~~---p~~ 119 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHT--SSILDLQFNPC-FSEILASGSEDLTIRVWEIPHNDESVK---EIKD---PQC 119 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCC--CCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCCcccc---cccc---ceE
Confidence 47788999999986654444444443 46889999984 357899999999999999975421000 0000 000
Q ss_pred eEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCee
Q 016769 115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 194 (383)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~ 194 (383)
.+ ... .. ......+.+.+. .++++++.|++|++||+++++.+
T Consensus 120 --~L-~gH------------------------------~~----~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~ 161 (568)
T PTZ00420 120 --IL-KGH------------------------------KK----KISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRA 161 (568)
T ss_pred --Ee-ecC------------------------------CC----cEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEE
Confidence 00 000 00 000012233333 45556677899999999998866
Q ss_pred eEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEE-----EE
Q 016769 195 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL-----SI 269 (383)
Q Consensus 195 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~-----~~ 269 (383)
..+... ..+.++ .|.++. ..+++++.|+.|+|||+++. ..+..+.+|...+... .|
T Consensus 162 ~~i~~~-----------~~V~Sl---swspdG----~lLat~s~D~~IrIwD~Rsg-~~i~tl~gH~g~~~s~~v~~~~f 222 (568)
T PTZ00420 162 FQINMP-----------KKLSSL---KWNIKG----NLLSGTCVGKHMHIIDPRKQ-EIASSFHIHDGGKNTKNIWIDGL 222 (568)
T ss_pred EEEecC-----------CcEEEE---EECCCC----CEEEEEecCCEEEEEECCCC-cEEEEEecccCCceeEEEEeeeE
Confidence 554321 112222 244432 25777889999999999985 4466788888764332 23
Q ss_pred eCCCCceEEEEcCC----cEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEE--
Q 016769 270 DESCNGGISGGADQ----KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA-- 343 (383)
Q Consensus 270 ~~~~~~~~s~~~d~----~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~-- 343 (383)
.+++..++++|.|+ .|+|||++.... .+....+....+.+......+++.++++|+.|++|++|++..+....
T Consensus 223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREMKLWDLKNTTS-ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred cCCCCEEEEEEcCCCCccEEEEEECCCCCC-ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 46777888888774 699999985332 22222233333333444446678899999999999999997764322
Q ss_pred EecccccceeEEEEeCC
Q 016769 344 ILKYHHATCNAVSFSSD 360 (383)
Q Consensus 344 ~~~~h~~~v~~v~~spd 360 (383)
.+. +..+...++|.|+
T Consensus 302 ~~~-s~~p~~g~~f~Pk 317 (568)
T PTZ00420 302 EYK-SCSPFRSFGFLPK 317 (568)
T ss_pred ccc-cCCCccceEEccc
Confidence 222 5567888999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=165.84 Aligned_cols=240 Identities=27% Similarity=0.426 Sum_probs=171.0
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..+.++.+.+. ++.+++++.|+.+++|+++++.. ......+.. . .
T Consensus 10 ~~i~~~~~~~~--~~~l~~~~~~g~i~i~~~~~~~~----~~~~~~~~~----------~------------i------- 54 (289)
T cd00200 10 GGVTCVAFSPD--GKLLATGSGDGTIKVWDLETGEL----LRTLKGHTG----------P------------V------- 54 (289)
T ss_pred CCEEEEEEcCC--CCEEEEeecCcEEEEEEeeCCCc----EEEEecCCc----------c------------e-------
Confidence 45788888883 67899999999999999976531 000000000 0 0
Q ss_pred ccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEee
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 222 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 222 (383)
....+.+++ +++++ ++.++.+++||+++++.+..+..+ .....++ .+
T Consensus 55 ------------------~~~~~~~~~-~~l~~-~~~~~~i~i~~~~~~~~~~~~~~~----------~~~i~~~---~~ 101 (289)
T cd00200 55 ------------------RDVAASADG-TYLAS-GSSDKTIRLWDLETGECVRTLTGH----------TSYVSSV---AF 101 (289)
T ss_pred ------------------eEEEECCCC-CEEEE-EcCCCeEEEEEcCcccceEEEecc----------CCcEEEE---EE
Confidence 000112233 23444 455789999999887655554321 1112222 23
Q ss_pred cCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee
Q 016769 223 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE 302 (383)
Q Consensus 223 ~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~ 302 (383)
.+. ...+++++.|+.|++||+++. .....+..|..++.++.+++.+..+++++.|+.+++||++...... .
T Consensus 102 ~~~----~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~----~ 172 (289)
T cd00200 102 SPD----GRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA----T 172 (289)
T ss_pred cCC----CCEEEEecCCCeEEEEECCCc-EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce----e
Confidence 332 124566667999999999863 3456677788899999999987766777679999999997433222 2
Q ss_pred eecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 303 INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 303 ~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
...+...+.++.|+|+++.+++++.|+.|++||+..++.+..+..|...+.+++|+|++.++++++.|+.|++||+.
T Consensus 173 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 173 LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred EecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 23455579999999999999999999999999999999888888899999999999998899999999999999985
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-22 Score=171.87 Aligned_cols=245 Identities=16% Similarity=0.261 Sum_probs=176.5
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
..+.+|.|-.++|+++.|.+++..+++.+.|+.+++|++.+.+....+.+|. ..+.++-|.. +...+++|+.|.|+
T Consensus 210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHt--dkVt~ak~~~--~~~~vVsgs~DRti 285 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHT--DKVTAAKFKL--SHSRVVSGSADRTI 285 (459)
T ss_pred hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccc--cceeeehhhc--cccceeeccccchh
Confidence 3566888999999999999999999999999999999999999888887765 3466776665 23458999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
|.||+....|..++... . .|.+ +. +.
T Consensus 286 K~WDl~k~~C~kt~l~~----------------S-----------~cnD-----------------------I~--~~-- 311 (459)
T KOG0288|consen 286 KLWDLQKAYCSKTVLPG----------------S-----------QCND-----------------------IV--CS-- 311 (459)
T ss_pred hhhhhhhhheecccccc----------------c-----------cccc-----------------------eE--ec--
Confidence 99999887654421100 0 0000 00 00
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
...+.+|-.|++||+||.++..+...++.+..+ .++. .. .+...+++++.|.++++.|++
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~v-------------tSl~-ls----~~g~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRV-------------TSLD-LS----MDGLELLSSSRDDTLKVIDLR 371 (459)
T ss_pred --ceeeeecccccceEEEeccCCceeeEeecCcce-------------eeEe-ec----cCCeEEeeecCCCceeeeecc
Confidence 124567778899999999998877666543222 2221 22 223468889999999999999
Q ss_pred CCCCceeeeecc----ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEE
Q 016769 249 NPGIPLTAMKVH----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 324 (383)
Q Consensus 249 ~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s 324 (383)
+... ...+... ......+.|+|++.++++||.||.|+||++... ++............|++++|+|.|.++++
T Consensus 372 t~eI-~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg--KlE~~l~~s~s~~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 372 TKEI-RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG--KLEKVLSLSTSNAAITSLSWNPSGSGLLS 448 (459)
T ss_pred cccE-EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc--eEEEEeccCCCCcceEEEEEcCCCchhhc
Confidence 7543 3333221 124677889999999999999999999998643 33222112222236999999999999999
Q ss_pred EeCCCcEEEE
Q 016769 325 AGWDRRVRIY 334 (383)
Q Consensus 325 ~~~dg~i~iw 334 (383)
++.++.+.+|
T Consensus 449 adk~~~v~lW 458 (459)
T KOG0288|consen 449 ADKQKAVTLW 458 (459)
T ss_pred ccCCcceEec
Confidence 9999999998
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-22 Score=179.71 Aligned_cols=304 Identities=20% Similarity=0.300 Sum_probs=203.1
Q ss_pred CCCC-eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccc--ccccccccccccceeeeeeecCCCCcceeEecc
Q 016769 7 PPDP-VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (383)
Q Consensus 7 ~~~~-~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (383)
|..| .+.++.|++-|+.+..--+++.|+|+|.|.+|++|+...+ -|+..+..|. --+.+++.... +...++|||
T Consensus 61 ~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~--DYVkcla~~ak-~~~lvaSgG 137 (735)
T KOG0308|consen 61 PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK--DYVKCLAYIAK-NNELVASGG 137 (735)
T ss_pred cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhccc--chheeeeeccc-CceeEEecC
Confidence 3444 7789999999999999999999999999999999998766 4555555554 23556665322 357889999
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
.|+.|.+||++++.... ....... ...++. . ++...+.
T Consensus 138 LD~~IflWDin~~~~~l----~~s~n~~--t~~sl~------------------------------s------G~k~siY 175 (735)
T KOG0308|consen 138 LDRKIFLWDINTGTATL----VASFNNV--TVNSLG------------------------------S------GPKDSIY 175 (735)
T ss_pred CCccEEEEEccCcchhh----hhhcccc--ccccCC------------------------------C------CCcccee
Confidence 99999999998763100 0000000 000000 0 0111122
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
++..+....++++|+..+.+|+||-++.+.++++..+ . ..+-++-+ + .+..++++++.||+|+
T Consensus 176 SLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH--------T--dNVr~ll~-----~--dDGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 176 SLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH--------T--DNVRVLLV-----N--DDGTRLLSASSDGTIR 238 (735)
T ss_pred eeecCCcceEEEecCcccceEEeccccccceeeeecc--------c--cceEEEEE-----c--CCCCeEeecCCCceEE
Confidence 2222333357888888899999999999999888742 1 12222111 1 1223689999999999
Q ss_pred EEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEE
Q 016769 244 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 323 (383)
Q Consensus 244 ~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 323 (383)
+||++. ..++.++..|.+.|..+..+++...+++|+.|+.|..=||..++...++- .+...+..+..+...+-+-
T Consensus 239 lWdLgq-QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic----k~daPv~~l~~~~~~~~~W 313 (735)
T KOG0308|consen 239 LWDLGQ-QRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC----KEDAPVLKLHLHEHDNSVW 313 (735)
T ss_pred eeeccc-cceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee----cCCCchhhhhhccccCCce
Confidence 999997 45688899999999999999999999999999999999998754332221 1223455555554444457
Q ss_pred EEeCCCcEEEEEcCCCceE-------------------------EEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 324 TAGWDRRVRIYNYRKGSAL-------------------------AILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 324 s~~~dg~i~iwd~~~~~~~-------------------------~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
++++|+.|+-|-+.-...+ ..+.|- .+|..-++-.|.+++.|-...|.+.+||+
T Consensus 314 vtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg-~ai~k~~mL~dkRhVlTkDa~gnv~lwDI 392 (735)
T KOG0308|consen 314 VTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGG-AAIKKHAMLNDKRHVLTKDAKGNVALWDI 392 (735)
T ss_pred eeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCc-hhhhhhhhhcCcceEeeecCCCCEEEEEe
Confidence 7889999999966321100 011111 11222234457889999999999999997
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-20 Score=171.51 Aligned_cols=339 Identities=18% Similarity=0.310 Sum_probs=202.1
Q ss_pred CCceeeEEEeCCCC-eEEEecCCCeEEEeeCcccccccccc-cccccceeeeeeecCCCCcceeEecccCCeEEEeecCC
Q 016769 18 RASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (383)
Q Consensus 18 ~~~V~~v~f~~~~~-~L~sgs~D~~v~vW~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~ 95 (383)
.+.|++++|.-||+ .|++|+.-|.+-+||++..+...... .|. .++....+.+ +...++|++.|+.+++|=.++
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~--~sv~~~~fl~--~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY--GSVTGATFLP--GEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc--CCcccceecC--CCceEeeccCCCceeEEEeeC
Confidence 59999999999986 78888888999999998776655443 332 3455555655 346788999999999998775
Q ss_pred CCCCC----------CCeeeeec--CceeeeeEEeeccccccccccCCCCccceeccCcccc--cCcccccc-ccCCccc
Q 016769 96 GGLSS----------NPSLTIKT--NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD--TDSLCDSK-ESNRSFE 160 (383)
Q Consensus 96 ~~~~~----------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~ 160 (383)
+.-.. .|...++- .+.+++... -+.+........ ......+.+.... ........ .......
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa-~~Drt~r~fs~~--~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSA-KQDRTLRSFSVI--SESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCcEEEEec-ccCcchhhhhhh--HHHHhHhhcccccccccccccccchhhhcCC
Confidence 43211 01111111 111111100 000000000000 0000000000000 00000000 0000001
Q ss_pred eecccCCCCC-----ceeeeccCCcceEEEEecCCCCe-eeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEE
Q 016769 161 IIDDVPAEGP-----KYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 234 (383)
Q Consensus 161 ~~~~~~~~~~-----~~~~~~g~~~~~i~~Wdl~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (383)
.+..+...+. .-++++--.+..++.|+.++... ...+... .+.. ....+.++. ..+ .| ++.+
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~------~~~~-~~~~~~av~-vs~---CG-NF~~ 464 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK------RFKK-DDINATAVC-VSF---CG-NFVF 464 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc------cccc-cCcceEEEE-Eec---cC-ceEE
Confidence 1111111100 01222333455788899877553 2222210 0111 122333332 111 22 2577
Q ss_pred EEeCCCcEEEEeCCCCCCceeee---eccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEE------------
Q 016769 235 AGYEDGSILVWDIRNPGIPLTAM---KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI------------ 299 (383)
Q Consensus 235 sg~~dg~i~~wdl~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~------------ 299 (383)
.|+..|+|.+|++.++ .....+ +.|..+|..++.|...+.+++++.+|-+++||+....-...+
T Consensus 465 IG~S~G~Id~fNmQSG-i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~h 543 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSG-IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYH 543 (910)
T ss_pred EeccCCeEEEEEcccC-eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeee
Confidence 8999999999999874 434444 579999999999999888999999999999998654310000
Q ss_pred -------------------------eeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeE
Q 016769 300 -------------------------KKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNA 354 (383)
Q Consensus 300 -------------------------~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 354 (383)
..+...+.+.|+.++|||||+.+++++.|++||+||+.++..+-.+. -..++.+
T Consensus 544 r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~s 622 (910)
T KOG1539|consen 544 RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTS 622 (910)
T ss_pred ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCccee
Confidence 01233467889999999999999999999999999999999887663 5678899
Q ss_pred EEEeCCCCEEEEEeCC-CcEEEEe
Q 016769 355 VSFSSDCKLMASASED-STVALWE 377 (383)
Q Consensus 355 v~~spd~~~las~s~d-~~i~~w~ 377 (383)
+.|||+|.+|||+..| .-|++|-
T Consensus 623 ls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 623 LSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eEECCCCCEEEEEEecCceEEEEE
Confidence 9999999999999999 7899994
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-21 Score=154.44 Aligned_cols=244 Identities=15% Similarity=0.234 Sum_probs=174.9
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
.+.+..||--+|..++.+.|...+++|+.|.-|.+||+.+++....+..|. ..+-.+.|.. ....++|||-|.++|
T Consensus 51 liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~--aqVNtV~fNe--esSVv~SgsfD~s~r 126 (307)
T KOG0316|consen 51 LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHL--AQVNTVRFNE--ESSVVASGSFDSSVR 126 (307)
T ss_pred eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccccc--ceeeEEEecC--cceEEEeccccceeE
Confidence 567889999999999999999999999999999999999999888877665 3466677765 346789999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+||+..... .|.+ +
T Consensus 127 ~wDCRS~s~--ePiQ--------------------------------------------------------i-------- 140 (307)
T KOG0316|consen 127 LWDCRSRSF--EPIQ--------------------------------------------------------I-------- 140 (307)
T ss_pred EEEcccCCC--Cccc--------------------------------------------------------h--------
Confidence 999865311 0000 0
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
+. ...|+. ..+ .+ ....+++|+.||++|.||||.
T Consensus 141 ---ld--ea~D~V------------~Si--------------------~v---------~~heIvaGS~DGtvRtydiR~ 174 (307)
T KOG0316|consen 141 ---LD--EAKDGV------------SSI--------------------DV---------AEHEIVAGSVDGTVRTYDIRK 174 (307)
T ss_pred ---hh--hhcCce------------eEE--------------------Ee---------cccEEEeeccCCcEEEEEeec
Confidence 00 000100 000 00 001478899999999999998
Q ss_pred CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCC--eEEEEECCCCcEEEEEeC
Q 016769 250 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG--ISGTSIRPDSKIAATAGW 327 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~--i~~~~~~p~~~~l~s~~~ 327 (383)
+.. .......||++++|+++++..+.++-|.++++-|-+. +..+ +..+.+.+. -...+++.....+++|+.
T Consensus 175 G~l---~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~t--GklL--~sYkGhkn~eykldc~l~qsdthV~sgSE 247 (307)
T KOG0316|consen 175 GTL---SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKET--GKLL--KSYKGHKNMEYKLDCCLNQSDTHVFSGSE 247 (307)
T ss_pred cee---ehhhcCCcceeEEecCCCCEEEEeeccceeeecccch--hHHH--HHhcccccceeeeeeeecccceeEEeccC
Confidence 532 2233456999999999999999999999999987543 2222 122222222 223456666778999999
Q ss_pred CCcEEEEEcCCCceEEEecccccc-eeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 328 DRRVRIYNYRKGSALAILKYHHAT-CNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 328 dg~i~iwd~~~~~~~~~~~~h~~~-v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
||++++||+.....+..+..|... |.+++++|.-..|+++.. +.+.+|-
T Consensus 248 DG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 248 DGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred CceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence 999999999999999888877776 799999997766665543 4456664
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=176.83 Aligned_cols=283 Identities=21% Similarity=0.270 Sum_probs=177.6
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccc--cccccccceeeeeeecCCCCcceeEecccCCeEEE
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~ 90 (383)
-...|...|-.+.+-|....|++.+.|.++|+||+++.++... ..+|. ..+.+++|.+. +...|++||.||.|.|
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~--~SvkS~cf~~~-n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT--GSVKSECFMPT-NPAVFCTGGRDGEILL 171 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc--cccchhhhccC-CCcceeeccCCCcEEE
Confidence 3568999999999999777999999999999999998887654 33443 46788888885 4578899999999999
Q ss_pred eecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCC
Q 016769 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGP 170 (383)
Q Consensus 91 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (383)
||+.-...-.. ..+|. ..+.+..+. ..+.+ . ....-.
T Consensus 172 WD~R~n~~d~~---------e~~~~------------------~~~~~~n~~------ptpsk-------p---~~kr~~ 208 (720)
T KOG0321|consen 172 WDCRCNGVDAL---------EEFDN------------------RIYGRHNTA------PTPSK-------P---LKKRIR 208 (720)
T ss_pred EEEeccchhhH---------HHHhh------------------hhhccccCC------CCCCc-------h---hhcccc
Confidence 99853210000 00000 000000000 00000 0 000000
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeC-CCcEEEEeCCC
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRN 249 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~-dg~i~~wdl~~ 249 (383)
+..+.++. | + .. +.+..|. +...|++++. |+.|+||||++
T Consensus 209 k~kA~s~t----i------------------------~-----ss-vTvv~fk-----De~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 209 KWKAASNT----I------------------------F-----SS-VTVVLFK-----DESTLASAGAADSTIKVWDLRK 249 (720)
T ss_pred ccccccCc----e------------------------e-----ee-eEEEEEe-----ccceeeeccCCCcceEEEeecc
Confidence 11121111 0 0 00 1111121 2235777655 99999999987
Q ss_pred CCCc-----eeeeeccc-----cCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC
Q 016769 250 PGIP-----LTAMKVHL-----EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 319 (383)
Q Consensus 250 ~~~~-----~~~~~~h~-----~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 319 (383)
.... ....+.|+ ..+.++..|..|.++++.+.|++|..|++..................--..-..+|++
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD 329 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC
Confidence 5432 22222232 2467788899999988888899999999875443322211111100001123468999
Q ss_pred cEEEEEeCCCcEEEEEcCCCce-EEEecccccceeEEEEeCCC-CEEEEEeCCCcEEEEeCCC
Q 016769 320 KIAATAGWDRRVRIYNYRKGSA-LAILKYHHATCNAVSFSSDC-KLMASASEDSTVALWELYP 380 (383)
Q Consensus 320 ~~l~s~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~v~~spd~-~~las~s~d~~i~~w~~~~ 380 (383)
.++++|++|...++|.+.+.+. ...+.+|...|.+|+|.|.. --+|++++|..+++|++++
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 9999999999999999987654 44667999999999998743 2567779999999999964
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=162.15 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=82.7
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
..+.|+-||+|.|||+.... ++..-.|..+|..+.|.+ ..++++++.+|.|++||.+.. ..+ .....|...|.
T Consensus 300 L~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG--~l~--~~y~GH~~~Il 372 (399)
T KOG0296|consen 300 LAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG--QLK--FTYTGHQMGIL 372 (399)
T ss_pred hhhcccccceEEEEecccch--hheeccCCCceEEEEEcC-cchheeeccCceEEeeecccc--ceE--EEEecCchhee
Confidence 35678999999999998643 445556889999999988 678999999999999998654 333 34567788999
Q ss_pred EEEECCCCcEEEEEeCCCcEEEEEcC
Q 016769 312 GTSIRPDSKIAATAGWDRRVRIYNYR 337 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~dg~i~iwd~~ 337 (383)
.++++|+.++++++|.|++.++|+..
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999874
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=174.36 Aligned_cols=354 Identities=20% Similarity=0.248 Sum_probs=198.1
Q ss_pred eeeecCCceeeEEEeCCCCeEEEec--CCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccC--CeE
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGT--TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--GTV 88 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs--~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D--~ti 88 (383)
.+..|+.++++|+|+++|++++||= ----+|||++.....+..+..|. ..+.+++|+| ++.++++.|.. =.|
T Consensus 73 lvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHK--Y~vtcvaFsp--~~kyvvSVGsQHDMIV 148 (1080)
T KOG1408|consen 73 LVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHK--YNVTCVAFSP--GNKYVVSVGSQHDMIV 148 (1080)
T ss_pred eecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhcc--ccceeeeecC--CCcEEEeeccccceEE
Confidence 3457889999999999999999976 33469999998877666655554 3578889988 35677776643 356
Q ss_pred EEeecCCCCCCC-CC---e---eeeec--------CceeeeeEEee--cccccc-------ccc-----------cCCCC
Q 016769 89 KCWDIENGGLSS-NP---S---LTIKT--------NSYHFCKLSLV--KEPYAN-------AKQ-----------ANEPK 133 (383)
Q Consensus 89 ~~Wd~~~~~~~~-~~---~---~~~~~--------~~~~~~~~~~~--~~~~~~-------~~~-----------~~~~~ 133 (383)
.+||+..+-... +. . ..+.. ...|.-.+.+- ++.... ... +.+..
T Consensus 149 nv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~g 228 (1080)
T KOG1408|consen 149 NVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVG 228 (1080)
T ss_pred EhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCc
Confidence 677664321000 00 0 00000 00111111111 000000 000 00000
Q ss_pred ----cccee-ccCcccccCc--cccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcC-C--
Q 016769 134 ----DCYER-EVGETVDTDS--LCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSC-G-- 203 (383)
Q Consensus 134 ----~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~-~-- 203 (383)
.++.+ ..|.+..++. +.+....-+. .....+.. ..+++ ..|..++.|||++.++-..+.+++.... .
T Consensus 229 icAestfait~qGhLvEFSsRRLLDKWVqcRT-TnAnCIcV-s~r~I-~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d 305 (1080)
T KOG1408|consen 229 ICAESTFAITAQGHLVEFSSRRLLDKWVQCRT-TNANCICV-SSRLI-ACGCAKGMVRLFNPETLDYAGTLPRSHALGSD 305 (1080)
T ss_pred ccccceEEEecccceeeechhhhhhhhhhhhc-cccceeee-ecceE-EEeeccceeeecCcchhhhccccccccccccc
Confidence 00111 1111111100 0000000000 00000111 12344 4567789999999888766666653211 1
Q ss_pred -CC-----CCcCC-CCC--ceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCce--eeeeccccCeEEEEEeC-
Q 016769 204 -GS-----PNFSS-KGR--GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL--TAMKVHLEPVLCLSIDE- 271 (383)
Q Consensus 204 -~s-----~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~--~~~~~h~~~v~~~~~~~- 271 (383)
++ ..++. ... .-+++++ |-+. ...+..-+.|..+.+||++....+- ..+-.|...|..+..-|
T Consensus 306 ~a~~~q~~~~~s~~~~a~fPD~IA~~-Fdet----~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~ 380 (1080)
T KOG1408|consen 306 TANLSQPEPKNSESSPAIFPDAIACQ-FDET----TDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPC 380 (1080)
T ss_pred hhhcccccccccccCcccCCceeEEE-ecCC----CceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccc
Confidence 00 00100 000 1122222 3221 1245556899999999998754432 33445666665554322
Q ss_pred -----CC-----CceEEEEcCCcEEEEEccCCCCeeE-----Ee-------------------------ee---eecCCC
Q 016769 272 -----SC-----NGGISGGADQKIVLYNLDHSTGSCV-----IK-------------------------KE---INLERP 308 (383)
Q Consensus 272 -----~~-----~~~~s~~~d~~i~~wdl~~~~~~~~-----~~-------------------------~~---~~~~~~ 308 (383)
.. ..+.+|+.|++|++||++.-+.... +. +. ..-...
T Consensus 381 nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~ 460 (1080)
T KOG1408|consen 381 NVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRF 460 (1080)
T ss_pred cccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCccc
Confidence 11 1358999999999999975221111 00 00 001224
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeC---CCCEEEEEeCCCcEEEEeC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS---DCKLMASASEDSTVALWEL 378 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp---d~~~las~s~d~~i~~w~~ 378 (383)
++.+++++|++++||+|..-|+++++|+...+....+.+|+..|.|+.||- ..++||++|+|.-|+++|+
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV 533 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence 689999999999999999999999999998888888899999999999984 2469999999999999997
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.2e-22 Score=170.97 Aligned_cols=250 Identities=16% Similarity=0.184 Sum_probs=168.0
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
..++|.||..+|..|.||||.++|++++.|..+++||+.++.+..... ++.+-.+.++++.| ++..+++|+.|+++.
T Consensus 261 l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 261 LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-SGLGFSVSSCAWCP--DGFRFVTGSPDRTII 337 (519)
T ss_pred eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc-cCcCCCcceeEEcc--CCceeEecCCCCcEE
Confidence 567999999999999999999999999999999999999887655432 22234567888888 478899999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
.||.+.... . .+ .-+..+. ++ -.++..+|
T Consensus 338 ~wdlDgn~~-~---------~W-----~gvr~~~-----------v~-------------------------dlait~Dg 366 (519)
T KOG0293|consen 338 MWDLDGNIL-G---------NW-----EGVRDPK-----------VH-------------------------DLAITYDG 366 (519)
T ss_pred EecCCcchh-h---------cc-----cccccce-----------eE-------------------------EEEEcCCC
Confidence 999865421 0 00 0000000 00 01123455
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
+. ++.++ .|..|++++.++......+..+. .++. +..++ +...+++.-.+..|.+||++.
T Consensus 367 k~-vl~v~-~d~~i~l~~~e~~~dr~lise~~-----------~its-----~~iS~--d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 367 KY-VLLVT-VDKKIRLYNREARVDRGLISEEQ-----------PITS-----FSISK--DGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred cE-EEEEe-cccceeeechhhhhhhccccccC-----------ceeE-----EEEcC--CCcEEEEEcccCeeEEeecch
Confidence 54 44443 46789999987755432222111 1111 21122 223566777899999999985
Q ss_pred CCCceeeeeccccCe--EEEEEeCCC-CceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC-cEEEEE
Q 016769 250 PGIPLTAMKVHLEPV--LCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KIAATA 325 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v--~~~~~~~~~-~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~l~s~ 325 (383)
. .......+|...- ..-+|.... ..+++|+.|+.|+||+.... . ....+..|...+++++++|.. .++|+|
T Consensus 427 ~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg--k--ll~~LsGHs~~vNcVswNP~~p~m~ASa 501 (519)
T KOG0293|consen 427 N-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG--K--LLAVLSGHSKTVNCVSWNPADPEMFASA 501 (519)
T ss_pred h-hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC--c--eeEeecCCcceeeEEecCCCCHHHhhcc
Confidence 4 3345566775432 222343332 45789999999999987533 2 234567787889999999965 589999
Q ss_pred eCCCcEEEEEcCC
Q 016769 326 GWDRRVRIYNYRK 338 (383)
Q Consensus 326 ~~dg~i~iwd~~~ 338 (383)
|.||+||||-...
T Consensus 502 sDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 502 SDDGTIRIWGPSD 514 (519)
T ss_pred CCCCeEEEecCCc
Confidence 9999999998754
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=167.11 Aligned_cols=242 Identities=20% Similarity=0.324 Sum_probs=167.1
Q ss_pred ecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCC
Q 016769 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~ 95 (383)
--++.|++++|-.||++|+.|.+.|.|+|+|..+...+..+..|. +.+-.+-|+|. ++..|++|++|+.+++||+.+
T Consensus 66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~--apv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQ--APVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhcc--CceeEEEeccc-CCeEEEecCCCceEEEEEcCC
Confidence 446788999999999999999999999999965533344444454 34667778874 457788999999999999987
Q ss_pred CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeee
Q 016769 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAV 175 (383)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (383)
... . ..+.. ....++ + .++.+. ..-+++
T Consensus 143 a~v------~----------~~l~~-htDYVR------------------------------~----g~~~~~-~~hivv 170 (487)
T KOG0310|consen 143 AYV------Q----------AELSG-HTDYVR------------------------------C----GDISPA-NDHIVV 170 (487)
T ss_pred cEE------E----------EEecC-CcceeE------------------------------e----eccccC-CCeEEE
Confidence 531 0 01100 000000 0 011111 123678
Q ss_pred ccCCcceEEEEecCCC-CeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCce
Q 016769 176 AGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 254 (383)
Q Consensus 176 ~g~~~~~i~~Wdl~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~ 254 (383)
+|+-|++||+||++.. ..+..+..+..+++ ..+.|+.. .+++++ ...|++||+.++++.+
T Consensus 171 tGsYDg~vrl~DtR~~~~~v~elnhg~pVe~--------------vl~lpsgs----~iasAg-Gn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSRVVELNHGCPVES--------------VLALPSGS----LIASAG-GNSVKVWDLTTGGQLL 231 (487)
T ss_pred ecCCCceEEEEEeccCCceeEEecCCCceee--------------EEEcCCCC----EEEEcC-CCeEEEEEecCCceeh
Confidence 8999999999999887 45555543222111 12344321 344443 5689999999877666
Q ss_pred eeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEE
Q 016769 255 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 334 (383)
Q Consensus 255 ~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iw 334 (383)
..+..|+..|+|+.+..++..|++++-|+.+++||+.+.. ....++. .++|-+++++|+++.++.|-.||.+.+=
T Consensus 232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K----vv~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK----VVHSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred hhhhcccceEEEEEeecCCceEeecccccceEEEEccceE----EEEeeec-ccceeeEEecCCCceEEEecccceeeee
Confidence 6666699999999998888899999999999999975432 2222332 3679999999999999999999988765
Q ss_pred Ec
Q 016769 335 NY 336 (383)
Q Consensus 335 d~ 336 (383)
+.
T Consensus 307 r~ 308 (487)
T KOG0310|consen 307 RR 308 (487)
T ss_pred hh
Confidence 44
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-20 Score=175.35 Aligned_cols=246 Identities=18% Similarity=0.278 Sum_probs=180.2
Q ss_pred eecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccc-ccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeec
Q 016769 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (383)
Q Consensus 15 ~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~ 93 (383)
.+|+..-+.|||.|+|..|.|++.||.||+|+.... .....+..+ ...+.+++.. .++|++++.+++|.++.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~--g~~v~~ia~~----s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDIS--GELVSSIACY----SNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhcc--CceeEEEeec----ccceEEeeccceEEEeeC
Confidence 489999999999999999999999999999997655 333332211 1234444433 468999999999999998
Q ss_pred CCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCcee
Q 016769 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYM 173 (383)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (383)
.+++.-+. ..++.+ + -+.+
T Consensus 84 ps~~~~~i-----------L~Rftl---p-----------------------------------------------~r~~ 102 (933)
T KOG1274|consen 84 PSGEEDTI-----------LARFTL---P-----------------------------------------------IRDL 102 (933)
T ss_pred CCCCccce-----------eeeeec---c-----------------------------------------------ceEE
Confidence 76642100 000000 0 0011
Q ss_pred eeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCc
Q 016769 174 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 253 (383)
Q Consensus 174 ~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~ 253 (383)
++.|+ ...++.|+.|-.|++-++.....
T Consensus 103 ~v~g~---------------------------------------------------g~~iaagsdD~~vK~~~~~D~s~- 130 (933)
T KOG1274|consen 103 AVSGS---------------------------------------------------GKMIAAGSDDTAVKLLNLDDSSQ- 130 (933)
T ss_pred EEecC---------------------------------------------------CcEEEeecCceeEEEEeccccch-
Confidence 11111 11356678888888888766443
Q ss_pred eeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee---cC-CCCeEEEEECCCCcEEEEEeCCC
Q 016769 254 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN---LE-RPGISGTSIRPDSKIAATAGWDR 329 (383)
Q Consensus 254 ~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~---~~-~~~i~~~~~~p~~~~l~s~~~dg 329 (383)
...+.+|.++|.++.++|.+..+++.+.||.+++||++++.....+....+ .. ...++.++|+|++..++..+.|+
T Consensus 131 ~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~ 210 (933)
T KOG1274|consen 131 EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN 210 (933)
T ss_pred heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC
Confidence 567889999999999999999999999999999999987655444432221 12 23466789999999999999999
Q ss_pred cEEEEEcCCCceEEEecc--cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 330 RVRIYNYRKGSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 330 ~i~iwd~~~~~~~~~~~~--h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.|++|+.........++. |...+.++.|+|.|+|||+++.||.|.|||..
T Consensus 211 ~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 211 TVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred eEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 999999998888776653 44458999999999999999999999999985
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=156.90 Aligned_cols=244 Identities=20% Similarity=0.335 Sum_probs=157.0
Q ss_pred cceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccC
Q 016769 62 AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG 141 (383)
Q Consensus 62 ~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (383)
.-.|.+++|+|. ....++.+|+|++||+|++++..... +. . .......+...
T Consensus 27 ~DsIS~l~FSP~-~~~~~~A~SWD~tVR~wevq~~g~~~-~k-----a------------------~~~~~~PvL~v--- 78 (347)
T KOG0647|consen 27 EDSISALAFSPQ-ADNLLAAGSWDGTVRIWEVQNSGQLV-PK-----A------------------QQSHDGPVLDV--- 78 (347)
T ss_pred ccchheeEeccc-cCceEEecccCCceEEEEEecCCccc-ch-----h------------------hhccCCCeEEE---
Confidence 345778999994 34566689999999999998642110 00 0 00000000110
Q ss_pred cccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEe
Q 016769 142 ETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221 (383)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 221 (383)
..+.+|.+ +.+|+-|+.+++|||.+++. .++..+. +.+-++.
T Consensus 79 ----------------------~Wsddgsk--Vf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd----------~pvkt~~--- 120 (347)
T KOG0647|consen 79 ----------------------CWSDDGSK--VFSGGCDKQAKLWDLASGQV-SQVAAHD----------APVKTCH--- 120 (347)
T ss_pred ----------------------EEccCCce--EEeeccCCceEEEEccCCCe-eeeeecc----------cceeEEE---
Confidence 11234433 23455689999999999863 3333211 1111111
Q ss_pred ecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEee
Q 016769 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK 301 (383)
Q Consensus 222 ~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~ 301 (383)
+.+.. ....|++|+.|++||+||+|+. .++.+++.. +.+.++ |-....++.+..++.|.+|+|+.+... ++.
T Consensus 121 wv~~~--~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~LP-eRvYa~--Dv~~pm~vVata~r~i~vynL~n~~te--~k~ 192 (347)
T KOG0647|consen 121 WVPGM--NYQCLVTGSWDKTLKFWDTRSS-NPVATLQLP-ERVYAA--DVLYPMAVVATAERHIAVYNLENPPTE--FKR 192 (347)
T ss_pred EecCC--CcceeEecccccceeecccCCC-Ceeeeeecc-ceeeeh--hccCceeEEEecCCcEEEEEcCCCcch--hhh
Confidence 22111 1235889999999999999974 456555542 344444 444455678889999999999654321 111
Q ss_pred eeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCC--ceEEEeccccc---------ceeEEEEeCCCCEEEEEeCC
Q 016769 302 EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG--SALAILKYHHA---------TCNAVSFSSDCKLMASASED 370 (383)
Q Consensus 302 ~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~h~~---------~v~~v~~spd~~~las~s~d 370 (383)
....-...+++++..+|....|.|+-+|++.|..++.+ +.-.+++.|.. .|++|+|+|.-..|+|++.|
T Consensus 193 ~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD 272 (347)
T KOG0647|consen 193 IESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSD 272 (347)
T ss_pred hcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCC
Confidence 11122346889998888887899999999999999886 33346677763 57899999988899999999
Q ss_pred CcEEEEeCC
Q 016769 371 STVALWELY 379 (383)
Q Consensus 371 ~~i~~w~~~ 379 (383)
|+..+||-.
T Consensus 273 Gtf~FWDkd 281 (347)
T KOG0647|consen 273 GTFSFWDKD 281 (347)
T ss_pred ceEEEecch
Confidence 999999863
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-20 Score=169.23 Aligned_cols=299 Identities=18% Similarity=0.254 Sum_probs=197.3
Q ss_pred CeeeeeecCCceeeEEEeCCCC---eEEEecCCCeEEEeeCcccc--cccccccccccceeeeeeecCCCCcceeEec-c
Q 016769 10 PVAVLRGHRASVTDVCFHQTKP---ILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-G 83 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~---~L~sgs~D~~v~vW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~ 83 (383)
.+.++.||..+|+|+++-|..+ +++||+.|++|++|.+.... ++..+.. +...++++.. ...+.++ +
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g----~~~~~~cv~a---~~~~~~~~~ 118 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG----HCKECVCVVA---RSSVMTCKA 118 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC----cceeEEEEEe---eeeEEEeec
Confidence 4568899999999999998876 89999999999999987332 2323222 3344444443 2333443 7
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
.|+++.+||.+..+. .... ....+...... .| .
T Consensus 119 ad~~v~vw~~~~~e~-----~~~~--------~~rf~~k~~ip-------Lc---------------------------L 151 (764)
T KOG1063|consen 119 ADGTVSVWDKQQDEV-----FLLA--------VLRFEIKEAIP-------LC---------------------------L 151 (764)
T ss_pred cCceEEEeecCCCce-----eeeh--------heehhhhhHhh-------HH---------------------------H
Confidence 999999999854431 0000 00000000000 00 0
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCC--eeeEeccCc-CCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNS-CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 240 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~--~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg 240 (383)
+..++.+.++.+.|+.+..|.++.-.+++ .+..+..+. .+.+..|...+. +...++++++|.
T Consensus 152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~---------------~~~~laS~SQD~ 216 (764)
T KOG1063|consen 152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG---------------DDLLLASSSQDR 216 (764)
T ss_pred hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC---------------CcEEEEecCCce
Confidence 01123345677777777788887665443 233343322 222333322111 123578999999
Q ss_pred cEEEEeCCCCC--------------------Cce----------eeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEc
Q 016769 241 SILVWDIRNPG--------------------IPL----------TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 290 (383)
Q Consensus 241 ~i~~wdl~~~~--------------------~~~----------~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl 290 (383)
.||||.+.-.. ... ..+.+|.+.|.++.|.|.+..+++++.|+++.+|.-
T Consensus 217 yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~p 296 (764)
T KOG1063|consen 217 YIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKP 296 (764)
T ss_pred EEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEec
Confidence 99999873211 011 124589999999999999988999999999999987
Q ss_pred cCCCCeeEEeeee---ecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCC---ceEEEecccccceeEEEEeCCCCEE
Q 016769 291 DHSTGSCVIKKEI---NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG---SALAILKYHHATCNAVSFSSDCKLM 364 (383)
Q Consensus 291 ~~~~~~~~~~~~~---~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~v~~spd~~~l 364 (383)
+..++...-...+ .....+..+.-|+|++..+++-+.-|-.++|-.... .+...+.||.+.|.+|+|+|.|++|
T Consensus 297 d~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGefl 376 (764)
T KOG1063|consen 297 DENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFL 376 (764)
T ss_pred CCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEE
Confidence 6665544333222 222345778889999999999999999999983322 2345678999999999999999999
Q ss_pred EEEeCCCcEEEEe
Q 016769 365 ASASEDSTVALWE 377 (383)
Q Consensus 365 as~s~d~~i~~w~ 377 (383)
.|.|.|.+-|+|-
T Consensus 377 Lsvs~DQTTRlFa 389 (764)
T KOG1063|consen 377 LSVSLDQTTRLFA 389 (764)
T ss_pred EEeccccceeeec
Confidence 9999999999974
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-20 Score=154.66 Aligned_cols=260 Identities=18% Similarity=0.271 Sum_probs=160.6
Q ss_pred eecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccc----cccccccccccceeeeeeecCCCCcceeEecccCCeEEE
Q 016769 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (383)
Q Consensus 15 ~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~ 90 (383)
.+|.+-|.++.|.+.|+.+||||.|++|+|||..... +....+.|. ..+..+.+-+..-|..+++++.|+|++|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~--~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD--GSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecC--CcEEEEEecCccccceEEEEecCCceee
Confidence 4899999999999999999999999999999964332 222222333 3566666654334688999999999999
Q ss_pred eecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCC
Q 016769 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGP 170 (383)
Q Consensus 91 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (383)
|.=+... ...+..++....... ..+..++++. +.+.-.
T Consensus 88 WEE~~~~--------~~~~~~~Wv~~ttl~---------DsrssV~DV~-------------------------FaP~hl 125 (361)
T KOG2445|consen 88 WEEQEKS--------EEAHGRRWVRRTTLV---------DSRSSVTDVK-------------------------FAPKHL 125 (361)
T ss_pred eeecccc--------cccccceeEEEEEee---------cCCcceeEEE-------------------------ecchhc
Confidence 9732110 000000010000000 0000000000 000000
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCC
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 250 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~ 250 (383)
... +++++.||.||||+.=.+
T Consensus 126 GLk-----------------------------------------------------------lA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 126 GLK-----------------------------------------------------------LAAASADGILRIYEAPDP 146 (361)
T ss_pred ceE-----------------------------------------------------------EEEeccCcEEEEEecCCc
Confidence 112 334445555555543211
Q ss_pred CC-----ceeee-------eccccCeEEEEEeCCCC---ceEEEEcC-----CcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 251 GI-----PLTAM-------KVHLEPVLCLSIDESCN---GGISGGAD-----QKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 251 ~~-----~~~~~-------~~h~~~v~~~~~~~~~~---~~~s~~~d-----~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
.. .+..+ ..+..+..|++|+++.. .++.|+.+ +.++||..+....+.....++..+...|
T Consensus 147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI 226 (361)
T KOG2445|consen 147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI 226 (361)
T ss_pred cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcc
Confidence 00 00111 12445667888875543 23444433 3789998776554554444555667789
Q ss_pred EEEEECCCC----cEEEEEeCCCcEEEEEcCCC--------------------ceEEEecccccceeEEEEeCCCCEEEE
Q 016769 311 SGTSIRPDS----KIAATAGWDRRVRIYNYRKG--------------------SALAILKYHHATCNAVSFSSDCKLMAS 366 (383)
Q Consensus 311 ~~~~~~p~~----~~l~s~~~dg~i~iwd~~~~--------------------~~~~~~~~h~~~v~~v~~spd~~~las 366 (383)
+.++|.|+- ..||+++.|| |+||.+... +.+..+.+|...|+.+.|+--|-+|+|
T Consensus 227 ~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS 305 (361)
T KOG2445|consen 227 RDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS 305 (361)
T ss_pred eeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee
Confidence 999999974 4799999999 999999631 234567889999999999999999999
Q ss_pred EeCCCcEEEEeC
Q 016769 367 ASEDSTVALWEL 378 (383)
Q Consensus 367 ~s~d~~i~~w~~ 378 (383)
.|.||+||+|..
T Consensus 306 tGdDG~VRLWka 317 (361)
T KOG2445|consen 306 TGDDGCVRLWKA 317 (361)
T ss_pred cCCCceeeehhh
Confidence 999999999965
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-20 Score=173.86 Aligned_cols=183 Identities=16% Similarity=0.217 Sum_probs=138.6
Q ss_pred ccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC---
Q 016769 176 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--- 252 (383)
Q Consensus 176 ~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~--- 252 (383)
+|+..+.+++|++.+...+..+.. +.+.+.++ .|.|.. ...+++|+.|++|++||+.+...
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~g----------H~~~V~~l---afsP~~---~~lLASgS~DgtIrIWDi~t~~~~~~ 112 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKG----------HTSSILDL---QFNPCF---SEILASGSEDLTIRVWEIPHNDESVK 112 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcC----------CCCCEEEE---EEcCCC---CCEEEEEeCCCeEEEEECCCCCcccc
Confidence 466678999999877655555542 12233333 244431 12588999999999999975421
Q ss_pred ----ceeeeeccccCeEEEEEeCCCCce-EEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC
Q 016769 253 ----PLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 327 (383)
Q Consensus 253 ----~~~~~~~h~~~v~~~~~~~~~~~~-~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~ 327 (383)
++..+.+|...|.++.|+|.+..+ ++++.|+.|++||+........ +. +...+.+++|+|+|++|++++.
T Consensus 113 ~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~----i~-~~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 113 EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ----IN-MPKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE----Ee-cCCcEEEEEECCCCCEEEEEec
Confidence 344677899999999999988754 6889999999999976542221 22 2357999999999999999999
Q ss_pred CCcEEEEEcCCCceEEEeccccccee-----EEEEeCCCCEEEEEeCCC----cEEEEeCC
Q 016769 328 DRRVRIYNYRKGSALAILKYHHATCN-----AVSFSSDCKLMASASEDS----TVALWELY 379 (383)
Q Consensus 328 dg~i~iwd~~~~~~~~~~~~h~~~v~-----~v~~spd~~~las~s~d~----~i~~w~~~ 379 (383)
|++|+|||+++++.+..+.+|.+.+. ...|+|++++|++++.|+ .|+|||+.
T Consensus 188 D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 188 GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 99999999999999989999987543 334678999999988775 79999986
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=167.55 Aligned_cols=260 Identities=20% Similarity=0.285 Sum_probs=166.8
Q ss_pred eeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcc
Q 016769 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET 143 (383)
Q Consensus 64 ~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (383)
.|.++++.|+ |.+|+|||.|-+|++||++.-.. .++ ++..+. + |
T Consensus 169 ~Vsal~~Dp~--GaR~~sGs~Dy~v~~wDf~gMda------s~~----~fr~l~--------------P--~-------- 212 (641)
T KOG0772|consen 169 IVSALAVDPS--GARFVSGSLDYTVKFWDFQGMDA------SMR----SFRQLQ--------------P--C-------- 212 (641)
T ss_pred EEEEeeecCC--CceeeeccccceEEEEecccccc------cch----hhhccC--------------c--c--------
Confidence 4667788874 78999999999999999964321 000 000000 0 0
Q ss_pred cccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeec
Q 016769 144 VDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL 223 (383)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 223 (383)
..+...+...++.+..+|+++|+. ..+|.|-.-......+..+.+...+.- +++.+.-+....+.
T Consensus 213 ------------E~h~i~sl~ys~Tg~~iLvvsg~a--qakl~DRdG~~~~e~~KGDQYI~Dm~n-TKGHia~lt~g~wh 277 (641)
T KOG0772|consen 213 ------------ETHQINSLQYSVTGDQILVVSGSA--QAKLLDRDGFEIVEFSKGDQYIRDMYN-TKGHIAELTCGCWH 277 (641)
T ss_pred ------------cccccceeeecCCCCeEEEEecCc--ceeEEccCCceeeeeeccchhhhhhhc-cCCceeeeeccccc
Confidence 001111223456667788888764 688888544333333444333332221 23333222333466
Q ss_pred CCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeec-----cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeE
Q 016769 224 PSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-----HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV 298 (383)
Q Consensus 224 ~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~ 298 (383)
|.+.+ .+++++.||++|+||+.+...-+.+++. ..-++...+|++++..+++|+.||.|.+|+....+....
T Consensus 278 P~~k~---~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~ 354 (641)
T KOG0772|consen 278 PDNKE---EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV 354 (641)
T ss_pred cCccc---ceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc
Confidence 65433 5789999999999999876544444442 234788899999999999999999999999865443322
Q ss_pred EeeeeecCC--CCeEEEEECCCCcEEEEEeCCCcEEEEEcCCC-ceEEEeccc--ccceeEEEEeCCCCEEEEEeC----
Q 016769 299 IKKEINLER--PGISGTSIRPDSKIAATAGWDRRVRIYNYRKG-SALAILKYH--HATCNAVSFSSDCKLMASASE---- 369 (383)
Q Consensus 299 ~~~~~~~~~--~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h--~~~v~~v~~spd~~~las~s~---- 369 (383)
. .....|. ..|++++|++||++|++=+.|+++++||++.. +++....+- ..+-..++||||.+++++|..
T Consensus 355 ~-~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 355 M-KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNG 433 (641)
T ss_pred e-EeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCC
Confidence 2 1122333 48999999999999999999999999999764 444433332 224466789999999998753
Q ss_pred --CCcEEEEeC
Q 016769 370 --DSTVALWEL 378 (383)
Q Consensus 370 --d~~i~~w~~ 378 (383)
-+++.+||-
T Consensus 434 ~~~g~L~f~d~ 444 (641)
T KOG0772|consen 434 MTAGTLFFFDR 444 (641)
T ss_pred CCCceEEEEec
Confidence 345666654
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=148.48 Aligned_cols=190 Identities=17% Similarity=0.320 Sum_probs=146.5
Q ss_pred eeeccCCcceEEEEecCCCCe-eeE--eccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAER-CTR--LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~-~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
++++++.|+.||+|++..+.. .++ +.. . ++ +..+ . .++.|.. ..|++++.|.++-||.-..
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~-~--------hk-rsVR-s-vAwsp~g----~~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDD-G--------HK-RSVR-S-VAWSPHG----RYLASASFDATVVIWKKED 92 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEeccc-c--------ch-heee-e-eeecCCC----cEEEEeeccceEEEeecCC
Confidence 567778899999999974332 111 211 0 11 1111 1 1344442 3688999999999997443
Q ss_pred C-CCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC
Q 016769 250 P-GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 328 (383)
Q Consensus 250 ~-~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d 328 (383)
. ..++.++.+|...|.+++|++++.+|++|+.|+.+=+|.++... .......+..|...|..+.|+|....|+++|+|
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYD 171 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYD 171 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-cEEEEeeeccccccccEEEEcCCcceeEEeccC
Confidence 2 24678899999999999999999999999999999999987433 222233455677789999999999999999999
Q ss_pred CcEEEEEcCC---CceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 329 RRVRIYNYRK---GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 329 g~i~iwd~~~---~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.+|++|+-.. -....++.+|...|++++|+|.|..|++++.|++|+||.++
T Consensus 172 nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 172 NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred CeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 9999998763 35678899999999999999999999999999999999854
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-19 Score=157.85 Aligned_cols=272 Identities=14% Similarity=0.102 Sum_probs=168.7
Q ss_pred CCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCccee-EecccCCeEEEeecCCCCCCCCCeeeeec
Q 016769 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (383)
Q Consensus 30 ~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~ 108 (383)
+++++|++.|+.|++||..+++.+..+..+. .+..+.++++ +..+ ++++.|+++++||..+++... .+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~~~~~----~~~~ 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKD--GKLLYVCASDSDTIQVIDLATGEVIG----TLPS 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCC--CCEEEEEECCCCeEEEEECCCCcEEE----eccC
Confidence 3578899999999999998777655543222 2445777773 4555 677889999999987653210 0000
Q ss_pred CceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEec
Q 016769 109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDL 188 (383)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl 188 (383)
.. . .....+.++++ .+++++..++.+++||+
T Consensus 72 -------------~~-------~----------------------------~~~~~~~~~g~-~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 72 -------------GP-------D----------------------------PELFALHPNGK-ILYIANEDDNLVTVIDI 102 (300)
T ss_pred -------------CC-------C----------------------------ccEEEECCCCC-EEEEEcCCCCeEEEEEC
Confidence 00 0 00011234443 45555566789999999
Q ss_pred CCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC-cEEEEeCCCCCCceeeeeccccCeEEE
Q 016769 189 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDIRNPGIPLTAMKVHLEPVLCL 267 (383)
Q Consensus 189 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg-~i~~wdl~~~~~~~~~~~~h~~~v~~~ 267 (383)
++.+.+..+..... . . .+ .+.|+. ..++++..++ .+.+||.++.. ....+.. ......+
T Consensus 103 ~~~~~~~~~~~~~~-------~--~--~~---~~~~dg----~~l~~~~~~~~~~~~~d~~~~~-~~~~~~~-~~~~~~~ 162 (300)
T TIGR03866 103 ETRKVLAEIPVGVE-------P--E--GM---AVSPDG----KIVVNTSETTNMAHFIDTKTYE-IVDNVLV-DQRPRFA 162 (300)
T ss_pred CCCeEEeEeeCCCC-------c--c--eE---EECCCC----CEEEEEecCCCeEEEEeCCCCe-EEEEEEc-CCCccEE
Confidence 98776655532110 0 0 11 233322 2355565554 56778987632 2222222 2345678
Q ss_pred EEeCCCCceEE-EEcCCcEEEEEccCCCCeeEEeeeeec---CCCCeEEEEECCCCcEEEE-EeCCCcEEEEEcCCCceE
Q 016769 268 SIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINL---ERPGISGTSIRPDSKIAAT-AGWDRRVRIYNYRKGSAL 342 (383)
Q Consensus 268 ~~~~~~~~~~s-~~~d~~i~~wdl~~~~~~~~~~~~~~~---~~~~i~~~~~~p~~~~l~s-~~~dg~i~iwd~~~~~~~ 342 (383)
.|++++..++. +..++.|.+||++.......+...... .......++|+|++++++. .+.++++.+||+.+++..
T Consensus 163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 163 EFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL 242 (300)
T ss_pred EECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 89998887754 446999999999754321111111000 1112346889999997544 456778999999988877
Q ss_pred EEecccccceeEEEEeCCCCEEEEE-eCCCcEEEEeCCC
Q 016769 343 AILKYHHATCNAVSFSSDCKLMASA-SEDSTVALWELYP 380 (383)
Q Consensus 343 ~~~~~h~~~v~~v~~spd~~~las~-s~d~~i~~w~~~~ 380 (383)
..+. +...+.+++|+|+|++|+++ +.++.|++||+..
T Consensus 243 ~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 243 DYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred EEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 6553 45578999999999998876 5699999999864
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-20 Score=163.40 Aligned_cols=244 Identities=17% Similarity=0.258 Sum_probs=162.3
Q ss_pred eecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecC
Q 016769 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (383)
Q Consensus 15 ~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~ 94 (383)
++|...|.+++.++||++|+||+.|..|.||+..+.+.+..+.+|. ..|.+++|-. +.+.+++++.|.++++|+++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr--~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHR--GAVSSLAFRK--GTSELYSASADRSVKVWSID 274 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccc--cceeeeeeec--CccceeeeecCCceEEEehh
Confidence 5999999999999999999999999999999999888877766665 3467777765 45789999999999999997
Q ss_pred CCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceee
Q 016769 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMA 174 (383)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (383)
...... +++. |. ..+.+++.-+..-++
T Consensus 275 ~~s~ve----tlyG---Hq----------------------------------------------d~v~~IdaL~reR~v 301 (479)
T KOG0299|consen 275 QLSYVE----TLYG---HQ----------------------------------------------DGVLGIDALSRERCV 301 (479)
T ss_pred HhHHHH----HHhC---Cc----------------------------------------------cceeeechhcccceE
Confidence 532110 0000 00 000111111122356
Q ss_pred eccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCce
Q 016769 175 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 254 (383)
Q Consensus 175 ~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~ 254 (383)
.+|+.|+++|+|++....++..... .+..-|.+ |+.+ .++++|+.||.|.+|++-+.. |+
T Consensus 302 tVGgrDrT~rlwKi~eesqlifrg~-----------~~sidcv~---~In~-----~HfvsGSdnG~IaLWs~~KKk-pl 361 (479)
T KOG0299|consen 302 TVGGRDRTVRLWKIPEESQLIFRGG-----------EGSIDCVA---FIND-----EHFVSGSDNGSIALWSLLKKK-PL 361 (479)
T ss_pred EeccccceeEEEeccccceeeeeCC-----------CCCeeeEE---Eecc-----cceeeccCCceEEEeeecccC-ce
Confidence 6777899999999965554433221 12223333 3322 268999999999999987643 33
Q ss_pred eee-ecc-----------ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEE
Q 016769 255 TAM-KVH-----------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA 322 (383)
Q Consensus 255 ~~~-~~h-----------~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 322 (383)
.+. ..| ...|++++.-+..+.+++|+.+|.+++|-+...-....+...+. -.+-|++++|+++|+.+
T Consensus 362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~i 440 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRI 440 (479)
T ss_pred eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEE
Confidence 222 122 12678888888888899999999999999876533222222222 22458999999999954
Q ss_pred EE-EeCCCcEEEEEc
Q 016769 323 AT-AGWDRRVRIYNY 336 (383)
Q Consensus 323 ~s-~~~dg~i~iwd~ 336 (383)
++ .+...++--|-.
T Consensus 441 vagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 441 VAGIGKEHRLGRWWC 455 (479)
T ss_pred EEecccccccceeeE
Confidence 44 445555544433
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-20 Score=161.79 Aligned_cols=287 Identities=22% Similarity=0.346 Sum_probs=191.2
Q ss_pred CCceeeEEEeCCCCeEEEecCCCeEEEeeCcccc--cccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCC
Q 016769 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~ 95 (383)
.+.|++|.|||..++|++++.|++++++.+.... .+..+ |...-.+.+..|.|. +...++++|....+..||+++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~--~l~~fPi~~a~f~p~-G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI--HLEKFPIQKAEFAPN-GHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee--eeccCccceeeecCC-CceEEEecccceEEEEeeccc
Confidence 5799999999999999999999999999986543 23332 222234677788884 334788999999999999988
Q ss_pred CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeee
Q 016769 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAV 175 (383)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (383)
.+.... +.++.. + ....+.|.+ ++++ ++++.
T Consensus 290 ak~~k~------------------~~~~g~-------------e-------------~~~~e~FeV----Shd~-~fia~ 320 (514)
T KOG2055|consen 290 AKVTKL------------------KPPYGV-------------E-------------EKSMERFEV----SHDS-NFIAI 320 (514)
T ss_pred cccccc------------------cCCCCc-------------c-------------cchhheeEe----cCCC-CeEEE
Confidence 753210 001100 0 000011111 2333 36666
Q ss_pred ccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCcee
Q 016769 176 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 255 (383)
Q Consensus 176 ~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~ 255 (383)
.|. .|.|.|=-..+++.+..+..+..+.... |. +.+ ..+++++.+|.|.+||+++..+ +.
T Consensus 321 ~G~-~G~I~lLhakT~eli~s~KieG~v~~~~--------------fs---Sds-k~l~~~~~~GeV~v~nl~~~~~-~~ 380 (514)
T KOG2055|consen 321 AGN-NGHIHLLHAKTKELITSFKIEGVVSDFT--------------FS---SDS-KELLASGGTGEVYVWNLRQNSC-LH 380 (514)
T ss_pred ccc-CceEEeehhhhhhhhheeeeccEEeeEE--------------Ee---cCC-cEEEEEcCCceEEEEecCCcce-EE
Confidence 654 5788887777777777776543222111 22 122 3577778899999999998643 44
Q ss_pred eeeccccCe--EEEEEeCCCCceEEEEcCCcEEEEEccCC---CCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC--C
Q 016769 256 AMKVHLEPV--LCLSIDESCNGGISGGADQKIVLYNLDHS---TGSCVIKKEINLERPGISGTSIRPDSKIAATAGW--D 328 (383)
Q Consensus 256 ~~~~h~~~v--~~~~~~~~~~~~~s~~~d~~i~~wdl~~~---~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~--d 328 (383)
.+.. .+.| ..++.+..+.++++|+..|-|.|||.++- +.+.-+ +.+..-...|+.+.|+||.+.||.+|. +
T Consensus 381 rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPi-k~~dNLtt~Itsl~Fn~d~qiLAiaS~~~k 458 (514)
T KOG2055|consen 381 RFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPI-KTVDNLTTAITSLQFNHDAQILAIASRVKK 458 (514)
T ss_pred EEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCch-hhhhhhheeeeeeeeCcchhhhhhhhhccc
Confidence 3332 2233 44555677788999999999999996531 100000 111122346899999999998887774 6
Q ss_pred CcEEEEEcCCCceEEEec---ccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 329 RRVRIYNYRKGSALAILK---YHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 329 g~i~iwd~~~~~~~~~~~---~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
..+|+-.+.+......+. .--..|.|++|||.+.+||.|..+|.|.+|.+
T Consensus 459 nalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 459 NALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred cceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 789999988776665443 23456899999999999999999999999987
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-20 Score=172.66 Aligned_cols=284 Identities=20% Similarity=0.308 Sum_probs=186.7
Q ss_pred CCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccc---ccc--ceeeeeeecCCCCcceeEecccCCeEEEee
Q 016769 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH---SAA--HGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd 92 (383)
....++|+..++-..|+.+|.. .++|+.............. ... ..+.-+.++ .+..+.+++++..|.|.+||
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhhhheeecCCCcEEEEe
Confidence 3556677888888777766544 5777775432111111000 000 112233444 34567889999999999999
Q ss_pred cCCCCCCCCCeeee---ecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 93 IENGGLSSNPSLTI---KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 93 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+... ++++.... +..+.+ + .++....
T Consensus 117 lnk~--~rnk~l~~f~EH~Rs~~----------------------~---------------------------ldfh~te 145 (839)
T KOG0269|consen 117 LNKS--IRNKLLTVFNEHERSAN----------------------K---------------------------LDFHSTE 145 (839)
T ss_pred cCcc--ccchhhhHhhhhcccee----------------------e---------------------------eeeccCC
Confidence 9753 11111100 000000 0 0111111
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCc-CCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS-CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
..++++|++|++|++||++..+...+...++ .+..+ .|.|.. + ..++++++.|.+++||||
T Consensus 146 -p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV--------------~fsp~~--~-~~F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 146 -PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV--------------KFSPGY--G-NKFASIHDSGYLQLWDLR 207 (839)
T ss_pred -ccEEEecCCCceEEEEeeecccccccccccchhhhce--------------eeccCC--C-ceEEEecCCceEEEeecc
Confidence 2467889999999999999877554443321 11111 244432 1 247789999999999999
Q ss_pred CCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEE-EEEe-
Q 016769 249 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA-ATAG- 326 (383)
Q Consensus 249 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l-~s~~- 326 (383)
.+..+...+..|+++|.|+.++|....+++||.|+.|+|||+.......+.. +. ....+..+.|.|..++. |+++
T Consensus 208 qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t--In-Tiapv~rVkWRP~~~~hLAtcsm 284 (839)
T KOG0269|consen 208 QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT--IN-TIAPVGRVKWRPARSYHLATCSM 284 (839)
T ss_pred CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE--Ee-ecceeeeeeeccCccchhhhhhc
Confidence 9988888889999999999999998899999999999999997543322221 11 23568899999998764 4333
Q ss_pred -CCCcEEEEEcCCCc-eEEEecccccceeEEEEeC-CCCEEEEEeCCCcEEE
Q 016769 327 -WDRRVRIYNYRKGS-ALAILKYHHATCNAVSFSS-DCKLMASASEDSTVAL 375 (383)
Q Consensus 327 -~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~sp-d~~~las~s~d~~i~~ 375 (383)
.|-.|+|||++.+. +..++..|..-+..++|-. |-..|-++|.|++|..
T Consensus 285 v~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 285 VVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred cccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 48899999998765 4567888999999999943 4558899999998743
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-19 Score=157.25 Aligned_cols=301 Identities=17% Similarity=0.257 Sum_probs=189.3
Q ss_pred CeeeeeecCCceeeEEEeCCC--CeEEEecCCCeEEEeeCccccc-c-cccccccccceeeeeeecCCCCcceeEecccC
Q 016769 10 PVAVLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQHRT-V-SSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~--~~L~sgs~D~~v~vW~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
+..+.+-|.+.|++++|||-. +++|+|..-|+|=+||+..... . .....+.+...|-++.|.|. +..++++.|.|
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~-n~s~i~ssSyD 256 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA-NTSQIYSSSYD 256 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC-ChhheeeeccC
Confidence 345677899999999999965 5899999999999999942221 1 11222334456788899985 45789999999
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
||||+-|++++.... .........-+ . ..++
T Consensus 257 GtiR~~D~~~~i~e~--v~s~~~d~~~f----------------------------------------------s-~~d~ 287 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEE--VLSLDTDNIWF----------------------------------------------S-SLDF 287 (498)
T ss_pred ceeeeeeecchhhHH--HhhcCccceee----------------------------------------------e-eccc
Confidence 999999998652100 00000000000 0 0111
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCe-eeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEE
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~ 244 (383)
+.+.+ .+ +.+++-|...+||++++.. ...+.. ++.++-.++ +.|.. ...+++++.|++++|
T Consensus 288 ~~e~~-~v-l~~~~~G~f~~iD~R~~~s~~~~~~l----------h~kKI~sv~---~NP~~---p~~laT~s~D~T~kI 349 (498)
T KOG4328|consen 288 SAESR-SV-LFGDNVGNFNVIDLRTDGSEYENLRL----------HKKKITSVA---LNPVC---PWFLATASLDQTAKI 349 (498)
T ss_pred cCCCc-cE-EEeecccceEEEEeecCCccchhhhh----------hhcccceee---cCCCC---chheeecccCcceee
Confidence 22222 12 2344456889999988663 222211 111221222 22221 225889999999999
Q ss_pred EeCCCC---CCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEcc----CCCCeeEEeeeeecCC-CCeEEEEEC
Q 016769 245 WDIRNP---GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD----HSTGSCVIKKEINLER-PGISGTSIR 316 (383)
Q Consensus 245 wdl~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~----~~~~~~~~~~~~~~~~-~~i~~~~~~ 316 (383)
||+|+- ..|+...-.|..+|.+..|+|++..+++.+.|..|+|||-. .....+.+...-.... -......|.
T Consensus 350 WD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~ 429 (498)
T KOG4328|consen 350 WDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWD 429 (498)
T ss_pred eehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeC
Confidence 999752 11333344689999999999999999999999999999973 1111111111000000 023456799
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCceEEEec-ccccceeEE-EEeCCCC-EEEEEeCCCcEEEEeC
Q 016769 317 PDSKIAATAGWDRRVRIYNYRKGSALAILK-YHHATCNAV-SFSSDCK-LMASASEDSTVALWEL 378 (383)
Q Consensus 317 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v-~~spd~~-~las~s~d~~i~~w~~ 378 (383)
|+..+|++|-.-+.|-+||-..++.+..+- .....|.++ +|+|-+. ++|-++.-|.|.||.-
T Consensus 430 P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 430 PDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred CCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 999999999999999999998777564432 222344444 7999887 6666777888888853
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-19 Score=171.73 Aligned_cols=303 Identities=21% Similarity=0.351 Sum_probs=195.3
Q ss_pred eeeEEEeCCCCeEEEecCCCeEEEeeCccccccccccccc-ccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCC
Q 016769 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (383)
Q Consensus 21 V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~ 99 (383)
=..+.|+|-.+.++++.+-..|+|||.+.++++.....+. ....+..+.+....+...+++++.||.||||+--...-
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~- 1145 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW- 1145 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc-
Confidence 3457899999999998888899999998888765443222 23456677776655567889999999999998421100
Q ss_pred CCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCC
Q 016769 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQ 179 (383)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 179 (383)
.++.+. + .+........ . .+..+ ...+.. .....+.++|+
T Consensus 1146 ~~~eLV--T------aw~~Ls~~~~---~--------~r~~~------~v~dWq--------------Q~~G~Ll~tGd- 1185 (1387)
T KOG1517|consen 1146 KKPELV--T------AWSSLSDQLP---G--------ARGTG------LVVDWQ--------------QQSGHLLVTGD- 1185 (1387)
T ss_pred CCceeE--E------eeccccccCc---c--------CCCCC------eeeehh--------------hhCCeEEecCC-
Confidence 011100 0 0000000000 0 00000 000000 01134666665
Q ss_pred cceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC--ceeee
Q 016769 180 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAM 257 (383)
Q Consensus 180 ~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~--~~~~~ 257 (383)
.+.|||||.+..+.+..++-.. ..... .+..+...+ ..+++|..||.|++||.|.... .+...
T Consensus 1186 ~r~IRIWDa~~E~~~~diP~~s-----------~t~vT---aLS~~~~~g-n~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGS-----------STLVT---ALSADLVHG-NIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred eeEEEEEecccceeEeecccCC-----------Cccce---eecccccCC-ceEEEeecCCceEEeecccCCccccceee
Confidence 6899999999988776664321 00111 122222222 2578899999999999987543 45566
Q ss_pred eccccC--eEEEEEeCCCCc-eEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC-CeEEEEECCCCcEEEEEeCCCcEEE
Q 016769 258 KVHLEP--VLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSCVIKKEINLERP-GISGTSIRPDSKIAATAGWDRRVRI 333 (383)
Q Consensus 258 ~~h~~~--v~~~~~~~~~~~-~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~-~i~~~~~~p~~~~l~s~~~dg~i~i 333 (383)
+.|+.. |..+.+.+.+.. +++|+.||.|++||++.......+.-....+.+ ..+++.+|+....+|+|+. +.|+|
T Consensus 1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKI 1329 (1387)
T ss_pred cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEE
Confidence 778876 999999876665 899999999999999864221111111111112 3899999999999999998 99999
Q ss_pred EEcCCCceEEEeccc-------ccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 334 YNYRKGSALAILKYH-------HATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 334 wd~~~~~~~~~~~~h-------~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
|++. |+.+..++.+ ...+.|++|||---+||.|+.|.+|.||.-.++
T Consensus 1330 y~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1330 YSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred EecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 9994 4444444332 235699999998889999999999999987655
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-19 Score=147.71 Aligned_cols=256 Identities=19% Similarity=0.251 Sum_probs=160.7
Q ss_pred eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEe-----cccC
Q 016769 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-----QGRD 85 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-----~~~D 85 (383)
+.+++||++.|+|+..+.+.+.|+|||+|.+++|||+++++++...... ..+..+.|+. ++++++. -+.-
T Consensus 45 lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~---~~Vk~~~F~~--~gn~~l~~tD~~mg~~ 119 (327)
T KOG0643|consen 45 LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN---SPVKRVDFSF--GGNLILASTDKQMGYT 119 (327)
T ss_pred eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC---CeeEEEeecc--CCcEEEEEehhhcCcc
Confidence 4578999999999999999999999999999999999999988775432 3567778887 4555443 2455
Q ss_pred CeEEEeecCCCCC---CCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCcccee
Q 016769 86 GTVKCWDIENGGL---SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEII 162 (383)
Q Consensus 86 ~ti~~Wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (383)
+.|.++|++.... ...|...+.... + . ...
T Consensus 120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~--------------------s--k-------------------------it~ 152 (327)
T KOG0643|consen 120 CFVSVFDIRDDSSDIDSEEPYLKIPTPD--------------------S--K-------------------------ITS 152 (327)
T ss_pred eEEEEEEccCChhhhcccCceEEecCCc--------------------c--c-------------------------eee
Confidence 7788888864321 000111110000 0 0 000
Q ss_pred cccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcE
Q 016769 163 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 242 (383)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i 242 (383)
...++-+ +++ ++|..++.|..||+++++.+..-.+. +...-.-+ .+.+ +...+++++.|.+-
T Consensus 153 a~Wg~l~-~~i-i~Ghe~G~is~~da~~g~~~v~s~~~-------h~~~Ind~-----q~s~----d~T~FiT~s~Dtta 214 (327)
T KOG0643|consen 153 ALWGPLG-ETI-IAGHEDGSISIYDARTGKELVDSDEE-------HSSKINDL-----QFSR----DRTYFITGSKDTTA 214 (327)
T ss_pred eeecccC-CEE-EEecCCCcEEEEEcccCceeeechhh-------hccccccc-----cccC----CcceEEecccCccc
Confidence 0011112 344 45677899999999998754332211 11110111 1222 23368899999999
Q ss_pred EEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEe----------eeeecCCCCeEE
Q 016769 243 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK----------KEINLERPGISG 312 (383)
Q Consensus 243 ~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~----------~~~~~~~~~i~~ 312 (383)
++||.++- ..++++. ...||++.++.|..+.++.||....--+=......++...+ ...+.|-+.|++
T Consensus 215 kl~D~~tl-~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINs 292 (327)
T KOG0643|consen 215 KLVDVRTL-EVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINS 292 (327)
T ss_pred eeeeccce-eeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcce
Confidence 99998862 2333332 34699999999988877666544333222222222211110 123456678999
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYRK 338 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~~ 338 (383)
++|+|+|+..++|+.||.||+.-.+.
T Consensus 293 vAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eEECCCCcccccCCCCceEEEEEecc
Confidence 99999999999999999999976543
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-19 Score=171.58 Aligned_cols=269 Identities=19% Similarity=0.234 Sum_probs=182.3
Q ss_pred eeeecC-CceeeEEEeCCCCeEEEec--CCCeEEEeeCcccc-------c-cc-cc-ccccccceeeeeeecCCCCccee
Q 016769 13 VLRGHR-ASVTDVCFHQTKPILFAGT--TGGELRIWDTVQHR-------T-VS-SS-WVHSAAHGIVSVATGPSIGLNKV 79 (383)
Q Consensus 13 ~l~gH~-~~V~~v~f~~~~~~L~sgs--~D~~v~vW~~~~~~-------~-~~-~~-~~~~~~~~~~~~~~~~~~~~~~l 79 (383)
.+-+|. ..|.+|..||||..++||+ .|+.+++|+...-- . +. .+ ....+-..+-|+.|++ ++.+|
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~--dG~~l 84 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP--DGSYL 84 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC--CCCeE
Confidence 345665 6789999999999999999 99999999853210 0 00 00 0112234678888998 57999
Q ss_pred EecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCcc
Q 016769 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSF 159 (383)
Q Consensus 80 ~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (383)
++||.|..|.+|...... ....
T Consensus 85 AsGSDD~~v~iW~~~~~~--~~~~-------------------------------------------------------- 106 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIG--SGTV-------------------------------------------------------- 106 (942)
T ss_pred eeccCcceEEEeeecccC--Cccc--------------------------------------------------------
Confidence 999999999999875310 0000
Q ss_pred ceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCc-CCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeC
Q 016769 160 EIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS-CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 238 (383)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~ 238 (383)
|... |.. ..+.=| ++...+..+. .+..+ .+.|+. ..+++++.
T Consensus 107 -----fgs~--------g~~-~~vE~w-----k~~~~l~~H~~DV~Dv--------------~Wsp~~----~~lvS~s~ 149 (942)
T KOG0973|consen 107 -----FGST--------GGA-KNVESW-----KVVSILRGHDSDVLDV--------------NWSPDD----SLLVSVSL 149 (942)
T ss_pred -----cccc--------ccc-ccccee-----eEEEEEecCCCcccee--------------ccCCCc----cEEEEecc
Confidence 0000 000 000001 1111111100 00000 133321 25889999
Q ss_pred CCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCC------------------------
Q 016769 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST------------------------ 294 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~------------------------ 294 (383)
|++|.+||.++. ..++.+.+|...|..++|||.++++++-+.|++|++|...+-+
T Consensus 150 DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS 228 (942)
T KOG0973|consen 150 DNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS 228 (942)
T ss_pred cceEEEEccccc-eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence 999999999886 6688999999999999999999999999999999999954311
Q ss_pred --CeeEE----------------------eeeeecCCCCeEEEEECCC-----Cc------------EEEEEeCCCcEEE
Q 016769 295 --GSCVI----------------------KKEINLERPGISGTSIRPD-----SK------------IAATAGWDRRVRI 333 (383)
Q Consensus 295 --~~~~~----------------------~~~~~~~~~~i~~~~~~p~-----~~------------~l~s~~~dg~i~i 333 (383)
+.++. ...+-.|...+.+++|+|- .+ .+|+|+.|++|.|
T Consensus 229 PDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV 308 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV 308 (942)
T ss_pred CCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence 00000 0123346677889999861 11 6899999999999
Q ss_pred EEcCCCceEEEecc-cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 334 YNYRKGSALAILKY-HHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 334 wd~~~~~~~~~~~~-h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
|.....+++..... -...|..++|+|||..|..+|.||+|.+..+.
T Consensus 309 W~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 309 WNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred EecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 99988888754432 34679999999999999999999999999874
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-20 Score=159.62 Aligned_cols=250 Identities=16% Similarity=0.264 Sum_probs=170.0
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
...+|+.|.+.|+.|+++. ..++|+|.|.+|+.|-.... ....+... ..+..+.... .++.++|+|.+ |.
T Consensus 101 ~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~tilg~---s~~~gIdh~~--~~~~FaTcGe~--i~ 170 (433)
T KOG0268|consen 101 CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTILGK---SVYLGIDHHR--KNSVFATCGEQ--ID 170 (433)
T ss_pred hhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceeeecc---cccccccccc--ccccccccCce--ee
Confidence 4568999999999999987 67999999999999997642 22222111 1122232222 34678888875 89
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
|||.+.. +|...+.-+ ..... ...+.+..
T Consensus 171 IWD~~R~----~Pv~smswG---~Dti~--------------------------------------------svkfNpvE 199 (433)
T KOG0268|consen 171 IWDEQRD----NPVSSMSWG---ADSIS--------------------------------------------SVKFNPVE 199 (433)
T ss_pred ecccccC----CccceeecC---CCcee--------------------------------------------EEecCCCc
Confidence 9998643 222211110 00000 00011111
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
+ .+++++..|+.|-|+|+++...+.++..... .... .+.|+ .+ ++++|.+|..+..||++.
T Consensus 200 T-sILas~~sDrsIvLyD~R~~~Pl~KVi~~mR---------TN~I-----swnPe---af-nF~~a~ED~nlY~~DmR~ 260 (433)
T KOG0268|consen 200 T-SILASCASDRSIVLYDLRQASPLKKVILTMR---------TNTI-----CWNPE---AF-NFVAANEDHNLYTYDMRN 260 (433)
T ss_pred c-hheeeeccCCceEEEecccCCccceeeeecc---------ccce-----ecCcc---cc-ceeeccccccceehhhhh
Confidence 2 2445555688999999999988766643211 1111 24442 22 467899999999999998
Q ss_pred CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCC
Q 016769 250 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 329 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg 329 (383)
-..++...+.|..+|..+.|+|.|+.+++||.|.+|+||..+....+-.. .......|.++.|+-|.+|++|||.|+
T Consensus 261 l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY---htkRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 261 LSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY---HTKRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred hcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh---hHhhhheeeEEEEeccccEEEecCCCc
Confidence 78888889999999999999999999999999999999998754322111 111234699999999999999999999
Q ss_pred cEEEEEcCCCceE
Q 016769 330 RVRIYNYRKGSAL 342 (383)
Q Consensus 330 ~i~iwd~~~~~~~ 342 (383)
.||+|.....+.+
T Consensus 338 nvRlWka~Asekl 350 (433)
T KOG0268|consen 338 NVRLWKAKASEKL 350 (433)
T ss_pred ceeeeecchhhhc
Confidence 9999988654443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=159.49 Aligned_cols=199 Identities=19% Similarity=0.268 Sum_probs=142.2
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccCcCCCC--CCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS--PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
..+++++...+.+.|||..+............+.- ..+...+.+++ +. .+....+++|+.|++|++||+.
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~gls-----Wn---~~~~g~Lls~~~d~~i~lwdi~ 208 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLS-----WN---RQQEGTLLSGSDDHTICLWDIN 208 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccc-----cc---cccceeEeeccCCCcEEEEecc
Confidence 34566677778999999866432111100000000 01111122222 11 1223479999999999999996
Q ss_pred CCC------CceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC-c
Q 016769 249 NPG------IPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-K 320 (383)
Q Consensus 249 ~~~------~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~ 320 (383)
... .+...+.+|...|..++|++... .+.+++.|+.+.|||++..+. ......+.+...+++++|+|-+ .
T Consensus 209 ~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~--~~~~~~~ah~~~vn~~~fnp~~~~ 286 (422)
T KOG0264|consen 209 AESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS--KPSHSVKAHSAEVNCVAFNPFNEF 286 (422)
T ss_pred ccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC--CCcccccccCCceeEEEeCCCCCc
Confidence 532 24566789999999999977654 467899999999999985211 1123456678899999999865 5
Q ss_pred EEEEEeCCCcEEEEEcCCC-ceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 321 IAATAGWDRRVRIYNYRKG-SALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 321 ~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
.||+||.|++|++||++.. +++.++.+|...|..|.|||... .|||++.|+.+.+||+.
T Consensus 287 ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 287 ILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred eEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 7888889999999999874 56788999999999999999876 89999999999999985
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-19 Score=157.92 Aligned_cols=283 Identities=17% Similarity=0.277 Sum_probs=195.9
Q ss_pred eecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccc---cccccccccccceeeeeeecCCCCcceeEecccCCeEEEe
Q 016769 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (383)
Q Consensus 15 ~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~W 91 (383)
..|-+-|.+++.+...+.++||+.. -|+|||+.... .+..+..-....-+.++-+.+ +++.|++||.-.|+.||
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkg-cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVGGEASTLSIW 492 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCC-eEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEeccccceeeee
Confidence 3799999999999999999998765 57999986432 122222212222344555566 57899999999999999
Q ss_pred ecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCc
Q 016769 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPK 171 (383)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (383)
|+..+.. .++ .... ...-.|+... .+++.+
T Consensus 493 DLAapTp------rik-------------aelt-----ssapaCyALa-------------------------~spDak- 522 (705)
T KOG0639|consen 493 DLAAPTP------RIK-------------AELT-----SSAPACYALA-------------------------ISPDAK- 522 (705)
T ss_pred eccCCCc------chh-------------hhcC-----Ccchhhhhhh-------------------------cCCccc-
Confidence 9976521 110 0000 0001122111 122222
Q ss_pred eeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC
Q 016769 172 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~ 251 (383)
.++ +...||.|+||||.+...+.+++.+..+ .-|+.+ .. +...+-+|+-|.+||-||++...
T Consensus 523 vcF-sccsdGnI~vwDLhnq~~VrqfqGhtDG----------ascIdi---s~----dGtklWTGGlDntvRcWDlregr 584 (705)
T KOG0639|consen 523 VCF-SCCSDGNIAVWDLHNQTLVRQFQGHTDG----------ASCIDI---SK----DGTKLWTGGLDNTVRCWDLREGR 584 (705)
T ss_pred eee-eeccCCcEEEEEcccceeeecccCCCCC----------ceeEEe---cC----CCceeecCCCccceeehhhhhhh
Confidence 222 2345789999999998888887653211 122222 11 12257899999999999999854
Q ss_pred Cceeeeecc--ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCC
Q 016769 252 IPLTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 329 (383)
Q Consensus 252 ~~~~~~~~h--~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg 329 (383)
.+ +.| ...|.++...|.+..++.|=..+.+.+-...... +..+..+.+-|-++.|.+.|+.+++.+.|.
T Consensus 585 ql----qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-----kyqlhlheScVLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 585 QL----QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-----KYQLHLHESCVLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred hh----hhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc-----ceeecccccEEEEEEecccCceeeecCchh
Confidence 32 233 4578889999999999999888877776554332 223445666789999999999999999999
Q ss_pred cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 330 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 330 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
-+..|....|..+...+ ....|.+..+|.|.++++|||.|....+|.+
T Consensus 656 lLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 656 LLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred hhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999998876553 5568999999999999999999999988875
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-19 Score=164.04 Aligned_cols=179 Identities=21% Similarity=0.298 Sum_probs=141.1
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCC
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 250 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~ 250 (383)
+..++.|+.|..+.+|.+.+..++..+..+ +..+.|.+. . + ...+++|++|.++++|-+.+
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH----------~snVC~ls~-----~--~-~~~~iSgSWD~TakvW~~~~- 131 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGH----------KSNVCSLSI-----G--E-DGTLISGSWDSTAKVWRIGE- 131 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhcc----------ccceeeeec-----C--C-cCceEecccccceEEecchh-
Confidence 445677888999999999888877666532 223333221 1 1 12389999999999997654
Q ss_pred CCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCc
Q 016769 251 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 330 (383)
Q Consensus 251 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~ 330 (383)
+...+++|+.+|..+..-+.. .+++|+.|.+|++|.-+ + ..+.+..|..-|+++++-+++. |+|++.||.
T Consensus 132 --l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~--~----~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~ 201 (745)
T KOG0301|consen 132 --LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG--T----LLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS 201 (745)
T ss_pred --hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC--c----hhhhhccchhheeeeEEecCCC-eEeecCCce
Confidence 344589999999999887776 67999999999999532 1 1234566778899999997764 688999999
Q ss_pred EEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 331 VRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 331 i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
|++|++ +++.+..+-+|++.|.+++..+++..++|+++|+++++|+..
T Consensus 202 Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 202 IRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 999999 788898999999999999977888899999999999999863
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.1e-19 Score=155.38 Aligned_cols=238 Identities=16% Similarity=0.216 Sum_probs=167.5
Q ss_pred CCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCC
Q 016769 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~ 97 (383)
.++|.|++-+|+|.+|+.|...|.+.+|.+.+++.+..+..|- ..+.++.|+. ++..++|||.||.|.+|.+-+-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY--Q~ITcL~fs~--dgs~iiTgskDg~V~vW~l~~l- 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY--QSITCLKFSD--DGSHIITGSKDGAVLVWLLTDL- 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc--cceeEEEEeC--CCcEEEecCCCccEEEEEEEee-
Confidence 4679999999999999999899999999999999887765554 4688999986 5799999999999999997321
Q ss_pred CCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeecc
Q 016769 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAG 177 (383)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 177 (383)
+..... ...+.+..-
T Consensus 156 ---------------------v~a~~~-------------------------------------------~~~~p~~~f- 170 (476)
T KOG0646|consen 156 ---------------------VSADND-------------------------------------------HSVKPLHIF- 170 (476)
T ss_pred ---------------------cccccC-------------------------------------------CCccceeee-
Confidence 000000 000000000
Q ss_pred CCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeee
Q 016769 178 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 257 (383)
Q Consensus 178 ~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~ 257 (383)
++.++-|-|+.-+ + .....++++.+.|.++|+||+..+ ..+.++
T Consensus 171 -~~HtlsITDl~ig------------------------------~----Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti 214 (476)
T KOG0646|consen 171 -SDHTLSITDLQIG------------------------------S----GGTNARLYTASEDRTIKLWDLSLG-VLLLTI 214 (476)
T ss_pred -ccCcceeEEEEec------------------------------C----CCccceEEEecCCceEEEEEeccc-eeeEEE
Confidence 0112222221100 0 001126889999999999999874 334333
Q ss_pred eccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCee------------EEeeeeecCCC--CeEEEEECCCCcEEE
Q 016769 258 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC------------VIKKEINLERP--GISGTSIRPDSKIAA 323 (383)
Q Consensus 258 ~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~------------~~~~~~~~~~~--~i~~~~~~p~~~~l~ 323 (383)
. .-.++.++.+||....++.|+.+|.|.+.++..-.+.. ........+.+ .|++++++-||..++
T Consensus 215 ~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 215 T-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred e-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 3 23578899999999999999999999988775432111 11112334444 899999999999999
Q ss_pred EEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCC
Q 016769 324 TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK 362 (383)
Q Consensus 324 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~ 362 (383)
+|+.||++.|||+.+.+.++++....++|+-+.+.|--+
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 999999999999999988888766678888888866433
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-19 Score=145.36 Aligned_cols=253 Identities=19% Similarity=0.255 Sum_probs=168.5
Q ss_pred eeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccc---ccccccccccccceeeeeeec-CCCCcceeEecccCCeEE
Q 016769 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATG-PSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 14 l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~s~~~D~ti~ 89 (383)
-.+|.+.|-.+...=-|+.|||+|.|++|||+.+.+. +.+..+.+|. ..+..+++- |. .++.|+|++.|+.|-
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~--GPVwqv~wahPk-~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHS--GPVWKVAWAHPK-FGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCC--CCeeEEeecccc-cCcEeeEeecCceEE
Confidence 4588999888777777999999999999999998654 3455666665 345555554 33 468999999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
||.-+++.-.... .+..|
T Consensus 84 iWke~~g~w~k~~-----e~~~h--------------------------------------------------------- 101 (299)
T KOG1332|consen 84 IWKEENGRWTKAY-----EHAAH--------------------------------------------------------- 101 (299)
T ss_pred EEecCCCchhhhh-----hhhhh---------------------------------------------------------
Confidence 9997766311000 00000
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
.++ .+.| .+.+...++ .|+.++.||.|.|.+.+.
T Consensus 102 ------~~S-VNsV-----------------------~wapheygl----------------~LacasSDG~vsvl~~~~ 135 (299)
T KOG1332|consen 102 ------SAS-VNSV-----------------------AWAPHEYGL----------------LLACASSDGKVSVLTYDS 135 (299)
T ss_pred ------ccc-ceee-----------------------cccccccce----------------EEEEeeCCCcEEEEEEcC
Confidence 000 0000 011111111 244566677777777665
Q ss_pred CCC-c-eeeeeccccCeEEEEEeCC---C-----------CceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEE
Q 016769 250 PGI-P-LTAMKVHLEPVLCLSIDES---C-----------NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGT 313 (383)
Q Consensus 250 ~~~-~-~~~~~~h~~~v~~~~~~~~---~-----------~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~ 313 (383)
.+. . -+..+.|..-|+++++.|. + ..|++||.|+.|+||+.+..+ ..+...+..|..-++.+
T Consensus 136 ~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H~dwVRDV 213 (299)
T KOG1332|consen 136 SGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGHKDWVRDV 213 (299)
T ss_pred CCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--hhhhhhhhhcchhhhhh
Confidence 421 1 1223567777777777554 2 348999999999999987642 23333456677789999
Q ss_pred EECCCC----cEEEEEeCCCcEEEEEcCCC-ce--EEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 314 SIRPDS----KIAATAGWDRRVRIYNYRKG-SA--LAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 314 ~~~p~~----~~l~s~~~dg~i~iwd~~~~-~~--~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
++.|.- .+||+++.||++.||-.+.- ++ ...+......+..+.||+.|..|+.++.|+.|.+|.-.
T Consensus 214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 998864 47999999999999988521 11 11223345679999999999999999999999999753
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=153.32 Aligned_cols=186 Identities=19% Similarity=0.337 Sum_probs=139.7
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC---
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN--- 249 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~--- 249 (383)
++++|.-.+.+++|.+.++..+..+..+. ..+-| ..|.- +...+++|+.||.|.+|++..
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~~aHY----------Q~ITc---L~fs~----dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVLSAHY----------QSITC---LKFSD----DGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHHHhhc----------cceeE---EEEeC----CCcEEEecCCCccEEEEEEEeecc
Confidence 34445445789999999999776553221 11112 22332 223689999999999998631
Q ss_pred -----CCCceeeeeccccCeEEEEEeCC--CCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEE
Q 016769 250 -----PGIPLTAMKVHLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA 322 (383)
Q Consensus 250 -----~~~~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 322 (383)
...|+..+..|+-+|..+.+... ..+++++|.|.++++||+... ..++... ....+.++++.|-++.+
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g--~LLlti~---fp~si~av~lDpae~~~ 232 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG--VLLLTIT---FPSSIKAVALDPAERVV 232 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc--eeeEEEe---cCCcceeEEEcccccEE
Confidence 23467788899999999988554 346899999999999999643 3332221 23568999999999999
Q ss_pred EEEeCCCcEEEEEcCCC----------------ceEEEeccccc--ceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 323 ATAGWDRRVRIYNYRKG----------------SALAILKYHHA--TCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 323 ~s~~~dg~i~iwd~~~~----------------~~~~~~~~h~~--~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
.+|+.+|+|.+.++... ..+..+.||.+ +|.|++++-||..|++|+.||.|.|||++.
T Consensus 233 yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 233 YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred EecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 99999999999988432 23456778988 999999999999999999999999999863
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-20 Score=149.19 Aligned_cols=143 Identities=14% Similarity=0.234 Sum_probs=119.7
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
++++|+.++.+|+||++.+..+...+.+|...|..+.|....+.+++...|++||+||....+....+ .. ...++
T Consensus 114 ~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL----~~-~s~Vt 188 (334)
T KOG0278|consen 114 YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL----EF-NSPVT 188 (334)
T ss_pred hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE----ec-CCCCc
Confidence 57899999999999999888777888899999999999888788899899999999999866543322 21 24689
Q ss_pred EEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 312 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
++.++++|++|.. ...+.|.+||..+-..++.++ -+-.|.+..++|+...+++|++|+.++.||....
T Consensus 189 SlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg 256 (334)
T KOG0278|consen 189 SLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG 256 (334)
T ss_pred ceeeccCCCEEEE-ecCceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCC
Confidence 9999999988665 567789999999988887775 3446899999999999999999999999998643
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-20 Score=158.78 Aligned_cols=150 Identities=25% Similarity=0.396 Sum_probs=129.0
Q ss_pred ecCCCCCCceEEEEEeCCCcEEEEeCCCCCC-------ceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCC
Q 016769 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-------PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 294 (383)
Q Consensus 222 ~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~ 294 (383)
|+|+. .++++|+.||-|.+||..+++. ....+.++..+|.|+.|+.+...+++|+.||.|++|.+....
T Consensus 221 FSPDg----qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ 296 (508)
T KOG0275|consen 221 FSPDG----QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ 296 (508)
T ss_pred eCCCC----ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch
Confidence 55653 3689999999999999866431 123455678899999999988889999999999999997655
Q ss_pred CeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEE
Q 016769 295 GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVA 374 (383)
Q Consensus 295 ~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~ 374 (383)
+...+ -..|..+++++.|+.|+..+.+++.|.++|+--+.+|+.++.++||...|+.+.|.+||.+++++|.||+|+
T Consensus 297 ClRrF---drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvk 373 (508)
T KOG0275|consen 297 CLRRF---DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVK 373 (508)
T ss_pred HHHHh---hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEE
Confidence 43322 235667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeC
Q 016769 375 LWEL 378 (383)
Q Consensus 375 ~w~~ 378 (383)
+|+.
T Consensus 374 vW~~ 377 (508)
T KOG0275|consen 374 VWHG 377 (508)
T ss_pred EecC
Confidence 9986
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-19 Score=165.72 Aligned_cols=217 Identities=18% Similarity=0.212 Sum_probs=139.5
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
++|++.|.||++.|+.|.||.++ +|+|+|+|.+||||.+....|+... .| ...|+|++|.|. ++++|+||+.|+.
T Consensus 359 ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~H--ndfVTcVaFnPv-DDryFiSGSLD~K 433 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SH--NDFVTCVAFNPV-DDRYFISGSLDGK 433 (712)
T ss_pred ccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-ec--CCeeEEEEeccc-CCCcEeecccccc
Confidence 34778899999999999999875 9999999999999999877777543 33 357999999996 6799999999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
+|||++...+... +.-.. . ..-...+.|
T Consensus 434 vRiWsI~d~~Vv~---------------W~Dl~--~-----------------------------------lITAvcy~P 461 (712)
T KOG0283|consen 434 VRLWSISDKKVVD---------------WNDLR--D-----------------------------------LITAVCYSP 461 (712)
T ss_pred eEEeecCcCeeEe---------------ehhhh--h-----------------------------------hheeEEecc
Confidence 9999986532100 00000 0 000011223
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
+|+ + ++.|.-+|.+++|+.+..+.. + +..|.+-.
T Consensus 462 dGk-~-avIGt~~G~C~fY~t~~lk~~----------------------~---------------------~~~I~~~~- 495 (712)
T KOG0283|consen 462 DGK-G-AVIGTFNGYCRFYDTEGLKLV----------------------S---------------------DFHIRLHN- 495 (712)
T ss_pred CCc-e-EEEEEeccEEEEEEccCCeEE----------------------E---------------------eeeEeecc-
Confidence 332 2 333455556665554332100 0 11111110
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEe
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 326 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~ 326 (383)
+ +.. .|. .|+.+.+.+... .+++.+.|.+|+|+|++...-.+.++... ....-....|+.||++|++++
T Consensus 496 -~-----Kk~-~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~--n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 496 -K-----KKK-QGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR--NTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred -C-----ccc-cCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc--cCCcceeeeEccCCCEEEEee
Confidence 0 011 122 688888865433 47888999999999996544333332211 122345678999999999999
Q ss_pred CCCcEEEEEcC
Q 016769 327 WDRRVRIYNYR 337 (383)
Q Consensus 327 ~dg~i~iwd~~ 337 (383)
.|..|++|+.+
T Consensus 566 eDs~VYiW~~~ 576 (712)
T KOG0283|consen 566 EDSWVYIWKND 576 (712)
T ss_pred cCceEEEEeCC
Confidence 99999999984
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=141.75 Aligned_cols=237 Identities=19% Similarity=0.194 Sum_probs=157.7
Q ss_pred eeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcc
Q 016769 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET 143 (383)
Q Consensus 64 ~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (383)
.+.++++.. ++.+|++++.|+++++|+++....... ...+ .|. ..+
T Consensus 22 ~v~Sv~wn~--~g~~lasgs~dktv~v~n~e~~r~~~~--~~~~---gh~-------------------~sv-------- 67 (313)
T KOG1407|consen 22 KVHSVAWNC--DGTKLASGSFDKTVSVWNLERDRFRKE--LVYR---GHT-------------------DSV-------- 67 (313)
T ss_pred cceEEEEcc--cCceeeecccCCceEEEEecchhhhhh--hccc---CCC-------------------cch--------
Confidence 456777766 578999999999999999986532110 0000 000 000
Q ss_pred cccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeec
Q 016769 144 VDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL 223 (383)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 223 (383)
.. ..+.+..+..++ +.+.+.+||+||.++.++...+... .+... ..+.
T Consensus 68 ----------------dq-l~w~~~~~d~~a-tas~dk~ir~wd~r~~k~~~~i~~~----------~eni~----i~ws 115 (313)
T KOG1407|consen 68 ----------------DQ-LCWDPKHPDLFA-TASGDKTIRIWDIRSGKCTARIETK----------GENIN----ITWS 115 (313)
T ss_pred ----------------hh-heeCCCCCcceE-EecCCceEEEEEeccCcEEEEeecc----------CcceE----EEEc
Confidence 00 012222222333 3445689999999999987766421 11111 1244
Q ss_pred CCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeee
Q 016769 224 PSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI 303 (383)
Q Consensus 224 ~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~ 303 (383)
|.. ..++.+..|..|.+.|.++.. +....+... -+.-++|..+.+.++....-|.|.|-..-. ... ...+
T Consensus 116 p~g----~~~~~~~kdD~it~id~r~~~-~~~~~~~~~-e~ne~~w~~~nd~Fflt~GlG~v~ILsyps--Lkp--v~si 185 (313)
T KOG1407|consen 116 PDG----EYIAVGNKDDRITFIDARTYK-IVNEEQFKF-EVNEISWNNSNDLFFLTNGLGCVEILSYPS--LKP--VQSI 185 (313)
T ss_pred CCC----CEEEEecCcccEEEEEecccc-eeehhcccc-eeeeeeecCCCCEEEEecCCceEEEEeccc--ccc--cccc
Confidence 543 257889999999999998743 233333222 244566665556555555567777754421 111 1234
Q ss_pred ecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 016769 304 NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376 (383)
Q Consensus 304 ~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w 376 (383)
+.|...+.++.|+|+|+|||+|+.|-.+.+||++..-++..+..+.=+|..+.||-||++||+||+|..|-|=
T Consensus 186 ~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA 258 (313)
T KOG1407|consen 186 KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIA 258 (313)
T ss_pred ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeE
Confidence 5677788999999999999999999999999999888888898899999999999999999999999988543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=147.12 Aligned_cols=259 Identities=17% Similarity=0.289 Sum_probs=157.9
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEee------Ccccc---------ccc-------------ccccc--
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD------TVQHR---------TVS-------------SSWVH-- 59 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~------~~~~~---------~~~-------------~~~~~-- 59 (383)
.+.++.||.+.|++|+|++.+.+++|+|.|++-.+|. ++... .+. ....|
T Consensus 182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence 4567889999999999999999999999999999997 21100 000 00000
Q ss_pred ------cccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCC
Q 016769 60 ------SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK 133 (383)
Q Consensus 60 ------~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (383)
..+|..+.++...-.++.+++++++|.|..+||+++++... .+.. ..
T Consensus 262 RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~----~LtG-------------Hd---------- 314 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN----ILTG-------------HD---------- 314 (481)
T ss_pred eeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec----cccC-------------cc----------
Confidence 00111222222222356889999999999999999986321 1000 00
Q ss_pred ccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCC-eeeEeccCcCCCCCCcCCCC
Q 016769 134 DCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKG 212 (383)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~-~~~~~~~~~~~~s~~~~~~~ 212 (383)
....-|+.+..+-+++..+.|-+.|+||.+..- .+..++.+ ..
T Consensus 315 --------------------------~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGH----------td 358 (481)
T KOG0300|consen 315 --------------------------SELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGH----------TD 358 (481)
T ss_pred --------------------------hhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccc----------cc
Confidence 000012222223466777888999999987322 12233221 11
Q ss_pred CceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccC
Q 016769 213 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292 (383)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~ 292 (383)
. ...+ .|... ..+++|+.|.+|++||+++-..++.++.- ..+++.+.++.....++.--....|++||++.
T Consensus 359 t-VTS~--vF~~d-----d~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 359 T-VTSV--VFNTD-----DRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred c-eeEE--EEecC-----CceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCC
Confidence 1 1111 13221 25899999999999999987777776653 35777787776655555555566799999975
Q ss_pred CCCeeEEeeeeecCCCCeEEEEECCCCc--EEEEEeCCCcEEEEEcCCCc
Q 016769 293 STGSCVIKKEINLERPGISGTSIRPDSK--IAATAGWDRRVRIYNYRKGS 340 (383)
Q Consensus 293 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~--~l~s~~~dg~i~iwd~~~~~ 340 (383)
..-..+-...-..|.--++++++..+.. -+.+++.|+.+.-|.+....
T Consensus 430 ~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 430 NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred CccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 3221111111223445688888864432 46788999999999986543
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=144.62 Aligned_cols=184 Identities=21% Similarity=0.350 Sum_probs=128.2
Q ss_pred eeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCc
Q 016769 174 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 253 (383)
Q Consensus 174 ~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~ 253 (383)
+++|+-|+.||.+|+.++.... +.. +.....|+. +.+. ...+++|++|++|++||.+... .
T Consensus 68 ~~~G~~dg~vr~~Dln~~~~~~-igt----------h~~~i~ci~---~~~~----~~~vIsgsWD~~ik~wD~R~~~-~ 128 (323)
T KOG1036|consen 68 IVTGGLDGQVRRYDLNTGNEDQ-IGT----------HDEGIRCIE---YSYE----VGCVISGSWDKTIKFWDPRNKV-V 128 (323)
T ss_pred EEEeccCceEEEEEecCCccee-ecc----------CCCceEEEE---eecc----CCeEEEcccCccEEEEeccccc-c
Confidence 4567788999999998877422 211 112233322 2222 1258999999999999998632 2
Q ss_pred eeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEE
Q 016769 254 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 333 (383)
Q Consensus 254 ~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~i 333 (383)
...+. -...|.+++.. ++.++.|+.|..+.+|||....... ......-...+.++++-|++.-+++++-||+|.+
T Consensus 129 ~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 129 VGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV 203 (323)
T ss_pred ccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence 22222 12367777664 4678999999999999997644322 1111112245889999998887888999999999
Q ss_pred EEcCCC----ceEEEeccccc---------ceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 334 YNYRKG----SALAILKYHHA---------TCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 334 wd~~~~----~~~~~~~~h~~---------~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
=.++.. +.-..++.|.. +|++++|||--+.||||+.||.|.+||+...
T Consensus 204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred EccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence 777665 33346666753 7899999999889999999999999998643
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-17 Score=155.22 Aligned_cols=356 Identities=15% Similarity=0.167 Sum_probs=210.2
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
-+.++++.+|...|+++.-+|-=+.+|.|-.+|+|.++|+..++.+...... -+.+.+++|..+ +...++++...|.
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d--~g~VtslSFrtD-G~p~las~~~~G~ 268 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD--WGRVTSLSFRTD-GNPLLASGRSNGD 268 (910)
T ss_pred CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc--ccceeEEEeccC-CCeeEEeccCCce
Confidence 3567899999999999999999999999999999999999998888775432 246889999874 3345678888899
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccC---cccccCccccccccCCccceecc
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG---ETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
+.+||++...... .+...+.++.... ..+...|....+.....-..|....+ ........++.+ ++.++ .
T Consensus 269 m~~wDLe~kkl~~-v~~nah~~sv~~~-~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~-Pp~~i----r 341 (910)
T KOG1539|consen 269 MAFWDLEKKKLIN-VTRNAHYGSVTGA-TFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA-PPSCI----R 341 (910)
T ss_pred EEEEEcCCCeeee-eeeccccCCcccc-eecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC-Cchhe----e
Confidence 9999998753211 0111111110000 00011111111111111111211111 011111111111 11110 0
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCC---CCCCcC-CC----CCceeeEEEeecCCC-CCCceEEEE
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG---GSPNFS-SK----GRGMCMAVQAYLPSK-SQGFVNVLA 235 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~---~s~~~~-~~----~~~~~~~~~~~~~~~-~~~~~~~~s 235 (383)
+......+ +.+...|++.|.+++...++-..+.+.... -..... +. ..+..++ +...+ ... .++++
T Consensus 342 fy~~~g~~-ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa---~~~~RE~~W-~Nv~~ 416 (910)
T KOG1539|consen 342 FYGSQGHF-ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFA---FENAREKEW-DNVIT 416 (910)
T ss_pred eeccCcEE-EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeee---cccchhhhh-cceeE
Confidence 11111223 344567888888887654433222220000 000000 00 0011111 10000 001 13455
Q ss_pred E-eCCCcEEEEeCCCCCCceeeee-----ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCC
Q 016769 236 G-YEDGSILVWDIRNPGIPLTAMK-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 309 (383)
Q Consensus 236 g-~~dg~i~~wdl~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~ 309 (383)
+ -.+..++.|++++...-...++ .-...+.+++++..|+..+.|...|.|-+|+++.+-.+..+- .-..+...
T Consensus 417 ~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~-~~~ah~~~ 495 (910)
T KOG1539|consen 417 AHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG-DSPAHKGE 495 (910)
T ss_pred EecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc-cCccccCc
Confidence 4 5566799999987433222222 122567888889999988999999999999997542111110 11346678
Q ss_pred eEEEEECCCCcEEEEEeCCCcEEEEEcCCCc-----------------------------------------eEEEeccc
Q 016769 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGS-----------------------------------------ALAILKYH 348 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~-----------------------------------------~~~~~~~h 348 (383)
|.++++..-++.+++++.+|-++.||..... .+..+.+|
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh 575 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH 575 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc
Confidence 9999999888999999999999999986532 12245689
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 349 HATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 349 ~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.+.|++.+|||||++|++++.|++|++||+.
T Consensus 576 ~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 576 GNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred ccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 9999999999999999999999999999984
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-19 Score=151.17 Aligned_cols=200 Identities=20% Similarity=0.325 Sum_probs=142.5
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccC---cCCCCCCcC---CCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEE
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQN---SCGGSPNFS---SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~---~~~~s~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~ 244 (383)
..++++-+..|.|+|||+........-.+- .....+.|. +++.++.+ .++|.. ...+++|---+.|++
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~L---dWSp~~---~g~LlsGDc~~~I~l 238 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGL---DWSPIK---TGRLLSGDCVKGIHL 238 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceee---eccccc---ccccccCccccceEe
Confidence 346777777899999998654321111100 000111111 11222222 233321 124777777788999
Q ss_pred EeCCCCCC--ceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCC-eeEEeeeeecCCCCeEEEEECCCCc
Q 016769 245 WDIRNPGI--PLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTG-SCVIKKEINLERPGISGTSIRPDSK 320 (383)
Q Consensus 245 wdl~~~~~--~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~-~~~~~~~~~~~~~~i~~~~~~p~~~ 320 (383)
|...++.- ....+.+|+..|..+.++|.-. .+++|+.|++|+|||++.... .++.. +.+.+.|+-++|+..-.
T Consensus 239 w~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---kAh~sDVNVISWnr~~~ 315 (440)
T KOG0302|consen 239 WEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---KAHNSDVNVISWNRREP 315 (440)
T ss_pred eeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---eccCCceeeEEccCCcc
Confidence 98876431 1234567999999999988766 468999999999999986532 33332 56777899999998888
Q ss_pred EEEEEeCCCcEEEEEcCC---CceEEEecccccceeEEEEeCCC-CEEEEEeCCCcEEEEeCC
Q 016769 321 IAATAGWDRRVRIYNYRK---GSALAILKYHHATCNAVSFSSDC-KLMASASEDSTVALWELY 379 (383)
Q Consensus 321 ~l~s~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~v~~spd~-~~las~s~d~~i~~w~~~ 379 (383)
+||+|+.||+++|||++. ++++..++.|..+|.+|.|+|.. ..|+++|.|..|.|||+.
T Consensus 316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 999999999999999965 67788999999999999999965 488999999999999996
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-17 Score=144.46 Aligned_cols=277 Identities=20% Similarity=0.302 Sum_probs=179.2
Q ss_pred eeeecC-CceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEe
Q 016769 13 VLRGHR-ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (383)
Q Consensus 13 ~l~gH~-~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~W 91 (383)
.|+++. .-|+||+|.++|+ ++||-.+|.|.||+..+.+.......| ..++.+++.-- +..|+||+.|..|..|
T Consensus 240 ~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~~L~~lr---~GtllSGgKDRki~~W 313 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAH--DGGVFSLCMLR---DGTLLSGGKDRKIILW 313 (626)
T ss_pred ccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeec--CCceEEEEEec---CccEeecCccceEEec
Confidence 344443 6899999999996 788999999999998655444433333 35677776554 3678889999999999
Q ss_pred ecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCc
Q 016769 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPK 171 (383)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (383)
| .+-...+ + +..|... | .+..+......
T Consensus 314 d-~~y~k~r-~----------------~elPe~~---------------G-------------------~iRtv~e~~~d 341 (626)
T KOG2106|consen 314 D-DNYRKLR-E----------------TELPEQF---------------G-------------------PIRTVAEGKGD 341 (626)
T ss_pred c-ccccccc-c----------------ccCchhc---------------C-------------------CeeEEecCCCc
Confidence 9 2111000 0 0001000 0 00000011111
Q ss_pred eeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC
Q 016769 172 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~ 251 (383)
+++ |...+.|.-=.++++..+....+. ..--+ . +..|+. ..++++++|+.+++|+ . .
T Consensus 342 -i~v-GTtrN~iL~Gt~~~~f~~~v~gh~---------delwg--l---a~hps~----~q~~T~gqdk~v~lW~-~--~ 398 (626)
T KOG2106|consen 342 -ILV-GTTRNFILQGTLENGFTLTVQGHG---------DELWG--L---ATHPSK----NQLLTCGQDKHVRLWN-D--H 398 (626)
T ss_pred -EEE-eeccceEEEeeecCCceEEEEecc---------cceee--E---EcCCCh----hheeeccCcceEEEcc-C--C
Confidence 222 223344444445555543333210 00011 1 122332 2488999999999998 2 2
Q ss_pred CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcE
Q 016769 252 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 331 (383)
Q Consensus 252 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i 331 (383)
.+ ..-+.-.+++.|+.|+|++ .++.|...|+-.+.|.+... ++. .+.....++.++|+|+|.+||.|+.|+.|
T Consensus 399 k~-~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~---lv~--~~~d~~~ls~v~ysp~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 399 KL-EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD---LVT--IHTDNEQLSVVRYSPDGAFLAVGSHDNHI 471 (626)
T ss_pred ce-eEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccce---eEE--EEecCCceEEEEEcCCCCEEEEecCCCeE
Confidence 22 2222345789999999999 88999999999999887532 222 22335689999999999999999999999
Q ss_pred EEEEcCC-CceEEEecc-cccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 332 RIYNYRK-GSALAILKY-HHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 332 ~iwd~~~-~~~~~~~~~-h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
+||.+.. ++.+..... |..+|..+.||+|+++|.+-|.|-.|-.|.
T Consensus 472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 472 YIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 9999965 455544433 347899999999999999999999999994
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=150.52 Aligned_cols=188 Identities=20% Similarity=0.284 Sum_probs=148.6
Q ss_pred eeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCc
Q 016769 174 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 253 (383)
Q Consensus 174 ~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~ 253 (383)
+..|+.|..+-++|..+++.+..++.+. .-+..+ .+.+.. ..+++++.|..|++|..-....
T Consensus 234 ilTGG~d~~av~~d~~s~q~l~~~~Gh~------------kki~~v-~~~~~~----~~v~~aSad~~i~vws~~~~s~- 295 (506)
T KOG0289|consen 234 ILTGGEDKTAVLFDKPSNQILATLKGHT------------KKITSV-KFHKDL----DTVITASADEIIRVWSVPLSSE- 295 (506)
T ss_pred ceecCCCCceEEEecchhhhhhhccCcc------------eEEEEE-Eeccch----hheeecCCcceEEeeccccccC-
Confidence 3456667889999998888776665421 112222 244432 2478899999999998765443
Q ss_pred eeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEE
Q 016769 254 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 333 (383)
Q Consensus 254 ~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~i 333 (383)
......|.++|..+..++++.++++++.|+...+.|+.... .+.+...+...-.+++.+|||||-.|++|..|+.++|
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~--~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS--QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc--EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 34456799999999999999999999999999999997543 3322222222345889999999999999999999999
Q ss_pred EEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 334 YNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 334 wd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
||+..+..+..+.+|.++|.+++|+-+|-+||++.+|+.|++||+...
T Consensus 374 wdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred EEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 999999989999999999999999999999999999999999999753
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-17 Score=146.01 Aligned_cols=268 Identities=12% Similarity=0.121 Sum_probs=164.0
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeE-EEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCccee-EecccCC
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDG 86 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L-~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~ 86 (383)
+++.++.+|.. +.+++|+|+++.| ++++.|+.|++||..+++....+..+ .....+.+.++ ++.+ ++++.|+
T Consensus 22 ~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~~~~--g~~l~~~~~~~~ 95 (300)
T TIGR03866 22 EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG---PDPELFALHPN--GKILYIANEDDN 95 (300)
T ss_pred ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC---CCccEEEECCC--CCEEEEEcCCCC
Confidence 45667776644 6789999999876 67788999999999876654433222 12345567663 4555 5667899
Q ss_pred eEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 87 ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
++++||+.+..... .+ .... . .....+.
T Consensus 96 ~l~~~d~~~~~~~~----~~-------------~~~~-------~----------------------------~~~~~~~ 123 (300)
T TIGR03866 96 LVTVIDIETRKVLA----EI-------------PVGV-------E----------------------------PEGMAVS 123 (300)
T ss_pred eEEEEECCCCeEEe----Ee-------------eCCC-------C----------------------------cceEEEC
Confidence 99999997642100 00 0000 0 0001123
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
+++. +++++......+.+||+++.+....+..... ...+ .+.++ +...++++..++.|++||
T Consensus 124 ~dg~-~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-----------~~~~---~~s~d---g~~l~~~~~~~~~v~i~d 185 (300)
T TIGR03866 124 PDGK-IVVNTSETTNMAHFIDTKTYEIVDNVLVDQR-----------PRFA---EFTAD---GKELWVSSEIGGTVSVID 185 (300)
T ss_pred CCCC-EEEEEecCCCeEEEEeCCCCeEEEEEEcCCC-----------ccEE---EECCC---CCEEEEEcCCCCEEEEEE
Confidence 4443 4444444345678889988765543322110 0011 23332 222234556799999999
Q ss_pred CCCCCCceeeeeccc-----c--CeEEEEEeCCCCceEE-EEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCC
Q 016769 247 IRNPGIPLTAMKVHL-----E--PVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 318 (383)
Q Consensus 247 l~~~~~~~~~~~~h~-----~--~v~~~~~~~~~~~~~s-~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 318 (383)
+++.. .+..+..+. . ....+.+++++..++. .+.++++.+||++... .. ... .....+.+++|+|+
T Consensus 186 ~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~--~~--~~~-~~~~~~~~~~~~~~ 259 (300)
T TIGR03866 186 VATRK-VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE--VL--DYL-LVGQRVWQLAFTPD 259 (300)
T ss_pred cCcce-eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc--EE--EEE-EeCCCcceEEECCC
Confidence 98743 233332221 1 1235778888887544 4557789999986432 21 111 12346889999999
Q ss_pred CcEEEEE-eCCCcEEEEEcCCCceEEEecccccceeEEEEeC
Q 016769 319 SKIAATA-GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS 359 (383)
Q Consensus 319 ~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp 359 (383)
+++|+++ +.+++|++||+.+++.+..++.. +..+.++|+|
T Consensus 260 g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 260 EKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 9998876 46999999999999998888754 5568999876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-17 Score=136.41 Aligned_cols=299 Identities=17% Similarity=0.226 Sum_probs=184.4
Q ss_pred CCCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccC
Q 016769 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
+|.+...+|.--. -.|+.|++-|.+||.|..||.|.+||+.+.+.-..+..|. +.+.+++++. +|+.|+|+|.|
T Consensus 13 ~PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~--~pi~sl~WS~--dgr~LltsS~D 86 (405)
T KOG1273|consen 13 YPEELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV--RPITSLCWSR--DGRKLLTSSRD 86 (405)
T ss_pred ChHhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccc--cceeEEEecC--CCCEeeeecCC
Confidence 5666666765222 6889999999999999999999999998876444443343 5688999988 57999999999
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCc-eeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
..+++||+..|.+ ...++..+ .-++.+...+ ...+......+ ...+..
T Consensus 87 ~si~lwDl~~gs~----l~rirf~spv~~~q~hp~k-----------~n~~va~~~~~----------------sp~vi~ 135 (405)
T KOG1273|consen 87 WSIKLWDLLKGSP----LKRIRFDSPVWGAQWHPRK-----------RNKCVATIMEE----------------SPVVID 135 (405)
T ss_pred ceeEEEeccCCCc----eeEEEccCccceeeecccc-----------CCeEEEEEecC----------------CcEEEE
Confidence 9999999988743 22222111 0011111100 00000000000 000000
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEE
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~ 244 (383)
++..-..+|. -+.++.+ ..+. ..+ .|- + . ...+++|..-|.+.+
T Consensus 136 ~s~~~h~~Lp--~d~d~dl-----------------------n~sa-s~~------~fd--r-~-g~yIitGtsKGkllv 179 (405)
T KOG1273|consen 136 FSDPKHSVLP--KDDDGDL-----------------------NSSA-SHG------VFD--R-R-GKYIITGTSKGKLLV 179 (405)
T ss_pred ecCCceeecc--CCCcccc-----------------------cccc-ccc------ccc--C-C-CCEEEEecCcceEEE
Confidence 1000000000 0001000 0000 000 011 1 1 136889999999999
Q ss_pred EeCCCCCCceeeeeccc-cCeEEEEEeCCCCceEEEEcCCcEEEEEccCCC---CeeEEeeeeec----CCCCeEEEEEC
Q 016769 245 WDIRNPGIPLTAMKVHL-EPVLCLSIDESCNGGISGGADQKIVLYNLDHST---GSCVIKKEINL----ERPGISGTSIR 316 (383)
Q Consensus 245 wdl~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~---~~~~~~~~~~~----~~~~i~~~~~~ 316 (383)
+|..+- .++..++... ..|..+.+...+..++.-+.|..|+.|++..-. .........+. ..-.-.++.|+
T Consensus 180 ~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs 258 (405)
T KOG1273|consen 180 YDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS 258 (405)
T ss_pred Eecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence 998774 3455555444 678888999999999999999999999976211 00000000000 00123567899
Q ss_pred CCCcEEEEEe-CCCcEEEEEcCCCceEEEecccc-cceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 317 PDSKIAATAG-WDRRVRIYNYRKGSALAILKYHH-ATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 317 p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.+|.|+.+++ ....++||....|..++.+-|-+ +....|.|+|-...+++- ..|.|++|...
T Consensus 259 ~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 259 GDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred CCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 9999987766 45689999999999999998777 678889999987777777 77899999764
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-18 Score=155.27 Aligned_cols=297 Identities=21% Similarity=0.280 Sum_probs=188.2
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccc----ccccc-cccccceeeeeeecCCCCcceeEecccCCe
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT----VSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
++.||.+-|+++.++|.+..|+|+|+|.++.+|...+..- ...+. ..+.+.+....-+.+ +++.+++-|.-|-
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~--n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP--NSNVIIAHGRTGG 339 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC--CCCEEEEecccCc
Confidence 4569999999999999999999999999999999754311 11110 011234456666666 3577888899999
Q ss_pred EEEeecCCCCCCCCCeeeeec-CceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 88 VKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
+++|--++.. ..+... .+.|+. .+.+ .+..
T Consensus 340 ~hlWkt~d~~-----~w~~~~~iSGH~~-------------------~V~d-------------------------v~W~ 370 (764)
T KOG1063|consen 340 FHLWKTKDKT-----FWTQEPVISGHVD-------------------GVKD-------------------------VDWD 370 (764)
T ss_pred EEEEeccCcc-----ceeeccccccccc-------------------ccee-------------------------eeec
Confidence 9999822211 011000 011100 0000 0112
Q ss_pred CCCCceeeeccCCcceEEEEecCCCC-eeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEE
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~w 245 (383)
+.| .|++.+ +.|.+-|++---..+ .-..+.. ++..|+-+....+.+. ...+++|.+.+-+|+|
T Consensus 371 psG-eflLsv-s~DQTTRlFa~wg~q~~wHEiaR----------PQiHGyDl~c~~~vn~----~~~FVSgAdEKVlRvF 434 (764)
T KOG1063|consen 371 PSG-EFLLSV-SLDQTTRLFARWGRQQEWHEIAR----------PQIHGYDLTCLSFVNE----DLQFVSGADEKVLRVF 434 (764)
T ss_pred CCC-CEEEEe-ccccceeeecccccccceeeecc----------cccccccceeeehccC----Cceeeecccceeeeee
Confidence 333 355544 456777776433111 0011110 1112222222223322 1246777777777888
Q ss_pred eCCC-------------------------------------------CCC-------------------c----------
Q 016769 246 DIRN-------------------------------------------PGI-------------------P---------- 253 (383)
Q Consensus 246 dl~~-------------------------------------------~~~-------------------~---------- 253 (383)
+.-. ++. |
T Consensus 435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL 514 (764)
T KOG1063|consen 435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL 514 (764)
T ss_pred cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence 6400 000 0
Q ss_pred ---eeeeeccccCeEEEEEeCCCCceEEEEcCC-----cEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEE
Q 016769 254 ---LTAMKVHLEPVLCLSIDESCNGGISGGADQ-----KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 325 (383)
Q Consensus 254 ---~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~-----~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~ 325 (383)
.+.+-+|...|.+++.+++++.+++++... .|++|+... ......+..|+-.|+.++|+||++||++.
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~----W~~~~~L~~HsLTVT~l~FSpdg~~LLsv 590 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN----WLQVQELEGHSLTVTRLAFSPDGRYLLSV 590 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc----hhhhheecccceEEEEEEECCCCcEEEEe
Confidence 012346888899999999999989887643 478897542 23334566777789999999999999999
Q ss_pred eCCCcEEEEEcCCCc----eEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 326 GWDRRVRIYNYRKGS----ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 326 ~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
|.|+++.+|...... .+...+.|.+=|++..|+||++++||+|+|.+|++|...+
T Consensus 591 sRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 591 SRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred ecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 999999999884432 2345778999999999999999999999999999998854
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-20 Score=170.99 Aligned_cols=183 Identities=21% Similarity=0.344 Sum_probs=147.2
Q ss_pred eccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCce
Q 016769 175 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 254 (383)
Q Consensus 175 ~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~ 254 (383)
+.|+.+-.+.||.+.....+..+..+. ..+-++ .|.+. ...+.+|+.+|+|++|||+... .+
T Consensus 44 ~~Gg~~~k~~L~~i~kp~~i~S~~~he----------spIeSl---~f~~~----E~LlaagsasgtiK~wDleeAk-~v 105 (825)
T KOG0267|consen 44 VTGGEDEKVNLWAIGKPNAITSLTGHE----------SPIESL---TFDTS----ERLLAAGSASGTIKVWDLEEAK-IV 105 (825)
T ss_pred ccCCCceeeccccccCCchhheeeccC----------Ccceee---ecCcc----hhhhcccccCCceeeeehhhhh-hh
Confidence 345556778889887766555443211 111111 12222 2346779999999999999744 46
Q ss_pred eeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEE
Q 016769 255 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 334 (383)
Q Consensus 255 ~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iw 334 (383)
+++.+|..++..+.|+|.+.+.++|+.|..+++||+....+.... +.+...+..++|+|+|+++++++.|.+++||
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~----~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~ 181 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY----KSHTRVVDVLRLSPDGRWVASGGEDNTVKIW 181 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhccCceeee----cCCcceeEEEeecCCCceeeccCCcceeeee
Confidence 789999999999999999998899999999999999866554432 3355678999999999999999999999999
Q ss_pred EcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 335 NYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 335 d~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
|+..|+.+..|..|+..+.++.|+|..-.+++||.|++|++||+.
T Consensus 182 d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 182 DLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred cccccccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 999999999999999999999999998899999999999999985
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-19 Score=166.81 Aligned_cols=238 Identities=21% Similarity=0.345 Sum_probs=181.9
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEee
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd 92 (383)
.+-.|...|.++..-..++.+++|+.|..+.+|.......+..+..|. ..|-++.|.+. ...+++|+.||+||+||
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he--spIeSl~f~~~--E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE--SPIESLTFDTS--ERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccC--CcceeeecCcc--hhhhcccccCCceeeee
Confidence 345789999999887778899999999999999987766666666654 46888888873 35667888999999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
++++...++ +
T Consensus 99 leeAk~vrt----L------------------------------------------------------------------ 108 (825)
T KOG0267|consen 99 LEEAKIVRT----L------------------------------------------------------------------ 108 (825)
T ss_pred hhhhhhhhh----h------------------------------------------------------------------
Confidence 986532110 0
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
.|...+.+++ . |.|- + .+.++|+.|..+++||++..+
T Consensus 109 ---tgh~~~~~sv---------------------~--------------f~P~---~-~~~a~gStdtd~~iwD~Rk~G- 145 (825)
T KOG0267|consen 109 ---TGHLLNITSV---------------------D--------------FHPY---G-EFFASGSTDTDLKIWDIRKKG- 145 (825)
T ss_pred ---hccccCccee---------------------e--------------eccc---e-EEeccccccccceehhhhccC-
Confidence 0000000110 0 1110 0 124678889999999999744
Q ss_pred ceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEE
Q 016769 253 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 332 (383)
Q Consensus 253 ~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~ 332 (383)
+....++|...|.++.|.|++.++++++.|+.+++||+..+ .+.++.+.+...+..+.|+|..-.+++|+.|++++
T Consensus 146 c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag----k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 146 CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG----KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred ceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc----ccccccccccccccccccCchhhhhccCCCCceee
Confidence 46778889999999999999999999999999999998533 23345566777899999999999999999999999
Q ss_pred EEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCC
Q 016769 333 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS 371 (383)
Q Consensus 333 iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~ 371 (383)
+||+++-+.+...+.....|.+++|+|+++.+.+|-.+.
T Consensus 222 f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 222 FWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 999999888887777788899999999999998886554
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-18 Score=148.88 Aligned_cols=201 Identities=21% Similarity=0.251 Sum_probs=140.8
Q ss_pred eeeccCCcceEEEEecCCCCee---eEeccC---cCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 173 MAVAGEQLSEVEIWDLNTAERC---TRLHQN---SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~---~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
+++.|..+..|.||||.-...+ .++..- ....--..+....++.-++..+.. +......|++|+.|++|++||
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~-n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW-NRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh-ccccceeEEecCCCceEEEEE
Confidence 4556778889999999653322 222210 000000001111122222221221 122234578899999999999
Q ss_pred CCCCCCceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC-cEEEE
Q 016769 247 IRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KIAAT 324 (383)
Q Consensus 247 l~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~l~s 324 (383)
+.+ +.|-..++.|...|.++.|++... .+++|+.|+++++.|++..+..... .+ ..+.|-.+++.|.. ..+++
T Consensus 273 ~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~---wk-~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 273 VDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE---WK-FDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred cCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce---EE-eccceEEEEecCCCceeEEE
Confidence 998 456778888999999999977654 6789999999999999854332221 22 12567788887754 46888
Q ss_pred EeCCCcEEEEEcCCC-ceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 325 AGWDRRVRIYNYRKG-SALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 325 ~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
+..||+++-+|++.. +++.++++|...|.++.+++.-+ +|+|+|.|++|++|++.
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence 899999999999875 89999999999999999988665 89999999999999985
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.9e-18 Score=147.37 Aligned_cols=211 Identities=22% Similarity=0.374 Sum_probs=153.8
Q ss_pred ecCCceeeEEEeCCC-CeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecC
Q 016769 16 GHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (383)
Q Consensus 16 gH~~~V~~v~f~~~~-~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~ 94 (383)
||++.|.+|+++... ..|||||+|.+|++||+.++++...+..|+ ..+.++.+.+. ....|++|+.|+++++.|+.
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~--k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG--KKVQTLEWHPY-EPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC--CceeEEEecCC-CceEEEeccccceEEeeecc
Confidence 899999999998764 589999999999999999999887776554 45788888875 45789999999999999985
Q ss_pred CCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceee
Q 016769 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMA 174 (383)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (383)
...... ..+ -
T Consensus 318 ~~~~s~---------------------------------------------------------------------~~w-k 327 (463)
T KOG0270|consen 318 DPSNSG---------------------------------------------------------------------KEW-K 327 (463)
T ss_pred CccccC---------------------------------------------------------------------ceE-E
Confidence 421000 000 0
Q ss_pred eccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCce
Q 016769 175 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 254 (383)
Q Consensus 175 ~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~ 254 (383)
+.|. =..-.|+-.. ...++++..||+|+-+|+|+++.++
T Consensus 328 ~~g~--VEkv~w~~~s---------------------------------------e~~f~~~tddG~v~~~D~R~~~~~v 366 (463)
T KOG0270|consen 328 FDGE--VEKVAWDPHS---------------------------------------ENSFFVSTDDGTVYYFDIRNPGKPV 366 (463)
T ss_pred eccc--eEEEEecCCC---------------------------------------ceeEEEecCCceEEeeecCCCCCce
Confidence 0010 0122343111 1135678899999999999998899
Q ss_pred eeeeccccCeEEEEEeCCCCc-eEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCc-EEEEEeCCCcEE
Q 016769 255 TAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK-IAATAGWDRRVR 332 (383)
Q Consensus 255 ~~~~~h~~~v~~~~~~~~~~~-~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~l~s~~~dg~i~ 332 (383)
-.++.|.++|.++++...... +++++.|+.+++|++...+........+ ..+...|+++.|+-. .+|.|+..+.++
T Consensus 367 wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~ 444 (463)
T KOG0270|consen 367 WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF--KLGRLHCFALDPDVAFTLAFGGEKAVLR 444 (463)
T ss_pred eEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc--cccceeecccCCCcceEEEecCccceEE
Confidence 999999999999999877665 5788999999999997655433222222 223467777888754 567777788899
Q ss_pred EEEcCCCceE
Q 016769 333 IYNYRKGSAL 342 (383)
Q Consensus 333 iwd~~~~~~~ 342 (383)
+||+.+...+
T Consensus 445 vwd~~~~~~V 454 (463)
T KOG0270|consen 445 VWDIFTNSPV 454 (463)
T ss_pred EeecccChhH
Confidence 9999776543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=144.54 Aligned_cols=205 Identities=15% Similarity=0.269 Sum_probs=147.0
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCe---eeEeccCcC-----CCCCCcCCCCCceeeEEEeecCCCCCCceEEEE
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAER---CTRLHQNSC-----GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 235 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~---~~~~~~~~~-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 235 (383)
.++++|. +++.|+.|-.|+|.|++.... ...+..+.. +...-+++-..+.++ .|.|.. ..+++
T Consensus 119 afs~DG~--lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l---~FHPre----~ILiS 189 (430)
T KOG0640|consen 119 AFSPDGS--LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL---DFHPRE----TILIS 189 (430)
T ss_pred eeCCCCc--EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce---eecchh----heEEe
Confidence 3556664 678889999999999874321 111111000 000011111122222 355532 24789
Q ss_pred EeCCCcEEEEeCCCCCC--ceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEee-eeecCCCCeEE
Q 016769 236 GYEDGSILVWDIRNPGI--PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK-EINLERPGISG 312 (383)
Q Consensus 236 g~~dg~i~~wdl~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~-~~~~~~~~i~~ 312 (383)
|+.|++|++||+.++.. ..+.++ ..++|++++|+|.|..++.|..-..+++||++..++ .... .-..+...|++
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc--fvsanPd~qht~ai~~ 266 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC--FVSANPDDQHTGAITQ 266 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeE--eeecCcccccccceeE
Confidence 99999999999976432 122222 357999999999999999988888999999986543 2222 22456678999
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCCceEEEec-cccc-ceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK-YHHA-TCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~-~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+.+++.++..++|+.||.|+|||--+++++.++. +|.+ .|.+..|.-+|+++.+.+.|.+|++|.+..
T Consensus 267 V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 267 VRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred EEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence 9999999999999999999999999999998875 4654 688999999999999999999999999864
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=136.61 Aligned_cols=233 Identities=18% Similarity=0.224 Sum_probs=150.5
Q ss_pred CCCeeeeeecCCceeeEEEe-C-CCCeEEEecCCCeEEEeeCccccccccccccc-ccceeeeeeecCCCCcceeEeccc
Q 016769 8 PDPVAVLRGHRASVTDVCFH-Q-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQGR 84 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~-~-~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~ 84 (383)
..+..+|.||+++|+.++|. | -|.+|||+|.||.|.||.-.+++-. ....|. +..++-++++-|..-+-.|++++.
T Consensus 46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~-k~~e~~~h~~SVNsV~wapheygl~LacasS 124 (299)
T KOG1332|consen 46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT-KAYEHAAHSASVNSVAWAPHEYGLLLACASS 124 (299)
T ss_pred ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh-hhhhhhhhcccceeecccccccceEEEEeeC
Confidence 36788999999999999984 4 6899999999999999998777422 222221 224577788887644567889999
Q ss_pred CCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 85 D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
||+|++.++.+...-..+ .+ .... ++|- ..+ +
T Consensus 125 DG~vsvl~~~~~g~w~t~--ki---------------~~aH-------------~~Gv----------------nsV--s 156 (299)
T KOG1332|consen 125 DGKVSVLTYDSSGGWTTS--KI---------------VFAH-------------EIGV----------------NSV--S 156 (299)
T ss_pred CCcEEEEEEcCCCCccch--hh---------------hhcc-------------cccc----------------cee--e
Confidence 999999998654110000 00 0000 0000 000 0
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEE
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~ 244 (383)
..+. ...+.+ ..+ .+.. .-..+++|+-|..|+|
T Consensus 157 wapa---------~~~g~~-------------~~~---------~~~~----------------~~krlvSgGcDn~Vki 189 (299)
T KOG1332|consen 157 WAPA---------SAPGSL-------------VDQ---------GPAA----------------KVKRLVSGGCDNLVKI 189 (299)
T ss_pred ecCc---------CCCccc-------------ccc---------Cccc----------------ccceeeccCCccceee
Confidence 0000 000000 000 0000 0124789999999999
Q ss_pred EeCCCCCCce-eeeeccccCeEEEEEeCCCC----ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC
Q 016769 245 WDIRNPGIPL-TAMKVHLEPVLCLSIDESCN----GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 319 (383)
Q Consensus 245 wdl~~~~~~~-~~~~~h~~~v~~~~~~~~~~----~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 319 (383)
|+..+..-.+ .++..|.+.|+.+++.|... .+++++.|+++.||..+........ +.++.....+..+++++.|
T Consensus 190 W~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~-tll~~f~~~~w~vSWS~sG 268 (299)
T KOG1332|consen 190 WKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKK-TLLEEFPDVVWRVSWSLSG 268 (299)
T ss_pred eecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccc-cccccCCcceEEEEEeccc
Confidence 9987643222 34789999999999988652 5689999999999987744332221 1122233468899999999
Q ss_pred cEEEEEeCCCcEEEEEcC
Q 016769 320 KIAATAGWDRRVRIYNYR 337 (383)
Q Consensus 320 ~~l~s~~~dg~i~iwd~~ 337 (383)
+.|+.++.|.+|.+|--.
T Consensus 269 n~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 269 NILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cEEEEecCCcEEEEEEeC
Confidence 999999999999999764
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-16 Score=146.86 Aligned_cols=259 Identities=19% Similarity=0.282 Sum_probs=180.2
Q ss_pred CCCCCCCeeeeeecC--------CceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccc-cccccccceeeeeeecCCC
Q 016769 4 RPPPPDPVAVLRGHR--------ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-SWVHSAAHGIVSVATGPSI 74 (383)
Q Consensus 4 ~~~~~~~~~~l~gH~--------~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 74 (383)
|++.++....+.-|+ .+|++|||+.+.+.||.+=+||.|-+|++...-.... +.++ ....+-++++.+
T Consensus 3 r~~~~~s~~~m~vhrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~-~drsIE~L~W~e-- 79 (691)
T KOG2048|consen 3 RKKEPQSRGKMQVHRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGP-EDRSIESLAWAE-- 79 (691)
T ss_pred cccCCcccceeEEEEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecC-CCCceeeEEEcc--
Confidence 344445445555553 5899999999999999999999999999977544332 2222 234577788875
Q ss_pred CcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccc
Q 016769 75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKE 154 (383)
Q Consensus 75 ~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (383)
+.+|+|.+.+|+|.-||+.+++... .+
T Consensus 80 -~~RLFS~g~sg~i~EwDl~~lk~~~----~~------------------------------------------------ 106 (691)
T KOG2048|consen 80 -GGRLFSSGLSGSITEWDLHTLKQKY----NI------------------------------------------------ 106 (691)
T ss_pred -CCeEEeecCCceEEEEecccCceeE----Ee------------------------------------------------
Confidence 5789999999999999997653110 00
Q ss_pred cCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEE
Q 016769 155 SNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 234 (383)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (383)
-..| .-||.+.- .|++ ..+.
T Consensus 107 -------------------d~~g-----g~IWsiai--------------------------------~p~~----~~l~ 126 (691)
T KOG2048|consen 107 -------------------DSNG-----GAIWSIAI--------------------------------NPEN----TILA 126 (691)
T ss_pred -------------------cCCC-----cceeEEEe--------------------------------CCcc----ceEE
Confidence 0000 11243210 0000 1245
Q ss_pred EEeCCCcEEEEeCCCCCCce-eeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee---c-CCCC
Q 016769 235 AGYEDGSILVWDIRNPGIPL-TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN---L-ERPG 309 (383)
Q Consensus 235 sg~~dg~i~~wdl~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~---~-~~~~ 309 (383)
.|++||.+..+++..+.... ..+......+.+++|++++..++.|+.||.|++||....+.......... . +.--
T Consensus 127 IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~i 206 (691)
T KOG2048|consen 127 IGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTI 206 (691)
T ss_pred eecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceE
Confidence 67778866666665432211 12333457899999999998899999999999999987654432221111 1 1122
Q ss_pred eEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+.++.|-.++ .||+|.+-|+|.+||...+..+..++.|.+.|.+++-.+++.++++++.|+.|.-+...
T Consensus 207 VWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 207 VWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred EEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 5667766554 78999999999999999999999999999999999999999999999999999877654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=146.01 Aligned_cols=186 Identities=15% Similarity=0.228 Sum_probs=135.2
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
..++|+..++|+|||++...+...+.. +...+.++. |. +...++++++..|.|.|..+.+...
T Consensus 93 y~~sgG~~~~Vkiwdl~~kl~hr~lkd----------h~stvt~v~---YN----~~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 93 YEISGGQSGCVKIWDLRAKLIHRFLKD----------HQSTVTYVD---YN----NTDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred eeeccCcCceeeehhhHHHHHhhhccC----------CcceeEEEE---ec----CCcceeEEeccCCcEEEEecccCcc
Confidence 345667789999999985444333332 222332221 21 2233688899999999999887433
Q ss_pred ceeeeecc-ccCeEEEEEeCCCCce-EEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC-cEEEEEeCCC
Q 016769 253 PLTAMKVH-LEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KIAATAGWDR 329 (383)
Q Consensus 253 ~~~~~~~h-~~~v~~~~~~~~~~~~-~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~l~s~~~dg 329 (383)
...++.. ...|+-+.+++..+.+ .+++.+|.|.+||.+.......+ .+.|.....+++|+|.. ..|++.+.|+
T Consensus 156 -tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~---~~~HsAP~~gicfspsne~l~vsVG~Dk 231 (673)
T KOG4378|consen 156 -TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA---SEAHSAPCRGICFSPSNEALLVSVGYDK 231 (673)
T ss_pred -ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch---hhhccCCcCcceecCCccceEEEecccc
Confidence 2334433 3456788888887764 56788999999999865433222 34566678899999865 5899999999
Q ss_pred cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 330 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 330 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+|.+||....+...++- +..+..+|+|+++|-+|+.|+..|.|..||+..
T Consensus 232 ki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 232 KINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred eEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 99999998777766663 566889999999999999999999999999964
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-17 Score=141.76 Aligned_cols=298 Identities=19% Similarity=0.220 Sum_probs=185.2
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccc---cccc--cccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSS--SWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
-+.+|++-|++|.|+.++++|+||+.|.+++||++.+.. .... +..|.+-..+.+++|.. +...+.+|+.+++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~--~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL--ENRFLYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc--CCeeEecCCCcce
Confidence 467999999999999999999999999999999986531 1122 22333334688888875 4567889999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
|.+.|+++.+.+. +.. .. .....+|. +. .++
T Consensus 129 VI~HDiEt~qsi~-----V~~-------------~~------~~~~~VY~------------------------m~-~~P 159 (609)
T KOG4227|consen 129 VIKHDIETKQSIY-----VAN-------------EN------NNRGDVYH------------------------MD-QHP 159 (609)
T ss_pred eEeeecccceeee-----eec-------------cc------Ccccceee------------------------cc-cCC
Confidence 9999998764211 000 00 00000110 00 112
Q ss_pred CCCceeeeccCCcceEEEEecCCCC-eeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
.. ..++++ +.++.|.+||.+..+ .+..+-. ...+.- ....-|.|.. ...+++.+..+-+-+||
T Consensus 160 ~D-N~~~~~-t~~~~V~~~D~Rd~~~~~~~~~~---------AN~~~~--F~t~~F~P~~---P~Li~~~~~~~G~~~~D 223 (609)
T KOG4227|consen 160 TD-NTLIVV-TRAKLVSFIDNRDRQNPISLVLP---------ANSGKN--FYTAEFHPET---PALILVNSETGGPNVFD 223 (609)
T ss_pred CC-ceEEEE-ecCceEEEEeccCCCCCCceeee---------cCCCcc--ceeeeecCCC---ceeEEeccccCCCCcee
Confidence 22 223433 557899999997755 2211100 000111 1111244432 23567788888999999
Q ss_pred CCCCCCceee------eeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeec----CCCCeEEEEEC
Q 016769 247 IRNPGIPLTA------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL----ERPGISGTSIR 316 (383)
Q Consensus 247 l~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~----~~~~i~~~~~~ 316 (383)
++.+..++.. ++.....-...-|++.+..+++--...--.+||+-...+.. ++..... ....+.+++|-
T Consensus 224 ~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V-~k~D~N~~GY~N~~T~KS~~F~ 302 (609)
T KOG4227|consen 224 RRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV-LKSDHNPNGYCNIKTIKSMTFI 302 (609)
T ss_pred eccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccccee-EeccCCCCcceeeeeeeeeeee
Confidence 9987554321 11111111345678888888776555555677876433222 2111111 11124456675
Q ss_pred CCCcEEEEEeCCCcEEEEEcCC----------C-------------ceEEEecccccceeEEEEeCCCCEEEEEeCCCcE
Q 016769 317 PDSKIAATAGWDRRVRIYNYRK----------G-------------SALAILKYHHATCNAVSFSSDCKLMASASEDSTV 373 (383)
Q Consensus 317 p~~~~l~s~~~dg~i~iwd~~~----------~-------------~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i 373 (383)
+...+++|+.+-.|++|.+.. | +.+..+++|..-++.|.|+|-..+|++.+-...+
T Consensus 303 -~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~ 381 (609)
T KOG4227|consen 303 -DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSF 381 (609)
T ss_pred -cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhhe
Confidence 344599999999999998843 1 1245788999999999999999999999999999
Q ss_pred EEEeCC
Q 016769 374 ALWELY 379 (383)
Q Consensus 374 ~~w~~~ 379 (383)
+||.-+
T Consensus 382 KlWS~~ 387 (609)
T KOG4227|consen 382 KLWSDH 387 (609)
T ss_pred eccccc
Confidence 999654
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=132.92 Aligned_cols=152 Identities=22% Similarity=0.323 Sum_probs=112.9
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
++.+++-|.++++||..+-+..-.+..+..+.+-..++ +.+. ...+++|..|-+|++-|+.++.
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp----~a~s-----------HcLiA~gtr~~~VrLCDi~SGs- 179 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSP----MAMS-----------HCLIAAGTRDVQVRLCDIASGS- 179 (397)
T ss_pred eeecccccceEEEeecccceeeEEeecCceeehhhcCh----hhhc-----------ceEEEEecCCCcEEEEeccCCc-
Confidence 45677889999999999988666665544433322111 1110 0146678999999999999854
Q ss_pred ceeeeeccccCeEEEEEeCCCCc-eEEEEcCCcEEEEEccCCCCeeE-Ee----------eeeecCCCCeEEEEECCCCc
Q 016769 253 PLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSCV-IK----------KEINLERPGISGTSIRPDSK 320 (383)
Q Consensus 253 ~~~~~~~h~~~v~~~~~~~~~~~-~~s~~~d~~i~~wdl~~~~~~~~-~~----------~~~~~~~~~i~~~~~~p~~~ 320 (383)
..+.+.+|...|..+.|+|.... +++|+.|++|++||++.-++-.. +. +.-..+.+.+++++|+.++.
T Consensus 180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence 46889999999999999998885 68999999999999975432211 11 11123556799999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCc
Q 016769 321 IAATAGWDRRVRIYNYRKGS 340 (383)
Q Consensus 321 ~l~s~~~dg~i~iwd~~~~~ 340 (383)
++++.+.|.++++|+..+|+
T Consensus 260 ~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 260 YLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred hhhhccCccceEEeecccCc
Confidence 99999999999999998764
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-16 Score=143.52 Aligned_cols=303 Identities=17% Similarity=0.240 Sum_probs=186.7
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
.++...+..-.+.|++||.+|.++.|+.|++||.+...+...++.............+.++.+.++ +.++++|+.||.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~--~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT--GTKIAGGSIDGV 177 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCC--ccEEEecccCce
Confidence 345556666678999999999999999999999888777665543322111123357889999984 577999999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
||+||+..+... .+.+.+ ..-.... .+ +......+-.
T Consensus 178 Iriwd~~~~~t~-----~~~~~~-----~d~l~k~--------~~-------------------------~iVWSv~~Lr 214 (691)
T KOG2048|consen 178 IRIWDVKSGQTL-----HIITMQ-----LDRLSKR--------EP-------------------------TIVWSVLFLR 214 (691)
T ss_pred EEEEEcCCCceE-----EEeeec-----ccccccC--------Cc-------------------------eEEEEEEEee
Confidence 999999876421 110000 0000000 00 0000001112
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
++ .+++|+..|+|++||-.++.++.... .++..++|+++.. ....+++++.|+.|..+..
T Consensus 215 d~---tI~sgDS~G~V~FWd~~~gTLiqS~~----------~h~adVl~Lav~~-------~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 215 DS---TIASGDSAGTVTFWDSIFGTLIQSHS----------CHDADVLALAVAD-------NEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred cC---cEEEecCCceEEEEcccCcchhhhhh----------hhhcceeEEEEcC-------CCCeEEEccCCCceEEEEe
Confidence 22 45778888999999998887654432 1234567776531 2236889999999999887
Q ss_pred CCCCC---ceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCC------------------------------
Q 016769 248 RNPGI---PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST------------------------------ 294 (383)
Q Consensus 248 ~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~------------------------------ 294 (383)
...+. .......|...|++|++-+. .+++||.|.++.+-......
T Consensus 275 ~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~ 352 (691)
T KOG2048|consen 275 TTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKA 352 (691)
T ss_pred cCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecc
Confidence 65432 12234568888888888654 56788888777664332100
Q ss_pred ------------------CeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEc--------------------
Q 016769 295 ------------------GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY-------------------- 336 (383)
Q Consensus 295 ------------------~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~-------------------- 336 (383)
-..+++ ....+...|.+.+.+|+|+.++.+. =.+.+||.+
T Consensus 353 h~v~lwrlGS~~~~g~~~~~~Llk-l~~k~~~nIs~~aiSPdg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~ 430 (691)
T KOG2048|consen 353 HGVDLWRLGSVILQGEYNYIHLLK-LFTKEKENISCAAISPDGNLIAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLD 430 (691)
T ss_pred ccccceeccCcccccccChhhhee-eecCCccceeeeccCCCCCEEEEee-ccceEEEEeccCcceeEEEeccchhhhcc
Confidence 000000 0011223478889999999888766 112223322
Q ss_pred ----------------------------CCC--ceEEEe--cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 337 ----------------------------RKG--SALAIL--KYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 337 ----------------------------~~~--~~~~~~--~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.++ +.+..+ ++-...|..+..||||+++|..+.++.|.+||+.
T Consensus 431 a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~ 505 (691)
T KOG2048|consen 431 ASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLE 505 (691)
T ss_pred ceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcc
Confidence 111 111111 1234568889999999999999999999999985
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-18 Score=160.70 Aligned_cols=147 Identities=16% Similarity=0.264 Sum_probs=121.2
Q ss_pred EEEEEeCCCcEEEEeCCCCC--CceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC
Q 016769 232 NVLAGYEDGSILVWDIRNPG--IPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~--~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
.+++++..|.|-+||+.... ..+..++.|...+.++.|++.-. .+++|+.|+.|++||++........ .....
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~----~~nSE 177 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF----RSNSE 177 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc----cccch
Confidence 57789999999999997632 23456789999999999977654 5789999999999999865433222 22446
Q ss_pred CeEEEEECCC-CcEEEEEeCCCcEEEEEcCCCce-EEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q 016769 309 GISGTSIRPD-SKIAATAGWDRRVRIYNYRKGSA-LAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 382 (383)
Q Consensus 309 ~i~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~~ 382 (383)
.|..+.|+|. +.+|+++...|.+++||++...+ ...+.+|.++|.|+.|+|++.+|||||+|++|+|||+.+++
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 7999999985 56899999999999999987643 45677999999999999999999999999999999998665
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=150.83 Aligned_cols=263 Identities=21% Similarity=0.379 Sum_probs=160.5
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccc--------cccccccccccceeeeeeecCCCCcceeEe
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--------TVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 81 (383)
+..+++.|.+.|++++|+|....|++++.||.+++|++.... .+..+..|. ..|.|++... ++..+.+
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~--gPVl~v~v~~--n~~~~ys 361 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE--GPVLCVVVPS--NGEHCYS 361 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEeccc--CceEEEEecC--CceEEEe
Confidence 445899999999999999999999999999999999983211 122223333 4578888876 4789999
Q ss_pred cccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccce
Q 016769 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEI 161 (383)
Q Consensus 82 ~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (383)
||-||+||.|++....- ++. .++ .....
T Consensus 362 gg~Dg~I~~w~~p~n~d-----------------------p~d----------s~d----p~vl~--------------- 389 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQD-----------------------PDD----------SYD----PSVLS--------------- 389 (577)
T ss_pred eccCceeeeeccCCCCC-----------------------ccc----------ccC----cchhc---------------
Confidence 99999999999862210 000 000 00000
Q ss_pred ecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCc
Q 016769 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 241 (383)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~ 241 (383)
+ .+ .|-. =.+|-+ .++. ...++++|+.||+
T Consensus 390 -------~--~l--~Ght---davw~l--------------------------------~~s~----~~~~Llscs~DgT 419 (577)
T KOG0642|consen 390 -------G--TL--LGHT---DAVWLL--------------------------------ALSS----TKDRLLSCSSDGT 419 (577)
T ss_pred -------c--ce--eccc---cceeee--------------------------------eecc----cccceeeecCCce
Confidence 0 00 0110 011211 0100 0114777888888
Q ss_pred EEEEeCCCCCCc-eeeeeccccCeEEEEEeCCCCceEEEEcCCcEEE---EEccCCCCeeEEeeee---ecCCCCeEEEE
Q 016769 242 ILVWDIRNPGIP-LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL---YNLDHSTGSCVIKKEI---NLERPGISGTS 314 (383)
Q Consensus 242 i~~wdl~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~---wdl~~~~~~~~~~~~~---~~~~~~i~~~~ 314 (383)
+++|+......+ +...+.|. .-..+.+-.+....+. .+.+... ++++..+....+.... ......++-+.
T Consensus 420 vr~w~~~~~~~~~f~~~~e~g-~Plsvd~~ss~~a~~~--~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV 496 (577)
T KOG0642|consen 420 VRLWEPTEESPCTFGEPKEHG-YPLSVDRTSSRPAHSL--ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV 496 (577)
T ss_pred EEeeccCCcCccccCCccccC-CcceEeeccchhHhhh--hhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence 888876543221 11112222 2233433222111111 1222222 2222211111110000 00113466777
Q ss_pred ECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 315 IRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 315 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
.+|...+.+++..|+.|++||..+++.+.....|...+.++++-|+|.+|++|+.||.|++|++..+
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 8899999999999999999999999999888899999999999999999999999999999998644
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-17 Score=136.23 Aligned_cols=205 Identities=20% Similarity=0.367 Sum_probs=145.9
Q ss_pred CeeeeeecCCceeeEEEeCCCC--eEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 10 PVAVLRGHRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~--~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
....|..|.+.|+++.|.++.. .|+||++||.|.+|++..=.++..++.|. +.+..+++.|+ +...+|.|.|++
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~--~~Vt~lsiHPS--~KLALsVg~D~~ 150 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHK--GQVTDLSIHPS--GKLALSVGGDQV 150 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccc--cccceeEecCC--CceEEEEcCCce
Confidence 4567889999999999998876 89999999999999998777777777765 34888999995 456679999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
+|+||+-+|+... + ..+ +... -...+.+
T Consensus 151 lr~WNLV~Gr~a~-------------v-~~L-~~~a-------------------------------------t~v~w~~ 178 (362)
T KOG0294|consen 151 LRTWNLVRGRVAF-------------V-LNL-KNKA-------------------------------------TLVSWSP 178 (362)
T ss_pred eeeehhhcCccce-------------e-ecc-CCcc-------------------------------------eeeEEcC
Confidence 9999998774210 0 000 0000 0011223
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
.|.+|.+ .+. +.|-+|.+++......+.. +.+.+|... .. ...+++|..|+.|++||.
T Consensus 179 ~Gd~F~v-~~~--~~i~i~q~d~A~v~~~i~~-----------~~r~l~~~~---l~-----~~~L~vG~d~~~i~~~D~ 236 (362)
T KOG0294|consen 179 QGDHFVV-SGR--NKIDIYQLDNASVFREIEN-----------PKRILCATF---LD-----GSELLVGGDNEWISLKDT 236 (362)
T ss_pred CCCEEEE-Eec--cEEEEEecccHhHhhhhhc-----------cccceeeee---cC-----CceEEEecCCceEEEecc
Confidence 4444433 332 4789999887654333321 124444332 11 125889999999999998
Q ss_pred CCCCCceeeeeccccCeEEEEE--eCCCCceEEEEcCCcEEEEEccCC
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHS 293 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~s~~~d~~i~~wdl~~~ 293 (383)
.+ ..+...+.+|...|..+.+ .+..-++++++.||.|++||++..
T Consensus 237 ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 237 DS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 76 5678889999999999885 566668899999999999999754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-17 Score=144.94 Aligned_cols=188 Identities=21% Similarity=0.339 Sum_probs=140.4
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
++|. -|+++|. -.++-||||.......+.+-.. ....|.++ +..| +.+..++|..||.|.|||
T Consensus 475 pdgr-tLivGGe-astlsiWDLAapTprikaelts----------sapaCyAL-a~sp----DakvcFsccsdGnI~vwD 537 (705)
T KOG0639|consen 475 PDGR-TLIVGGE-ASTLSIWDLAAPTPRIKAELTS----------SAPACYAL-AISP----DAKVCFSCCSDGNIAVWD 537 (705)
T ss_pred CCCc-eEEeccc-cceeeeeeccCCCcchhhhcCC----------cchhhhhh-hcCC----ccceeeeeccCCcEEEEE
Confidence 4554 4666666 5799999998876432222100 01112221 1222 233567899999999999
Q ss_pred CCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEe
Q 016769 247 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 326 (383)
Q Consensus 247 l~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~ 326 (383)
|.+ ...++.+++|.+.+.|+.++.++..+-+||-|++++.||++.. +..+.. -..+.|.++...|++..++.|=
T Consensus 538 Lhn-q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlreg--rqlqqh---dF~SQIfSLg~cP~~dWlavGM 611 (705)
T KOG0639|consen 538 LHN-QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG--RQLQQH---DFSSQIFSLGYCPTGDWLAVGM 611 (705)
T ss_pred ccc-ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhh--hhhhhh---hhhhhheecccCCCccceeeec
Confidence 997 4557889999999999999999999999999999999999743 222211 1235688899999999999999
Q ss_pred CCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 327 WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
.++.+-+......+.+ .+--|+..|.++.|++-|+++++.+.|+.+..|..
T Consensus 612 ens~vevlh~skp~ky-qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 612 ENSNVEVLHTSKPEKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred ccCcEEEEecCCccce-eecccccEEEEEEecccCceeeecCchhhhhhccC
Confidence 9999888777655544 55569999999999999999999999999999976
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-16 Score=134.20 Aligned_cols=116 Identities=21% Similarity=0.374 Sum_probs=93.7
Q ss_pred ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcC-
Q 016769 259 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR- 337 (383)
Q Consensus 259 ~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~- 337 (383)
.|.-++..+.+...+.++++++.|..|.+|++..+ .+ ..+...+..-...+++|+|+++|+++.---|++|.+-
T Consensus 185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq---~L--~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f 259 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ---LL--QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIF 259 (420)
T ss_pred hcccceEEEeecCCceEEEEecCCCcEEEEecCCc---ee--eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence 45667777777777888999999999999999732 22 2233333445667899999999999999999999983
Q ss_pred --CCc-----eEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 338 --KGS-----ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 338 --~~~-----~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+|. .+..++||+..|.+++|||+...++|.|.||.++|||..
T Consensus 260 ~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 260 TKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 332 345788999999999999999999999999999999974
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=158.74 Aligned_cols=249 Identities=21% Similarity=0.384 Sum_probs=169.3
Q ss_pred CceeeEEEeCCCCe----EEEecCCCeEEEeeCccc---cc---ccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 19 ASVTDVCFHQTKPI----LFAGTTGGELRIWDTVQH---RT---VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 19 ~~V~~v~f~~~~~~----L~sgs~D~~v~vW~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
..-+.++|.+.|+. ||.|.+||.|.+||...- .. +.....|. +.|..+.|.+. .++.|+||++||.|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~--G~V~gLDfN~~-q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT--GPVLGLDFNPF-QGNLLASGADDGEI 141 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC--Cceeeeecccc-CCceeeccCCCCcE
Confidence 34577888887665 999999999999997542 11 12222332 45777888875 56799999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
.|||+.+.+..-.+. . . .-...+....+.. ++
T Consensus 142 ~iWDlnn~~tP~~~~------~-----------~-------~~~~eI~~lsWNr-----------------kv------- 173 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPG------S-----------Q-------APPSEIKCLSWNR-----------------KV------- 173 (1049)
T ss_pred EEeccCCcCCCCCCC------C-----------C-------CCcccceEeccch-----------------hh-------
Confidence 999998754211100 0 0 0000000001100 00
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC---cEEEE
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVW 245 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg---~i~~w 245 (383)
.-++++++.++.+-|||++..+.+..+.. ...+.+|..+ .+.|+.. ..++++++|. .|.+|
T Consensus 174 --qhILAS~s~sg~~~iWDlr~~~pii~ls~----------~~~~~~~S~l-~WhP~~a---Tql~~As~dd~~PviqlW 237 (1049)
T KOG0307|consen 174 --SHILASGSPSGRAVIWDLRKKKPIIKLSD----------TPGRMHCSVL-AWHPDHA---TQLLVASGDDSAPVIQLW 237 (1049)
T ss_pred --hHHhhccCCCCCceeccccCCCccccccc----------CCCccceeee-eeCCCCc---eeeeeecCCCCCceeEee
Confidence 11455667778999999999887665532 1223445444 4666543 3466666555 48999
Q ss_pred eCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEE
Q 016769 246 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 325 (383)
Q Consensus 246 dl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~ 325 (383)
|+|....+++.+++|...|.+++|.+. |..+++++
T Consensus 238 DlR~assP~k~~~~H~~GilslsWc~~---------------------------------------------D~~lllSs 272 (1049)
T KOG0307|consen 238 DLRFASSPLKILEGHQRGILSLSWCPQ---------------------------------------------DPRLLLSS 272 (1049)
T ss_pred cccccCCchhhhcccccceeeeccCCC---------------------------------------------Cchhhhcc
Confidence 998877777777777766666655432 33678888
Q ss_pred eCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 326 GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 326 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
+.|++|.+|+.++++.+..+....+++..+.|+|... .++.++-||.|.|+.+.
T Consensus 273 gkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 273 GKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred cCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 8999999999999999998887788999999999887 89999999999999874
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.9e-16 Score=129.93 Aligned_cols=284 Identities=18% Similarity=0.222 Sum_probs=179.8
Q ss_pred eEEEeCCCCeEEEecCCCeEEEeeCccc----c----ccccc--ccccc-cceeeeeeec-----CCCCcceeEecccCC
Q 016769 23 DVCFHQTKPILFAGTTGGELRIWDTVQH----R----TVSSS--WVHSA-AHGIVSVATG-----PSIGLNKVISQGRDG 86 (383)
Q Consensus 23 ~v~f~~~~~~L~sgs~D~~v~vW~~~~~----~----~~~~~--~~~~~-~~~~~~~~~~-----~~~~~~~l~s~~~D~ 86 (383)
.+.++|||..|++-++|..+++|++... + ..... ..+.. +.-+...++. .....+.+++.+.|.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 4578999999999999999999997431 1 11110 01111 1112233332 112346788899999
Q ss_pred eEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 87 ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
-|++||.-+|+... +++.+ . ... +. .......++
T Consensus 134 PIh~wdaftG~lra---------Sy~~y--d---h~d------------------e~--------------taAhsL~Fs 167 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRA---------SYRAY--D---HQD------------------EY--------------TAAHSLQFS 167 (406)
T ss_pred ceeeeecccccccc---------chhhh--h---hHH------------------hh--------------hhheeEEec
Confidence 99999998875311 00000 0 000 00 011123456
Q ss_pred CCCCceeeeccCCcceEEEEec-CCCCe--eeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDL-NTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl-~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
++|.++ ++ | ..+.||++|+ +.+.. +....... .+.-.+ +.+..+|.|.... .+..|+...++-
T Consensus 168 ~DGeql-fa-G-ykrcirvFdt~RpGr~c~vy~t~~~~-----k~gq~g---iisc~a~sP~~~~---~~a~gsY~q~~g 233 (406)
T KOG2919|consen 168 PDGEQL-FA-G-YKRCIRVFDTSRPGRDCPVYTTVTKG-----KFGQKG---IISCFAFSPMDSK---TLAVGSYGQRVG 233 (406)
T ss_pred CCCCeE-ee-c-ccceEEEeeccCCCCCCcchhhhhcc-----cccccc---eeeeeeccCCCCc---ceeeecccceee
Confidence 777654 32 3 4679999999 44331 11111000 111122 2333446665432 356688888888
Q ss_pred EEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEc-CCcEEEEEccCCCCeeEEeeeeecCC---CCeEEEEECCCC
Q 016769 244 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLER---PGISGTSIRPDS 319 (383)
Q Consensus 244 ~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~~~~~~~~~---~~i~~~~~~p~~ 319 (383)
|+.-.. ..|+..+-+|..-|+.+.|.++++.+++|+. |..|..||++..... + ..+..+. +.---+.+.|++
T Consensus 234 iy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p-v--~~L~rhv~~TNQRI~FDld~~~ 309 (406)
T KOG2919|consen 234 IYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP-V--YALERHVGDTNQRILFDLDPKG 309 (406)
T ss_pred eEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch-h--hhhhhhccCccceEEEecCCCC
Confidence 876443 5678888899999999999999999998874 778999999753211 1 1112221 222345567999
Q ss_pred cEEEEEeCCCcEEEEEcCC-CceEEEecccccceeEEEEeCCCCEEEEEeCC
Q 016769 320 KIAATAGWDRRVRIYNYRK-GSALAILKYHHATCNAVSFSSDCKLMASASED 370 (383)
Q Consensus 320 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~v~~spd~~~las~s~d 370 (383)
+.|++|+.||.|++||+.+ +.....+..|...|+.|+++|--+++|++|..
T Consensus 310 ~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 310 EILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 9999999999999999988 77777888899999999999998899998865
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.4e-16 Score=149.90 Aligned_cols=308 Identities=16% Similarity=0.273 Sum_probs=179.0
Q ss_pred CeeeeeecCCceeeEEEeCCC-CeEEEecCCCeEEEeeCcccccc---cc--cccccccceeeeeeecCCCCcceeEecc
Q 016769 10 PVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTV---SS--SWVHSAAHGIVSVATGPSIGLNKVISQG 83 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~-~~L~sgs~D~~v~vW~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (383)
.++.|+.|+..|..++.+++. .+++|||.||+||+||...-..- .. +.-+.....+.++.... ++..++.++
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~--~~~~~Av~t 1117 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG--NGDQFAVST 1117 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc--CCCeEEEEc
Confidence 567899999999999998765 89999999999999997432111 11 00111223456666665 357889889
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
.||.|++.+++.-+.... .+..... +.. .. . +...-+.
T Consensus 1118 ~DG~v~~~~id~~~~~~~-----------~~~~~ri--~n~-------~~------~----------------g~vv~m~ 1155 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKR-----------VATQVRI--PNL-------KK------D----------------GVVVSMH 1155 (1431)
T ss_pred CCCeEEEEEccccccccc-----------eeeeeec--ccc-------cC------C----------------CceEEee
Confidence 999999999864211000 0000000 000 00 0 0000011
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
.+....+..+++.+...+-|-.||++....+.+++.+. ..|++.++. .+ ....++++|+..|.+.
T Consensus 1156 a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~----------~hG~vTSi~---id--p~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1156 AFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL----------RHGLVTSIV---ID--PWCNWLVIGTSRGQLV 1220 (1431)
T ss_pred cccccccceeEEEEEeccceEEecchhhhhHHhhhcCc----------cccceeEEE---ec--CCceEEEEecCCceEE
Confidence 11111111133444555678999998876555554321 123333322 11 1234799999999999
Q ss_pred EEeCCCCCCceeeee-ccccCeEEEEEeCCCC---ceEEEE--cCCcEEEEEccCCCCeeEEeee-----ee----cC--
Q 016769 244 VWDIRNPGIPLTAMK-VHLEPVLCLSIDESCN---GGISGG--ADQKIVLYNLDHSTGSCVIKKE-----IN----LE-- 306 (383)
Q Consensus 244 ~wdl~~~~~~~~~~~-~h~~~v~~~~~~~~~~---~~~s~~--~d~~i~~wdl~~~~~~~~~~~~-----~~----~~-- 306 (383)
+||+|- +.++...+ .+..++..+..++... ..++++ ..+.+.+|++..+.++..+... +. ..
T Consensus 1221 lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~ 1299 (1431)
T KOG1240|consen 1221 LWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDA 1299 (1431)
T ss_pred EEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccC
Confidence 999996 34443332 3345777777766554 233333 4677999999877655444321 00 00
Q ss_pred --CCC--eEEEEECCCCcEEEEEeCCCcEEEEEcCCCce-----------------------------------------
Q 016769 307 --RPG--ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA----------------------------------------- 341 (383)
Q Consensus 307 --~~~--i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~----------------------------------------- 341 (383)
... .....+..-+.++.+|+.|.+||.||......
T Consensus 1300 ~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~ 1379 (1431)
T KOG1240|consen 1300 RKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVG 1379 (1431)
T ss_pred CCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcC
Confidence 000 11122333345899999999999999853210
Q ss_pred -------EE--------EecccccceeEEEEeCC-CCEEEEEeCCCcEEEEe
Q 016769 342 -------LA--------ILKYHHATCNAVSFSSD-CKLMASASEDSTVALWE 377 (383)
Q Consensus 342 -------~~--------~~~~h~~~v~~v~~spd-~~~las~s~d~~i~~w~ 377 (383)
.. .-.+|...|.++++.-. ..+|+++++||.|+||.
T Consensus 1380 ~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1380 LTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred chhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 11257778888887543 35999999999999994
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-15 Score=129.68 Aligned_cols=140 Identities=20% Similarity=0.279 Sum_probs=106.8
Q ss_pred EEEEEeCCCcEEEEeCCCC-CCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 232 NVLAGYEDGSILVWDIRNP-GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
.+++|+-||+|+|||+|+. ..+.-..+.|...|+.++|+.....+++|+.||+++||||+..+... -....+.|...|
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~-pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ-PVATFKYHKAPI 350 (440)
T ss_pred eEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC-cceeEEeccCCe
Confidence 4678999999999999975 22333448999999999998888888999999999999997644321 113456788899
Q ss_pred EEEEECCCC-cEEEEEeCCCcEEEEEcCCC-------------------ceEEEecccccceeEEEEeCCCC-EEEEEeC
Q 016769 311 SGTSIRPDS-KIAATAGWDRRVRIYNYRKG-------------------SALAILKYHHATCNAVSFSSDCK-LMASASE 369 (383)
Q Consensus 311 ~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~v~~spd~~-~las~s~ 369 (383)
+++.|+|.. ..|++++.|..|.|||+..- +.+...+ -++.+..+.|++.-+ +|++.+.
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~ 429 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAI 429 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecc
Confidence 999999864 67888999999999999421 0111212 134688899998766 8999999
Q ss_pred CCcE
Q 016769 370 DSTV 373 (383)
Q Consensus 370 d~~i 373 (383)
||.-
T Consensus 430 dGfn 433 (440)
T KOG0302|consen 430 DGFN 433 (440)
T ss_pred ccee
Confidence 9843
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=145.73 Aligned_cols=183 Identities=21% Similarity=0.297 Sum_probs=138.9
Q ss_pred eeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC
Q 016769 172 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~ 251 (383)
.++++- ...|.+|+-.++........+ .....++ .+.++ ..++++|..+|.|.|||..+..
T Consensus 190 ~laVal--g~~vylW~~~s~~v~~l~~~~------------~~~vtSv-~ws~~----G~~LavG~~~g~v~iwD~~~~k 250 (484)
T KOG0305|consen 190 VLAVAL--GQSVYLWSASSGSVTELCSFG------------EELVTSV-KWSPD----GSHLAVGTSDGTVQIWDVKEQK 250 (484)
T ss_pred eEEEEe--cceEEEEecCCCceEEeEecC------------CCceEEE-EECCC----CCEEEEeecCCeEEEEehhhcc
Confidence 444442 247999999887732222210 1111122 23332 2368899999999999987644
Q ss_pred Cceeeeec-cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCc
Q 016769 252 IPLTAMKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 330 (383)
Q Consensus 252 ~~~~~~~~-h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~ 330 (383)
. +..+.+ |...|-++++.. ..+.+|+.|+.|..+|+....... . .+..|...|+++.+++|++++|+|+.|+.
T Consensus 251 ~-~~~~~~~h~~rvg~laW~~--~~lssGsr~~~I~~~dvR~~~~~~--~-~~~~H~qeVCgLkws~d~~~lASGgnDN~ 324 (484)
T KOG0305|consen 251 K-TRTLRGSHASRVGSLAWNS--SVLSSGSRDGKILNHDVRISQHVV--S-TLQGHRQEVCGLKWSPDGNQLASGGNDNV 324 (484)
T ss_pred c-cccccCCcCceeEEEeccC--ceEEEecCCCcEEEEEEecchhhh--h-hhhcccceeeeeEECCCCCeeccCCCccc
Confidence 3 556667 899999999983 457889999999999997654222 1 24567788999999999999999999999
Q ss_pred EEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEE--EeCCCcEEEEeCC
Q 016769 331 VRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMAS--ASEDSTVALWELY 379 (383)
Q Consensus 331 i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las--~s~d~~i~~w~~~ 379 (383)
+.|||.....+...+..|.++|.+++|+|-.+ .||+ |+.|++|++||..
T Consensus 325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~ 376 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN 376 (484)
T ss_pred eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC
Confidence 99999988888889999999999999999655 8888 5689999999975
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=136.47 Aligned_cols=264 Identities=17% Similarity=0.247 Sum_probs=169.0
Q ss_pred ceeeEEEeCCC-CeEEEecCCCeEEEeeCccccc-ccccc-cccccceeeeeeecCCCCcceeEecccCCeEEEeecCCC
Q 016769 20 SVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRT-VSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (383)
Q Consensus 20 ~V~~v~f~~~~-~~L~sgs~D~~v~vW~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~ 96 (383)
.|.++++.... -.+++.+.|..+++|.-..... +..+. .... .-.|++... ...++++||..++|+|||+...
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~k 111 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACAS--QSLYEISGGQSGCVKIWDLRAK 111 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhh--cceeeeccCcCceeeehhhHHH
Confidence 37888887654 3567778889999998643311 11111 0111 112222221 2367899999999999999743
Q ss_pred CCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeec
Q 016769 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVA 176 (383)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (383)
.+.+ ....|.. .++ ... +.....| +++
T Consensus 112 l~hr-------~lkdh~s--tvt-----------------~v~--------------------------YN~~Dey-iAs 138 (673)
T KOG4378|consen 112 LIHR-------FLKDHQS--TVT-----------------YVD--------------------------YNNTDEY-IAS 138 (673)
T ss_pred HHhh-------hccCCcc--eeE-----------------EEE--------------------------ecCCcce-eEE
Confidence 2111 0000000 000 000 0000123 445
Q ss_pred cCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceee
Q 016769 177 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 256 (383)
Q Consensus 177 g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~ 256 (383)
++..|.|.|..+.+++....+..+. +. ..-...|.+.. +..+.+++++|.|.+||..........
T Consensus 139 vs~gGdiiih~~~t~~~tt~f~~~s----------gq--svRll~ys~sk---r~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 139 VSDGGDIIIHGTKTKQKTTTFTIDS----------GQ--SVRLLRYSPSK---RFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred eccCCcEEEEecccCccccceecCC----------CC--eEEEeeccccc---ceeeEeeccCCeEEEEeccCCCcccch
Confidence 5667788888888877655443211 11 11122344432 235778999999999998764444556
Q ss_pred eeccccCeEEEEEeCCCCc-eEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEE
Q 016769 257 MKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 335 (383)
Q Consensus 257 ~~~h~~~v~~~~~~~~~~~-~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd 335 (383)
.+.|..|...++|+|.... +++.|.|..|.+||+..+...- .+.+ ....+.++|.++|.+|++|...|+|..||
T Consensus 204 ~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 204 SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----RLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred hhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----eeee-cCCcceeeecCCceEEEeecCCceEEEEe
Confidence 6789999999999988764 5788999999999987543221 2222 24578999999999999999999999999
Q ss_pred cCC-CceEEEecccccceeEEEEeCC
Q 016769 336 YRK-GSALAILKYHHATCNAVSFSSD 360 (383)
Q Consensus 336 ~~~-~~~~~~~~~h~~~v~~v~~spd 360 (383)
++. ..++.++..|...|.+|+|-|.
T Consensus 279 ~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 279 MRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cccCCCCceEeeecccceeEEEeeec
Confidence 975 5678888999999999999875
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=140.40 Aligned_cols=268 Identities=18% Similarity=0.226 Sum_probs=153.9
Q ss_pred EEEeC---CCCeEEEecCCCeEEEeeCccccc------ccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecC
Q 016769 24 VCFHQ---TKPILFAGTTGGELRIWDTVQHRT------VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (383)
Q Consensus 24 v~f~~---~~~~L~sgs~D~~v~vW~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~ 94 (383)
..|++ ....||-+-+||.|.++|...... +.....|.. .+.-+.+.| +...|++++.|.|+|+||++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~n--AifDl~wap--ge~~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKN--AIFDLKWAP--GESLLVSASGDSTIRPWDVK 130 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccc--eeEeeccCC--CceeEEEccCCceeeeeeec
Confidence 45543 346899999999999999754221 111112322 244455555 56789999999999999998
Q ss_pred CCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceee
Q 016769 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMA 174 (383)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (383)
+.++...-... | +...... ..+.+.. +.++
T Consensus 131 ~s~l~G~~~~~-----------------------------------G----------H~~SvkS----~cf~~~n-~~vF 160 (720)
T KOG0321|consen 131 TSRLVGGRLNL-----------------------------------G----------HTGSVKS----ECFMPTN-PAVF 160 (720)
T ss_pred cceeecceeec-----------------------------------c----------cccccch----hhhccCC-Ccce
Confidence 77542210000 0 0000000 1111222 3466
Q ss_pred eccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC---cEEEEeCCCCC
Q 016769 175 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWDIRNPG 251 (383)
Q Consensus 175 ~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg---~i~~wdl~~~~ 251 (383)
+.|+.|+.+.|||++-... ..+... +. .+++...+ ..+. .+
T Consensus 161 ~tGgRDg~illWD~R~n~~-d~~e~~--------~~----------------------~~~~~~n~~ptpskp---~~-- 204 (720)
T KOG0321|consen 161 CTGGRDGEILLWDCRCNGV-DALEEF--------DN----------------------RIYGRHNTAPTPSKP---LK-- 204 (720)
T ss_pred eeccCCCcEEEEEEeccch-hhHHHH--------hh----------------------hhhccccCCCCCCch---hh--
Confidence 7888899999999865431 111100 00 00111110 0000 00
Q ss_pred Cceeeeeccc----cCeEEEEEeCCCCceEEEEc-CCcEEEEEccCCCCeeEEee----eeecC---CCCeEEEEECCCC
Q 016769 252 IPLTAMKVHL----EPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKK----EINLE---RPGISGTSIRPDS 319 (383)
Q Consensus 252 ~~~~~~~~h~----~~v~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~~~----~~~~~---~~~i~~~~~~p~~ 319 (383)
..+..-++|. ..|+.+.| .+...++++|. |+.|++|||........... ....+ ..++.++.+...|
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred ccccccccccCceeeeeEEEEE-eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 0011112222 23445555 23356788777 99999999986543322211 11111 3457788888888
Q ss_pred cEEEEEeCCCcEEEEEcCCC--ceEEEecccccceeEE--EEeCCCCEEEEEeCCCcEEEEeCCCCC
Q 016769 320 KIAATAGWDRRVRIYNYRKG--SALAILKYHHATCNAV--SFSSDCKLMASASEDSTVALWELYPPH 382 (383)
Q Consensus 320 ~~l~s~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~v--~~spd~~~las~s~d~~i~~w~~~~~~ 382 (383)
.++.+.+.|++|++||+.+- .+...+.++...-.-+ ..+||+.++++|+.|..+.+|.+.-|.
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 99988899999999999653 3344555555433222 468999999999999999999997654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-15 Score=122.88 Aligned_cols=283 Identities=19% Similarity=0.246 Sum_probs=171.7
Q ss_pred eeeeecCCceeeEEEeC-CCCeEEEecCC-------CeEEEeeCcccccc---------cccccccccceeeeeeecCCC
Q 016769 12 AVLRGHRASVTDVCFHQ-TKPILFAGTTG-------GELRIWDTVQHRTV---------SSSWVHSAAHGIVSVATGPSI 74 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~-~~~~L~sgs~D-------~~v~vW~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 74 (383)
.+|..|.+.|+.|+-+| +.+.|+|+-.| ....||.+++.... ..+.. .....+.++.+.|
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~P-- 133 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT-EAVGKINCVEWEP-- 133 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH-HHhCceeeEEEcC--
Confidence 46778899999999999 55677776554 24789997653322 12211 1223577899999
Q ss_pred CcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccc
Q 016769 75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKE 154 (383)
Q Consensus 75 ~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (383)
++.++++-. |+.|.+|+++++..+. .. +..+.... ...
T Consensus 134 ns~klasm~-dn~i~l~~l~ess~~v---ae-------------v~ss~s~e----~~~--------------------- 171 (370)
T KOG1007|consen 134 NSDKLASMD-DNNIVLWSLDESSKIV---AE-------------VLSSESAE----MRH--------------------- 171 (370)
T ss_pred CCCeeEEec-cCceEEEEcccCcchh---ee-------------eccccccc----ccc---------------------
Confidence 456777655 8999999998763110 00 00000000 000
Q ss_pred cCCccceecccC--CCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceE
Q 016769 155 SNRSFEIIDDVP--AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 232 (383)
Q Consensus 155 ~~~~~~~~~~~~--~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (383)
.......+ .++. .+++. .+++++.||+++..+...+... + +...--..|.|+. .-.
T Consensus 172 ----~ftsg~WspHHdgn-qv~tt--~d~tl~~~D~RT~~~~~sI~dA-H-----------gq~vrdlDfNpnk---q~~ 229 (370)
T KOG1007|consen 172 ----SFTSGAWSPHHDGN-QVATT--SDSTLQFWDLRTMKKNNSIEDA-H-----------GQRVRDLDFNPNK---QHI 229 (370)
T ss_pred ----eecccccCCCCccc-eEEEe--CCCcEEEEEccchhhhcchhhh-h-----------cceeeeccCCCCc---eEE
Confidence 00000111 2333 34443 3579999999998876555421 0 1111111233332 235
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCc-eEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
+++|+.||.|+|||.|+.+.|+..+..|...|.++.|.+..+. ++++|.|..+.+|-...-+....
T Consensus 230 lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~q------------- 296 (370)
T KOG1007|consen 230 LVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQ------------- 296 (370)
T ss_pred EEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccc-------------
Confidence 8899999999999999999999999999999999999887775 47899999999996543221111
Q ss_pred EEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeC
Q 016769 312 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWEL 378 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~ 378 (383)
+.|.-|..-.--.....+++ -+ ....+.++..|+..|.+++||.-.+ ++|+-|.||.+.|=++
T Consensus 297 -i~~~~dese~e~~dseer~k--pL-~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 297 -IEFEDDESESEDEDSEERVK--PL-QDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred -cccccccccCcchhhHHhcc--cc-cccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 11111100000000111122 11 1234567888999999999998777 7899999999988665
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-12 Score=121.98 Aligned_cols=292 Identities=26% Similarity=0.462 Sum_probs=189.4
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccc-cccccccccccceeeeeee-cCCCCcc-eeEecc-cCCeE
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVAT-GPSIGLN-KVISQG-RDGTV 88 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~-~l~s~~-~D~ti 88 (383)
.+.+|...|.++.|.+.+..++.++.|+.+.+|+..... ....+..... ..+..+.. .+ ++. .++..+ .|+++
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALSSP--DGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-CceeeEEEECC--CcceEEeccCCCCccE
Confidence 577999999999999999999999999999999987765 3333322111 12333333 33 233 455544 49999
Q ss_pred EEeecCC-CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 89 KCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 89 ~~Wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
++|++.. ... ...+..+.... . ...+.+
T Consensus 137 ~~~~~~~~~~~----~~~~~~~~~~v----------------------------------------------~-~~~~~~ 165 (466)
T COG2319 137 KLWDLSTPGKL----IRTLEGHSESV----------------------------------------------T-SLAFSP 165 (466)
T ss_pred EEEEecCCCeE----EEEEecCcccE----------------------------------------------E-EEEECC
Confidence 9999875 210 00000000000 0 011223
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
.+. +++..+..++.+++|++.....+..+..+ .....+. .+.+.. ...+++++.|+.|++||.
T Consensus 166 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~---~~~~~~---~~~~~~~~~d~~i~~wd~ 228 (466)
T COG2319 166 DGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGH----------TDPVSSL---AFSPDG---GLLIASGSSDGTIRLWDL 228 (466)
T ss_pred CCC-EEEecCCCCCceEEEEcCCCceEEeeccC----------CCceEEE---EEcCCc---ceEEEEecCCCcEEEEEC
Confidence 332 33333224889999999886655555421 1122222 233322 113444599999999998
Q ss_pred CCCCCcee-eeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEe
Q 016769 248 RNPGIPLT-AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 326 (383)
Q Consensus 248 ~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~ 326 (383)
.. ..... .+..|...+ ...|.+.+..+++++.|+.+++|++..... .... ...+...+.++.|+|++..+++++
T Consensus 229 ~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~--~~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 229 ST-GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRT--LSGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred CC-CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-EEEE--EecCCccEEEEEECCCCCEEEEee
Confidence 74 33344 567777765 337877777778899999999999975543 1111 134467899999999888888899
Q ss_pred CCCcEEEEEcCCCceEEEec--ccccceeEEEEeCCCCEEEEE-eCCCcEEEEeCCC
Q 016769 327 WDRRVRIYNYRKGSALAILK--YHHATCNAVSFSSDCKLMASA-SEDSTVALWELYP 380 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~spd~~~las~-s~d~~i~~w~~~~ 380 (383)
.|+.+++||........... .|...+..+.|.+++..++.+ ..|+.+.+|++..
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred CCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCC
Confidence 99999999998887776665 788889999994343555555 7889999999853
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=147.97 Aligned_cols=150 Identities=22% Similarity=0.321 Sum_probs=126.2
Q ss_pred eEEEEEe--CCCcEEEEeCCCC-----------CCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCC--C-
Q 016769 231 VNVLAGY--EDGSILVWDIRNP-----------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS--T- 294 (383)
Q Consensus 231 ~~~~sg~--~dg~i~~wdl~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~--~- 294 (383)
..+++|+ .|+.+++|+...- ...+..+..|...|.|+.|++++.++++|+.|+.|.+|..... +
T Consensus 26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~ 105 (942)
T KOG0973|consen 26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGT 105 (942)
T ss_pred eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcc
Confidence 3577888 8999999986321 1234556679999999999999999999999999999997720 0
Q ss_pred -----------CeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCE
Q 016769 295 -----------GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKL 363 (383)
Q Consensus 295 -----------~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~ 363 (383)
........+..|...|..++++|++.++|+++.|++|.|||..+.+.++++++|+..|..+.|-|-|++
T Consensus 106 ~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky 185 (942)
T KOG0973|consen 106 VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY 185 (942)
T ss_pred cccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCe
Confidence 001122345668889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCC
Q 016769 364 MASASEDSTVALWELYP 380 (383)
Q Consensus 364 las~s~d~~i~~w~~~~ 380 (383)
|||-+.|++|++|+..+
T Consensus 186 ~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 186 FASQSDDRTLKVWRTSD 202 (942)
T ss_pred eeeecCCceEEEEEccc
Confidence 99999999999999754
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-14 Score=133.88 Aligned_cols=145 Identities=15% Similarity=0.212 Sum_probs=102.3
Q ss_pred EEEEEeCCCcEEEE---eCCCCC----CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee
Q 016769 232 NVLAGYEDGSILVW---DIRNPG----IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN 304 (383)
Q Consensus 232 ~~~sg~~dg~i~~w---dl~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~ 304 (383)
+++.|+++|.|.-= +.+... .++.....|.++|.++.+.|-+.-++..+.|-+++||.-...+.... ...
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~---~~~ 438 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL---SLD 438 (555)
T ss_pred eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch---hhh
Confidence 46778888877652 222211 12334556889999999988877655544599999998653332211 112
Q ss_pred cCCCCeEEEEECCCCc-EEEEEeCCCcEEEEEcCC--CceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 305 LERPGISGTSIRPDSK-IAATAGWDRRVRIYNYRK--GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 305 ~~~~~i~~~~~~p~~~-~l~s~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.....+.++++||... .|+++..||+|.+||+.. ..+.....-+......+.|+++|+.|+.|...|.+++|++.
T Consensus 439 ~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 439 SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 2334589999999864 688888899999999954 34454554455566778889999999999999999999995
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-13 Score=123.36 Aligned_cols=199 Identities=8% Similarity=0.129 Sum_probs=117.2
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCee-eEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEE
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~w 245 (383)
+++ +++.++...++.+.+||+++...+ ..... .. .. . ....+ .+.|+ +...+++...++.|.+|
T Consensus 89 ~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-~~----~~-~--~~~~~---~~~p~---g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 89 HQG-RFLFSASYNANCVSVSPLDKDGIPVAPIQI-IE----GL-E--GCHSA---NIDPD---NRTLWVPCLKEDRIRLF 153 (330)
T ss_pred CCC-CEEEEEEcCCCeEEEEEECCCCCCCCceee-cc----CC-C--cccEe---EeCCC---CCEEEEeeCCCCEEEEE
Confidence 444 355566556789999999643211 11110 00 00 0 00111 13332 22334667788999999
Q ss_pred eCCCCCCcee----eeec-cccCeEEEEEeCCCCceEEEEc-CCcEEEEEccCCCCeeEEeeeeecC------CCCeEEE
Q 016769 246 DIRNPGIPLT----AMKV-HLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLE------RPGISGT 313 (383)
Q Consensus 246 dl~~~~~~~~----~~~~-h~~~v~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~~~~~~~~------~~~i~~~ 313 (383)
|+++.+.... .... .......+.|++++..+++.+. ++.|.+|+++..++........... ......+
T Consensus 154 d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i 233 (330)
T PRK11028 154 TLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI 233 (330)
T ss_pred EECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE
Confidence 9976332110 0111 1223467899999998877665 8999999998543322221111110 1123358
Q ss_pred EECCCCcEEEEEe-CCCcEEEEEcCCCceEEEecccc---cceeEEEEeCCCCEEEEEeC-CCcEEEEeCCC
Q 016769 314 SIRPDSKIAATAG-WDRRVRIYNYRKGSALAILKYHH---ATCNAVSFSSDCKLMASASE-DSTVALWELYP 380 (383)
Q Consensus 314 ~~~p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~h~---~~v~~v~~spd~~~las~s~-d~~i~~w~~~~ 380 (383)
.|+|++++++++. .++.|.+|+++.......+.+|. .....++|+|||++|+++.. +++|.+|++.+
T Consensus 234 ~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 234 HITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 8999999988875 47899999996543211222221 24567899999998887765 89999998854
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-14 Score=123.01 Aligned_cols=279 Identities=18% Similarity=0.254 Sum_probs=163.2
Q ss_pred CeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCc
Q 016769 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (383)
Q Consensus 31 ~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~ 110 (383)
..+|++-..|.|+++|..+++.+.....+......+. |........+.+++.||+||+||+........ +
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vr--f~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~----~---- 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVR--FISCDSPHGVISCSSDGTVRLWDIRSQAESAR----I---- 110 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceE--EecCCCCCeeEEeccCCeEEEEEeecchhhhh----e----
Confidence 5689999999999999998887777666544322222 22211246789999999999999975431110 0
Q ss_pred eeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC-CCceeeecc---CCcceEEEE
Q 016769 111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE-GPKYMAVAG---EQLSEVEIW 186 (383)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g---~~~~~i~~W 186 (383)
...+.+. .+ +..+... ..+++++.. ..+..+.+|
T Consensus 111 ------~~~~~~~-------~~-----------------------------f~~ld~nck~~ii~~GtE~~~s~A~v~lw 148 (376)
T KOG1188|consen 111 ------SWTQQSG-------TP-----------------------------FICLDLNCKKNIIACGTELTRSDASVVLW 148 (376)
T ss_pred ------eccCCCC-------Cc-----------------------------ceEeeccCcCCeEEeccccccCceEEEEE
Confidence 0000000 00 0000000 001122111 234579999
Q ss_pred ecCCCCe-eeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC--ceeeeeccccC
Q 016769 187 DLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEP 263 (383)
Q Consensus 187 dl~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~--~~~~~~~h~~~ 263 (383)
|.+..++ +..+.. .+..+ + ....|.|.+.+ .|++|+.||.|.|||++.+.. .+...-.|...
T Consensus 149 DvR~~qq~l~~~~e-------SH~DD--V---T~lrFHP~~pn---lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS 213 (376)
T KOG1188|consen 149 DVRSEQQLLRQLNE-------SHNDD--V---TQLRFHPSDPN---LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS 213 (376)
T ss_pred Eeccccchhhhhhh-------hccCc--c---eeEEecCCCCC---eEEeecccceEEeeecCCCcchhhHHHhhcccce
Confidence 9998776 333321 12111 1 11237776543 589999999999999986532 12222245667
Q ss_pred eEEEEEeC-CCCceEEEEcCCcEEEEEccCCCCeeEEeee-eec--------CCCCeEEEEECC-CCcEEEEEeC-CCcE
Q 016769 264 VLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKE-INL--------ERPGISGTSIRP-DSKIAATAGW-DRRV 331 (383)
Q Consensus 264 v~~~~~~~-~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~-~~~--------~~~~i~~~~~~p-~~~~l~s~~~-dg~i 331 (383)
|.++.|.. .++.++.-+...+..+|+++.......+... ... ...-|.+ .+| +..+++.++. -++.
T Consensus 214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~--~~~~~~~~~~l~g~~~n~~ 291 (376)
T KOG1188|consen 214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE--HSPGDKDTCALAGTDSNKG 291 (376)
T ss_pred eeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec--ccCCCcceEEEeccccCce
Confidence 88999954 4456778889999999999876532222111 000 0000111 223 3345555554 6667
Q ss_pred EEEEcCC------CceEEEecc-cccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 332 RIYNYRK------GSALAILKY-HHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 332 ~iwd~~~------~~~~~~~~~-h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
.++-+.. .+.+..+++ |..-|.++.|...+.++.||++||.+.+|..
T Consensus 292 ~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 292 TIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 7765532 334455666 6666778888777789999999999999986
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-15 Score=135.08 Aligned_cols=134 Identities=18% Similarity=0.282 Sum_probs=106.0
Q ss_pred eCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEEC
Q 016769 237 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 316 (383)
Q Consensus 237 ~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (383)
+....|.|.++.... .+..+..-.+-|.++.|+|...+++.+ ....|++|||..+ .+.+.+......|..++++
T Consensus 543 ~~~~~VliHQLSK~~-sQ~PF~kskG~vq~v~FHPs~p~lfVa-Tq~~vRiYdL~kq----elvKkL~tg~kwiS~msih 616 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRK-SQSPFRKSKGLVQRVKFHPSKPYLFVA-TQRSVRIYDLSKQ----ELVKKLLTGSKWISSMSIH 616 (733)
T ss_pred CCcceEEEEeccccc-ccCchhhcCCceeEEEecCCCceEEEE-eccceEEEehhHH----HHHHHHhcCCeeeeeeeec
Confidence 456789999997632 233343344578899999998877665 4667999998642 2233333444568999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCC-ceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 016769 317 PDSKIAATAGWDRRVRIYNYRKG-SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376 (383)
Q Consensus 317 p~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w 376 (383)
|.|.-|+.|+.|+++.+||++-+ +++++++.|.+.+.+|+||+.=.++|+|+.||++.||
T Consensus 617 p~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 99999999999999999999754 6788999999999999999988899999999999998
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-15 Score=141.63 Aligned_cols=282 Identities=17% Similarity=0.259 Sum_probs=176.1
Q ss_pred eeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEe
Q 016769 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~W 91 (383)
..|.||...|+|+.|...|.+++||+.|..|+||...+++|+..+.+|.. .+.-++.+- +...++++|.|..||+|
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~--~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSS--NNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccch--hhhhhhhcccCceEEEE
Confidence 35789999999999999999999999999999999999999998877753 344444332 23456789999999999
Q ss_pred ecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCc
Q 016769 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPK 171 (383)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (383)
.+.++.... .++.+. |.. . ..++++.
T Consensus 260 rl~~~~pvs----vLrght------------------------------gav----------------t-aiafsP~--- 285 (1113)
T KOG0644|consen 260 RLPDGAPVS----VLRGHT------------------------------GAV----------------T-AIAFSPR--- 285 (1113)
T ss_pred ecCCCchHH----HHhccc------------------------------cce----------------e-eeccCcc---
Confidence 998774211 111000 000 0 0111111
Q ss_pred eeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC
Q 016769 172 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~ 251 (383)
. +.+.|+++++||-+- ..+.. .+..+.+..+ ...+.. .| .+ + .....+++.|+.-..|.+...
T Consensus 286 --~-sss~dgt~~~wd~r~-~~~~y-----~prp~~~~~~-~~~~s~--~~--~~-~-~~~f~Tgs~d~ea~n~e~~~l- 348 (1113)
T KOG0644|consen 286 --A-SSSDDGTCRIWDARL-EPRIY-----VPRPLKFTEK-DLVDSI--LF--EN-N-GDRFLTGSRDGEARNHEFEQL- 348 (1113)
T ss_pred --c-cCCCCCceEeccccc-ccccc-----CCCCCCcccc-cceeee--ec--cc-c-ccccccccCCcccccchhhHh-
Confidence 1 446689999999871 11111 1111222222 112211 11 11 1 124678999998888875431
Q ss_pred CceeeeeccccCeEEEEEeCCC-CceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC-cEEEEEeCCC
Q 016769 252 IPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KIAATAGWDR 329 (383)
Q Consensus 252 ~~~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~l~s~~~dg 329 (383)
..+...+..+....+. ...+++-.+..+++|++-..... .....+...+..+.++|-+ +...+++.||
T Consensus 349 ------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~----H~l~ghsd~~yvLd~Hpfn~ri~msag~dg 418 (1113)
T KOG0644|consen 349 ------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL----HNLMGHSDEVYVLDVHPFNPRIAMSAGYDG 418 (1113)
T ss_pred ------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhh----hhhcccccceeeeeecCCCcHhhhhccCCC
Confidence 1111111122222111 12355566777889987644311 1233455678889999854 5677899999
Q ss_pred cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 330 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 330 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
+..|||+..|.+++.+.--...+..-+||+||..++..-.-|.+.|...
T Consensus 419 st~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 419 STIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred ceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence 9999999988877655432445666799999999888888888887754
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-15 Score=135.97 Aligned_cols=220 Identities=20% Similarity=0.276 Sum_probs=131.0
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccc------cccc----ccccccccceeeeeeecCCCCcc
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH------RTVS----SSWVHSAAHGIVSVATGPSIGLN 77 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~------~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 77 (383)
-+|+.+|++|.++|.|+++.+++..++|||-||+|+.|++... .... .+.+|. ..+..++++.. ..
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ght--davw~l~~s~~--~~ 409 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHT--DAVWLLALSST--KD 409 (577)
T ss_pred eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccc--cceeeeeeccc--cc
Confidence 4588999999999999999999999999999999999976422 1111 222333 23556666653 35
Q ss_pred eeEecccCCeEEEeecCCCCCCCCCeeeeecC-ceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccC
Q 016769 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESN 156 (383)
Q Consensus 78 ~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (383)
+|++++.|||+|.|+...... .++..... .++. .+......
T Consensus 410 ~Llscs~DgTvr~w~~~~~~~---~~f~~~~e~g~Pl-svd~~ss~---------------------------------- 451 (577)
T KOG0642|consen 410 RLLSCSSDGTVRLWEPTEESP---CTFGEPKEHGYPL-SVDRTSSR---------------------------------- 451 (577)
T ss_pred ceeeecCCceEEeeccCCcCc---cccCCccccCCcc-eEeeccch----------------------------------
Confidence 799999999999999854321 00110000 0000 00000000
Q ss_pred CccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEE
Q 016769 157 RSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 236 (383)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 236 (383)
..+.++....+..-+.+++..+....+....... ....+....+ ...| +...++++
T Consensus 452 --------------~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~--~~~~~~in~v----Vs~~----~~~~~~~~ 507 (577)
T KOG0642|consen 452 --------------PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG--PRRYPQINKV----VSHP----TADITFTA 507 (577)
T ss_pred --------------hHhhhhhcccccccchhhhhhhheeeccccCCCc--ccccCccceE----EecC----CCCeeEec
Confidence 0011111111122222233322222222111000 0000001111 1111 12357889
Q ss_pred eCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCC
Q 016769 237 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 294 (383)
Q Consensus 237 ~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~ 294 (383)
.+|+.|+++|-.+ +.++..+..|...+.++++++.+.++++++.|+++++|.++..+
T Consensus 508 hed~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 508 HEDRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ccCCceecccccc-cccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 9999999999877 45677788899999999999999999999999999999987654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-14 Score=124.93 Aligned_cols=72 Identities=28% Similarity=0.367 Sum_probs=65.0
Q ss_pred CCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEe-cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 308 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 308 ~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
..|+++++++||+++|.|+.||.|.|++..+.+.+... +.|...|..+.|+||.+++++.|.|..+.+..+.
T Consensus 282 ~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 46999999999999999999999999999988877644 5799999999999999999999999999888764
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=117.56 Aligned_cols=298 Identities=17% Similarity=0.256 Sum_probs=179.6
Q ss_pred eeeecCCceeeEEEeC----CCCeEEEecCCCeEEEeeCcccc--c-ccccccccccceee--eeeecCCCCcceeEecc
Q 016769 13 VLRGHRASVTDVCFHQ----TKPILFAGTTGGELRIWDTVQHR--T-VSSSWVHSAAHGIV--SVATGPSIGLNKVISQG 83 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~----~~~~L~sgs~D~~v~vW~~~~~~--~-~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~ 83 (383)
..++|+.+|..++|++ +...+++.....++.+++..... + ++........+... +++..-..+.-.++.+|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 4679999999999984 33344444555578888875543 2 22221111112222 23332211234577888
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
.-|.||+.|+.++++... +.. |+. . ..+ .
T Consensus 113 ~~GvIrVid~~~~~~~~~----~~g---hG~-----------------s-------INe--------------------i 141 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKN----YRG---HGG-----------------S-------INE--------------------I 141 (385)
T ss_pred ceeEEEEEecchhhhccc----eec---cCc-----------------c-------chh--------------------h
Confidence 999999999987653210 000 000 0 000 0
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
...+..++ ++++++.|.+||+|+++++.++..+..-. .+.+.+ +++ .|.++. .++++|+-|.+|+
T Consensus 142 k~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG~e-------gHrdeV--LSv-D~~~~g----d~i~ScGmDhslk 206 (385)
T KOG1034|consen 142 KFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGGVE-------GHRDEV--LSV-DFSLDG----DRIASCGMDHSLK 206 (385)
T ss_pred hcCCCCCc-EEEEecCCceEEEEeccCCeEEEEecccc-------cccCcE--EEE-EEcCCC----CeeeccCCcceEE
Confidence 11233333 45567778999999999999988776411 112222 222 244332 2689999999999
Q ss_pred EEeCCCCC-------------------Cc--------eeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCC---
Q 016769 244 VWDIRNPG-------------------IP--------LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS--- 293 (383)
Q Consensus 244 ~wdl~~~~-------------------~~--------~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~--- 293 (383)
+|+|..+. .| ..+-..|..+|-|+.|-. +.+++-+.++.|..|--...
T Consensus 207 ~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSkscenaI~~w~pgkl~e~ 284 (385)
T KOG1034|consen 207 LWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKSCENAIVCWKPGKLEES 284 (385)
T ss_pred EEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecccCceEEEEecchhhhh
Confidence 99996321 00 012234666777776643 45688888999999975211
Q ss_pred -------CCeeEEeeeeecCCCCeEE--EEECCCCcEEEEEeCCCcEEEEEcCCCceE--EEecc--cccceeEEEEeCC
Q 016769 294 -------TGSCVIKKEINLERPGISG--TSIRPDSKIAATAGWDRRVRIYNYRKGSAL--AILKY--HHATCNAVSFSSD 360 (383)
Q Consensus 294 -------~~~~~~~~~~~~~~~~i~~--~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~--h~~~v~~v~~spd 360 (383)
........+++...-.+.- ++|.|-.+.||.|...|+|++||++...+. .++.. -.+.|...+||-|
T Consensus 285 ~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d 364 (385)
T KOG1034|consen 285 IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD 364 (385)
T ss_pred hhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeeccc
Confidence 1111111223333333443 456677889999999999999999876553 23322 2346888899999
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 016769 361 CKLMASASEDSTVALWEL 378 (383)
Q Consensus 361 ~~~las~s~d~~i~~w~~ 378 (383)
|..|+...+|++|--||.
T Consensus 365 gs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 365 GSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CcEEEEEeCCCcEEEEEe
Confidence 999999999999988875
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-14 Score=122.45 Aligned_cols=214 Identities=17% Similarity=0.286 Sum_probs=129.6
Q ss_pred CCCCeeeeeecCCceeeEEEeCC-CCeEEEecCCCeEEEeeCccccccc-------ccccccccceeeeeeecCCCCcce
Q 016769 7 PPDPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVS-------SSWVHSAAHGIVSVATGPSIGLNK 78 (383)
Q Consensus 7 ~~~~~~~l~gH~~~V~~v~f~~~-~~~L~sgs~D~~v~vW~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 78 (383)
.+.....+.||+++|..++|.|- ...|||||+|.+|.||+........ .+.+|. ..+-.+.+.|. ..+.
T Consensus 70 ~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~--rrVg~V~wHPt-A~NV 146 (472)
T KOG0303|consen 70 MDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ--RRVGLVQWHPT-APNV 146 (472)
T ss_pred cCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc--eeEEEEeeccc-chhh
Confidence 34445578999999999999994 4689999999999999987654332 233333 34555677775 3578
Q ss_pred eEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCc
Q 016769 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRS 158 (383)
Q Consensus 79 l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (383)
|+|+|.|++|.+||+++|+.. .++. .+..++
T Consensus 147 Llsag~Dn~v~iWnv~tgeal----i~l~-----------------------hpd~i~---------------------- 177 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGEAL----ITLD-----------------------HPDMVY---------------------- 177 (472)
T ss_pred HhhccCCceEEEEeccCCcee----eecC-----------------------CCCeEE----------------------
Confidence 999999999999999998631 1110 011111
Q ss_pred cceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEE---E
Q 016769 159 FEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL---A 235 (383)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s 235 (383)
..++..+|. ++++...|.+||+||.++++.+..-..+. ++ +-.... |..+ +. .+. +
T Consensus 178 ---S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~he-----G~----k~~Rai---fl~~---g~-i~tTGfs 236 (472)
T KOG0303|consen 178 ---SMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHE-----GA----KPARAI---FLAS---GK-IFTTGFS 236 (472)
T ss_pred ---EEEeccCCc--eeeeecccceeEEEcCCCCcEeeeccccc-----CC----CcceeE---Eecc---Cc-eeeeccc
Confidence 112233443 34556778999999999998765442110 00 011111 1111 10 122 2
Q ss_pred EeCCCcEEEEeCCCCCCceeeeeccccCeEEEEE-eCCCCceEEEE-cCCcEEEEEccCC
Q 016769 236 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESCNGGISGG-ADQKIVLYNLDHS 293 (383)
Q Consensus 236 g~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~s~~-~d~~i~~wdl~~~ 293 (383)
...+.++-+||-.+-..++..-..-+..-.-+.| |++...++.+| .|+.|+.|.+...
T Consensus 237 r~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 237 RMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred cccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 3457889999976544443322222222223333 77766665555 5899999988654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.1e-12 Score=108.59 Aligned_cols=182 Identities=19% Similarity=0.291 Sum_probs=123.5
Q ss_pred eEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEE--EEeCCCcEEEEeCCCCCCceeeeec
Q 016769 182 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL--AGYEDGSILVWDIRNPGIPLTAMKV 259 (383)
Q Consensus 182 ~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--sg~~dg~i~~wdl~~~~~~~~~~~~ 259 (383)
.|.|+|+++.+.+.++..- .++..++| ++.++..+. .++ .....|.|.+||..+ -.+...+..
T Consensus 107 ~IyIydI~~MklLhTI~t~--------~~n~~gl~----AlS~n~~n~--ylAyp~s~t~GdV~l~d~~n-l~~v~~I~a 171 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETT--------PPNPKGLC----ALSPNNANC--YLAYPGSTTSGDVVLFDTIN-LQPVNTINA 171 (391)
T ss_pred cEEEEecccceeehhhhcc--------CCCccceE----eeccCCCCc--eEEecCCCCCceEEEEEccc-ceeeeEEEe
Confidence 4999999999988776521 12334444 344443322 122 234578999999876 456778889
Q ss_pred cccCeEEEEEeCCCCceEEEEcCCc-EEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCC
Q 016769 260 HLEPVLCLSIDESCNGGISGGADQK-IVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 338 (383)
Q Consensus 260 h~~~v~~~~~~~~~~~~~s~~~d~~-i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~ 338 (383)
|..++.+++|+++|..+++++..|+ ||++.+...+....++.-.. .-.|.+++|+|++++|++.|..++|++|.+++
T Consensus 172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 9999999999999999999999998 58998865543222221111 23588999999999999999999999998854
Q ss_pred Cc---------------------------eE----------EEecccccc-eeEEEEe--CCCCEEEEEeCCCcEEEEeC
Q 016769 339 GS---------------------------AL----------AILKYHHAT-CNAVSFS--SDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 339 ~~---------------------------~~----------~~~~~h~~~-v~~v~~s--pd~~~las~s~d~~i~~w~~ 378 (383)
-. ++ .+.+.-... -...++. +..+.+-.++.||....|.+
T Consensus 250 ~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l 329 (391)
T KOG2110|consen 250 VSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL 329 (391)
T ss_pred cccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence 10 00 000000001 0223454 35678888999999999999
Q ss_pred CC
Q 016769 379 YP 380 (383)
Q Consensus 379 ~~ 380 (383)
.+
T Consensus 330 ~~ 331 (391)
T KOG2110|consen 330 PP 331 (391)
T ss_pred CC
Confidence 54
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=122.70 Aligned_cols=245 Identities=18% Similarity=0.236 Sum_probs=158.1
Q ss_pred ccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceecc
Q 016769 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV 140 (383)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (383)
...++.++.|.|. -..|+++|.|++++++.+.... ++.+ .+. .+.+.|..
T Consensus 212 s~~~I~sv~FHp~--~plllvaG~d~~lrifqvDGk~---N~~l----qS~-----~l~~fPi~---------------- 261 (514)
T KOG2055|consen 212 SHGGITSVQFHPT--APLLLVAGLDGTLRIFQVDGKV---NPKL----QSI-----HLEKFPIQ---------------- 261 (514)
T ss_pred CcCCceEEEecCC--CceEEEecCCCcEEEEEecCcc---Chhh----eee-----eeccCccc----------------
Confidence 3457899999995 4678899999999999996432 1110 011 11111100
Q ss_pred CcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEE
Q 016769 141 GETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ 220 (383)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 220 (383)
-..+.+.|...++++ +.......|||++.+. .++.... ....+.+.
T Consensus 262 ---------------------~a~f~p~G~~~i~~s-~rrky~ysyDle~ak~-~k~~~~~-------g~e~~~~e---- 307 (514)
T KOG2055|consen 262 ---------------------KAEFAPNGHSVIFTS-GRRKYLYSYDLETAKV-TKLKPPY-------GVEEKSME---- 307 (514)
T ss_pred ---------------------eeeecCCCceEEEec-ccceEEEEeecccccc-ccccCCC-------Ccccchhh----
Confidence 011234454445554 4457899999988773 2232211 00111111
Q ss_pred eecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEe
Q 016769 221 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK 300 (383)
Q Consensus 221 ~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~ 300 (383)
-|-.+ .....++..+..|.|.+--..+ ...+..++. .+.|..+.|+.++..+++++.+|.|.+||++...+...+.
T Consensus 308 ~FeVS--hd~~fia~~G~~G~I~lLhakT-~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~ 383 (514)
T KOG2055|consen 308 RFEVS--HDSNFIAIAGNNGHIHLLHAKT-KELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV 383 (514)
T ss_pred eeEec--CCCCeEEEcccCceEEeehhhh-hhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe
Confidence 11111 1112577788899999988765 344555553 4578889999888889999999999999998664333222
Q ss_pred eeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCC------CceEEEecccccceeEEEEeCCCCEEEEEeC--CCc
Q 016769 301 KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK------GSALAILKYHHATCNAVSFSSDCKLMASASE--DST 372 (383)
Q Consensus 301 ~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~v~~spd~~~las~s~--d~~ 372 (383)
- -..-.-++++.++++.|||+|+..|-|.|||..+ +++++++..-.-.|.+++|+||.++||-+|. ...
T Consensus 384 D---~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna 460 (514)
T KOG2055|consen 384 D---DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA 460 (514)
T ss_pred e---cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc
Confidence 1 1111235677889999999999999999999754 5777788777889999999999999887765 344
Q ss_pred EEEE
Q 016769 373 VALW 376 (383)
Q Consensus 373 i~~w 376 (383)
+|+-
T Consensus 461 lrLV 464 (514)
T KOG2055|consen 461 LRLV 464 (514)
T ss_pred eEEE
Confidence 5543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=127.12 Aligned_cols=245 Identities=14% Similarity=0.205 Sum_probs=156.3
Q ss_pred CCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCC
Q 016769 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (383)
Q Consensus 7 ~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (383)
.-....+|+||++.|+||+|+.||+.+|||++|..|.+|+..-...+. ..|. ..+.++.|.|- ...|+|++. .
T Consensus 42 dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--YSH~--D~IQCMsFNP~--~h~LasCsL-s 114 (1081)
T KOG1538|consen 42 DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--YSHN--DAIQCMSFNPI--THQLASCSL-S 114 (1081)
T ss_pred CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--eccC--CeeeEeecCch--HHHhhhcch-h
Confidence 334667899999999999999999999999999999999965332221 1233 45788888884 356777764 2
Q ss_pred eEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 87 ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
-+-+|..+...... ... +
T Consensus 115 dFglWS~~qK~V~K---------------------~ks-------------------------------------s---- 132 (1081)
T KOG1538|consen 115 DFGLWSPEQKSVSK---------------------HKS-------------------------------------S---- 132 (1081)
T ss_pred hccccChhhhhHHh---------------------hhh-------------------------------------h----
Confidence 35667643221000 000 0
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
.+....+..+|| ..++.|..||+|.+-+
T Consensus 133 ---~R~~~CsWtnDG-------------------------------------------------qylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 133 ---SRIICCSWTNDG-------------------------------------------------QYLALGMFNGTISIRN 160 (1081)
T ss_pred ---eeEEEeeecCCC-------------------------------------------------cEEEEeccCceEEeec
Confidence 000111111111 1244455566666554
Q ss_pred CCC-CCCceeeeeccccCeEEEEEeCCCC-----ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCc
Q 016769 247 IRN-PGIPLTAMKVHLEPVLCLSIDESCN-----GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK 320 (383)
Q Consensus 247 l~~-~~~~~~~~~~h~~~v~~~~~~~~~~-----~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 320 (383)
-.. +...+..--+.++||.++.++|... .++.....+++.++.++. ...- +. +.-.....++.+-|+|.
T Consensus 161 k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG---~~Ig-k~-r~L~FdP~CisYf~NGE 235 (1081)
T KOG1538|consen 161 KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG---KQIG-KD-RALNFDPCCISYFTNGE 235 (1081)
T ss_pred CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc---eeec-cc-ccCCCCchhheeccCCc
Confidence 211 1111122223567888888866432 234555566666666542 1111 01 11123467888999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 321 IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 321 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
|+..|+.|+-+++|-. .|-.+.++.....+|++|+..|++++++.|..||+|-.||+
T Consensus 236 y~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 9999999999998865 57778888777889999999999999999999999999987
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.6e-14 Score=118.23 Aligned_cols=83 Identities=19% Similarity=0.382 Sum_probs=69.4
Q ss_pred eeeeecCCceeeEEEeCCC-CeEEEecCCCeEEEeeCcccccccccccc-cccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 12 AVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVH-SAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~~-~~L~sgs~D~~v~vW~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
..++||-.+|+.|.|+|+. ++|+|+|.|..||+|+..+..|+..+.+- .+..-+.++.++. ++.+++|+|.|.+++
T Consensus 129 ~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk 206 (385)
T KOG1034|consen 129 KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLK 206 (385)
T ss_pred cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC--CCCeeeccCCcceEE
Confidence 4578999999999999986 58999999999999999999888765432 2223578888887 467999999999999
Q ss_pred EeecCCC
Q 016769 90 CWDIENG 96 (383)
Q Consensus 90 ~Wd~~~~ 96 (383)
+|++...
T Consensus 207 ~W~l~~~ 213 (385)
T KOG1034|consen 207 LWRLNVK 213 (385)
T ss_pred EEecChh
Confidence 9999754
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-13 Score=113.60 Aligned_cols=192 Identities=16% Similarity=0.240 Sum_probs=132.4
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
+.++.+.+.-|++||..+++..+.... +++....+......|.|+.. -+.++...+|++||+.-+++
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~--------ydh~de~taAhsL~Fs~DGe-----qlfaGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRA--------YDHQDEYTAAHSLQFSPDGE-----QLFAGYKRCIRVFDTSRPGR 191 (406)
T ss_pred eeeeccccCceeeeeccccccccchhh--------hhhHHhhhhheeEEecCCCC-----eEeecccceEEEeeccCCCC
Confidence 344567788999999999986555432 12222233333345766543 34566788999999944443
Q ss_pred cee---ee-e---ccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEE
Q 016769 253 PLT---AM-K---VHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 324 (383)
Q Consensus 253 ~~~---~~-~---~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s 324 (383)
... ++ + +-..-+.+++|+|... .++.++..+++-||.-+.+. .++ .+..+.++|+.+.|.++|+.|.+
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~--pl~--llggh~gGvThL~~~edGn~lfs 267 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR--PLQ--LLGGHGGGVTHLQWCEDGNKLFS 267 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC--cee--eecccCCCeeeEEeccCcCeecc
Confidence 211 11 1 1134578889988765 57888999999888655432 222 23467789999999999999988
Q ss_pred EeC-CCcEEEEEcCC-CceEEEeccccc-ceeEEEE--eCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 325 AGW-DRRVRIYNYRK-GSALAILKYHHA-TCNAVSF--SSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 325 ~~~-dg~i~iwd~~~-~~~~~~~~~h~~-~v~~v~~--spd~~~las~s~d~~i~~w~~~~~ 381 (383)
|.. |-+|-.||++. ..++..+..|.. .-..|-| -|++++||+|+.||.|++||+-++
T Consensus 268 GaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred cccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence 874 78999999975 455667777776 3334444 689999999999999999999653
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-11 Score=116.03 Aligned_cols=289 Identities=27% Similarity=0.479 Sum_probs=188.9
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecC-CCeEEEeeCcccccccccccccccceeeeeeecCCCCcc-eeEecccCC
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDG 86 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~-D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~D~ 86 (383)
.....+.+|...|++++|+|++..+++++. |+.+++|+....+.+..+..|. ..+.++.+.+. +. .+++++.|+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~--~~~~~~~~~~d~ 221 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT--DPVSSLAFSPD--GGLLIASGSSDG 221 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCC--CceEEEEEcCC--cceEEEEecCCC
Confidence 455678999999999999999999999986 9999999998755555443333 35677777763 34 455669999
Q ss_pred eEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 87 ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
++++||...+..... . ...... .. +..+.
T Consensus 222 ~i~~wd~~~~~~~~~------~----------~~~~~~----------------------------------~~-~~~~~ 250 (466)
T COG2319 222 TIRLWDLSTGKLLRS------T----------LSGHSD----------------------------------SV-VSSFS 250 (466)
T ss_pred cEEEEECCCCcEEee------e----------cCCCCc----------------------------------ce-eEeEC
Confidence 999998764321000 0 000000 00 00122
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCe-eeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEE
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~w 245 (383)
+.+ .+++ +++.++.+++||+..... +..+.. +.....+. .+.|. . ..+++++.|+.+++|
T Consensus 251 ~~~-~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~---~~~~~---~-~~~~~~~~d~~~~~~ 311 (466)
T COG2319 251 PDG-SLLA-SGSSDGTIRLWDLRSSSSLLRTLSG----------HSSSVLSV---AFSPD---G-KLLASGSSDGTVRLW 311 (466)
T ss_pred CCC-CEEE-EecCCCcEEEeeecCCCcEEEEEec----------CCccEEEE---EECCC---C-CEEEEeeCCCcEEEE
Confidence 333 2333 567789999999987664 333311 11122222 34441 1 245568888999999
Q ss_pred eCCCCCCceeee--eccccCeEEEEEeCCC-CceEEE-EcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcE
Q 016769 246 DIRNPGIPLTAM--KVHLEPVLCLSIDESC-NGGISG-GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 321 (383)
Q Consensus 246 dl~~~~~~~~~~--~~h~~~v~~~~~~~~~-~~~~s~-~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 321 (383)
|++.... .... ..|...+..+.+ ... ..+..+ ..|+.+.+|++.... .. ...... ..+..+.+.+ ...
T Consensus 312 ~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~--~~--~~~~~~-~~~~~~~~~~-~~~ 383 (466)
T COG2319 312 DLETGKL-LSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK--PL--KTLEGH-SNVLSVSFSP-DGR 383 (466)
T ss_pred EcCCCce-EEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc--ee--EEecCC-ceEEEEEECC-CCC
Confidence 9876543 2233 367667888888 432 344444 578889999987554 11 111111 1277888888 544
Q ss_pred EEE-EeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 322 AAT-AGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 322 l~s-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+.. +..++.+.+|+............+...+....+++++..+++++.++.+++|+..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred EEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 444 6899999999999888776665443778889999999999999999999999874
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.8e-13 Score=114.89 Aligned_cols=281 Identities=15% Similarity=0.208 Sum_probs=176.3
Q ss_pred cCCceeeEEEeCCCC--eEEEecCCCeEEEeeCccccccccc----ccccccceeeeeeecCCCCcceeEecccCCeEEE
Q 016769 17 HRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSS----WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (383)
Q Consensus 17 H~~~V~~v~f~~~~~--~L~sgs~D~~v~vW~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~ 90 (383)
-...|.+++|.-+++ .|...+.|..+......+..+...+ ..+.....+..+... +..|++|-.+|.+++
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~----dg~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA----DGTLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc----CCEEEEEecCCcEEE
Confidence 346777888876654 5666667878877776655544443 122222334444332 367899999999999
Q ss_pred eecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCC
Q 016769 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGP 170 (383)
Q Consensus 91 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (383)
|..+.+..-..+...+..+ .. ...+.. .++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-----------~g------------------------------------~~~~r~--~~~~ 160 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-----------PG------------------------------------LYDVRQ--TDTD 160 (412)
T ss_pred EeccCCccccccceeeecC-----------Cc------------------------------------eeeecc--CCCC
Confidence 9988653211111111000 00 000001 1122
Q ss_pred ceeeeccCCc--ceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 171 KYMAVAGEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 171 ~~~~~~g~~~--~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
+++++.|+-. +.+++||+++.+++.+.... ....+..- -.+.-+.+ .|.+... ...+++++.-+.+++||.+
T Consensus 161 p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv-pnD~L~Lr--VPvW~tdi-~Fl~g~~--~~~fat~T~~hqvR~YDt~ 234 (412)
T KOG3881|consen 161 PYIVATGGKENINELKIWDLEQSKQIWSAKNV-PNDRLGLR--VPVWITDI-RFLEGSP--NYKFATITRYHQVRLYDTR 234 (412)
T ss_pred CceEecCchhcccceeeeecccceeeeeccCC-CCccccce--eeeeeccc-eecCCCC--CceEEEEecceeEEEecCc
Confidence 3455656555 78999999998776654421 11111100 00111111 1433211 2357889999999999999
Q ss_pred CCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC
Q 016769 249 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 328 (383)
Q Consensus 249 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d 328 (383)
...+|+..+..-..++.++...++++.+++|..-+.+..+|++.. . +.....+...++++++..+|.++++|++|-|
T Consensus 235 ~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~--k-l~g~~~kg~tGsirsih~hp~~~~las~GLD 311 (412)
T KOG3881|consen 235 HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG--K-LLGCGLKGITGSIRSIHCHPTHPVLASCGLD 311 (412)
T ss_pred ccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc--e-eeccccCCccCCcceEEEcCCCceEEeeccc
Confidence 888899888888889999999999999999999999999998743 1 1112234456789999999999999999999
Q ss_pred CcEEEEEcCCCceEEEecccccceeEEEEeCC
Q 016769 329 RRVRIYNYRKGSALAILKYHHATCNAVSFSSD 360 (383)
Q Consensus 329 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd 360 (383)
+.+||+|+.+.+.+... +-...+++|-+.++
T Consensus 312 RyvRIhD~ktrkll~kv-YvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 312 RYVRIHDIKTRKLLHKV-YVKSRLTFILLRDD 342 (412)
T ss_pred eeEEEeecccchhhhhh-hhhccccEEEecCC
Confidence 99999999986655322 22334566666554
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-14 Score=125.02 Aligned_cols=307 Identities=19% Similarity=0.231 Sum_probs=187.5
Q ss_pred eeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEe
Q 016769 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~W 91 (383)
..|.+|.+-|+.|.|+..|..|+|||.|..|.+||...++....... ++...+....|-|..+...+++++.||.+|+=
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc-ccccchhhhhccCCCCCcCceeccccCceeee
Confidence 46889999999999999999999999999999999987665443221 12223444456666566889999999999987
Q ss_pred ecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCc
Q 016769 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPK 171 (383)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (383)
.+.......+ +..+..+.. +... .++-+..++
T Consensus 215 ~i~~t~~~e~-t~rl~~h~g--------------------~vhk---------------------------lav~p~sp~ 246 (559)
T KOG1334|consen 215 EILETGYVEN-TKRLAPHEG--------------------PVHK---------------------------LAVEPDSPK 246 (559)
T ss_pred eeccccceec-ceecccccC--------------------ccce---------------------------eeecCCCCC
Confidence 6543211000 000000000 0000 001122222
Q ss_pred eeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC
Q 016769 172 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~ 251 (383)
-+..+ +.|+.+.=.|++++....++.-. ....+.++-..+ .+.-|.+. ..+.+|+.|..+++||.+.-.
T Consensus 247 ~f~S~-geD~~v~~~Dlr~~~pa~~~~cr------~~~~~~~v~L~~-Ia~~P~nt---~~faVgG~dqf~RvYD~R~~~ 315 (559)
T KOG1334|consen 247 PFLSC-GEDAVVFHIDLRQDVPAEKFVCR------EADEKERVGLYT-IAVDPRNT---NEFAVGGSDQFARVYDQRRID 315 (559)
T ss_pred ccccc-ccccceeeeeeccCCccceeeee------ccCCccceeeee-EecCCCCc---cccccCChhhhhhhhcccchh
Confidence 23333 34677777888776643332200 000110111111 11222221 246779999999999986421
Q ss_pred C-----ceeee-ecc-----ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCC------e---eEEeeeeecCCC--C
Q 016769 252 I-----PLTAM-KVH-----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG------S---CVIKKEINLERP--G 309 (383)
Q Consensus 252 ~-----~~~~~-~~h-----~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~------~---~~~~~~~~~~~~--~ 309 (383)
. ++..+ ..| .-.|.++.++.++.-++++=.|-.|.++.-+...+ . ...+...+.|.+ .
T Consensus 316 ~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T 395 (559)
T KOG1334|consen 316 KEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT 395 (559)
T ss_pred hccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc
Confidence 1 11112 112 12478888876655555555677888885433222 1 111111233332 3
Q ss_pred eEEEEE-CCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 310 ISGTSI-RPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 310 i~~~~~-~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
|.++.| -|...|+++|+.=|.|.||+-.+++.+.-+.+-..-|+|+.=+|--..|||.+-|.-||||--
T Consensus 396 VKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 396 VKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 556654 688899999999999999999999988777776668999999999899999999999999965
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=125.43 Aligned_cols=85 Identities=24% Similarity=0.335 Sum_probs=71.3
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
.-+.|.||++=|+|++|+.+|.+|+|||.|-++.|||....+.+..+.. ++...+.++-|.|..+.+.++||+.|..|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-gHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST-GHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec-ccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3467899999999999999999999999999999999987666654421 233568889898876778899999999999
Q ss_pred EeecCC
Q 016769 90 CWDIEN 95 (383)
Q Consensus 90 ~Wd~~~ 95 (383)
++|+..
T Consensus 121 lfdl~~ 126 (758)
T KOG1310|consen 121 LFDLDS 126 (758)
T ss_pred EEeccc
Confidence 999864
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.2e-13 Score=116.83 Aligned_cols=249 Identities=14% Similarity=0.221 Sum_probs=156.6
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..+.+++|.|.-.-..+++|..-|+|=+||+.+.+. ..+. .+.+.....+.
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-d~d~---------v~~f~~hs~~V------------------- 237 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-DKDG---------VYLFTPHSGPV------------------- 237 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-ccCc---------eEEeccCCccc-------------------
Confidence 468899999974445678888999999999953221 0000 00001000000
Q ss_pred ccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCe--eeEeccCcCCCCCCcCCCCCceeeEEE
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQ 220 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~ 220 (383)
.. ..|.+.... .+.+.+.||+||+=|+++... +..+.. ...+++. +
T Consensus 238 -----------------s~-l~F~P~n~s-~i~ssSyDGtiR~~D~~~~i~e~v~s~~~-----------d~~~fs~-~- 285 (498)
T KOG4328|consen 238 -----------------SG-LKFSPANTS-QIYSSSYDGTIRLQDFEGNISEEVLSLDT-----------DNIWFSS-L- 285 (498)
T ss_pred -----------------cc-eEecCCChh-heeeeccCceeeeeeecchhhHHHhhcCc-----------cceeeee-c-
Confidence 00 012222222 233456789999999987542 222210 1111111 1
Q ss_pred eecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCc-eEEEEcCCcEEEEEccCCCCeeE-
Q 016769 221 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSCV- 298 (383)
Q Consensus 221 ~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~~~d~~i~~wdl~~~~~~~~- 298 (383)
.+..+ ...++.+..=|...+||++.++..+..+..|...|..++++|-... ++++|.|++.+|||++....+..
T Consensus 286 d~~~e----~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp 361 (498)
T KOG4328|consen 286 DFSAE----SRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP 361 (498)
T ss_pred cccCC----CccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCc
Confidence 12211 1235566555689999999877656667778889999999987764 68999999999999976544331
Q ss_pred EeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcC----CCceEEEeccccc------ceeEEEEeCCCCEEEEEe
Q 016769 299 IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR----KGSALAILKYHHA------TCNAVSFSSDCKLMASAS 368 (383)
Q Consensus 299 ~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~h~~------~v~~v~~spd~~~las~s 368 (383)
+. ....|.-.|+++.|||.+..|++.+.|.+|+|||.. .-.+..++. |.. ...-.+|.||..+++.|-
T Consensus 362 ~l-st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 362 FL-STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGR 439 (498)
T ss_pred ce-ecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEec
Confidence 11 112355679999999999889999999999999993 233333332 322 235568999999999998
Q ss_pred CCCcEEEEeC
Q 016769 369 EDSTVALWEL 378 (383)
Q Consensus 369 ~d~~i~~w~~ 378 (383)
.-..|-|+|-
T Consensus 440 ~~r~IDv~~~ 449 (498)
T KOG4328|consen 440 YPRPIDVFDG 449 (498)
T ss_pred cCcceeEEcC
Confidence 8888888764
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-13 Score=130.51 Aligned_cols=253 Identities=19% Similarity=0.329 Sum_probs=150.9
Q ss_pred CceeeEEEeC--CCCeEEEecCCCeEEEeeCcccc----ccccccc----ccccce--eeeeeecCCCCcceeEecccCC
Q 016769 19 ASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHR----TVSSSWV----HSAAHG--IVSVATGPSIGLNKVISQGRDG 86 (383)
Q Consensus 19 ~~V~~v~f~~--~~~~L~sgs~D~~v~vW~~~~~~----~~~~~~~----~~~~~~--~~~~~~~~~~~~~~l~s~~~D~ 86 (383)
..|+.+++-. |..+|++|+.||.||||+..... ++...+. ...... ...+.+-. ...+|+++|.-.
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ--~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ--QSGHLLVTGDVR 1187 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh--hCCeEEecCCee
Confidence 4678888865 44689999999999999853221 1111111 111111 12333333 235677777789
Q ss_pred eEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 87 ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
.|||||........ . .+.... .+ .-....-.
T Consensus 1188 ~IRIWDa~~E~~~~----------------d---iP~~s~-------t~-----------------------vTaLS~~~ 1218 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVA----------------D---IPYGSS-------TL-----------------------VTALSADL 1218 (1387)
T ss_pred EEEEEecccceeEe----------------e---cccCCC-------cc-----------------------ceeecccc
Confidence 99999986532100 0 000000 00 00000001
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCe---eeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
..|. ++++|-.||.+|+||.+.... +....++. ....++-..++ .++...+++|+.||.|+
T Consensus 1219 ~~gn--~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~--------~~~~Iv~~slq------~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1219 VHGN--IIAAGFADGSVRVYDRRMAPPDSLVCVYREHN--------DVEPIVHLSLQ------RQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred cCCc--eEEEeecCCceEEeecccCCccccceeecccC--------CcccceeEEee------cCCCcceeeeccCCeEE
Confidence 1222 567889999999999876543 22222211 11113333332 23444699999999999
Q ss_pred EEeCCCC-CCceeeeeccc--c-CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee---eecCCCCeEEEEEC
Q 016769 244 VWDIRNP-GIPLTAMKVHL--E-PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE---INLERPGISGTSIR 316 (383)
Q Consensus 244 ~wdl~~~-~~~~~~~~~h~--~-~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~---~~~~~~~i~~~~~~ 316 (383)
+||+|.+ ......+..|. + ..+++.+++....+++|+. +.|+||++..... ..++.. +....+.+.+++||
T Consensus 1283 ~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FH 1360 (1387)
T KOG1517|consen 1283 LLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFH 1360 (1387)
T ss_pred EEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeec
Confidence 9999983 33233333443 3 4889999988888888887 9999999864321 111111 22334567999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCc
Q 016769 317 PDSKIAATAGWDRRVRIYNYRKGS 340 (383)
Q Consensus 317 p~~~~l~s~~~dg~i~iwd~~~~~ 340 (383)
|---.+|+|+.|.+|.||..+.++
T Consensus 1361 P~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1361 PHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred chhHhhhhccCCceEEEeecCCcC
Confidence 999999999999999999876543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-12 Score=124.74 Aligned_cols=240 Identities=12% Similarity=0.119 Sum_probs=149.8
Q ss_pred cCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCC
Q 016769 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (383)
Q Consensus 17 H~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~ 96 (383)
|...|.+++- .+.+|++|+.+++|.++...++..-..+.-.. -.+-.+++.. ++++++.||.|-.|++-++.+.
T Consensus 55 ~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft--lp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~ 128 (933)
T KOG1274|consen 55 SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARFT--LPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDS 128 (933)
T ss_pred cCceeEEEee--cccceEEeeccceEEEeeCCCCCccceeeeee--ccceEEEEec--CCcEEEeecCceeEEEEecccc
Confidence 7788887765 55599999999999999987765433222111 2344555554 4688999999999999998665
Q ss_pred CCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeec
Q 016769 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVA 176 (383)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (383)
... ..++.+ +.+. .-.++.+.+ .+++++
T Consensus 129 s~~----~~lrgh----------~apV-------------------------------------l~l~~~p~~-~fLAvs 156 (933)
T KOG1274|consen 129 SQE----KVLRGH----------DAPV-------------------------------------LQLSYDPKG-NFLAVS 156 (933)
T ss_pred chh----eeeccc----------CCce-------------------------------------eeeeEcCCC-CEEEEE
Confidence 211 011000 0000 001122222 344444
Q ss_pred cCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceee
Q 016769 177 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 256 (383)
Q Consensus 177 g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~ 256 (383)
+-+|+|++||+.++....++.. ..+-.+..
T Consensus 157 -s~dG~v~iw~~~~~~~~~tl~~-----------------------------------------v~k~n~~~-------- 186 (933)
T KOG1274|consen 157 -SCDGKVQIWDLQDGILSKTLTG-----------------------------------------VDKDNEFI-------- 186 (933)
T ss_pred -ecCceEEEEEcccchhhhhccc-----------------------------------------CCcccccc--------
Confidence 4568888888876654333321 00000000
Q ss_pred eeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEc
Q 016769 257 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 336 (383)
Q Consensus 257 ~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~ 336 (383)
-...+..++|+|++..++..+.|+.|++|+.+.-.. .++...+.....++.+.|+|+|+|||+++.||.|.|||.
T Consensus 187 ---~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~--~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 187 ---LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL--QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred ---ccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee--heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 023455678999988889999999999998764332 222233334445899999999999999999999999999
Q ss_pred CCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcE
Q 016769 337 RKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTV 373 (383)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i 373 (383)
++... ......|.+++|.|+..-+-.-..-|+.
T Consensus 262 ~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 262 DTHER----HEFKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred ccchh----ccccceeEEEecCCCCCeeEEEeecccc
Confidence 87332 1124579999999988755433333333
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=118.35 Aligned_cols=146 Identities=21% Similarity=0.234 Sum_probs=113.6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeC--CCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCC
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE--SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 309 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~ 309 (383)
.++++...|.|++||..+ +..+..+++|...++.+.|.. ....+.+|+.||+|++||++.......+..... ....
T Consensus 42 ~vav~lSngsv~lyd~~t-g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~-~~~~ 119 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGT-GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ-SGTP 119 (376)
T ss_pred eEEEEecCCeEEEEeccc-hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC-CCCc
Confidence 467788899999999987 455778888888788888843 456789999999999999987654333322211 1235
Q ss_pred eEEEEECCCCcEEEEEe----CCCcEEEEEcCCCce-EEEe-cccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 310 ISGTSIRPDSKIAATAG----WDRRVRIYNYRKGSA-LAIL-KYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~----~dg~i~iwd~~~~~~-~~~~-~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
..+++.+..++.+++|+ .|-.+.+||++..++ +..+ ..|...|++|.|+|... +|+|||-||.|.|||+.
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 67777777788888876 467899999988766 5544 46999999999999765 99999999999999995
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=113.35 Aligned_cols=148 Identities=20% Similarity=0.283 Sum_probs=111.8
Q ss_pred eEEEEEeCCCcEEEEeCCCCC--CceeeeeccccCeEEEEEeCCC-CceEEEEcCCcEEEEEccCCCCeeEEeeeeecCC
Q 016769 231 VNVLAGYEDGSILVWDIRNPG--IPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 307 (383)
Q Consensus 231 ~~~~sg~~dg~i~~wdl~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~ 307 (383)
.++.+++-|-+..|||++++. ..-..+-.|-..|..++|...+ +.+++.|.||.+|++||+....+..+... ....
T Consensus 164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~-p~~~ 242 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED-PSPS 242 (364)
T ss_pred ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC-CCCC
Confidence 467889999999999998741 1234466799999999997644 46799999999999999876544433211 1112
Q ss_pred CCeEEEEECCC-CcEEEEEeCC-CcEEEEEcCCC-ceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 308 PGISGTSIRPD-SKIAATAGWD-RRVRIYNYRKG-SALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 308 ~~i~~~~~~p~-~~~l~s~~~d-g~i~iwd~~~~-~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
...-.++++++ .+|+|+-..| .+|.|.|++-. .++..+++|++.|+.++|.|-.+ +|+|++.|..+.+||+.
T Consensus 243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred CcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 23455666653 4677765544 57889999764 56789999999999999999765 99999999999999995
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-11 Score=118.17 Aligned_cols=301 Identities=18% Similarity=0.267 Sum_probs=171.2
Q ss_pred ecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcc--cccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeec
Q 016769 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~ 93 (383)
.|+..+++.++||.++++|+|-.||+|.+|.-.. ......-..|-+...+.+++|+. +|.+|+|||..+.+-+|.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~--~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS--DGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec--CCceEeecccceEEEEEee
Confidence 5778899999999999999999999999998544 22111111243334688899988 5789999999999999999
Q ss_pred CCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCcee
Q 016769 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYM 173 (383)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (383)
++++..-.|.+ ++ +- .. ...++++..+.
T Consensus 281 ~T~~kqfLPRL----gs-----------~I-----------------------------------~~--i~vS~ds~~~s 308 (792)
T KOG1963|consen 281 ETGKKQFLPRL----GS-----------PI-----------------------------------LH--IVVSPDSDLYS 308 (792)
T ss_pred cCCCccccccc----CC-----------ee-----------------------------------EE--EEEcCCCCeEE
Confidence 98752111100 00 00 00 01123333333
Q ss_pred eeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCc
Q 016769 174 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 253 (383)
Q Consensus 174 ~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~ 253 (383)
++.+ |+.|.+-.+.+......+...... .+......+.+...+. +-|. . ..++-.+..|.|.+||+-+....
T Consensus 309 l~~~--DNqI~li~~~dl~~k~tIsgi~~~-~~~~k~~~~~l~t~~~-idpr--~--~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 309 LVLE--DNQIHLIKASDLEIKSTISGIKPP-TPSTKTRPQSLTTGVS-IDPR--T--NSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred EEec--CceEEEEeccchhhhhhccCccCC-CccccccccccceeEE-EcCC--C--CceeecCCCceEEEEecccccee
Confidence 3322 445554443332221222111100 0010111122222221 2221 1 12455778899999998764432
Q ss_pred eeeee-----------ccccCeEEEEEeCCCCceEEE--------EcC--CcEEEEEccCCCCeeEEeeee-ecCCCCeE
Q 016769 254 LTAMK-----------VHLEPVLCLSIDESCNGGISG--------GAD--QKIVLYNLDHSTGSCVIKKEI-NLERPGIS 311 (383)
Q Consensus 254 ~~~~~-----------~h~~~v~~~~~~~~~~~~~s~--------~~d--~~i~~wdl~~~~~~~~~~~~~-~~~~~~i~ 311 (383)
..+. .+...+..+..+..+...++. ..| ..+++|-.+..+....+...+ ..|+..+.
T Consensus 381 -~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~v 459 (792)
T KOG1963|consen 381 -YKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFV 459 (792)
T ss_pred -eeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeE
Confidence 2111 122234455555555554443 223 346789877665555444332 34444444
Q ss_pred EEEE-CCCCc-EEEEEeCCCcEEEEEcC------CCceEE----EecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 312 GTSI-RPDSK-IAATAGWDRRVRIYNYR------KGSALA----ILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 312 ~~~~-~p~~~-~l~s~~~dg~i~iwd~~------~~~~~~----~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
...| +|... .+++++.||.+++|-+. .....+ .-..|..++.+.+||.||.. .+.|.|++|.+||..
T Consensus 460 at~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsl-la~s~~~~Itiwd~~ 538 (792)
T KOG1963|consen 460 ATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSL-LAVSFDDTITIWDYD 538 (792)
T ss_pred EEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcE-EEEecCCEEEEecCC
Confidence 4444 44333 78999999999999883 222222 12247889999999999955 557788899999986
Q ss_pred C
Q 016769 380 P 380 (383)
Q Consensus 380 ~ 380 (383)
.
T Consensus 539 ~ 539 (792)
T KOG1963|consen 539 T 539 (792)
T ss_pred C
Confidence 4
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-14 Score=138.10 Aligned_cols=192 Identities=21% Similarity=0.346 Sum_probs=130.0
Q ss_pred eeeccCCcceEEEEecCCC---CeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
++++|..||.|.+||...- .....+... -.+.+. +.++ .|.+. ..+.+++|+.||.|.|||+++
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~-------~~h~G~--V~gL-DfN~~---q~nlLASGa~~geI~iWDlnn 148 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATK-------SKHTGP--VLGL-DFNPF---QGNLLASGADDGEILIWDLNK 148 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhh-------cccCCc--eeee-ecccc---CCceeeccCCCCcEEEeccCC
Confidence 5778888999999997542 111111110 011222 2221 23222 223688999999999999998
Q ss_pred CCCceee-eeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCc-EEEEEe
Q 016769 250 PGIPLTA-MKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK-IAATAG 326 (383)
Q Consensus 250 ~~~~~~~-~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~l~s~~ 326 (383)
...+... -+...+.|.+++|...-. .|++++.++++.|||++.... .+........-.++.++|+|+.. .+++++
T Consensus 149 ~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p--ii~ls~~~~~~~~S~l~WhP~~aTql~~As 226 (1049)
T KOG0307|consen 149 PETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP--IIKLSDTPGRMHCSVLAWHPDHATQLLVAS 226 (1049)
T ss_pred cCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc--ccccccCCCccceeeeeeCCCCceeeeeec
Confidence 6655433 122456789999976554 467888999999999986532 11111111123478999999974 455555
Q ss_pred CCC---cEEEEEcCC-CceEEEecccccceeEEEEeCCC-CEEEEEeCCCcEEEEeCC
Q 016769 327 WDR---RVRIYNYRK-GSALAILKYHHATCNAVSFSSDC-KLMASASEDSTVALWELY 379 (383)
Q Consensus 327 ~dg---~i~iwd~~~-~~~~~~~~~h~~~v~~v~~spd~-~~las~s~d~~i~~w~~~ 379 (383)
.|. .|.+||++. ..+++++.+|+..|.++.|++.+ ++|+|++.|+.|.+||..
T Consensus 227 ~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 227 GDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred CCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 544 799999965 45667788999999999999876 799999999999999974
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-11 Score=110.06 Aligned_cols=264 Identities=11% Similarity=0.145 Sum_probs=144.5
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEec-CCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEec-ccCCe
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGT-TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDGT 87 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs-~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~D~t 87 (383)
.+.++. +.+....|+++|++++|+.++ .++.|.+|++.....+..............+.+++ +++.++++ ..++.
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~--~g~~l~v~~~~~~~ 103 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDH--QGRFLFSASYNANC 103 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECC--CCCEEEEEEcCCCe
Confidence 334443 346677899999999887664 57899999986322221111111111234567777 35666654 46899
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
+.+|++++.......... .... . ... ...+.+
T Consensus 104 v~v~~~~~~g~~~~~~~~-------------~~~~-------~--------------------------~~~--~~~~~p 135 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQI-------------IEGL-------E--------------------------GCH--SANIDP 135 (330)
T ss_pred EEEEEECCCCCCCCceee-------------ccCC-------C--------------------------ccc--EeEeCC
Confidence 999999643211100000 0000 0 000 011234
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEE-eCCCcEEEEe
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWD 246 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg-~~dg~i~~wd 246 (383)
++ +++.++...++.|.+||+++...+............. ...+. + .|.|+ +. .+.+. ..+++|.+||
T Consensus 136 ~g-~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g--~~p~~--~---~~~pd---g~-~lyv~~~~~~~v~v~~ 203 (330)
T PRK11028 136 DN-RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG--AGPRH--M---VFHPN---QQ-YAYCVNELNSSVDVWQ 203 (330)
T ss_pred CC-CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC--CCCce--E---EECCC---CC-EEEEEecCCCEEEEEE
Confidence 44 4566666777899999997743322110000000000 00011 1 24443 22 34444 4589999999
Q ss_pred CCCC-CC--ceeeeecc------ccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEEC
Q 016769 247 IRNP-GI--PLTAMKVH------LEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 316 (383)
Q Consensus 247 l~~~-~~--~~~~~~~h------~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (383)
+... +. .+..+..+ ......+.++|+++.++++. .++.|.+|+++..+....+....... .....+.|+
T Consensus 204 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~ 282 (330)
T PRK11028 204 LKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNID 282 (330)
T ss_pred EeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEEC
Confidence 9742 11 11222111 11223577899998887775 47889999997654433333332222 345678999
Q ss_pred CCCcEEEEEeC-CCcEEEEEcC
Q 016769 317 PDSKIAATAGW-DRRVRIYNYR 337 (383)
Q Consensus 317 p~~~~l~s~~~-dg~i~iwd~~ 337 (383)
|+|++|+++.. +++|.+|+++
T Consensus 283 ~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 283 HSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCEEEEEEccCCcEEEEEEc
Confidence 99999888775 8999999885
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-11 Score=117.75 Aligned_cols=334 Identities=17% Similarity=0.220 Sum_probs=189.8
Q ss_pred eEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCc-ceeEecccCCeEEEeecCCCCCCCC
Q 016769 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCWDIENGGLSSN 101 (383)
Q Consensus 23 ~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~D~ti~~Wd~~~~~~~~~ 101 (383)
.-.|++|++.|+- ..+..|.|+-+.++.|+..+..|. ..+..+.+.+.... ..+++++.||+|++||..+++..++
T Consensus 21 ~avfSnD~k~l~~-~~~~~V~VyS~~Tg~~i~~l~~~~--a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt 97 (792)
T KOG1963|consen 21 PAVFSNDAKFLFL-CTGNFVKVYSTATGECITSLEDHT--APLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT 97 (792)
T ss_pred ccccccCCcEEEE-eeCCEEEEEecchHhhhhhccccc--CccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence 3468999998884 556689999999999988765554 34566666554222 4677999999999999998865432
Q ss_pred CeeeeecCceee----ee---EEeeccccccccccCCCCccceeccCccccc-CccccccccCCccceecccCCCCCcee
Q 016769 102 PSLTIKTNSYHF----CK---LSLVKEPYANAKQANEPKDCYEREVGETVDT-DSLCDSKESNRSFEIIDDVPAEGPKYM 173 (383)
Q Consensus 102 ~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (383)
.....+.+.... .. ...+.............+.+........... ....+..........+. ....+ .+.
T Consensus 98 ~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~-~~~~g-e~~ 175 (792)
T KOG1963|consen 98 FDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV-DNNSG-EFK 175 (792)
T ss_pred EecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE-EcCCc-eEE
Confidence 211111111000 00 0000000000000000000000000000000 00000000000000000 01111 111
Q ss_pred eeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe-CC--CC
Q 016769 174 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD-IR--NP 250 (383)
Q Consensus 174 ~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd-l~--~~ 250 (383)
.+. ....+.+|....+... .... .....+. +......++|.. ..+++|..||.|.+|. +. ..
T Consensus 176 ~i~--~~~~~~~~~v~~~~~~-~~~~---~~~~~Ht-----f~~t~~~~spn~----~~~Aa~d~dGrI~vw~d~~~~~~ 240 (792)
T KOG1963|consen 176 GIV--HMCKIHIYFVPKHTKH-TSSR---DITVHHT-----FNITCVALSPNE----RYLAAGDSDGRILVWRDFGSSDD 240 (792)
T ss_pred EEE--EeeeEEEEEeccccee-eccc---hhhhhhc-----ccceeEEecccc----ceEEEeccCCcEEEEeccccccc
Confidence 111 2345777877664411 1110 0001111 111223345542 3578899999999994 33 12
Q ss_pred CCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCc
Q 016769 251 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 330 (383)
Q Consensus 251 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~ 330 (383)
....+.+.-|..+|.+++|+.+|.++++||..+.+.+|.++... . +.+..-.+.|..+.++||+.+.+....|..
T Consensus 241 ~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--k---qfLPRLgs~I~~i~vS~ds~~~sl~~~DNq 315 (792)
T KOG1963|consen 241 SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--K---QFLPRLGSPILHIVVSPDSDLYSLVLEDNQ 315 (792)
T ss_pred cccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--c---ccccccCCeeEEEEEcCCCCeEEEEecCce
Confidence 23356678889999999999999999999999999999987543 1 223344567999999999999999999999
Q ss_pred EEEEEcCCCceEEEecc-----------cccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 331 VRIYNYRKGSALAILKY-----------HHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 331 i~iwd~~~~~~~~~~~~-----------h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
|.+..+.+.....++++ .+.-...++++|.-+.++-.+..+.|.+||++..
T Consensus 316 I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 316 IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccc
Confidence 99998866543333322 2334567789997788999999999999999754
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=108.70 Aligned_cols=158 Identities=21% Similarity=0.364 Sum_probs=115.0
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
.+..+++++|-.++.+-+||+.++..+..+++-..+.+...++.+..+..... +.-+ .=++|+.+..+..|.+
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya---s~~~----rGisgga~dkl~~~Sl 234 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA---SSCD----RGISGGADDKLVMYSL 234 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec---hhhc----CCcCCCccccceeeee
Confidence 34567888999999999999999987777777666666555565555543322 2111 1256788888999988
Q ss_pred CCCC--Cce-eeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEE
Q 016769 248 RNPG--IPL-TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 324 (383)
Q Consensus 248 ~~~~--~~~-~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s 324 (383)
.-.. ..+ ..++-.+-.|..+.+-++++.++++|.|++||+|+.++.+. + ..+++|..+|++++|+|+...+|+
T Consensus 235 ~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p--L--AVLkyHsagvn~vAfspd~~lmAa 310 (323)
T KOG0322|consen 235 NHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP--L--AVLKYHSAGVNAVAFSPDCELMAA 310 (323)
T ss_pred ccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc--h--hhhhhhhcceeEEEeCCCCchhhh
Confidence 6431 111 11222233467788888889999999999999999875432 1 235678889999999999999999
Q ss_pred EeCCCcEEEEEc
Q 016769 325 AGWDRRVRIYNY 336 (383)
Q Consensus 325 ~~~dg~i~iwd~ 336 (383)
++.|++|.+|++
T Consensus 311 askD~rISLWkL 322 (323)
T KOG0322|consen 311 ASKDARISLWKL 322 (323)
T ss_pred ccCCceEEeeec
Confidence 999999999987
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=109.93 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=105.5
Q ss_pred eccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEEC-C-CCcEEEEEeCCCcEEEEE
Q 016769 258 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR-P-DSKIAATAGWDRRVRIYN 335 (383)
Q Consensus 258 ~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~-p-~~~~l~s~~~dg~i~iwd 335 (383)
.+|.+-|.++.||..|+.+++|+.|++++|||+++.++........+.+.+.|..+.+- | -|+.+|+++.|++++||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 46788899999999999999999999999999988888887777888899999999884 4 488999999999999997
Q ss_pred cCC------C---ceEEEecccccceeEEEEeCC--CCEEEEEeCCCcEEEEeCCCC
Q 016769 336 YRK------G---SALAILKYHHATCNAVSFSSD--CKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 336 ~~~------~---~~~~~~~~h~~~v~~v~~spd--~~~las~s~d~~i~~w~~~~~ 381 (383)
-.. + ....++..-...|.+|.|.|. |-+||+++.||++|||+..+|
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 621 1 123456667788999999995 559999999999999998766
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-13 Score=125.01 Aligned_cols=144 Identities=19% Similarity=0.249 Sum_probs=114.9
Q ss_pred EeCCCcEEEEeCCCCCC-ceeeeec--cccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEE---eeeeecCCC
Q 016769 236 GYEDGSILVWDIRNPGI-PLTAMKV--HLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVI---KKEINLERP 308 (383)
Q Consensus 236 g~~dg~i~~wdl~~~~~-~~~~~~~--h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~---~~~~~~~~~ 308 (383)
.+.-|.|-||+++.++. +-..+.. ....|..+.|+|-.. .++.++.|+.|++|.+.......-. .+.+..+..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 45678999999988764 2222221 234688888888544 6899999999999998654322111 234566778
Q ss_pred CeEEEEECCCC-cEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 309 GISGTSIRPDS-KIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 309 ~i~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.|+.+.|+|=. ..++++++|-+|++||+..++....+.+|...|..++|||||+.+|+.+.||+|++|+-.
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPR 750 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCC
Confidence 89999999853 578999999999999999999999999999999999999999999999999999999864
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-12 Score=111.01 Aligned_cols=142 Identities=20% Similarity=0.367 Sum_probs=113.5
Q ss_pred EEEEEeCCCcEEEEeCCCC------CCceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeeee
Q 016769 232 NVLAGYEDGSILVWDIRNP------GIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEIN 304 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~------~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~ 304 (383)
.+++|++|-+|+||++=.. ..+...+.+|...|.-+.|+|... .|+++|.|++|.+||+..... ++. +.
T Consensus 96 vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea--li~--l~ 171 (472)
T KOG0303|consen 96 VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA--LIT--LD 171 (472)
T ss_pred eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce--eee--cC
Confidence 5788999999999998432 345778899999999999998765 578999999999999976543 222 22
Q ss_pred cCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccc-eeEEEEeCCCCEEEEE---eCCCcEEEEeC
Q 016769 305 LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT-CNAVSFSSDCKLMASA---SEDSTVALWEL 378 (383)
Q Consensus 305 ~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~v~~spd~~~las~---s~d~~i~~w~~ 378 (383)
|...|.+++|+-||.++++++.|++|||||.++++.+..-.+|++. -..+.|-.+|+.+-|| ..+..+-|||-
T Consensus 172 -hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 172 -HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDP 248 (472)
T ss_pred -CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCc
Confidence 6678999999999999999999999999999999998766778753 4556687888854443 34667888875
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-12 Score=106.10 Aligned_cols=130 Identities=18% Similarity=0.384 Sum_probs=95.4
Q ss_pred cEEEEeCCCCCCceeeeecc-ccCeEEEEEeCCCCceEE--EEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC
Q 016769 241 SILVWDIRNPGIPLTAMKVH-LEPVLCLSIDESCNGGIS--GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 317 (383)
Q Consensus 241 ~i~~wdl~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~s--~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p 317 (383)
...+|.++....+...+... ..+|..++|+|++..++. |..++.|.+||++. ... .......++.+.|+|
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---~~i----~~~~~~~~n~i~wsP 110 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---KKI----FSFGTQPRNTISWSP 110 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---cEe----EeecCCCceEEEECC
Confidence 34555554434444444433 347999999999988654 34567899999862 111 222345688999999
Q ss_pred CCcEEEEEeCC---CcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeC------CCcEEEEeCC
Q 016769 318 DSKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE------DSTVALWELY 379 (383)
Q Consensus 318 ~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~------d~~i~~w~~~ 379 (383)
+|++|+.++.+ |.+.+||+++.+.+.... |. .+..++|||||++|++++. |+.++||++.
T Consensus 111 ~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 111 DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 99999998854 669999999888887664 33 5789999999999998774 8899999873
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-11 Score=107.46 Aligned_cols=176 Identities=17% Similarity=0.266 Sum_probs=124.2
Q ss_pred CCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeee
Q 016769 178 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 257 (383)
Q Consensus 178 ~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~ 257 (383)
.+.+.+++.+...+..++.+.-+ + .+++ |. + ++++++.+-++. |.||||+.-. ++.++
T Consensus 65 ~qpr~Lkv~~~Kk~~~ICe~~fp---------t--~IL~--Vr-m------Nr~RLvV~Lee~-IyIydI~~Mk-lLhTI 122 (391)
T KOG2110|consen 65 KQPRKLKVVHFKKKTTICEIFFP---------T--SILA--VR-M------NRKRLVVCLEES-IYIYDIKDMK-LLHTI 122 (391)
T ss_pred CCCceEEEEEcccCceEEEEecC---------C--ceEE--EE-E------ccceEEEEEccc-EEEEecccce-eehhh
Confidence 44467888888777766665421 1 1222 21 1 134677776655 9999998632 34433
Q ss_pred e---ccccCeEEEEEeCCCCceEE--EEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCc-E
Q 016769 258 K---VHLEPVLCLSIDESCNGGIS--GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR-V 331 (383)
Q Consensus 258 ~---~h~~~v~~~~~~~~~~~~~s--~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~-i 331 (383)
. .+...+..++++....+++. .-.-|.|.+||+..-+.. ..+..|.+.+.+++|+++|.+||++|..|+ |
T Consensus 123 ~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v----~~I~aH~~~lAalafs~~G~llATASeKGTVI 198 (391)
T KOG2110|consen 123 ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPV----NTINAHKGPLAALAFSPDGTLLATASEKGTVI 198 (391)
T ss_pred hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceee----eEEEecCCceeEEEECCCCCEEEEeccCceEE
Confidence 2 12334555666655445543 224688999998754322 234578899999999999999999999886 6
Q ss_pred EEEEcCCCceEEEecc--cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 332 RIYNYRKGSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 332 ~iwd~~~~~~~~~~~~--h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
|+|.+.+|+.++.++. ..-.|.+++|+||+++|++.|..++|++|.+.
T Consensus 199 RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 8999999999988864 34468999999999999999999999999885
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.6e-13 Score=117.09 Aligned_cols=147 Identities=22% Similarity=0.316 Sum_probs=122.9
Q ss_pred EEEEEeCCCcEEEEeCCCCC--------CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccC------CC---
Q 016769 232 NVLAGYEDGSILVWDIRNPG--------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH------ST--- 294 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~------~~--- 294 (383)
.+.+|+.|..|++|.+.... ..+..+..|...|+++.|++++..+++|+.++.+.+|-... .+
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 47899999999999875321 12345678999999999999999999999999999997651 11
Q ss_pred ---CeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCC
Q 016769 295 ---GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS 371 (383)
Q Consensus 295 ---~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~ 371 (383)
.....++....+...+..++++|+++++++++-|..+++||+..|.....+..|...++-++|.|-++++++-|.|.
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 11233344556777899999999999999999999999999999999999999999999999999999999999998
Q ss_pred cEEEEeC
Q 016769 372 TVALWEL 378 (383)
Q Consensus 372 ~i~~w~~ 378 (383)
..+.+.+
T Consensus 188 ~~~~~~~ 194 (434)
T KOG1009|consen 188 HPEGFSA 194 (434)
T ss_pred ccceeee
Confidence 7666654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-12 Score=109.47 Aligned_cols=147 Identities=13% Similarity=0.224 Sum_probs=116.2
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee---------
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE--------- 302 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~--------- 302 (383)
.++.|..||.|-|||+.+.+ +-+.+.+|..||.+++|++++..|++++.|..|++||+..++....+...
T Consensus 37 ~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~h 115 (405)
T KOG1273|consen 37 YLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWH 115 (405)
T ss_pred eeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeec
Confidence 57889999999999998743 45667899999999999999999999999999999999766532211100
Q ss_pred -----------ee-------cC-----------CC----CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccc
Q 016769 303 -----------IN-------LE-----------RP----GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH 349 (383)
Q Consensus 303 -----------~~-------~~-----------~~----~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~ 349 (383)
++ .. .+ ......|.+-|+|+++|..-|++.++|..+.+.+..++--.
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits 195 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS 195 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech
Confidence 00 00 00 01123477889999999999999999999998887665433
Q ss_pred -cceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 350 -ATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 350 -~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
..|..+.|+..|+.|+.-+.|..||.|++.
T Consensus 196 ~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 196 VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 678999999999999999999999999886
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-11 Score=100.46 Aligned_cols=140 Identities=14% Similarity=0.194 Sum_probs=98.2
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee--e---ecC-
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE--I---NLE- 306 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~--~---~~~- 306 (383)
++.++.|+.+.-||++++ .....+++|++.+-++.--.....+++|+.||++++||+.......++... . ..+
T Consensus 129 i~~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 129 ILFAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred EEEecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 566668999999999985 457789999999999987444456799999999999999765433322211 0 101
Q ss_pred CCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 307 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 307 ~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
...|-+++.+ ...+++|+ ..++.+|+++..++..++. ....+..+.|-- +.+.++++.+.|.-|.+.
T Consensus 208 g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 208 GKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEe-cccceeEeeeec--ceEEEeccccceeeeeec
Confidence 1224445544 44778765 6679999999888776553 556677778853 467788888888888663
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-11 Score=103.63 Aligned_cols=253 Identities=16% Similarity=0.201 Sum_probs=146.1
Q ss_pred eecCCceeeEEEeCCC-----CeEEEecCCCeEEEeeCcc--ccc--ccccccc---cccceeeeeeecCCCCcceeEec
Q 016769 15 RGHRASVTDVCFHQTK-----PILFAGTTGGELRIWDTVQ--HRT--VSSSWVH---SAAHGIVSVATGPSIGLNKVISQ 82 (383)
Q Consensus 15 ~gH~~~V~~v~f~~~~-----~~L~sgs~D~~v~vW~~~~--~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~l~s~ 82 (383)
..|.-+++.+-|.|+. ++|||.|. .+|+|.+.. .+. ...+..+ .....+.+..+.. .+.+++.+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne-~dp~~igtS 169 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNE-VDPNLIGTS 169 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCccccccccc-CCcceeEee
Confidence 3688899999999986 36776544 599999763 211 1111111 1112334443332 245788899
Q ss_pred ccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCcccee
Q 016769 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEII 162 (383)
Q Consensus 83 ~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (383)
|.|.|.-+||++++......+ .++. ..+.+++++++
T Consensus 170 SiDTTCTiWdie~~~~~~vkT-------------QLIA----------HDKEV~DIaf~--------------------- 205 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGVSGTVKT-------------QLIA----------HDKEVYDIAFL--------------------- 205 (364)
T ss_pred cccCeEEEEEEeeccccceee-------------EEEe----------cCcceeEEEec---------------------
Confidence 999999999999863211111 1110 11112222221
Q ss_pred cccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEE-EeCCCc
Q 016769 163 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYEDGS 241 (383)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-g~~dg~ 241 (383)
..+.+ ++++-+.||.+|++||+....-.-+=++ ..+....+++ .++ .++...+++ +.....
T Consensus 206 ----~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~-------p~~~~pLlRL-----swn-kqDpnymATf~~dS~~ 267 (364)
T KOG0290|consen 206 ----KGSRD-VFASVGADGSVRMFDLRSLEHSTIIYED-------PSPSTPLLRL-----SWN-KQDPNYMATFAMDSNK 267 (364)
T ss_pred ----cCccc-eEEEecCCCcEEEEEecccccceEEecC-------CCCCCcceee-----ccC-cCCchHHhhhhcCCce
Confidence 11122 3334455899999999886643322111 0111122221 111 122223333 556678
Q ss_pred EEEEeCCCCCCceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeee-ecCCCCeEEEEECCC-
Q 016769 242 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEI-NLERPGISGTSIRPD- 318 (383)
Q Consensus 242 i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~-~~~~~~i~~~~~~p~- 318 (383)
|.+-|+|.+..++..+..|...|+.++|.|... .+.++|.|..+.+||++..-........+ -...++|+.+.++|.
T Consensus 268 V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 268 VVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQ 347 (364)
T ss_pred EEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccC
Confidence 999999999999999999999999999977544 57899999999999997543311111111 113457888888854
Q ss_pred CcEEEEEeCCCcEEE
Q 016769 319 SKIAATAGWDRRVRI 333 (383)
Q Consensus 319 ~~~l~s~~~dg~i~i 333 (383)
+..|+. +.++++.+
T Consensus 348 ~Dwiai-~~~kklei 361 (364)
T KOG0290|consen 348 PDWIAI-CFGKKLEI 361 (364)
T ss_pred CCEEEE-EecCeeeE
Confidence 345554 44555554
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-11 Score=105.87 Aligned_cols=85 Identities=26% Similarity=0.503 Sum_probs=63.6
Q ss_pred eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccc------ccc---cccc-----cccccceeeeeeecCCCCc
Q 016769 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH------RTV---SSSW-----VHSAAHGIVSVATGPSIGL 76 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~------~~~---~~~~-----~~~~~~~~~~~~~~~~~~~ 76 (383)
..+|..|...|++|.|+|+|.+||||+++|.|.+|....- ++. ...| ..++...++-+++++ ++
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~--d~ 135 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP--DS 135 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC--CC
Confidence 4578899999999999999999999999999999986511 100 0000 011123456667777 46
Q ss_pred ceeEecccCCeEEEeecCCCC
Q 016769 77 NKVISQGRDGTVKCWDIENGG 97 (383)
Q Consensus 77 ~~l~s~~~D~ti~~Wd~~~~~ 97 (383)
..+++++.|+++++||+..|.
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred ceeeeeeccceEEEEEeccce
Confidence 788999999999999998874
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.3e-11 Score=100.91 Aligned_cols=178 Identities=18% Similarity=0.241 Sum_probs=115.8
Q ss_pred ceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeecc
Q 016769 181 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 260 (383)
Q Consensus 181 ~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h 260 (383)
+++.|||-...+++..+.....+ +..+ +.. .++++. -.+.|.+|.....-..+..+.--
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I---------~~V~-----l~r------~riVvv-l~~~I~VytF~~n~k~l~~~et~ 133 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEI---------KAVK-----LRR------DRIVVV-LENKIYVYTFPDNPKLLHVIETR 133 (346)
T ss_pred ceEEEEecccCcEEEEEEeccce---------eeEE-----EcC------CeEEEE-ecCeEEEEEcCCChhheeeeecc
Confidence 47999996666666665432211 1111 111 123322 36789999876332223322211
Q ss_pred ccCeEEEEEeCCC-CceEE--EEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCc-EEEEEc
Q 016769 261 LEPVLCLSIDESC-NGGIS--GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR-VRIYNY 336 (383)
Q Consensus 261 ~~~v~~~~~~~~~-~~~~s--~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~-i~iwd~ 336 (383)
..|---++..+.. ..+++ |-.-|.|.|-||...... ....+..|.+.|.+++++-+|..+|++|..|| |||||.
T Consensus 134 ~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt 211 (346)
T KOG2111|consen 134 SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDT 211 (346)
T ss_pred cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEc
Confidence 1122122222221 22222 345588999998643221 12345678899999999999999999999996 799999
Q ss_pred CCCceEEEecc--cccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 337 RKGSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 337 ~~~~~~~~~~~--h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
.+|+.+..++. .+..|.+++||||..+||.+|+-|++++|.+.++
T Consensus 212 ~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 212 EDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999887753 4567999999999999999999999999999764
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.8e-12 Score=101.99 Aligned_cols=145 Identities=19% Similarity=0.265 Sum_probs=110.0
Q ss_pred EEEEEeCCCcEEEEeCCC---------CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCe----eE
Q 016769 232 NVLAGYEDGSILVWDIRN---------PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS----CV 298 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~----~~ 298 (383)
.+++|..+|+|.++.+++ ++.++-..++|..|+..+.|.. ..+++ +.||.|+=|..+....+ .+
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls-~gdG~V~gw~W~E~~es~~~K~l 100 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLS-GGDGLVYGWEWNEEEESLATKRL 100 (325)
T ss_pred EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheee-ccCceEEEeeehhhhhhccchhh
Confidence 577899999999998853 1234455688999999999973 33455 45799998876543321 11
Q ss_pred Eee--ee---ecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcE
Q 016769 299 IKK--EI---NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTV 373 (383)
Q Consensus 299 ~~~--~~---~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i 373 (383)
+.. .+ ..+...|+++.+.|..+.++.++.|+.++-||+++|+....+++|...|.++.--.....+.||++||++
T Consensus 101 we~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtv 180 (325)
T KOG0649|consen 101 WEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTV 180 (325)
T ss_pred hhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccE
Confidence 111 11 1133568999999988878888899999999999999999999999999999984455578999999999
Q ss_pred EEEeCC
Q 016769 374 ALWELY 379 (383)
Q Consensus 374 ~~w~~~ 379 (383)
|+||..
T Consensus 181 RvWd~k 186 (325)
T KOG0649|consen 181 RVWDTK 186 (325)
T ss_pred EEEecc
Confidence 999975
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-10 Score=109.53 Aligned_cols=147 Identities=20% Similarity=0.195 Sum_probs=98.8
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeee----ec-------cccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCee-EE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAM----KV-------HLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSC-VI 299 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~----~~-------h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~-~~ 299 (383)
+++++.||.|+.|+++.-..|.... .. -...+.++.|.+... .++.|+.+|.|..=+-...+... ..
T Consensus 308 f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~ 387 (555)
T KOG1587|consen 308 FFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVS 387 (555)
T ss_pred eEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccc
Confidence 5666778888888765432221110 11 123567788855444 46788888887652222111111 00
Q ss_pred ---eeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcC-CCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEE
Q 016769 300 ---KKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR-KGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVA 374 (383)
Q Consensus 300 ---~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~ 374 (383)
......+.+.+..+.++|-+.-+...+.|.+++||... ...++..+..+...+.+++|||--. .++++..||+|.
T Consensus 388 ~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 388 YKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred ccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCcee
Confidence 11234566789999999987655555559999999998 6777877888888899999999766 788899999999
Q ss_pred EEeCC
Q 016769 375 LWELY 379 (383)
Q Consensus 375 ~w~~~ 379 (383)
+|||-
T Consensus 468 iWDLl 472 (555)
T KOG1587|consen 468 IWDLL 472 (555)
T ss_pred hhhhh
Confidence 99984
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.1e-09 Score=88.27 Aligned_cols=143 Identities=13% Similarity=0.282 Sum_probs=99.5
Q ss_pred cceEEEEecC-CCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC-ceeee
Q 016769 180 LSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-PLTAM 257 (383)
Q Consensus 180 ~~~i~~Wdl~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~-~~~~~ 257 (383)
.+.|.+|... +.+++..+.- ..+.+++|... |..+ ....+.-|..-|+|.|-|+.+... +-..+
T Consensus 112 ~~~I~VytF~~n~k~l~~~et---------~~NPkGlC~~~----~~~~-k~~LafPg~k~GqvQi~dL~~~~~~~p~~I 177 (346)
T KOG2111|consen 112 ENKIYVYTFPDNPKLLHVIET---------RSNPKGLCSLC----PTSN-KSLLAFPGFKTGQVQIVDLASTKPNAPSII 177 (346)
T ss_pred cCeEEEEEcCCChhheeeeec---------ccCCCceEeec----CCCC-ceEEEcCCCccceEEEEEhhhcCcCCceEE
Confidence 3578999876 4444444431 11234566432 2211 111223477889999999986433 23568
Q ss_pred eccccCeEEEEEeCCCCceEEEEcCCc-EEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEc
Q 016769 258 KVHLEPVLCLSIDESCNGGISGGADQK-IVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 336 (383)
Q Consensus 258 ~~h~~~v~~~~~~~~~~~~~s~~~d~~-i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~ 336 (383)
+.|...|.|++...+|..++++|..|+ |||||..+.+....+ .-......|.+++|+||..++|++|.-||++||.+
T Consensus 178 ~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~--RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 178 NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL--RRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee--ecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 899999999999999999999999998 699998765532222 11223356999999999999999999999999988
Q ss_pred CC
Q 016769 337 RK 338 (383)
Q Consensus 337 ~~ 338 (383)
+.
T Consensus 256 ~~ 257 (346)
T KOG2111|consen 256 RD 257 (346)
T ss_pred ec
Confidence 54
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-10 Score=108.08 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=75.6
Q ss_pred eCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEEC
Q 016769 237 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 316 (383)
Q Consensus 237 ~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (383)
..++...||++.........+ .+.. ....+++++..++..+.++ +.+||+....... +... .......|+
T Consensus 311 ~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~~-----~~~~~~~~s 380 (429)
T PRK01742 311 DRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSST-----FLDESPSIS 380 (429)
T ss_pred CCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecCC-----CCCCCceEC
Confidence 345666777664322222222 2222 3467888988887776654 6668886543221 1111 123457799
Q ss_pred CCCcEEEEEeCCCcEEEEEc--CCCceEEEecccccceeEEEEeCC
Q 016769 317 PDSKIAATAGWDRRVRIYNY--RKGSALAILKYHHATCNAVSFSSD 360 (383)
Q Consensus 317 p~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~v~~spd 360 (383)
||+++|+.++.++.+++|++ .+++....+..|...+...+|||-
T Consensus 381 PdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 381 PNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 99999999999999999887 357778888888888999999984
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.9e-11 Score=109.53 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=106.6
Q ss_pred CceEEEEEeCCCcEEEEeCCCCC------CceeeeeccccCeEEEEEeCCC-CceEEEEcCCcEEEEEccCCCCeeEEee
Q 016769 229 GFVNVLAGYEDGSILVWDIRNPG------IPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKK 301 (383)
Q Consensus 229 ~~~~~~sg~~dg~i~~wdl~~~~------~~~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~i~~wdl~~~~~~~~~~~ 301 (383)
+..+++.+++||.|++|.+...+ .+-..++.|.+.|..+.|+|-. +.+++++.|-+|++||+......+
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~---- 714 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS---- 714 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh----
Confidence 34468889999999999986543 2445678999999999998854 467889999999999998655433
Q ss_pred eeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceE-EEeccc-ccceeEEEEeCCCCEEEEEeCCC
Q 016769 302 EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL-AILKYH-HATCNAVSFSSDCKLMASASEDS 371 (383)
Q Consensus 302 ~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~h-~~~v~~v~~spd~~~las~s~d~ 371 (383)
.+..|...|.+++|+|||+.+|+.+.||+|++|+-++++.. +.=.+- ...-..|-|.-||++++..+.|.
T Consensus 715 ~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 715 RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred eeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 34567789999999999999999999999999999876542 111111 11234566888999988887775
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=110.83 Aligned_cols=149 Identities=20% Similarity=0.319 Sum_probs=109.5
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeee--e--ccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCC------------
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAM--K--VHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHST------------ 294 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~--~--~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~------------ 294 (383)
-+++|..-|.|.+.|..... ..+.+ . .....|+|+.|-+... .++.+-.+|.+.+||.+..-
T Consensus 187 dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~ 265 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKD 265 (636)
T ss_pred ceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCC
Confidence 47789999999999876421 11111 1 1235789999955444 45566678999999753110
Q ss_pred -CeeEEe-----------eeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCC
Q 016769 295 -GSCVIK-----------KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK 362 (383)
Q Consensus 295 -~~~~~~-----------~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~ 362 (383)
....+. ..+....+.|+.++|+|||++||+.+.||.+||||.++.+.+..++.+-+...||+||||||
T Consensus 266 ~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 266 GDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGK 345 (636)
T ss_pred CCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCcc
Confidence 000000 01112335688999999999999999999999999999998888888889999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCC
Q 016769 363 LMASASEDSTVALWELYPP 381 (383)
Q Consensus 363 ~las~s~d~~i~~w~~~~~ 381 (383)
++++|++|--|.||.+.+.
T Consensus 346 yIvtGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEER 364 (636)
T ss_pred EEEecCCcceEEEEEeccc
Confidence 9999999999999998653
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-11 Score=109.87 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=95.8
Q ss_pred EEEEEeCCCcEEEEeCCCC---------------------------CCceeeeeccccCeEEEEEeCCCCceEEEEcCCc
Q 016769 232 NVLAGYEDGSILVWDIRNP---------------------------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQK 284 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~---------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~ 284 (383)
.++.+..+|.+.++|..-. ..|+.....-..+|..++|++++..+++.+.||.
T Consensus 234 ~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf 313 (636)
T KOG2394|consen 234 LFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF 313 (636)
T ss_pred eEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCce
Confidence 4667888999999975310 0111112222346778889999999999999999
Q ss_pred EEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEe
Q 016769 285 IVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 358 (383)
Q Consensus 285 i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~s 358 (383)
+||+|++...-. ..++.--++..|++|+|||+||++|+.|.-|.||.+...+.+..=++|..+|..|+|.
T Consensus 314 LRvF~fdt~eLl----g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 314 LRIFDFDTQELL----GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEeeccHHHHH----HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999998754321 1222233678999999999999999999999999999999999889999999999997
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.2e-10 Score=109.58 Aligned_cols=147 Identities=17% Similarity=0.250 Sum_probs=96.4
Q ss_pred EEEEEeCCCcEEEEeCCCCCCc-eeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 232 NVLAGYEDGSILVWDIRNPGIP-LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
.++.+..-+.|..||+++.... ....+...+.|.++.+|+.+..++.|...|.+.+||++.....+.+... ....+
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P---~~~~i 1241 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP---ARAPI 1241 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc---ccCCc
Confidence 4667888999999999874321 1112222368999999999999999999999999999865433332211 12345
Q ss_pred EEEEECCC---CcEEEEEe--CCCcEEEEEcCCCceEEEeccc--------c-----------cceeEEEEeCCCCEEEE
Q 016769 311 SGTSIRPD---SKIAATAG--WDRRVRIYNYRKGSALAILKYH--------H-----------ATCNAVSFSSDCKLMAS 366 (383)
Q Consensus 311 ~~~~~~p~---~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~h--------~-----------~~v~~v~~spd~~~las 366 (383)
..+..+|- ....++++ ..+.|.+|++.+|....++..- . .......+.--+..+.+
T Consensus 1242 ~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt 1321 (1431)
T KOG1240|consen 1242 RHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT 1321 (1431)
T ss_pred ceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee
Confidence 55555543 34444444 5889999999988655444222 1 11122233223458899
Q ss_pred EeCCCcEEEEeCCCC
Q 016769 367 ASEDSTVALWELYPP 381 (383)
Q Consensus 367 ~s~d~~i~~w~~~~~ 381 (383)
|+.|+.|+.||..-|
T Consensus 1322 ggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1322 GGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cCCccceeeccCCCc
Confidence 999999999998655
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=97.12 Aligned_cols=141 Identities=21% Similarity=0.251 Sum_probs=103.1
Q ss_pred EEEeCCCcEEEEeCCCCCCceeeee-----ccccCeEEEEEeC--CCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecC
Q 016769 234 LAGYEDGSILVWDIRNPGIPLTAMK-----VHLEPVLCLSIDE--SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE 306 (383)
Q Consensus 234 ~sg~~dg~i~~wdl~~~~~~~~~~~-----~h~~~v~~~~~~~--~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~ 306 (383)
+++-.|..|.+|++.........+. .|.....+-.|+| ++..++ ...|+++..||++....... .-..|
T Consensus 138 lasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~s---I~dAH 213 (370)
T KOG1007|consen 138 LASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNS---IEDAH 213 (370)
T ss_pred eEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcEEEEEccchhhhcc---hhhhh
Confidence 3455699999999987544233222 2333444555655 444444 45789999999985432221 22345
Q ss_pred CCCeEEEEECCCCc-EEEEEeCCCcEEEEEcCC-CceEEEecccccceeEEEEeCCC-CEEEEEeCCCcEEEEeC
Q 016769 307 RPGISGTSIRPDSK-IAATAGWDRRVRIYNYRK-GSALAILKYHHATCNAVSFSSDC-KLMASASEDSTVALWEL 378 (383)
Q Consensus 307 ~~~i~~~~~~p~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~v~~spd~-~~las~s~d~~i~~w~~ 378 (383)
...+..+.|+|+-+ +|++++.||.|+|||.+. ..++..+.+|...|++|.|+|.- +++.|||.|..|.+|..
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 56789999999976 688999999999999975 45678889999999999999965 48889999999999975
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.6e-10 Score=105.28 Aligned_cols=188 Identities=16% Similarity=0.164 Sum_probs=114.9
Q ss_pred ccCCCCCceeeeccC-CcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcE
Q 016769 164 DVPAEGPKYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 242 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~-~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i 242 (383)
.++++|++++.++.. .+..|++||+++++............. ..+.|+. ...+++...+|.+
T Consensus 210 ~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~--------------~~wSPDG---~~La~~~~~~g~~ 272 (429)
T PRK01742 210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGA--------------PAFSPDG---SRLAFASSKDGVL 272 (429)
T ss_pred eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCc--------------eeECCCC---CEEEEEEecCCcE
Confidence 345677654443322 234799999988763211111000001 1244432 2223334568876
Q ss_pred EEE--eCCCCCCceeeeeccccCeEEEEEeCCCCceEEE-EcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC
Q 016769 243 LVW--DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 319 (383)
Q Consensus 243 ~~w--dl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~-~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 319 (383)
.|| |+... ....+..+...+....|++++..++.. ..++...+|+++........ .. .. . ....|+|||
T Consensus 273 ~Iy~~d~~~~--~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~---l~-~~-~-~~~~~SpDG 344 (429)
T PRK01742 273 NIYVMGANGG--TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL---VG-GR-G-YSAQISADG 344 (429)
T ss_pred EEEEEECCCC--CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE---ec-CC-C-CCccCCCCC
Confidence 666 55432 234455566667788999999876644 45788899988654432221 11 11 1 346799999
Q ss_pred cEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 320 KIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 320 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
++|+.++.++ +.+||+.+++.......+ ...+++|+|||++|++++.++.+++|.+.
T Consensus 345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 345 KTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 9998888765 556999888754322222 23567899999999999999999988764
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-11 Score=114.66 Aligned_cols=250 Identities=16% Similarity=0.213 Sum_probs=160.9
Q ss_pred CCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCC
Q 016769 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (383)
Q Consensus 7 ~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (383)
.....+.++||.+.|+.++.+.+...++++|.|..||||.+..+..+..+.+|. +.+.+++|+|. .+.+.||
T Consensus 221 t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrght--gavtaiafsP~------~sss~dg 292 (1113)
T KOG0644|consen 221 TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHT--GAVTAIAFSPR------ASSSDDG 292 (1113)
T ss_pred chhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccc--cceeeeccCcc------ccCCCCC
Confidence 344567889999999999999999999999999999999999988888887776 45899999993 3889999
Q ss_pred eEEEeecC-CCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 87 TVKCWDIE-NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 87 ti~~Wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
|+++||.. ... ...| .+... ..+.. +. +..+
T Consensus 293 t~~~wd~r~~~~-~y~p------------------rp~~~-------------~~~~~---------------~~-s~~~ 324 (1113)
T KOG0644|consen 293 TCRIWDARLEPR-IYVP------------------RPLKF-------------TEKDL---------------VD-SILF 324 (1113)
T ss_pred ceEecccccccc-ccCC------------------CCCCc-------------ccccc---------------ee-eeec
Confidence 99999985 110 0000 00000 00000 00 0000
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEE
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~w 245 (383)
-..+. -..+|+.+++.+.|.+.....- ...+.+ ..+.. .....++++-.+-.+++|
T Consensus 325 ~~~~~--~f~Tgs~d~ea~n~e~~~l~~~-----------------~~~lif--~t~ss---d~~~~~~~ar~~~~~~vw 380 (1113)
T KOG0644|consen 325 ENNGD--RFLTGSRDGEARNHEFEQLAWR-----------------SNLLIF--VTRSS---DLSSIVVTARNDHRLCVW 380 (1113)
T ss_pred ccccc--ccccccCCcccccchhhHhhhh-----------------ccceEE--Eeccc---cccccceeeeeeeEeeee
Confidence 01111 1234556666666654331110 000000 00000 000124556667788999
Q ss_pred eCCCCCCceeeeeccccCeEEEEEeCCCCce-EEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEE
Q 016769 246 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 324 (383)
Q Consensus 246 dl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s 324 (383)
++.. +...+.+.+|.+++..+.++|-.... ++++.||...|||+-.... ...+. .. .+.+..-.|++||..++.
T Consensus 381 nl~~-g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p--ik~y~-~g-h~kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 381 NLYT-GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP--IKHYF-IG-HGKLVDGKFSQDGTSIAL 455 (1113)
T ss_pred eccc-chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc--ceeee-cc-cceeeccccCCCCceEec
Confidence 9877 44467778899999999998876543 7899999999999975432 22222 11 345677789999999998
Q ss_pred EeCCCcEEEEEcCCCce
Q 016769 325 AGWDRRVRIYNYRKGSA 341 (383)
Q Consensus 325 ~~~dg~i~iwd~~~~~~ 341 (383)
...=|.++|+....++.
T Consensus 456 sd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 456 SDDHGQLYILGTGQSKS 472 (1113)
T ss_pred CCCCCceEEeccCCCcc
Confidence 88888999887755443
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6e-10 Score=97.47 Aligned_cols=143 Identities=17% Similarity=0.244 Sum_probs=111.1
Q ss_pred EEEEeCC--CcEEEEeCCCCCCceeeeec-cc------cC--eEEEEEeCC--CCceEEEEcCCcEEEEEccCCCCeeEE
Q 016769 233 VLAGYED--GSILVWDIRNPGIPLTAMKV-HL------EP--VLCLSIDES--CNGGISGGADQKIVLYNLDHSTGSCVI 299 (383)
Q Consensus 233 ~~sg~~d--g~i~~wdl~~~~~~~~~~~~-h~------~~--v~~~~~~~~--~~~~~s~~~d~~i~~wdl~~~~~~~~~ 299 (383)
+++|+.. ..+++||++.... +-..+. .+ -| +..+.|-+. ...++++..-+.+++||...+..+. .
T Consensus 164 va~GGke~~n~lkiwdle~~~q-iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV-~ 241 (412)
T KOG3881|consen 164 VATGGKENINELKIWDLEQSKQ-IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV-A 241 (412)
T ss_pred EecCchhcccceeeeeccccee-eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce-e
Confidence 4558888 8899999987522 111111 11 12 344556333 4568999999999999988544332 2
Q ss_pred eeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEE-ecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 300 KKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI-LKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 300 ~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
........++++...|++++|++|..-+.+..||++.++.+.. +++-.+.|.+|-.+|.+++||++|-|..|||+|+
T Consensus 242 --~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 242 --QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred --EeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 2344567899999999999999999999999999999998876 8889999999999999999999999999999998
Q ss_pred C
Q 016769 379 Y 379 (383)
Q Consensus 379 ~ 379 (383)
-
T Consensus 320 k 320 (412)
T KOG3881|consen 320 K 320 (412)
T ss_pred c
Confidence 4
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.7e-10 Score=103.31 Aligned_cols=232 Identities=17% Similarity=0.266 Sum_probs=152.2
Q ss_pred ceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCC
Q 016769 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (383)
Q Consensus 20 ~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~ 99 (383)
.|+.+||-|||+.|+-+ ++..+.++|+..+..+..++.|.. -+.+++++. +|.+++||+.|..|-+|+-.-...
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKD--tVycVAys~--dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKD--TVYCVAYAK--DGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccc--eEEEEEEcc--CCceeccCCCceeEEEecccccce-
Confidence 89999999999988764 455789999999999999888764 477888887 579999999999999998531100
Q ss_pred CCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCC
Q 016769 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQ 179 (383)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 179 (383)
+ +|
T Consensus 88 ------L----------------------------------------------------------------kY------- 90 (1081)
T KOG1538|consen 88 ------L----------------------------------------------------------------KY------- 90 (1081)
T ss_pred ------e----------------------------------------------------------------ee-------
Confidence 0 00
Q ss_pred cceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeec
Q 016769 180 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 259 (383)
Q Consensus 180 ~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~ 259 (383)
++.+.+.||.+ .|.+. .+++|+- ...-+|....... ... .
T Consensus 91 -----------------------------SH~D~IQCMsF---NP~~h----~LasCsL-sdFglWS~~qK~V--~K~-k 130 (1081)
T KOG1538|consen 91 -----------------------------SHNDAIQCMSF---NPITH----QLASCSL-SDFGLWSPEQKSV--SKH-K 130 (1081)
T ss_pred -----------------------------ccCCeeeEeec---CchHH----Hhhhcch-hhccccChhhhhH--Hhh-h
Confidence 00001111111 11100 1222221 1233454332110 000 0
Q ss_pred cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC-----cEEEEEeCCCcEEEE
Q 016769 260 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-----KIAATAGWDRRVRIY 334 (383)
Q Consensus 260 h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-----~~l~s~~~dg~i~iw 334 (383)
....+.+.+|..+|.+++.|-.+|+|.+-+-.... +..+ .......+.|.+++|+|.. ..++...|..++..+
T Consensus 131 ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe-k~~I-~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy 208 (1081)
T KOG1538|consen 131 SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE-KVKI-ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY 208 (1081)
T ss_pred hheeEEEeeecCCCcEEEEeccCceEEeecCCCCc-ceEE-eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence 12356788899999999999999999887643222 2222 1222344679999999864 368888999999888
Q ss_pred EcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 335 NYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 335 d~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
.+ +|+.+..-+.-.-...|+.+.|+|.++..|+.|+.+++|-
T Consensus 209 ~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 209 QL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred Ee-cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence 77 5666654444455678889999999999999999999873
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-09 Score=97.70 Aligned_cols=143 Identities=21% Similarity=0.294 Sum_probs=112.9
Q ss_pred ceEEEEEeCCCcEEEEeCCCCCCceeee-eccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC
Q 016769 230 FVNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 230 ~~~~~sg~~dg~i~~wdl~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
...++-|...|.|.+|+...+....... ..|.++|.++........+.+++.|..+..|+.......+. .+....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~----~~~~~~ 145 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI----WKEQKP 145 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee----eccCCC
Confidence 3456679999999999988754322222 46899999998877777789999999999998865433332 233345
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCC-----CC-EEEEEeCCCcEEEEeC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSD-----CK-LMASASEDSTVALWEL 378 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd-----~~-~las~s~d~~i~~w~~ 378 (383)
.+.+++++||++.+++| .+.|++||+++++.+.++.||..+|.+++|--+ |+ .|.++..+..|.+|-+
T Consensus 146 ~~~sl~is~D~~~l~~a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTA--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred ccceEEEcCCCCEEEec--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 68899999999999877 567999999999999999999999999999876 55 5666777888888865
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9e-11 Score=104.65 Aligned_cols=264 Identities=16% Similarity=0.202 Sum_probs=164.4
Q ss_pred eeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCC
Q 016769 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101 (383)
Q Consensus 22 ~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~ 101 (383)
+.+.|+.+|+.|+-|+.-|+|-..|..+.+....+.+-. .+..+.|-. ...++.......+.++|-+.-+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E---tv~Dv~~LH---neq~~AVAQK~y~yvYD~~GtE---- 202 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME---TVRDVTFLH---NEQFFAVAQKKYVYVYDNNGTE---- 202 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhh---hhhhhhhhc---chHHHHhhhhceEEEecCCCcE----
Confidence 458899999999999999999999998876554443221 222333332 3556777777888898854321
Q ss_pred CeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcc
Q 016769 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLS 181 (383)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 181 (383)
..+++.... +... .+-+ . .||+++++..|
T Consensus 203 -lHClk~~~~-----------------------v~rL-------------------------eFLP-y-HfLL~~~~~~G 231 (545)
T KOG1272|consen 203 -LHCLKRHIR-----------------------VARL-------------------------EFLP-Y-HFLLVAASEAG 231 (545)
T ss_pred -EeehhhcCc-----------------------hhhh-------------------------cccc-h-hheeeecccCC
Confidence 122211000 0000 0000 0 36777788889
Q ss_pred eEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccc
Q 016769 182 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 261 (383)
Q Consensus 182 ~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~ 261 (383)
-++.-|+.+++.+..+.- ..+...+|... |- ...+-.|...|+|-+|...+ ..|+..+-.|.
T Consensus 232 ~L~Y~DVS~GklVa~~~t----------~~G~~~vm~qN---P~----NaVih~GhsnGtVSlWSP~s-kePLvKiLcH~ 293 (545)
T KOG1272|consen 232 FLKYQDVSTGKLVASIRT----------GAGRTDVMKQN---PY----NAVIHLGHSNGTVSLWSPNS-KEPLVKILCHR 293 (545)
T ss_pred ceEEEeechhhhhHHHHc----------cCCccchhhcC---Cc----cceEEEcCCCceEEecCCCC-cchHHHHHhcC
Confidence 999999999987665531 11222222221 11 12345799999999999876 56777788899
Q ss_pred cCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEE-cCC--
Q 016769 262 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN-YRK-- 338 (383)
Q Consensus 262 ~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd-~~~-- 338 (383)
.+|.++++++.|.+.++.|.|..++||||+........ .. ......++||.-| .|| .++...+.||- ...
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~----~t-p~~a~~ls~Sqkg-lLA-~~~G~~v~iw~d~~~~s 366 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY----RT-PHPASNLSLSQKG-LLA-LSYGDHVQIWKDALKGS 366 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeecccccccee----ec-CCCcccccccccc-cee-eecCCeeeeehhhhcCC
Confidence 99999999999999999999999999999754311111 11 1345667777444 444 45666799994 332
Q ss_pred CceEEEeccc--ccceeEEEEeCCCCEEEEEeCCC
Q 016769 339 GSALAILKYH--HATCNAVSFSSDCKLMASASEDS 371 (383)
Q Consensus 339 ~~~~~~~~~h--~~~v~~v~~spd~~~las~s~d~ 371 (383)
+.....+-.| ...|..+.|.|-...|-.|-..|
T Consensus 367 ~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 367 GHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred CCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 1222223233 24788889988544444443333
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.3e-11 Score=106.91 Aligned_cols=126 Identities=16% Similarity=0.265 Sum_probs=103.5
Q ss_pred eeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC--CCcEEEEEeCCCcEE
Q 016769 255 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP--DSKIAATAGWDRRVR 332 (383)
Q Consensus 255 ~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p--~~~~l~s~~~dg~i~ 332 (383)
..+++|++.|+|+.|..+|..|++|+.|.++.|||.-.... +...-..|...|.++.|-| +.+.+++|..|+.|+
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl---lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL---LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcce---eeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 35789999999999999999999999999999998753221 1112345667799999977 457899999999999
Q ss_pred EEEcCCC----------ceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCCCCCC
Q 016769 333 IYNYRKG----------SALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYPPHA 383 (383)
Q Consensus 333 iwd~~~~----------~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~~~~~ 383 (383)
+||+.+. .+...+..|...|..++-.|++. .+-++|+||+|+=+|+..||.
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 9999752 33456778999999999999994 788999999999999998873
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-09 Score=92.66 Aligned_cols=149 Identities=17% Similarity=0.241 Sum_probs=117.9
Q ss_pred EEEEEeCCCcEEEEeCCCCCC--ceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee-eecCCC
Q 016769 232 NVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE-INLERP 308 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~-~~~~~~ 308 (383)
++++|+.|..-.+|...+++. +...+..++....++.|+|..+.+++|+....|.+|.++..+. .-..++ .+...+
T Consensus 69 rIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd-WWVsKhikkPirS 147 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND-WWVSKHIKKPIRS 147 (361)
T ss_pred ceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc-eehhhhhCCcccc
Confidence 589999999999998855442 4456677899999999999999999999999999998875432 211222 233456
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEc-----CC-------------CceEEEecccccceeEEEEeCCCCEEEEEeCC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNY-----RK-------------GSALAILKYHHATCNAVSFSSDCKLMASASED 370 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~-----~~-------------~~~~~~~~~h~~~v~~v~~spd~~~las~s~d 370 (383)
.|.+++++|++-.+++|+.|++.|+|.. +. |..+..+....+.+..+.|+|+|..||-.+.|
T Consensus 148 tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd 227 (361)
T KOG1523|consen 148 TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD 227 (361)
T ss_pred ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC
Confidence 7999999999999999999999999965 11 22233444566789999999999999999999
Q ss_pred CcEEEEeCCCC
Q 016769 371 STVALWELYPP 381 (383)
Q Consensus 371 ~~i~~w~~~~~ 381 (383)
.+|.+=|..-|
T Consensus 228 s~v~~~da~~p 238 (361)
T KOG1523|consen 228 STVSFVDAAGP 238 (361)
T ss_pred CceEEeecCCC
Confidence 99999887644
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-09 Score=105.48 Aligned_cols=180 Identities=16% Similarity=0.204 Sum_probs=134.5
Q ss_pred CcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeee
Q 016769 179 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 258 (383)
Q Consensus 179 ~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~ 258 (383)
.++.+-+||......+..++.+.. ....++....+.+ ...++.+|+.-+.|.+|+......+. .+.
T Consensus 107 ~~ns~~i~d~~~~~~~~~i~~~er---------~~l~~~~~~g~s~----~~~~i~~gsv~~~iivW~~~~dn~p~-~l~ 172 (967)
T KOG0974|consen 107 SRNSLLIRDSKNSSVLSKIQSDER---------CTLYSSLIIGDSA----EELYIASGSVFGEIIVWKPHEDNKPI-RLK 172 (967)
T ss_pred cCceEEEEecccCceehhcCCCce---------EEEEeEEEEeccC----cEEEEEeccccccEEEEeccccCCcc-eec
Confidence 356899999877665555543211 0111122212222 23467889999999999987444443 478
Q ss_pred ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCC
Q 016769 259 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 338 (383)
Q Consensus 259 ~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~ 338 (383)
+|.+.+..+.++.++.++++.+.|.++++|++++..... ...-.|..++..+.|.|+ .+++++.|-+.++|+.+
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~- 246 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN- 246 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccc--eeEEeccceEEEEEecc-
Confidence 999999999999999999999999999999998654221 122346678999999998 89999999999999764
Q ss_pred CceEEEeccccc-ceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 339 GSALAILKYHHA-TCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 339 ~~~~~~~~~h~~-~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
++.+..+..|.. -++.++..++...++|++.|+.+++|++
T Consensus 247 ~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 247 GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 555667888875 4899999888889999999999999987
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.1e-10 Score=100.69 Aligned_cols=140 Identities=15% Similarity=0.243 Sum_probs=110.6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
.++.++.||.+.+-+- + +..-..+..|..++.+-.|+++|..+++.|.||.|++|.-. .+++..+-.....|.
T Consensus 77 ~~~i~s~DGkf~il~k-~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-----GMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNK-S-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-----GMLRSTVVQNEESIR 149 (737)
T ss_pred eEEEEcCCceEEEecc-c-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-----chHHHHHhhcCceeE
Confidence 4677899999888762 2 33334567899999999999999999999999999999632 233333333445799
Q ss_pred EEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 312 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
|+++.|+.+.++ -+..+-+.|=-+.-...+..+++|.+-|.++.|+|...+++||++|..-++||-+
T Consensus 150 c~~W~p~S~~vl-~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 150 CARWAPNSNSIV-FCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred EEEECCCCCceE-EecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 999999987544 3456667776776666677899999999999999999999999999999999964
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-07 Score=86.49 Aligned_cols=280 Identities=18% Similarity=0.151 Sum_probs=148.7
Q ss_pred EEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCcee
Q 016769 33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH 112 (383)
Q Consensus 33 L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~ 112 (383)
+++-..++.|.|.|..+.+.+..+..... ....+.+++ +++++..++.|+.|.++|+.+.+... .++.+..
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~--~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~----~i~~G~~- 79 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGA--PHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVA----TIKVGGN- 79 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STT--EEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEE----EEE-SSE-
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCC--ceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEE----EEecCCC-
Confidence 45677889999999988776665543222 133455676 46788888899999999998764211 1111000
Q ss_pred eeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCC
Q 016769 113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 192 (383)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~ 192 (383)
....+++++| ++++++....+.+.++|.++.+
T Consensus 80 -----------------------------------------------~~~i~~s~DG-~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 80 -----------------------------------------------PRGIAVSPDG-KYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp -----------------------------------------------EEEEEE--TT-TEEEEEEEETTEEEEEETTT--
T ss_pred -----------------------------------------------cceEEEcCCC-CEEEEEecCCCceeEecccccc
Confidence 0011233455 4677776677899999999998
Q ss_pred eeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCC
Q 016769 193 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES 272 (383)
Q Consensus 193 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~ 272 (383)
.+..+.-....... ...+. .++.. .+. ...++++--+-+.|.+-|.............-........++++
T Consensus 112 ~v~~I~~~~~~~~~---~~~Rv--~aIv~-s~~---~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 112 PVKTIPTGGMPVDG---PESRV--AAIVA-SPG---RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp EEEEEE--EE-TTT---S---E--EEEEE--SS---SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TT
T ss_pred ceeecccccccccc---cCCCc--eeEEe-cCC---CCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcc
Confidence 88776532211100 11111 12211 111 11234444445777777876643322222112334556788999
Q ss_pred CCceEEE-EcCCcEEEEEccCCCCeeEEe---------------------------------------------------
Q 016769 273 CNGGISG-GADQKIVLYNLDHSTGSCVIK--------------------------------------------------- 300 (383)
Q Consensus 273 ~~~~~s~-~~d~~i~~wdl~~~~~~~~~~--------------------------------------------------- 300 (383)
+++++.+ ..++.|.++|.........+.
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv 262 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV 262 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE
T ss_pred cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEE
Confidence 9887664 345667777765332111000
Q ss_pred eeeecCCCCeEEEEECCCCcEEEEE----eCCCcEEEEEcCCCceEEEecccc-cceeEEEEeCCCCEE-EEEeCCC-cE
Q 016769 301 KEINLERPGISGTSIRPDSKIAATA----GWDRRVRIYNYRKGSALAILKYHH-ATCNAVSFSSDCKLM-ASASEDS-TV 373 (383)
Q Consensus 301 ~~~~~~~~~i~~~~~~p~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~spd~~~l-as~s~d~-~i 373 (383)
+.++....+ --+..||+++++... ...++|.++|.++.+...++.... ..+..+.|++||+.+ +|.-.++ .|
T Consensus 263 ~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 263 KTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp EEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred EEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEE
Confidence 001111111 234568999999887 456899999999998877775322 358899999999943 3433333 79
Q ss_pred EEEeCC
Q 016769 374 ALWELY 379 (383)
Q Consensus 374 ~~w~~~ 379 (383)
.+||..
T Consensus 342 ~v~D~~ 347 (369)
T PF02239_consen 342 VVYDAK 347 (369)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999874
|
... |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-09 Score=95.59 Aligned_cols=129 Identities=21% Similarity=0.254 Sum_probs=94.5
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 312 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~ 312 (383)
+++.++||.|++|. ++ +-...++....++|.|+.|+|+...++-+ ..+.+.+=.|..... . -..+.|.+-|-+
T Consensus 119 Llt~GEDG~iKiWS-rs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k-~---i~WkAHDGiiL~ 191 (737)
T KOG1524|consen 119 LLTAGEDGVIKIWS-RS-GMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSK-I---IRWRAHDGLVLS 191 (737)
T ss_pred eeeecCCceEEEEe-cc-chHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccc-e---eEEeccCcEEEE
Confidence 77889999999997 33 22223344456799999999987765544 445565555543221 1 134567788999
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED 370 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d 370 (383)
+.++|....+++|+.|-+.++||.. |..+.+-..|+-+|.+|+|+|| +.++.+|.+
T Consensus 192 ~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 192 LSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred eecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee
Confidence 9999999999999999999999984 6666666778888888888888 666666654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-08 Score=92.41 Aligned_cols=311 Identities=14% Similarity=0.130 Sum_probs=149.8
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEe-cccCCe
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRDGT 87 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~D~t 87 (383)
+.+.++......-..++|+|||++++..+.||.|.++|+.+.+.+..+.... ....+++++ ++++++. ...+++
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~--DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSP--DGKYVYVANYEPGT 101 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE----TTTEEEEEEEETTE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcC--CCCEEEEEecCCCc
Confidence 4556666544444557899999999999999999999999888776654432 345667776 4677765 458899
Q ss_pred EEEeecCCCCCCCCCeeeeecCceee-----eeEEeeccccc--cccccCCCCccceeccCcccccCccccccccCCccc
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHF-----CKLSLVKEPYA--NAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFE 160 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
+.++|.++.+.. ..+....... ....+...+.. ..........++....... . .......+ ...+.
T Consensus 102 v~v~D~~tle~v----~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-~-~~~~~~i~-~g~~~ 174 (369)
T PF02239_consen 102 VSVIDAETLEPV----KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-K-NLKVTTIK-VGRFP 174 (369)
T ss_dssp EEEEETTT--EE----EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-S-CEEEEEEE---TTE
T ss_pred eeEeccccccce----eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-c-ccceeeec-ccccc
Confidence 999998876432 2222211100 00011111110 0000000111111110000 0 00000000 00000
Q ss_pred eecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEe----ecCCCCCCceEEEEE
Q 016769 161 IIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA----YLPSKSQGFVNVLAG 236 (383)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~sg 236 (383)
.-..+.+++ +|++++....+.+-++|+++++.+..+.-... .+.+++..+.... +....... ..++.
T Consensus 175 ~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~------p~~~~~~~~php~~g~vw~~~~~~~--~~~~~ 245 (369)
T PF02239_consen 175 HDGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVALIDTGKK------PHPGPGANFPHPGFGPVWATSGLGY--FAIPL 245 (369)
T ss_dssp EEEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSS------BEETTEEEEEETTTEEEEEEEBSSS--SEEEE
T ss_pred cccccCccc-ceeeecccccceeEEEeeccceEEEEeecccc------ccccccccccCCCcceEEeeccccc--eeccc
Confidence 001133444 56666656667999999999887655532110 0111111111000 00000011 12222
Q ss_pred eCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEE----EcCCcEEEEEccCCCCeeEEeeeee-cCCCCeE
Q 016769 237 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG----GADQKIVLYNLDHSTGSCVIKKEIN-LERPGIS 311 (383)
Q Consensus 237 ~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~----~~d~~i~~wdl~~~~~~~~~~~~~~-~~~~~i~ 311 (383)
-....+.+||..+.. .+..++....+ ..+..+|++..+... ...+.|.++|.++.. ....+. .....+.
T Consensus 246 ig~~~v~v~d~~~wk-vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~----~~~~i~~~~~~~~~ 319 (369)
T PF02239_consen 246 IGTDPVSVHDDYAWK-VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK----VVKTITPGPGKRVV 319 (369)
T ss_dssp EE--TTT-STTTBTS-EEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE----EEE-HHHHHT--EE
T ss_pred ccCCccccchhhcCe-EEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc----eeEEEeccCCCcEe
Confidence 223456678876633 45666655555 777789999988776 345789999987542 111221 1122488
Q ss_pred EEEECCCCcEEEEEeCCCc--EEEEEcCCCceEEEec
Q 016769 312 GTSIRPDSKIAATAGWDRR--VRIYNYRKGSALAILK 346 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~ 346 (383)
.+.|+++|+++..+.+++. |.+||..+.+....+.
T Consensus 320 h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 320 HMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 8999999998777666555 9999999999888775
|
... |
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-09 Score=92.56 Aligned_cols=150 Identities=14% Similarity=0.158 Sum_probs=116.2
Q ss_pred eEEEEEeCCCcEEEEeCCC-----CCCceeeeec-cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee
Q 016769 231 VNVLAGYEDGSILVWDIRN-----PGIPLTAMKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN 304 (383)
Q Consensus 231 ~~~~sg~~dg~i~~wdl~~-----~~~~~~~~~~-h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~ 304 (383)
.++++|+.|..+++|.+.. -..|+..+.. |...|.|+.|+.....+++|+.++++.+-|++..+... .....
T Consensus 69 ~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~--V~~~~ 146 (609)
T KOG4227|consen 69 RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY--VANEN 146 (609)
T ss_pred eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeee--eeccc
Confidence 4789999999999999742 1134444433 45789999999888889999999999999998654222 22223
Q ss_pred cCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCc-e--EEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCCC
Q 016769 305 LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS-A--LAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYP 380 (383)
Q Consensus 305 ~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~-~--~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~~ 380 (383)
-..+.|..+..+|..+.+++.+.+|.|.+||.+... . +..+......-.++.|+|... +|++.+.-+-+-+||...
T Consensus 147 ~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 147 NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence 334579999999999999999999999999997643 2 234445666778899999876 889999999999999987
Q ss_pred CC
Q 016769 381 PH 382 (383)
Q Consensus 381 ~~ 382 (383)
|.
T Consensus 227 ~~ 228 (609)
T KOG4227|consen 227 QA 228 (609)
T ss_pred cc
Confidence 74
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-08 Score=88.65 Aligned_cols=177 Identities=17% Similarity=0.212 Sum_probs=114.8
Q ss_pred eccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC---
Q 016769 175 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG--- 251 (383)
Q Consensus 175 ~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~--- 251 (383)
+++..|..||++|-.. +....++.. ....+-|++-. |.. ...++.|.. +-|.+|......
T Consensus 114 ava~nddvVriy~kss-t~pt~Lks~---------sQrnvtclawR---Pls---aselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 114 AVATNDDVVRIYDKSS-TCPTKLKSV---------SQRNVTCLAWR---PLS---ASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred hhhccCcEEEEeccCC-CCCceecch---------hhcceeEEEec---cCC---cceeeeeec-ceeEEEEcCcccccc
Confidence 3445567999999766 444444421 12234455433 321 224666664 459999754221
Q ss_pred Cc--------eeee--eccccCeEEEEEeCCCCceEEEEc-CCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCc
Q 016769 252 IP--------LTAM--KVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK 320 (383)
Q Consensus 252 ~~--------~~~~--~~h~~~v~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 320 (383)
.+ ...+ ++| .+|.+|.+.+++..+++++. |..|.|||.+..++..+. ....++++-+.|+||+.
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~----~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI----PKGLGGFSLLKWSPDGD 251 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc----ccCCCceeeEEEcCCCC
Confidence 11 1112 234 68999999999998888886 566999999876654432 12346788999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcE
Q 016769 321 IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTV 373 (383)
Q Consensus 321 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i 373 (383)
++.+++-|+..++|+......-..+.--.+.|....|+|+|+ +|.+.+..-.+
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL 305 (445)
T ss_pred EEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceE
Confidence 999999999999996654332222322344899999999999 45556654433
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-08 Score=90.66 Aligned_cols=173 Identities=17% Similarity=0.246 Sum_probs=116.6
Q ss_pred eEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeee---
Q 016769 182 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK--- 258 (383)
Q Consensus 182 ~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~--- 258 (383)
.|.-.+|+.+.-+..+.-.. +...++.+. +. ...++.|+.||.|.+||.+.... ...+.
T Consensus 156 evYRlNLEqGrfL~P~~~~~----------~~lN~v~in---~~----hgLla~Gt~~g~VEfwDpR~ksr-v~~l~~~~ 217 (703)
T KOG2321|consen 156 EVYRLNLEQGRFLNPFETDS----------GELNVVSIN---EE----HGLLACGTEDGVVEFWDPRDKSR-VGTLDAAS 217 (703)
T ss_pred ceEEEEcccccccccccccc----------ccceeeeec---Cc----cceEEecccCceEEEecchhhhh-heeeeccc
Confidence 57777888877655443211 112222221 11 12466788899999999987432 22221
Q ss_pred ---ccc-----cCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCC--CcEEEEEeCC
Q 016769 259 ---VHL-----EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD--SKIAATAGWD 328 (383)
Q Consensus 259 ---~h~-----~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~--~~~l~s~~~d 328 (383)
.|. -.|.++.|..++..++.|...|.+.||||.... .++.+.... .-.|..+.|.+. .+.+++ ...
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--pl~~kdh~~-e~pi~~l~~~~~~~q~~v~S-~Dk 293 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--PLLVKDHGY-ELPIKKLDWQDTDQQNKVVS-MDK 293 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC--ceeecccCC-ccceeeecccccCCCceEEe-cch
Confidence 122 248999998888888999999999999998654 333333222 235777777654 344554 456
Q ss_pred CcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 329 RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 329 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
..++|||-.+|+.+..+.. ...++.+++-|++-++.+|-++..+..|=
T Consensus 294 ~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 294 RILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred HHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEE
Confidence 7899999999999887753 34599999999999999999998877663
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-08 Score=86.88 Aligned_cols=99 Identities=19% Similarity=0.353 Sum_probs=72.2
Q ss_pred EeCCCcEEEEeCCCCC-CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEE
Q 016769 236 GYEDGSILVWDIRNPG-IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 314 (383)
Q Consensus 236 g~~dg~i~~wdl~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~ 314 (383)
|-..|.|..-.+.... .++..+++|..++.++.+++....+++|..|..+..||+....+.. .++..+...+..+.
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~---~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA---YELQGHNDKVQALS 247 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee---eeeccchhhhhhhh
Confidence 4444555444433222 3467788999999999999998899999999999999997654432 23334445566666
Q ss_pred ECCCCcEEEEEeCCCcEEEEEcC
Q 016769 315 IRPDSKIAATAGWDRRVRIYNYR 337 (383)
Q Consensus 315 ~~p~~~~l~s~~~dg~i~iwd~~ 337 (383)
.-+--+.+.+++.||.|.+||++
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhheeeeeccCCCeEEEEecc
Confidence 65666789999999999999985
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-10 Score=68.28 Aligned_cols=38 Identities=29% Similarity=0.711 Sum_probs=36.1
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEee
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~ 46 (383)
+++.+|++|.+.|++|+|+|++.+|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 36789999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-09 Score=95.08 Aligned_cols=144 Identities=19% Similarity=0.217 Sum_probs=102.8
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
.+.+|+.||++|+|+.-+- .++..+..|...|.++.|+++++.+++-+.| ..++|+.+.. .+...+..........
T Consensus 158 ~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g--~~~a~~t~~~k~~~~~ 233 (398)
T KOG0771|consen 158 KLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG--AALARKTPFSKDEMFS 233 (398)
T ss_pred EeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC--chhhhcCCcccchhhh
Confidence 5888999999999995432 2344556788899999999999999999999 8999998754 3333333222234466
Q ss_pred EEEECCCC-----cEEEEEeCCCcEEEEEcCCCc---eE--EEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 312 GTSIRPDS-----KIAATAGWDRRVRIYNYRKGS---AL--AILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 312 ~~~~~p~~-----~~l~s~~~dg~i~iwd~~~~~---~~--~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.+.|+.|+ ..++....-+.|+.||+...+ .+ ...-.-.+.|.+++.|+||+++|-|+.||.|-+++..
T Consensus 234 ~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~ 311 (398)
T KOG0771|consen 234 SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAK 311 (398)
T ss_pred hceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEec
Confidence 77788777 344444556677777773211 11 1111223469999999999999999999999999874
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.5e-09 Score=89.35 Aligned_cols=146 Identities=12% Similarity=0.150 Sum_probs=114.0
Q ss_pred EEEEEeCCCcEEEEeCCCCC--CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEcc-CCCCeeEEeeeeecCCC
Q 016769 232 NVLAGYEDGSILVWDIRNPG--IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD-HSTGSCVIKKEINLERP 308 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~-~~~~~~~~~~~~~~~~~ 308 (383)
.++.+-+...|.||...... .+.++++.|...|..+.+.+..+.+++|+.|..-.+|... ..+-+. ...+.....
T Consensus 24 ~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkp--tlvLlRiNr 101 (361)
T KOG1523|consen 24 QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKP--TLVLLRINR 101 (361)
T ss_pred eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecc--ceeEEEecc
Confidence 35667778899999876543 3567889999999999999999999999999999999873 222111 112333345
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEE----EecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA----ILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
..+++.++|..+.||+|+.-+.|.+|-.+.-+-=. .-+.++..|.+++|+|++-+||.||-|+..++|..|
T Consensus 102 AAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 102 AATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred ceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEe
Confidence 68899999999999999999999999886533211 112467789999999999999999999999999765
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.3e-08 Score=85.44 Aligned_cols=71 Identities=11% Similarity=0.214 Sum_probs=56.0
Q ss_pred CCeEEEEECCCCcEEEEEeCCCcEEEEEc-CCCceEEEeccccc------------c---eeEEEEeCCCCEEEEEeCCC
Q 016769 308 PGISGTSIRPDSKIAATAGWDRRVRIYNY-RKGSALAILKYHHA------------T---CNAVSFSSDCKLMASASEDS 371 (383)
Q Consensus 308 ~~i~~~~~~p~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~h~~------------~---v~~v~~spd~~~las~s~d~ 371 (383)
.+|+.+.|+++|+|+++=.. -+|++||+ ...+++.+++-|.. . -..++||.++.+++|||..+
T Consensus 273 sSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n 351 (433)
T KOG1354|consen 273 SSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN 351 (433)
T ss_pred hhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccc
Confidence 45788999999999986432 68999999 56677777765532 1 25567999999999999999
Q ss_pred cEEEEeCC
Q 016769 372 TVALWELY 379 (383)
Q Consensus 372 ~i~~w~~~ 379 (383)
..+++++.
T Consensus 352 ~frvf~~~ 359 (433)
T KOG1354|consen 352 VFRVFNLA 359 (433)
T ss_pred eEEEecCC
Confidence 99999864
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-10 Score=100.61 Aligned_cols=181 Identities=14% Similarity=0.154 Sum_probs=131.9
Q ss_pred eeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC
Q 016769 172 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~ 251 (383)
.++. |+..|.+-..|..+++..+.+.-...+.++.+-+.. .+++..+.+.+.|||= . +
T Consensus 143 hlll-gGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHne-------------------q~~AVAQK~y~yvYD~-~-G 200 (545)
T KOG1272|consen 143 HLLL-GGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNE-------------------QFFAVAQKKYVYVYDN-N-G 200 (545)
T ss_pred EEEe-cCCccceeeeecccceeeeeeehhhhhhhhhhhcch-------------------HHHHhhhhceEEEecC-C-C
Confidence 4444 455789999999998876665433333222221111 1344556788899983 3 3
Q ss_pred CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcE
Q 016769 252 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 331 (383)
Q Consensus 252 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i 331 (383)
.-++.++.| ..|..+.|-|.-..|++++..|.++--|+..... ...+....+.+..+.-+|-+..+-.|...|+|
T Consensus 201 tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl----Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtV 275 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL----VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTV 275 (545)
T ss_pred cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhh----hHHHHccCCccchhhcCCccceEEEcCCCceE
Confidence 445666655 3677788877666667788888888778754321 12233344567778888998899999999999
Q ss_pred EEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 332 RIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 332 ~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.+|.....+++..+..|..+|.+|++.|+|+++||++.|..++|||+.
T Consensus 276 SlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred EecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeec
Confidence 999999999888888999999999999999999999999999999985
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-07 Score=87.88 Aligned_cols=111 Identities=13% Similarity=0.069 Sum_probs=69.3
Q ss_pred CcEEEE--eCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcC---CcEEEEEccCCCCeeEEeeeeecCCCCeEEEE
Q 016769 240 GSILVW--DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTGSCVIKKEINLERPGISGTS 314 (383)
Q Consensus 240 g~i~~w--dl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d---~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~ 314 (383)
+...|| |+.... ...+..+...+....+++++..++..+.+ ..|.+||++..... .+. .........
T Consensus 309 g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt-----~~~~~~~p~ 380 (429)
T PRK03629 309 GRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT-----DTFLDETPS 380 (429)
T ss_pred CCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC-----CCCCCCCce
Confidence 344444 554422 22333333345567889998887665443 34778888654321 111 111234567
Q ss_pred ECCCCcEEEEEeCCCc---EEEEEcCCCceEEEecccccceeEEEEeC
Q 016769 315 IRPDSKIAATAGWDRR---VRIYNYRKGSALAILKYHHATCNAVSFSS 359 (383)
Q Consensus 315 ~~p~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~h~~~v~~v~~sp 359 (383)
|+|||++|+.++.++. +.++++ +++....+.+|...+...+|+|
T Consensus 381 ~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 381 IAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 9999999999998875 566677 4555666777888888899998
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-07 Score=88.47 Aligned_cols=191 Identities=13% Similarity=0.105 Sum_probs=109.6
Q ss_pred ccCCCCCceeeecc-CCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC--
Q 016769 164 DVPAEGPKYMAVAG-EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-- 240 (383)
Q Consensus 164 ~~~~~~~~~~~~~g-~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg-- 240 (383)
.++++|+++..++. .....+.+||+.+++.............+ .+.|+. ...+++...+|
T Consensus 205 ~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~--------------~~SPDG---~~La~~~~~~g~~ 267 (429)
T PRK03629 205 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAP--------------AFSPDG---SKLAFALSKTGSL 267 (429)
T ss_pred EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCe--------------EECCCC---CEEEEEEcCCCCc
Confidence 45577765544432 22357999999887632211111111111 244432 22233333344
Q ss_pred cEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEc-CCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC
Q 016769 241 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 319 (383)
Q Consensus 241 ~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 319 (383)
.|.+||+.+.. ...+..+...+....|+|++..++..+. ++...+|.++..++... .+...........|+|||
T Consensus 268 ~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~---~lt~~~~~~~~~~~SpDG 342 (429)
T PRK03629 268 NLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ---RITWEGSQNQDADVSSDG 342 (429)
T ss_pred EEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE---EeecCCCCccCEEECCCC
Confidence 58889987643 2334434445677889999988766554 45556665443332211 112222345568899999
Q ss_pred cEEEEEeCC---CcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCc---EEEEeC
Q 016769 320 KIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDST---VALWEL 378 (383)
Q Consensus 320 ~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~---i~~w~~ 378 (383)
++|+..+.+ ..|.+||+.+++.. .+... .......|+|||++|+.++.|+. +.++++
T Consensus 343 ~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 343 KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 998876654 35888999887643 33221 12345689999999999998875 555665
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-07 Score=88.90 Aligned_cols=186 Identities=16% Similarity=0.158 Sum_probs=107.2
Q ss_pred ccCCCCCceeeeccC-CcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcE
Q 016769 164 DVPAEGPKYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 242 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~-~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i 242 (383)
.++++|++++.++.. ....|.+||+.+++............. ..+.|+. ...+++.+.++..
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~--------------~~~SPDG---~~la~~~~~~g~~ 264 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSA--------------PAWSPDG---RTLAVALSRDGNS 264 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccc--------------eEECCCC---CEEEEEEccCCCc
Confidence 345677654443322 224699999988764321111100001 1244432 2233456778887
Q ss_pred EEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcE
Q 016769 243 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 321 (383)
Q Consensus 243 ~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 321 (383)
.||.+.........+..+........|++++..++..+ .++...+|.++..++.... +..........+|+|||++
T Consensus 265 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~---lt~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 265 QIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR---VTFTGSYNTSPRISPDGKL 341 (427)
T ss_pred eEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE---EecCCCCcCceEECCCCCE
Confidence 77765322222344444444455678999998776544 4567778876543332211 1112222345789999999
Q ss_pred EEEEeCCC---cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCC
Q 016769 322 AATAGWDR---RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS 371 (383)
Q Consensus 322 l~s~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~ 371 (383)
|+..+.++ .|.+||+.+++... +... .......|+|||++|+.++.++
T Consensus 342 Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 342 LAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred EEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecC
Confidence 98777654 69999998876543 3222 2345678999999888777655
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.9e-09 Score=63.49 Aligned_cols=38 Identities=26% Similarity=0.607 Sum_probs=36.0
Q ss_pred ceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 340 SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 340 ~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
+++.++.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-08 Score=96.47 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=104.3
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccc----cCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHL----EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
++....+..+.+||..... ....++... .+..-+.+++..-+.++|+.-+.|.+|+........ ....|.+
T Consensus 102 i~l~~~~ns~~i~d~~~~~-~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~----~l~GHeG 176 (967)
T KOG0974|consen 102 IALVTSRNSLLIRDSKNSS-VLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI----RLKGHEG 176 (967)
T ss_pred EEEEEcCceEEEEecccCc-eehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc----eecccCC
Confidence 5556667889999976532 222222111 112222234444466888889999999987333222 2456888
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEE-EecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA-ILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
.|..+.++.||+++++.|.|+++|+|++++.+... +.-+|...|+.+.|+|. .++|++.|.+.++|+.
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 99999999999999999999999999999988876 55689999999999987 8999999999999964
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.8e-07 Score=84.93 Aligned_cols=190 Identities=21% Similarity=0.218 Sum_probs=106.2
Q ss_pred cCCCCCceeeeccC-CcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC--c
Q 016769 165 VPAEGPKYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--S 241 (383)
Q Consensus 165 ~~~~~~~~~~~~g~-~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg--~ 241 (383)
+++++..++.++-. ....|.+||+.+++.............+ .+.|+ +...+++.+.+| .
T Consensus 211 wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~--------------~~SpD---G~~l~~~~s~~g~~~ 273 (433)
T PRK04922 211 WSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAP--------------SFSPD---GRRLALTLSRDGNPE 273 (433)
T ss_pred CCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCc--------------eECCC---CCEEEEEEeCCCCce
Confidence 45666644443321 2346999999887642211111111111 23332 222233444444 5
Q ss_pred EEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCc
Q 016769 242 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK 320 (383)
Q Consensus 242 i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 320 (383)
|.+||+.++. ...+..+........|++++..++..+ .++...+|.++..++... .+..........+|+|||+
T Consensus 274 Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~---~lt~~g~~~~~~~~SpDG~ 348 (433)
T PRK04922 274 IYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE---RLTFQGNYNARASVSPDGK 348 (433)
T ss_pred EEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE---EeecCCCCccCEEECCCCC
Confidence 9999987643 334444544456688999998776655 455544444332222211 1112222344689999999
Q ss_pred EEEEEeCCC---cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCC---CcEEEEeC
Q 016769 321 IAATAGWDR---RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED---STVALWEL 378 (383)
Q Consensus 321 ~l~s~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d---~~i~~w~~ 378 (383)
+|+..+.++ .|.+||+.+++.. .+. +........|+|||++++..+.+ ..+.++++
T Consensus 349 ~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 349 KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 988766443 6999999877654 332 22234567899999988776654 24555555
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.1e-05 Score=68.54 Aligned_cols=203 Identities=15% Similarity=0.232 Sum_probs=114.5
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEecc---C-cCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQ---N-SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~---~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
++++++.-..+.+.++++...-.+....+ . .....+.........++ .+.|++ ...+++.-....|.+|+
T Consensus 99 ~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v---~~~pdg---~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 99 RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV---VFSPDG---RFVYVPDLGADRVYVYD 172 (345)
T ss_dssp SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE---EE-TTS---SEEEEEETTTTEEEEEE
T ss_pred CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE---EECCCC---CEEEEEecCCCEEEEEE
Confidence 45666655578899999977433222211 0 00000000011111222 244432 22344454556899999
Q ss_pred CCCCCCcee---eeecc-ccCeEEEEEeCCCCceEE-EEcCCcEEEEEccCCCCeeEEeeeeec-----C-CCCeEEEEE
Q 016769 247 IRNPGIPLT---AMKVH-LEPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINL-----E-RPGISGTSI 315 (383)
Q Consensus 247 l~~~~~~~~---~~~~h-~~~v~~~~~~~~~~~~~s-~~~d~~i~~wdl~~~~~~~~~~~~~~~-----~-~~~i~~~~~ 315 (383)
+......+. .++.. ...-+.+.|+++++.++. .-.+++|.+++++..++.......... . ......+.+
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i 252 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI 252 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE
Confidence 876442221 22222 234578999999887654 456888999999855554433322221 1 125788999
Q ss_pred CCCCcEEEEEe-CCCcEEEEEcCC--Cc--eEEEecccccceeEEEEeCCCCEEEEEe-CCCcEEEEeCC
Q 016769 316 RPDSKIAATAG-WDRRVRIYNYRK--GS--ALAILKYHHATCNAVSFSSDCKLMASAS-EDSTVALWELY 379 (383)
Q Consensus 316 ~p~~~~l~s~~-~dg~i~iwd~~~--~~--~~~~~~~h~~~v~~v~~spd~~~las~s-~d~~i~~w~~~ 379 (383)
+||+++|.++. .+..|.+|+++. ++ .+..+.........++|+|||++|+.+. .++.|.+|++.
T Consensus 253 spdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 253 SPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp -TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred ecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 99999866655 677899999942 33 2333333344578899999999877665 67799999874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.7e-07 Score=84.37 Aligned_cols=135 Identities=13% Similarity=0.072 Sum_probs=84.6
Q ss_pred CcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceE-EEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCC
Q 016769 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 318 (383)
Q Consensus 240 g~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 318 (383)
..|.+||+.++.. ..+......+....|+|++..++ +.+.++...+|.++..++... .+..+........|+||
T Consensus 220 ~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~---~lt~~~~~~~~~~wSpD 294 (427)
T PRK02889 220 PVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR---RLTQSSGIDTEPFFSPD 294 (427)
T ss_pred cEEEEEECCCCCE--EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE---ECCCCCCCCcCeEEcCC
Confidence 4699999986432 22322234456788999998775 567788878877654333211 12222233456789999
Q ss_pred CcEEEEEeC-CCcEEEEEc--CCCceEEEecccccceeEEEEeCCCCEEEEEeCCC---cEEEEeCCC
Q 016769 319 SKIAATAGW-DRRVRIYNY--RKGSALAILKYHHATCNAVSFSSDCKLMASASEDS---TVALWELYP 380 (383)
Q Consensus 319 ~~~l~s~~~-dg~i~iwd~--~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~---~i~~w~~~~ 380 (383)
|+.|+..+. ++...+|.+ ..++.. .+..+.......+|||||++|+..+.++ .|.+||+..
T Consensus 295 G~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 295 GRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred CCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence 998876654 466677765 444322 2222223344578999999999887665 589999853
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=82.97 Aligned_cols=143 Identities=15% Similarity=0.265 Sum_probs=100.8
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeee-ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeE----------Eee
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV----------IKK 301 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~----------~~~ 301 (383)
++++..|-.|++||-.+ ..+. .++ .-...|.+++|-|.....++.+..+-|.+|..+....... ...
T Consensus 113 fava~nddvVriy~kss-t~pt-~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl 190 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSS-TCPT-KLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVL 190 (445)
T ss_pred hhhhccCcEEEEeccCC-CCCc-eecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhhe
Confidence 55678899999999655 4433 233 3356899999977666555555566699998753211100 000
Q ss_pred eeecCCCCeEEEEECCCCcEEEEEeC-CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 302 EINLERPGISGTSIRPDSKIAATAGW-DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 302 ~~~~~~~~i~~~~~~p~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
... ....|+++.+.+||..+++++. |..|+|||.+++..+.....-...+.-+.|||||.+|..+.-|+.-++|+.
T Consensus 191 ~~p-gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 191 QDP-GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred eCC-CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence 111 2246899999999999998884 778999999988765433233445777899999999999999999999964
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-06 Score=83.51 Aligned_cols=133 Identities=17% Similarity=0.057 Sum_probs=83.5
Q ss_pred CCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceE-EEEcCC--cEEEEEccCCCCeeEEeeeeecCCCCeEEEEE
Q 016769 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSI 315 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~--~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (383)
+..|.+||+..+.. ..+..+........|++++..++ +.+.++ .|.+||++..... .+..+.......+|
T Consensus 227 ~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-----~lt~~~~~~~~~~~ 299 (433)
T PRK04922 227 RSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-----RLTNHFGIDTEPTW 299 (433)
T ss_pred CcEEEEEECCCCCE--EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-----ECccCCCCccceEE
Confidence 44699999976432 22333333445678999998764 445555 4888888654311 12222223456889
Q ss_pred CCCCcEEEEEeC-CCc--EEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCC---cEEEEeCC
Q 016769 316 RPDSKIAATAGW-DRR--VRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS---TVALWELY 379 (383)
Q Consensus 316 ~p~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~---~i~~w~~~ 379 (383)
+||+++|+.++. ++. |+++|+.+++.. .+..+.......+|||||++++..+.++ .|.+||+.
T Consensus 300 spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 300 APDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence 999998887664 444 666677666533 2222334455689999999988766543 58899874
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-06 Score=83.09 Aligned_cols=189 Identities=13% Similarity=0.095 Sum_probs=107.3
Q ss_pred ccCCCCCceeeecc-CCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCc-
Q 016769 164 DVPAEGPKYMAVAG-EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS- 241 (383)
Q Consensus 164 ~~~~~~~~~~~~~g-~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~- 241 (383)
.++++|++++.++. ..+..|.+||+++++.............+ .+.|+ +...+++.+.++.
T Consensus 208 ~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~--------------~~SPD---G~~la~~~~~~g~~ 270 (435)
T PRK05137 208 RFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAP--------------RFSPD---GRKVVMSLSQGGNT 270 (435)
T ss_pred EECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCc--------------EECCC---CCEEEEEEecCCCc
Confidence 35577765444432 22468999999887642211111000111 23333 2222345555555
Q ss_pred -EEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEE-cCC--cEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC
Q 016769 242 -ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 317 (383)
Q Consensus 242 -i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~--~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p 317 (383)
|.+||+++.. ...+..+........|++++..++..+ .++ .|.++|++...... +...........|+|
T Consensus 271 ~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-----lt~~~~~~~~~~~Sp 343 (435)
T PRK05137 271 DIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-----ISFGGGRYSTPVWSP 343 (435)
T ss_pred eEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-----eecCCCcccCeEECC
Confidence 6677887643 344555555566788999988776555 333 46677765432211 112233456678999
Q ss_pred CCcEEEEEeCC---CcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCC------cEEEEeC
Q 016769 318 DSKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS------TVALWEL 378 (383)
Q Consensus 318 ~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~------~i~~w~~ 378 (383)
||++|+..+.+ ..|.+||+..+.. ..+. ....+....|+|||++|+..+.++ .+.+.|+
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 99998877654 3688888865443 2332 223466789999999887765532 3555555
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-07 Score=76.84 Aligned_cols=101 Identities=16% Similarity=0.280 Sum_probs=73.6
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcC---CcEEEEEccCCCCeeEEeeeeecCCCC
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTGSCVIKKEINLERPG 309 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d---~~i~~wdl~~~~~~~~~~~~~~~~~~~ 309 (383)
++.|..++.|.+||++. ..+..+ +..++..+.|+|.+..++.++.+ |.+.+||.+... .+ ...+...
T Consensus 76 vi~g~~~~~v~lyd~~~--~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~--~i----~~~~~~~ 145 (194)
T PF08662_consen 76 VIYGSMPAKVTLYDVKG--KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK--KI----STFEHSD 145 (194)
T ss_pred EEEccCCcccEEEcCcc--cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE--Ee----eccccCc
Confidence 44566788999999962 233333 45677899999999999888754 569999997432 21 1223346
Q ss_pred eEEEEECCCCcEEEEEeC------CCcEEEEEcCCCceEEE
Q 016769 310 ISGTSIRPDSKIAATAGW------DRRVRIYNYRKGSALAI 344 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~------dg~i~iwd~~~~~~~~~ 344 (383)
++.++|+|||++|++++. |..++||+. .|+.+..
T Consensus 146 ~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~ 185 (194)
T PF08662_consen 146 ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYK 185 (194)
T ss_pred EEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEe
Confidence 889999999999999875 788899998 4665543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.9e-06 Score=75.38 Aligned_cols=130 Identities=15% Similarity=0.279 Sum_probs=89.9
Q ss_pred CCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEE-Ec-CCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEEC
Q 016769 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG-GA-DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 316 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~-~~-d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (383)
..++.+.++..... .-.+ ..++||.++.|++++..++.+ |. =..+.++|++. ... .....+.-+++.|+
T Consensus 250 Eq~Lyll~t~g~s~-~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~---~~v----~df~egpRN~~~fn 320 (566)
T KOG2315|consen 250 EQTLYLLATQGESV-SVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG---KPV----FDFPEGPRNTAFFN 320 (566)
T ss_pred cceEEEEEecCceE-EEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC---CEe----EeCCCCCccceEEC
Confidence 44677777662211 1111 136799999999998765443 32 23467888753 222 23344566789999
Q ss_pred CCCcEEEEEeC---CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeC------CCcEEEEeCC
Q 016769 317 PDSKIAATAGW---DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE------DSTVALWELY 379 (383)
Q Consensus 317 p~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~------d~~i~~w~~~ 379 (383)
|.|++++.+|. -|.+-+||+.+.+.+..+. .....-.+|+|||+++.|+.- |+.++||+++
T Consensus 321 p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~--a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 321 PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK--AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCCCEEEEeecCCCCCceEEEeccchhhccccc--cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 99999999986 4789999999988887765 333455689999998877653 6889999874
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-07 Score=83.88 Aligned_cols=187 Identities=20% Similarity=0.265 Sum_probs=116.2
Q ss_pred eccCCcceEEEEecCC-CCee--eEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC
Q 016769 175 VAGEQLSEVEIWDLNT-AERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251 (383)
Q Consensus 175 ~~g~~~~~i~~Wdl~~-~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~ 251 (383)
+..+.|+.+|+-.+.. +.+- ..+. .+.+....+++.++.|. .+.++++|+.++=+|++...
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~----------~h~g~vhklav~p~sp~------~f~S~geD~~v~~~Dlr~~~ 266 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVENTKRLA----------PHEGPVHKLAVEPDSPK------PFLSCGEDAVVFHIDLRQDV 266 (559)
T ss_pred eeccccCceeeeeeccccceecceecc----------cccCccceeeecCCCCC------cccccccccceeeeeeccCC
Confidence 3345577888766533 2221 1111 12334444555444432 47899999999999998743
Q ss_pred Cceeee--ecccc----CeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCe---eEEee---e-e-ecCCCCeEEEEEC
Q 016769 252 IPLTAM--KVHLE----PVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGS---CVIKK---E-I-NLERPGISGTSIR 316 (383)
Q Consensus 252 ~~~~~~--~~h~~----~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~---~~~~~---~-~-~~~~~~i~~~~~~ 316 (383)
+...+ ..+.. ....++.+|... .+++++.|.-+++||...-... ..+.+ . + .-..-.|++++|+
T Consensus 267 -pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys 345 (559)
T KOG1334|consen 267 -PAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS 345 (559)
T ss_pred -ccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec
Confidence 22221 12222 245677788765 5789999999999987532111 00000 0 0 1112358999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCC--C----------ceEEE-eccccc--ceeEEEE-eCCCCEEEEEeCCCcEEEEeC
Q 016769 317 PDSKIAATAGWDRRVRIYNYRK--G----------SALAI-LKYHHA--TCNAVSF-SSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 317 p~~~~l~s~~~dg~i~iwd~~~--~----------~~~~~-~~~h~~--~v~~v~~-spd~~~las~s~d~~i~~w~~ 378 (383)
.++.-+.++-.|--|++|+-.- | ..++. ++||.+ .|..|-| -|...+++|||.=|.|.||+=
T Consensus 346 h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 346 HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence 8877777778898999995532 2 11233 788875 5777765 588889999999999999974
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-05 Score=71.37 Aligned_cols=284 Identities=14% Similarity=0.168 Sum_probs=147.9
Q ss_pred eeEEEeCCCCeEEEecC----CCeEEEeeCccc-cccccc-ccccccceeeeeeecCCCCcceeEec-ccCCeEEEeecC
Q 016769 22 TDVCFHQTKPILFAGTT----GGELRIWDTVQH-RTVSSS-WVHSAAHGIVSVATGPSIGLNKVISQ-GRDGTVKCWDIE 94 (383)
Q Consensus 22 ~~v~f~~~~~~L~sgs~----D~~v~vW~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~-~~D~ti~~Wd~~ 94 (383)
..|+++|++++|++..+ ++.|..|.+... ..+..+ ........-..+++.+ +++.|+.+ -.++++.++++.
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~--~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP--DGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT--TSSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec--CCCEEEEEEccCCeEEEEEcc
Confidence 45789999999999887 468888887653 222111 1111122334466666 35666554 578999999997
Q ss_pred CCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceee
Q 016769 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMA 174 (383)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (383)
....+....... .. .-. .+.. ... ...+. -...+.++++ ++.
T Consensus 118 ~~g~l~~~~~~~-~~-------~g~-g~~~-~rq-------------------------~~~h~--H~v~~~pdg~-~v~ 159 (345)
T PF10282_consen 118 DDGSLGEVVQTV-RH-------EGS-GPNP-DRQ-------------------------EGPHP--HQVVFSPDGR-FVY 159 (345)
T ss_dssp TTSEEEEEEEEE-ES-------EEE-ESST-TTT-------------------------SSTCE--EEEEE-TTSS-EEE
T ss_pred CCcccceeeeec-cc-------CCC-CCcc-ccc-------------------------ccccc--eeEEECCCCC-EEE
Confidence 642111000000 00 000 0000 000 00000 0112334443 455
Q ss_pred eccCCcceEEEEecCCCC-eeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCc
Q 016769 175 VAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 253 (383)
Q Consensus 175 ~~g~~~~~i~~Wdl~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~ 253 (383)
+..-....|.++++.... .+.....-. .+.+.+=+- ..|.|+ +....++.-.+++|.++++....-.
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~-------~~~G~GPRh--~~f~pd---g~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIK-------VPPGSGPRH--LAFSPD---GKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEE-------CSTTSSEEE--EEE-TT---SSEEEEEETTTTEEEEEEEETTTTE
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccc-------cccCCCCcE--EEEcCC---cCEEEEecCCCCcEEEEeecccCCc
Confidence 554334579999997655 222211000 001111111 124443 2233456778889999988722211
Q ss_pred eeeee------c-c--ccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEE
Q 016769 254 LTAMK------V-H--LEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 323 (383)
Q Consensus 254 ~~~~~------~-h--~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 323 (383)
+..++ . . ......+.++++++.++.+. ..+.|.+|+++..++.................++++|+|++|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 228 LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEE
T ss_pred eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEE
Confidence 21111 1 1 11456788899999876655 5678999999766665555555555455689999999999988
Q ss_pred EEe-CCCcEEEEEcC--CCceEEEec-ccccceeEEEE
Q 016769 324 TAG-WDRRVRIYNYR--KGSALAILK-YHHATCNAVSF 357 (383)
Q Consensus 324 s~~-~dg~i~iwd~~--~~~~~~~~~-~h~~~v~~v~~ 357 (383)
++. .+++|.+|+++ +|.....-. -......||.|
T Consensus 308 Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 308 VANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 777 67799999874 555332221 12234566665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.9e-08 Score=99.24 Aligned_cols=204 Identities=14% Similarity=0.236 Sum_probs=128.7
Q ss_pred eeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeec
Q 016769 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (383)
Q Consensus 14 l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~ 93 (383)
++-|-..|.++.=||.-.+-+||+.||.|++|....+..+......+. ..+....|+. .|+.+..+-.||-+.+|..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~--qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNH--QGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcc--cCCceeeeccCCceeeccc
Confidence 445567888888899999999999999999999876655443332222 3455556655 4788888889999999987
Q ss_pred CCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCcee
Q 016769 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYM 173 (383)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (383)
... +...- .. +.+ ... .+.
T Consensus 2281 ~pk-----~~~s~---------------qc---------------------------hnk-------~~~-------Df~ 2299 (2439)
T KOG1064|consen 2281 SPK-----PYTSW---------------QC---------------------------HNK-------ALS-------DFR 2299 (2439)
T ss_pred CCc-----ceecc---------------cc---------------------------CCc-------ccc-------cee
Confidence 521 00000 00 000 000 001
Q ss_pred eeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCc
Q 016769 174 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 253 (383)
Q Consensus 174 ~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~ 253 (383)
+++ + + +.+. + ..+.++.+.+||.-.+...
T Consensus 2300 Fi~-s----~----------~~ta--------------g----------------------~s~d~~n~~lwDtl~~~~~ 2328 (2439)
T KOG1064|consen 2300 FIG-S----L----------LATA--------------G----------------------RSSDNRNVCLWDTLLPPMN 2328 (2439)
T ss_pred eee-h----h----------hhcc--------------c----------------------cCCCCCcccchhcccCccc
Confidence 110 0 0 0000 0 1133667778875432211
Q ss_pred eeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEE
Q 016769 254 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 333 (383)
Q Consensus 254 ~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~i 333 (383)
-..-+.|-+.++++.+-|.-..+++||.+|.|++||+...+-++.+.. +. ...+|++|+..|.|+|
T Consensus 2329 s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------------~~-~~~~f~~~ss~g~ikI 2394 (2439)
T KOG1064|consen 2329 SLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------------LD-TREYFVTGSSEGNIKI 2394 (2439)
T ss_pred ceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------------hh-hhheeeccCcccceEE
Confidence 111267888999999999989999999999999999975443222211 23 4458999999999999
Q ss_pred EEcCCCceEEEec
Q 016769 334 YNYRKGSALAILK 346 (383)
Q Consensus 334 wd~~~~~~~~~~~ 346 (383)
|++.....+.++.
T Consensus 2395 w~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2395 WRLSEFGLLHTFP 2407 (2439)
T ss_pred EEccccchhhcCc
Confidence 9998766555543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.7e-07 Score=82.90 Aligned_cols=145 Identities=12% Similarity=0.167 Sum_probs=103.2
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee--cCC---
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN--LER--- 307 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~--~~~--- 307 (383)
+..++....|.-++|+.+. -+..++.....++++.+++....++.|+.+|.+..||-...+....+..... .+.
T Consensus 148 ly~~gsg~evYRlNLEqGr-fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGR-FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGD 226 (703)
T ss_pred EEEeecCcceEEEEccccc-cccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcccc
Confidence 4455555677778888743 3555666667899999988766667777799999999876554333322211 111
Q ss_pred --CCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEe-cccccceeEEEEeCC--CCEEEEEeCCCcEEEEeCC
Q 016769 308 --PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSD--CKLMASASEDSTVALWELY 379 (383)
Q Consensus 308 --~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~spd--~~~las~s~d~~i~~w~~~ 379 (383)
..|+++.|+.+|-.+++|+.+|.+.|||+++.+++..- .+..-+|..+.|.+. ++.++|. .-.+++|||--
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~ 302 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDEC 302 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccc
Confidence 24899999999999999999999999999998877432 234568999999765 3455544 45678999864
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00012 Score=66.52 Aligned_cols=268 Identities=13% Similarity=0.089 Sum_probs=142.9
Q ss_pred CeEEEeeCcccccccccccccccceeeeeeecCCCCccee-Eecc---------cCCeEEEeecCCCCCCCCCeeeeecC
Q 016769 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQG---------RDGTVKCWDIENGGLSSNPSLTIKTN 109 (383)
Q Consensus 40 ~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~---------~D~ti~~Wd~~~~~~~~~~~~~~~~~ 109 (383)
++|.|-|..+.+.+..+.....+++ + ++++ ++.+ ++.+ .+..|.+||.++.+... .+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~---~-~spD--g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~----~i~~- 95 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP---V-VASD--GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA----DIEL- 95 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce---e-ECCC--CCEEEEEeccccccccCCCCCEEEEEECccCcEEe----EEcc-
Confidence 7899999887776655443333332 2 5553 4444 4556 68999999998864211 0000
Q ss_pred ceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCC-cceEEEEec
Q 016769 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQ-LSEVEIWDL 188 (383)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~i~~Wdl 188 (383)
-..|... .........++++|+ ++.++... ++.+-+.|+
T Consensus 96 ---------p~~p~~~------------------------------~~~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~ 135 (352)
T TIGR02658 96 ---------PEGPRFL------------------------------VGTYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDL 135 (352)
T ss_pred ---------CCCchhh------------------------------ccCccceEEECCCCC-EEEEecCCCCCEEEEEEC
Confidence 0000000 000011123456664 55555544 789999999
Q ss_pred CCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCce-ee---eeccccCe
Q 016769 189 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TA---MKVHLEPV 264 (383)
Q Consensus 189 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~-~~---~~~h~~~v 264 (383)
.+++.+..+.-+. |..+ +...+ .. ++ .-+.||......+...+... .. +.....++
T Consensus 136 ~~~kvv~ei~vp~--------------~~~v--y~t~e-~~--~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v 195 (352)
T TIGR02658 136 EGKAFVRMMDVPD--------------CYHI--FPTAN-DT--FF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYL 195 (352)
T ss_pred CCCcEEEEEeCCC--------------CcEE--EEecC-Cc--cE-EEeecCceEEEEecCCCceEEeeeeeecCCcccc
Confidence 9999877765211 1111 10000 11 12 22235555444333322210 00 10000111
Q ss_pred EEE-EEeC-CCCceEEEEcCCcEEEEEccCCCCeeEEeeee--------ecCCCCeEEEEECCCCcEEEEEe--------
Q 016769 265 LCL-SIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEI--------NLERPGISGTSIRPDSKIAATAG-------- 326 (383)
Q Consensus 265 ~~~-~~~~-~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~--------~~~~~~i~~~~~~p~~~~l~s~~-------- 326 (383)
..- .+.+ ++..+.. +..|.|.+.|+....-........ ....++...++++|+++.+....
T Consensus 196 ~~rP~~~~~dg~~~~v-s~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 196 INHPAYSNKSGRLVWP-TYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTH 274 (352)
T ss_pred ccCCceEcCCCcEEEE-ecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccc
Confidence 110 2233 4444433 344999999875432221111110 11123344599999998766532
Q ss_pred --CCCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEe-CCCcEEEEeCCC
Q 016769 327 --WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASAS-EDSTVALWELYP 380 (383)
Q Consensus 327 --~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s-~d~~i~~w~~~~ 380 (383)
..+.|.++|..+++.+..+.- ...+..++|+||++ +|.+.. .++.|.+.|...
T Consensus 275 k~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 275 KTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred cCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 225899999999999887753 34789999999999 777666 578899999753
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.2e-06 Score=79.29 Aligned_cols=132 Identities=17% Similarity=0.103 Sum_probs=86.1
Q ss_pred CcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceE-EEEcCC--cEEEEEccCCCCeeEEeeeeecCCCCeEEEEEC
Q 016769 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 316 (383)
Q Consensus 240 g~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~--~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (383)
..|.+||+.++.. ..+..+...+....|++++..++ +.+.++ .|.+||++..... .+..+........|+
T Consensus 214 ~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-----~l~~~~~~~~~~~~s 286 (417)
T TIGR02800 214 PEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-----RLTNGPGIDTEPSWS 286 (417)
T ss_pred cEEEEEECCCCCE--EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-----ECCCCCCCCCCEEEC
Confidence 5799999986432 22333445566788999988765 444444 4777777643211 111122223456899
Q ss_pred CCCcEEEEEeCC-C--cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCC---cEEEEeCC
Q 016769 317 PDSKIAATAGWD-R--RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS---TVALWELY 379 (383)
Q Consensus 317 p~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~---~i~~w~~~ 379 (383)
||++.|+..+.. + .|+++|+.+++.. .+..+...+...+|+|||++++.++.++ .|.+||+.
T Consensus 287 ~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 287 PDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 999988766543 3 5777888766643 3444555677889999999999888876 77888864
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4e-06 Score=79.82 Aligned_cols=132 Identities=9% Similarity=0.062 Sum_probs=85.6
Q ss_pred CCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceE-EEEcCCc--EEEEEccCCCCeeEEeeeeecCCCCeEEEEE
Q 016769 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQK--IVLYNLDHSTGSCVIKKEINLERPGISGTSI 315 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~--i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (383)
+..|.+||+.++. ...+..+...+....|+|++..++ +.+.++. |.+||++... .. .+..+........|
T Consensus 225 ~~~i~~~dl~~g~--~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~---~Lt~~~~~~~~~~~ 297 (435)
T PRK05137 225 RPRVYLLDLETGQ--RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT--TT---RLTDSPAIDTSPSY 297 (435)
T ss_pred CCEEEEEECCCCc--EEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc--eE---EccCCCCccCceeE
Confidence 5689999997643 233444555677888999998764 5566665 5556765432 11 12222233456889
Q ss_pred CCCCcEEEEEeC-CC--cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCC---cEEEEeC
Q 016769 316 RPDSKIAATAGW-DR--RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS---TVALWEL 378 (383)
Q Consensus 316 ~p~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~---~i~~w~~ 378 (383)
+|||+.|+..+. +| .|+++|+..++.. .+..+...+....|||||++|+..+.++ .|.+||+
T Consensus 298 spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 298 SPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred cCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence 999998887663 33 6888888765543 3333445566788999999998876543 5777776
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.1e-06 Score=78.20 Aligned_cols=184 Identities=17% Similarity=0.164 Sum_probs=103.2
Q ss_pred ccCCCCCceeeecc-CCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC--
Q 016769 164 DVPAEGPKYMAVAG-EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-- 240 (383)
Q Consensus 164 ~~~~~~~~~~~~~g-~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg-- 240 (383)
.++++++.++.+.- .....|++||+.+++.............+ .+.|+. ...+++...++
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~--------------~~spDg---~~l~~~~~~~~~~ 258 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAP--------------AFSPDG---SKLAVSLSKDGNP 258 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccce--------------EECCCC---CEEEEEECCCCCc
Confidence 35566654333321 12257999999887642211111000011 233332 22233444444
Q ss_pred cEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEc-CC--cEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC
Q 016769 241 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 317 (383)
Q Consensus 241 ~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~--~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p 317 (383)
.|.+||+.+.. ...+..+........|++++..++..+. ++ .|.++|++... .. .+...........|+|
T Consensus 259 ~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~---~l~~~~~~~~~~~~sp 331 (417)
T TIGR02800 259 DIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VR---RLTFRGGYNASPSWSP 331 (417)
T ss_pred cEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EE---EeecCCCCccCeEECC
Confidence 58888987643 2334344444445678888887765543 34 45566655322 11 1222334566788999
Q ss_pred CCcEEEEEeCCC---cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcE
Q 016769 318 DSKIAATAGWDR---RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTV 373 (383)
Q Consensus 318 ~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i 373 (383)
++++++.++.++ .|.+||+.++... .+... ......+|+|||++|+..+.++..
T Consensus 332 dg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~ 388 (417)
T TIGR02800 332 DGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGR 388 (417)
T ss_pred CCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCc
Confidence 999999888876 8899999875533 33222 223456899999988887776543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.8e-08 Score=82.96 Aligned_cols=145 Identities=11% Similarity=0.140 Sum_probs=103.0
Q ss_pred EEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEE
Q 016769 234 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGT 313 (383)
Q Consensus 234 ~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~ 313 (383)
++.+.+..|.+-|++++.. ..+. ....|..+.|...++.+..|+..|.|..+||+.+..-......--.|.+.++++
T Consensus 228 fs~G~sqqv~L~nvetg~~--qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ--QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc--cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence 3445566788888776432 2233 345778888888788888999999999999976421111111223466778887
Q ss_pred EECC-CCcEEEEEeCCCcEEEEEcCCCce---EEEecccccceeEEE--EeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 314 SIRP-DSKIAATAGWDRRVRIYNYRKGSA---LAILKYHHATCNAVS--FSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 314 ~~~p-~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~v~--~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
..-. +++++.+.+.+|+|++||++--+. +.++.||.+.-.-+- ..+....++++++|+..+||.+...
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 7544 678899999999999999976555 778888876543333 3566778999999999999998643
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.8e-05 Score=70.22 Aligned_cols=132 Identities=14% Similarity=0.257 Sum_probs=88.3
Q ss_pred CCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEE--cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEEC
Q 016769 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 316 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~--~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (383)
...+.|++++...++. ...-.++|..++|.|....++..+ .+..+.++|++.. ..+ ......-+.+.|+
T Consensus 254 esnLyl~~~~e~~i~V--~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~----~~Pe~~rNT~~fs 324 (561)
T COG5354 254 ESNLYLLRITERSIPV--EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRF----YFPEQKRNTIFFS 324 (561)
T ss_pred cceEEEEeecccccce--eccccccceeeeecccCCceeEEecccccceeecccccc---eEE----ecCCccccccccc
Confidence 5678889887544333 334468999999988877765544 5777888888632 111 1122334678899
Q ss_pred CCCcEEEEEeCC---CcEEEEEcCCCceEE-EecccccceeEEEEeCCCCEEEEE------eCCCcEEEEeCCCC
Q 016769 317 PDSKIAATAGWD---RRVRIYNYRKGSALA-ILKYHHATCNAVSFSSDCKLMASA------SEDSTVALWELYPP 381 (383)
Q Consensus 317 p~~~~l~s~~~d---g~i~iwd~~~~~~~~-~~~~h~~~v~~v~~spd~~~las~------s~d~~i~~w~~~~~ 381 (383)
|.+++++.++.| |.|-+||........ .+.+- ...-+.|+||++++-+. -.|..|+|||++-+
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred CcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 999999998875 578899986544332 44322 23445799999966543 34789999999743
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-06 Score=75.34 Aligned_cols=137 Identities=15% Similarity=0.259 Sum_probs=96.4
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCce-EEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
+...+.|+.|.+|++.++. -...++....++..+.++|+++.+ .+...|-+|.+|.+.+..+.. .+..+ ..+.
T Consensus 64 lC~~yk~~~vqvwsl~Qpe-w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK---~~~k 137 (447)
T KOG4497|consen 64 LCVAYKDPKVQVWSLVQPE-WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHPK---TNVK 137 (447)
T ss_pred eeeeeccceEEEEEeecce-eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--ecccc---cCce
Confidence 4456889999999998754 356677777889999999999764 566778999999998654432 22222 3467
Q ss_pred EEEECCCCcEEEEEeCCC------------------------------------cEEEEEcCCCceEEEecccc-cceeE
Q 016769 312 GTSIRPDSKIAATAGWDR------------------------------------RVRIYNYRKGSALAILKYHH-ATCNA 354 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~dg------------------------------------~i~iwd~~~~~~~~~~~~h~-~~v~~ 354 (383)
.++|+|||++.+..+.-. .+.+||--- .++.+.+|. -.+..
T Consensus 138 g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L--eykv~aYe~~lG~k~ 215 (447)
T KOG4497|consen 138 GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL--EYKVYAYERGLGLKF 215 (447)
T ss_pred eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh--hheeeeeeeccceeE
Confidence 889999999887766422 122222211 112233444 35889
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEe
Q 016769 355 VSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 355 v~~spd~~~las~s~d~~i~~w~ 377 (383)
++|+|-+++||.|+.|+++|+-|
T Consensus 216 v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 216 VEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred EEeccccceEEeeccchhhhhhc
Confidence 99999999999999999998754
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.4e-07 Score=95.44 Aligned_cols=172 Identities=14% Similarity=0.248 Sum_probs=119.4
Q ss_pred eccCCcceEEEEecCCCCeeeEeccC--cCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 175 VAGEQLSEVEIWDLNTAERCTRLHQN--SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 175 ~~g~~~~~i~~Wdl~~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
++|++|+.+++|.-..++.+...... ..+....|. .+|.+ ..++-.||.+.+|... ..
T Consensus 2224 ltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~-----------------~qGnk-~~i~d~dg~l~l~q~~--pk 2283 (2439)
T KOG1064|consen 2224 LTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFN-----------------HQGNK-FGIVDGDGDLSLWQAS--PK 2283 (2439)
T ss_pred EecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhc-----------------ccCCc-eeeeccCCceeecccC--Cc
Confidence 46788999999998888866554321 111111111 12222 3345569999999976 34
Q ss_pred ceeeeeccccCeEEEEEeCCCCceEEEE---cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCC
Q 016769 253 PLTAMKVHLEPVLCLSIDESCNGGISGG---ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 329 (383)
Q Consensus 253 ~~~~~~~h~~~v~~~~~~~~~~~~~s~~---~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg 329 (383)
+...-+.|......+.|-.+ .+++.+ .++.+.+||-......... ...|.++.+++++-|..+.+++||.+|
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~s--~~~tag~s~d~~n~~lwDtl~~~~~s~v---~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIGS--LLATAGRSSDNRNVCLWDTLLPPMNSLV---HTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred ceeccccCCccccceeeeeh--hhhccccCCCCCcccchhcccCccccee---eeecCCCceEEEEcCcceEEEecCCcC
Confidence 56666778776666666443 234433 4677999997654433322 367889999999999999999999999
Q ss_pred cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 330 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 330 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
.|.+||++..+.+.+++. +. ...++++|+..|.|+||++..+
T Consensus 2359 ~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 999999987766655543 34 4468999999999999999744
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-06 Score=74.37 Aligned_cols=69 Identities=17% Similarity=0.284 Sum_probs=51.2
Q ss_pred CCeEEEEECCCCcEEEEEeCCCcEEEEEcCC-CceEEEeccccc------------ce---eEEEEeCCCCEEEEEeCCC
Q 016769 308 PGISGTSIRPDSKIAATAGWDRRVRIYNYRK-GSALAILKYHHA------------TC---NAVSFSSDCKLMASASEDS 371 (383)
Q Consensus 308 ~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~------------~v---~~v~~spd~~~las~s~d~ 371 (383)
.+|+.+.|+++|+|+++-+. -+++|||..- ..+++++.-|.. .| ..+.||.|.+.+.+||..+
T Consensus 281 sSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~N 359 (460)
T COG5170 281 SSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSN 359 (460)
T ss_pred hhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccccc
Confidence 45788999999999987554 4899999953 566777654532 22 4567999999999999887
Q ss_pred cEEEEe
Q 016769 372 TVALWE 377 (383)
Q Consensus 372 ~i~~w~ 377 (383)
.--++-
T Consensus 360 Nfgiyp 365 (460)
T COG5170 360 NFGIYP 365 (460)
T ss_pred ceeeec
Confidence 665553
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.2e-05 Score=66.20 Aligned_cols=185 Identities=15% Similarity=0.079 Sum_probs=119.5
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCC----CceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG----RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
.++.|+..+...+|...+.+...++-.. +..+ +-.|.. ...+..++.|.++++.++.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~--------snn~v~~~~r~cd~-----------~~~~~i~sndht~k~~~~~ 146 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDV--------SNNDVTLVKRYCDL-----------KFPLNIASNDHTGKTMVVS 146 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecc--------cccchhhhhhhccc-----------ccceeeccCCcceeEEEEe
Confidence 3455666789999999876643322110 0111 111110 1136678899999999886
Q ss_pred CCCCceeeeeccccC--eEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEe
Q 016769 249 NPGIPLTAMKVHLEP--VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 326 (383)
Q Consensus 249 ~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~ 326 (383)
-... ....|... +..+.++++...+++.+....|.+|.++........... ......-.+.+|+.....+|++.
T Consensus 147 ~~s~---~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-a~t~D~gF~~S~s~~~~~FAv~~ 222 (344)
T KOG4532|consen 147 GDSN---KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-APTSDHGFYNSFSENDLQFAVVF 222 (344)
T ss_pred cCcc---cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe-cccCCCceeeeeccCcceEEEEe
Confidence 4321 22334443 677888999888888888999999999865533322112 22233456788998888999999
Q ss_pred CCCcEEEEEcCCCce-E----EEecccccceeEEEEeCCCC--EEEEEeCCCcEEEEeCCC
Q 016769 327 WDRRVRIYNYRKGSA-L----AILKYHHATCNAVSFSSDCK--LMASASEDSTVALWELYP 380 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~-~----~~~~~h~~~v~~v~~spd~~--~las~s~d~~i~~w~~~~ 380 (383)
.||++.|||++.... + .+-..|.+.+..+.|+|-|. +|...=.=+.+.+-|+..
T Consensus 223 Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 223 QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 999999999976432 2 22234888999999998664 444444445677777653
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-06 Score=76.84 Aligned_cols=75 Identities=21% Similarity=0.362 Sum_probs=63.5
Q ss_pred cCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEe-cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 305 LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 305 ~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
.|.+.+..++++||+++|+++..|..||+-.......+..+ .||++-|..++.-+ +..|+|||.|+++++||+..
T Consensus 149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEeccc
Confidence 45567899999999999999999999999888665555444 47999999999865 56799999999999999853
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.9e-05 Score=72.58 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=79.5
Q ss_pred cEEEEeCCCC--CCceeeeeccccCeEEEEEeCCCCceEEEE-cCCcEEEEEccC--CCCeeEEeeeeecCCCCeEEEEE
Q 016769 241 SILVWDIRNP--GIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDH--STGSCVIKKEINLERPGISGTSI 315 (383)
Q Consensus 241 ~i~~wdl~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~--~~~~~~~~~~~~~~~~~i~~~~~ 315 (383)
.+.+|++... +.+......+........|+|++..++..+ .++...+|.++. ..+.. ..+......+....|
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~---~~lt~~~~~~~~p~w 334 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP---RLLTKKYRNSSCPAW 334 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce---EEeccCCCCccceeE
Confidence 3455776542 222222222223335678999998776544 466666664432 22111 112222234567889
Q ss_pred CCCCcEEEEEeCC---CcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeC---CCcEEEEeCC
Q 016769 316 RPDSKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE---DSTVALWELY 379 (383)
Q Consensus 316 ~p~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~---d~~i~~w~~~ 379 (383)
+|||+.|+..+.+ ..|.+||+.+++... +......+....|+|||++|+..+. ...|.+||+.
T Consensus 335 SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 335 SPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 9999988866543 469999998887543 3223345677899999998775433 3457777764
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.4e-06 Score=69.80 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=96.2
Q ss_pred EEEEeCCCcEEEEeCCCCCC--ceeeeecc---ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEee--eeec
Q 016769 233 VLAGYEDGSILVWDIRNPGI--PLTAMKVH---LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK--EINL 305 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~--~~~~~~~h---~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~--~~~~ 305 (383)
++-+..+|.|.++....... .+..+..- .....++.|+..+..++++-.+|.+..-+... . .+.+ ..+.
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~---~-~le~vq~wk~ 163 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETE---M-VLEKVQTWKV 163 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecce---e-eeeecccccc
Confidence 44566688888886532110 01111111 11234667788777888888888887554322 1 1222 4566
Q ss_pred CCCCeEEEEECC-CCcEEEEEeCCCcEEEEEcC-CCceEEE-ecccccceeEEEEeCC-CCEEEEEeCCCcEEEEeCC
Q 016769 306 ERPGISGTSIRP-DSKIAATAGWDRRVRIYNYR-KGSALAI-LKYHHATCNAVSFSSD-CKLMASASEDSTVALWELY 379 (383)
Q Consensus 306 ~~~~i~~~~~~p-~~~~l~s~~~dg~i~iwd~~-~~~~~~~-~~~h~~~v~~v~~spd-~~~las~s~d~~i~~w~~~ 379 (383)
|+.++....|+- +.+.+.+|+.|+.+.-||++ .++.+.. .+-|...|.+|.-+|. +.++++|+.|-+|++||..
T Consensus 164 He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 164 HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence 777777788863 45789999999999999998 4455544 4568888999988864 5599999999999999975
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.9e-05 Score=72.32 Aligned_cols=188 Identities=17% Similarity=0.183 Sum_probs=100.8
Q ss_pred ccCCCCCceeeeccCC-cceEEEEecCCCCeeeEecc-CcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC-
Q 016769 164 DVPAEGPKYMAVAGEQ-LSEVEIWDLNTAERCTRLHQ-NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG- 240 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~-~~~i~~Wdl~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg- 240 (383)
.++++|++++.++-.. ...|.+||+.+++.. .+.. ......+ .+.|+ +...+++...++
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~--------------~~SpD---G~~la~~~~~~g~ 266 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAP--------------AWSPD---GSKLAFVLSKDGN 266 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCe--------------EECCC---CCEEEEEEccCCC
Confidence 4557776544443221 246899999887632 2211 1000111 23333 222233444444
Q ss_pred -cEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEE-cCCc--EEEEEccCCCCeeEEeeeeecCCCCeEEEEEC
Q 016769 241 -SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQK--IVLYNLDHSTGSCVIKKEINLERPGISGTSIR 316 (383)
Q Consensus 241 -~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~--i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (383)
.|.+||+.++. ...+..+........|++++..++..+ .++. |.++|+....... + ...........|+
T Consensus 267 ~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l----t~~~~~~~~~~~S 339 (430)
T PRK00178 267 PEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V----TFVGNYNARPRLS 339 (430)
T ss_pred ceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e----ecCCCCccceEEC
Confidence 68888987643 233444444455677889888765444 3444 5556665433111 1 1111223456799
Q ss_pred CCCcEEEEEeCCC---cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCC-Cc--EEEEeC
Q 016769 317 PDSKIAATAGWDR---RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED-ST--VALWEL 378 (383)
Q Consensus 317 p~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d-~~--i~~w~~ 378 (383)
||+++++..+.++ .|.++|+.+++.. .+. +........|+|||++++..+.+ +. +.++++
T Consensus 340 pdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 340 ADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred CCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 9999988776543 5888899877643 222 11122345899999988776654 33 444444
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00025 Score=66.26 Aligned_cols=134 Identities=14% Similarity=0.119 Sum_probs=81.1
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
.++.++.+|.+..||++++.. +-... . .......+ .+..++.++.|+.+..+|.... ....... ........
T Consensus 243 ~vy~~~~~g~l~a~d~~tG~~-~W~~~-~-~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG--~~~W~~~-~~~~~~~s 314 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRSGRV-LWKRD-A-SSYQGPAV--DDNRLYVTDADGVVVALDRRSG--SELWKND-ELKYRQLT 314 (377)
T ss_pred EEEEEEcCCEEEEEECCCCcE-EEeec-c-CCccCceE--eCCEEEEECCCCeEEEEECCCC--cEEEccc-cccCCccc
Confidence 466778899999999987432 21111 1 11111222 2345677788999999988644 2222211 11111112
Q ss_pred EEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 016769 312 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w 376 (383)
...+ .+..+++++.||.++++|..+++.+..++-+...+..--...++ .|..++.||.|..|
T Consensus 315 sp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 315 APAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred cCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 2222 35578889999999999999999998887655443322122243 57789999998876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00037 Score=63.31 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=67.1
Q ss_pred EEEEEeCCCcEEEEeCCCCCC----ceeeeecc-------ccCeEEEEEeCCCCceEEEE----------cCCcEEEEEc
Q 016769 232 NVLAGYEDGSILVWDIRNPGI----PLTAMKVH-------LEPVLCLSIDESCNGGISGG----------ADQKIVLYNL 290 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~----~~~~~~~h-------~~~v~~~~~~~~~~~~~s~~----------~d~~i~~wdl 290 (383)
.+...++ |+|.+.|+..... +...+... -....-+++++++..++... ..+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 3444444 9999999754321 11111110 11233488888888776632 1245777776
Q ss_pred cCCCCeeEEeeeeecCCCCeEEEEECCCCc-EEEEEe-CCCcEEEEEcCCCceEEEe
Q 016769 291 DHSTGSCVIKKEINLERPGISGTSIRPDSK-IAATAG-WDRRVRIYNYRKGSALAIL 345 (383)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~ 345 (383)
... .... .+.. ...+..++|+||++ .+.+.. .++.|.++|..+++.+..+
T Consensus 287 ~t~--kvi~--~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 287 KTG--KRLR--KIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCC--eEEE--EEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 533 3222 2222 24688999999999 777666 5788999999999998877
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.9e-05 Score=70.72 Aligned_cols=190 Identities=19% Similarity=0.207 Sum_probs=98.8
Q ss_pred ccCCCCCceeeeccCC-cceEEEEecCCCCeeeEecc-CcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCc
Q 016769 164 DVPAEGPKYMAVAGEQ-LSEVEIWDLNTAERCTRLHQ-NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 241 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~-~~~i~~Wdl~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~ 241 (383)
.++++|++++.++... ...|.+||+.+++.. .+.. ......+ .+.|+. ...+++...++.
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~--------------~wSPDG---~~La~~~~~~g~ 285 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAP--------------RFSPDG---KKLALVLSKDGQ 285 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCe--------------eECCCC---CEEEEEEeCCCC
Confidence 3557776554443221 236889999887632 2211 1000111 234432 223344555665
Q ss_pred --EEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCC
Q 016769 242 --ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 318 (383)
Q Consensus 242 --i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 318 (383)
|.++|+.++. ...+..+........|++++..++..+ .++...+|-++..++.... +..........+|+||
T Consensus 286 ~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~---Lt~~g~~~~~~~~SpD 360 (448)
T PRK04792 286 PEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR---LTFEGEQNLGGSITPD 360 (448)
T ss_pred eEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---EecCCCCCcCeeECCC
Confidence 7777877532 334444444456678899888765443 3455455443322222211 1112222345689999
Q ss_pred CcEEEEEeC-CC--cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCC-Cc--EEEEeC
Q 016769 319 SKIAATAGW-DR--RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED-ST--VALWEL 378 (383)
Q Consensus 319 ~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d-~~--i~~w~~ 378 (383)
|++++..+. ++ .|.++|+.+++.. .+.... ......|+|||++|+..+.+ +. +.+++.
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 998877655 34 4555687777643 232221 12234799999987765544 33 444554
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.3e-06 Score=80.28 Aligned_cols=145 Identities=20% Similarity=0.265 Sum_probs=94.1
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCC-CCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
++++.+..+.|++||++.+..++..++.|...|..+.|... ...+++++.|++++.||.+..+...... ......+
T Consensus 172 ~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~---vtt~~pi 248 (1081)
T KOG0309|consen 172 NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT---VTTNFPI 248 (1081)
T ss_pred chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee---ccccCcc
Confidence 35566677889999999999999999999999999988543 2346889999999999987654322111 1111233
Q ss_pred EEEEECCCCc-EEEEEe-CCCcEEE---------EEcC-CCceEEEecccccceeEEEEeC--------CCC--EEEEEe
Q 016769 311 SGTSIRPDSK-IAATAG-WDRRVRI---------YNYR-KGSALAILKYHHATCNAVSFSS--------DCK--LMASAS 368 (383)
Q Consensus 311 ~~~~~~p~~~-~l~s~~-~dg~i~i---------wd~~-~~~~~~~~~~h~~~v~~v~~sp--------d~~--~las~s 368 (383)
.--.+-|-|. +++.-. .+..+.+ |+.. ..+++.++.||...|...-|-- |.+ .|+|=|
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWS 328 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWS 328 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEee
Confidence 3334444332 111111 1112223 3332 2467889999998886554422 333 799999
Q ss_pred CCCcEEEEeCC
Q 016769 369 EDSTVALWELY 379 (383)
Q Consensus 369 ~d~~i~~w~~~ 379 (383)
.|..+++|-+.
T Consensus 329 kD~~lrlWpI~ 339 (1081)
T KOG0309|consen 329 KDQTLRLWPID 339 (1081)
T ss_pred cCCceEeeecc
Confidence 99999999875
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00046 Score=64.47 Aligned_cols=265 Identities=15% Similarity=0.098 Sum_probs=141.5
Q ss_pred CCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeec
Q 016769 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (383)
Q Consensus 29 ~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~ 108 (383)
.+..|+.++.++.|.-+|..+++.+=...... .+. -.|..++..++.++.|+.+..+|.++|+.. +....
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~---~~~---~~p~v~~~~v~v~~~~g~l~ald~~tG~~~----W~~~~ 133 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE---RLS---GGVGADGGLVFVGTEKGEVIALDAEDGKEL----WRAKL 133 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCC---Ccc---cceEEcCCEEEEEcCCCEEEEEECCCCcEe----eeecc
Confidence 35688999999999999988876542211111 111 111123467778888999999999887521 10000
Q ss_pred CceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEec
Q 016769 109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDL 188 (383)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl 188 (383)
. .. .. .... ..+.. +++ +..++.+..||.
T Consensus 134 ~-----------~~---------------------~~------------~~p~-----v~~~~-v~v-~~~~g~l~a~d~ 162 (377)
T TIGR03300 134 S-----------SE---------------------VL------------SPPL-----VANGL-VVV-RTNDGRLTALDA 162 (377)
T ss_pred C-----------ce---------------------ee------------cCCE-----EECCE-EEE-ECCCCeEEEEEc
Confidence 0 00 00 0000 01112 222 344678999999
Q ss_pred CCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCcee-eee---ccc--c
Q 016769 189 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-AMK---VHL--E 262 (383)
Q Consensus 189 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~-~~~---~h~--~ 262 (383)
++++.+-+........ ... .....+ . .. ..++.+..++.+..+|++++...-. ... ... .
T Consensus 163 ~tG~~~W~~~~~~~~~--~~~----~~~sp~--~----~~--~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~ 228 (377)
T TIGR03300 163 ATGERLWTYSRVTPAL--TLR----GSASPV--I----AD--GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELE 228 (377)
T ss_pred CCCceeeEEccCCCce--eec----CCCCCE--E----EC--CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchh
Confidence 9988766554221000 000 000000 0 01 1366777888999999876532110 000 000 0
Q ss_pred C---e-EEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCC
Q 016769 263 P---V-LCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 338 (383)
Q Consensus 263 ~---v-~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~ 338 (383)
. + ....+. +..++.++.++.+..+|.+.. ........ ....... .++..+..++.||.+..+|..+
T Consensus 229 ~~~~~~~~p~~~--~~~vy~~~~~g~l~a~d~~tG--~~~W~~~~----~~~~~p~--~~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 229 RLVDVDGDPVVD--GGQVYAVSYQGRVAALDLRSG--RVLWKRDA----SSYQGPA--VDDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred hhhccCCccEEE--CCEEEEEEcCCEEEEEECCCC--cEEEeecc----CCccCce--EeCCEEEEECCCCeEEEEECCC
Confidence 0 0 011112 245677788999999998643 33222211 1112222 2455677788999999999999
Q ss_pred CceEEEecccccc-eeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 339 GSALAILKYHHAT-CNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 339 ~~~~~~~~~h~~~-v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
++.+......... ..+... .+..|..++.||.|.++|...
T Consensus 299 G~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 299 GSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred CcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 9887654221111 122122 456888899999999998753
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.5e-05 Score=64.82 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=49.9
Q ss_pred CeEEEEECCCCcEEEEEeC--CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 309 GISGTSIRPDSKIAATAGW--DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
++.-++|++|..|+++-.. -..+-+||+...+....+ -...+|....|.|....|+.+.....+++|...
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 3567899999988775432 236788999876655433 245678889999988777776666668888764
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00022 Score=66.11 Aligned_cols=127 Identities=13% Similarity=0.240 Sum_probs=83.8
Q ss_pred CcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEE---cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEEC
Q 016769 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG---ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 316 (383)
Q Consensus 240 g~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~---~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (383)
..+.|+.|+....|+..... .++|...+|.|.++.++.-+ ...++.+|-++.......+.+.+ .....+.+.++
T Consensus 425 ~n~eIfrireKdIpve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~--dk~~~N~vfws 501 (698)
T KOG2314|consen 425 SNLEIFRIREKDIPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL--DKKFANTVFWS 501 (698)
T ss_pred eeEEEEEeeccCCCceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh--cccccceEEEc
Confidence 35788888876666655432 46889999999998765432 24567888776433333222222 22357889999
Q ss_pred CCCcEEEEEe---CCCcEEEEEcCCC--ceEEEecccccceeEEEEeCCCCEEEEEeCCC
Q 016769 317 PDSKIAATAG---WDRRVRIYNYRKG--SALAILKYHHATCNAVSFSSDCKLMASASEDS 371 (383)
Q Consensus 317 p~~~~l~s~~---~dg~i~iwd~~~~--~~~~~~~~h~~~v~~v~~spd~~~las~s~d~ 371 (383)
|-|++++.+. ..|.+..+|+... +.... .-|.. -+-+.|.|.|+|++++|.-.
T Consensus 502 PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-~eh~~-at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 502 PKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-PEHFA-ATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred CCCcEEEEEEecccccceEEEecchhhhhhccC-ccccc-cccceECCCCCEEEEeeehh
Confidence 9999987765 4788999999742 22211 12443 46678999999999987543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.8e-06 Score=74.35 Aligned_cols=144 Identities=15% Similarity=0.180 Sum_probs=95.0
Q ss_pred EEeCCCcEEEEeCCCCCC-ceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccC----CCCeeEEee-------e
Q 016769 235 AGYEDGSILVWDIRNPGI-PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH----STGSCVIKK-------E 302 (383)
Q Consensus 235 sg~~dg~i~~wdl~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~----~~~~~~~~~-------~ 302 (383)
+...++.|.++|-+...+ ....-+.|..||.++.+.+.++..++....|.|.-|..+. +.....+.. .
T Consensus 117 s~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~ 196 (558)
T KOG0882|consen 117 SLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYG 196 (558)
T ss_pred ecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhc
Confidence 345577788888655442 3344467999999999999999888888889999998762 111110100 0
Q ss_pred eecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEe--------------------------------ccccc
Q 016769 303 INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL--------------------------------KYHHA 350 (383)
Q Consensus 303 ~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------------------------~~h~~ 350 (383)
.........++.|+|++..+..-+.|.+|++|+..+++.+..+ ..|..
T Consensus 197 f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~ 276 (558)
T KOG0882|consen 197 FPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGS 276 (558)
T ss_pred ccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcC
Confidence 1112234678999999999999999999999999887542211 11111
Q ss_pred c-eeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 351 T-CNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 351 ~-v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
. -..+.|.-.|++|..|+-=| |++.++.
T Consensus 277 ~~~~~~~fdes~~flly~t~~g-ikvin~~ 305 (558)
T KOG0882|consen 277 TVGTNAVFDESGNFLLYGTILG-IKVINLD 305 (558)
T ss_pred cccceeEEcCCCCEEEeeccee-EEEEEee
Confidence 1 13345777788888887655 6776663
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0016 Score=57.63 Aligned_cols=289 Identities=11% Similarity=0.110 Sum_probs=153.9
Q ss_pred ecCCceeeEEEeCCCCeEEEecCC---CeEEEeeCcc--cccccccccccccceeeeeeecCCCCcceeEecc-cCCeEE
Q 016769 16 GHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVK 89 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~L~sgs~D---~~v~vW~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~ti~ 89 (383)
.+.+..+-|+|+|+++.|+++-.+ |.|--+.... ++....-.....+..-..++.++ +++.|+++. .-+.|.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~--~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE--DGRFVFVANYHSGSVS 114 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC--CCCEEEEEEccCceEE
Confidence 445666788999999999998776 5666666543 33322111111122224556665 356777664 558899
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+..+++...+..+...+. .........+... -.-...+.+++
T Consensus 115 v~p~~~dG~l~~~v~~~~-----------h~g~~p~~rQ~~~---------------------------h~H~a~~tP~~ 156 (346)
T COG2706 115 VYPLQADGSLQPVVQVVK-----------HTGSGPHERQESP---------------------------HVHSANFTPDG 156 (346)
T ss_pred EEEcccCCccccceeeee-----------cCCCCCCccccCC---------------------------ccceeeeCCCC
Confidence 998865322211111100 0000000000000 00011223444
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
+++++..=....|.+++++.+... ...+... .++.+=+- ..|.|+. ....+++--+++|.+|+...
T Consensus 157 -~~l~v~DLG~Dri~~y~~~dg~L~-~~~~~~v-------~~G~GPRH--i~FHpn~---k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 157 -RYLVVPDLGTDRIFLYDLDDGKLT-PADPAEV-------KPGAGPRH--IVFHPNG---KYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred -CEEEEeecCCceEEEEEcccCccc-ccccccc-------CCCCCcce--EEEcCCC---cEEEEEeccCCEEEEEEEcC
Confidence 455555322347899999865532 1111100 11111111 1255542 22345567789999999876
Q ss_pred CCCceeeeecc---------ccCeEEEEEeCCCCceEEEEc-CCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC
Q 016769 250 PGIPLTAMKVH---------LEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 319 (383)
Q Consensus 250 ~~~~~~~~~~h---------~~~v~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 319 (383)
....+..++.+ ......+.++++++.|.++.. ...|.++.++..++...+......+....+.+.|+|++
T Consensus 223 ~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g 302 (346)
T COG2706 223 AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG 302 (346)
T ss_pred CCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC
Confidence 43223333321 123456777999988876653 45788999987777655544444444457889999999
Q ss_pred cEEEEEeC-CCcEEEEEcC--CCceEEEec-ccccceeEEEEe
Q 016769 320 KIAATAGW-DRRVRIYNYR--KGSALAILK-YHHATCNAVSFS 358 (383)
Q Consensus 320 ~~l~s~~~-dg~i~iwd~~--~~~~~~~~~-~h~~~v~~v~~s 358 (383)
++|+++.. ...|.+|.++ +|+.-.... .+.....||.|.
T Consensus 303 ~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 303 RFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 99888875 4478888774 454332222 123334566664
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.5e-06 Score=72.55 Aligned_cols=120 Identities=19% Similarity=0.254 Sum_probs=81.5
Q ss_pred ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeec----CCCCeEEEEECCCC-cEEEEEeCCCcEEE
Q 016769 259 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL----ERPGISGTSIRPDS-KIAATAGWDRRVRI 333 (383)
Q Consensus 259 ~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~----~~~~i~~~~~~p~~-~~l~s~~~dg~i~i 333 (383)
+|.--++++++..+...++++ .|=+|.+|+++......-+.-.... -..-|++..|+|.. +.++=.++-|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 466678899998888777765 6778999999865554433211111 11237788899864 56677788999999
Q ss_pred EEcCCCc-------eE---------EEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 334 YNYRKGS-------AL---------AILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 334 wd~~~~~-------~~---------~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
-|++... .. .-+..--..|..+.|+++|+++.+=.. .+|++||+.+
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence 9997321 10 111222346788999999999976443 5899999943
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00016 Score=75.67 Aligned_cols=147 Identities=8% Similarity=0.107 Sum_probs=98.1
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeec---------------cccCeEEEEEeCCCCceE-EEEcCCcEEEEEccCCCC
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKV---------------HLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTG 295 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~---------------h~~~v~~~~~~~~~~~~~-s~~~d~~i~~wdl~~~~~ 295 (383)
..++.+.++.|++||..+... ..+.+ .......+++++++..++ +-+.++.|++||++....
T Consensus 697 LyVad~~~~~I~v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 697 VYIAMAGQHQIWEYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred EEEEECCCCeEEEEECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 456777889999999865321 11111 112345688999887554 445678999999875331
Q ss_pred eeEEe------eee-ec----------CCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEec------------
Q 016769 296 SCVIK------KEI-NL----------ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK------------ 346 (383)
Q Consensus 296 ~~~~~------~~~-~~----------~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------ 346 (383)
....- ... .. .-....+++++++|+.+++-+.+++|++||..++.......
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL 854 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence 11100 000 00 01124688999999999999999999999998776542221
Q ss_pred -ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 347 -YHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 347 -~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+.-.....++++|+|+.+++-+.++.|++||+..
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 1223567899999999999999999999999854
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=72.68 Aligned_cols=139 Identities=21% Similarity=0.263 Sum_probs=88.0
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEE-----EEeCCCCceEEE-----EcCCcEEEEEccCCCCeeEEee
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL-----SIDESCNGGISG-----GADQKIVLYNLDHSTGSCVIKK 301 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~-----~~~~~~~~~~s~-----~~d~~i~~wdl~~~~~~~~~~~ 301 (383)
.+++++.||.+-+++.++.... .|..++..+ .+...+..+.++ ..-+..+.|+++........
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~~-----~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~-- 175 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLAL-----MSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS-- 175 (319)
T ss_pred ceEecCCCceEEEEechHHHhh-----hhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc--
Confidence 4788999999999987652111 112222111 111111112221 12334566776543211111
Q ss_pred eeecCCCCeEEEEECCCC-cEEEEEeCCCcEEEEEcCCCc-eEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeC
Q 016769 302 EINLERPGISGTSIRPDS-KIAATAGWDRRVRIYNYRKGS-ALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWEL 378 (383)
Q Consensus 302 ~~~~~~~~i~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~ 378 (383)
+.....+.+++-+|.. +.+++|+.||-+.+||.+... +...++.|+.+++-|-|+|... .|+++++||.+--||.
T Consensus 176 --~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 176 --KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred --ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 1122348888888865 578889999999999997753 3356788999999999999654 9999999999999987
Q ss_pred C
Q 016769 379 Y 379 (383)
Q Consensus 379 ~ 379 (383)
.
T Consensus 254 s 254 (319)
T KOG4714|consen 254 S 254 (319)
T ss_pred C
Confidence 5
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5e-05 Score=70.63 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=83.4
Q ss_pred eEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEE
Q 016769 276 GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAV 355 (383)
Q Consensus 276 ~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v 355 (383)
++.|...|.|-+|+...... ..+.....+.+.++++..+.+-..|.+++.|+.+-.|+....+.+..++..+..+.++
T Consensus 73 lvlgt~~g~v~~ys~~~g~i--t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl 150 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEI--TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL 150 (541)
T ss_pred EEeecCCccEEEEEecCCeE--EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence 45677788899998865432 2222334566788888888888899999999999999999999998898888899999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 356 SFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 356 ~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
..+|||++|++|| +.|++||+..
T Consensus 151 ~is~D~~~l~~as--~~ik~~~~~~ 173 (541)
T KOG4547|consen 151 CISPDGKILLTAS--RQIKVLDIET 173 (541)
T ss_pred EEcCCCCEEEecc--ceEEEEEccC
Confidence 9999999999998 6799999864
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0003 Score=67.15 Aligned_cols=128 Identities=14% Similarity=0.063 Sum_probs=74.0
Q ss_pred cEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceE-EEEcCCc--EEEEEccCCCCeeEEeeeeecCCCCeEEEEECC
Q 016769 241 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQK--IVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 317 (383)
Q Consensus 241 ~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~--i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p 317 (383)
.|.+||+.++.. ..+...........|++++..++ +.+.++. |.++|++... .. .+..+.......+|+|
T Consensus 243 ~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--~~---~lt~~~~~~~~p~wSp 315 (448)
T PRK04792 243 EIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA--LT---RITRHRAIDTEPSWHP 315 (448)
T ss_pred EEEEEECCCCCe--EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC--eE---ECccCCCCccceEECC
Confidence 588889876432 12221122334678899998775 4556665 5556665432 11 1222223456678999
Q ss_pred CCcEEEEEeC-CC--cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeC-CCcEEEE
Q 016769 318 DSKIAATAGW-DR--RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE-DSTVALW 376 (383)
Q Consensus 318 ~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~-d~~i~~w 376 (383)
|++.|+..+. ++ .|.++|+.+++... +..........+|+|||++|+..+. ++..+||
T Consensus 316 DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 316 DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEE
Confidence 9998776553 34 46666777666433 2112222345689999998877655 4444554
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00019 Score=68.29 Aligned_cols=132 Identities=12% Similarity=-0.004 Sum_probs=78.7
Q ss_pred CcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceE-EEEcCC--cEEEEEccCCCCeeEEeeeeecCCCCeEEEEEC
Q 016769 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 316 (383)
Q Consensus 240 g~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~--~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (383)
..|.+||+.++.. ..+......+....|+|++..++ +.+.++ .|.+||++..... .+...........|+
T Consensus 223 ~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----~lt~~~~~~~~~~~s 295 (430)
T PRK00178 223 PRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-----RVTNHPAIDTEPFWG 295 (430)
T ss_pred CEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-----EcccCCCCcCCeEEC
Confidence 4688999976432 22222223445678999988765 444455 4677787654321 111122234567899
Q ss_pred CCCcEEEEEeC-CC--cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCC---cEEEEeCC
Q 016769 317 PDSKIAATAGW-DR--RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS---TVALWELY 379 (383)
Q Consensus 317 p~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~---~i~~w~~~ 379 (383)
||++.|+..+. ++ .|+++|+.+++... +..........+|+|||++|+..+.+. .|.+||+.
T Consensus 296 pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~ 363 (430)
T PRK00178 296 KDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ 363 (430)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECC
Confidence 99997766553 33 57777887776432 211122334568999999988776543 46677764
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.2e-05 Score=63.29 Aligned_cols=126 Identities=15% Similarity=0.183 Sum_probs=87.0
Q ss_pred EEEEEeCCCcEEEEeCCCCC-CceeeeeccccCeEEEEEeCCC-CceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCC
Q 016769 232 NVLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 309 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~-~~~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~ 309 (383)
.++++-.+|.+.+-+..... ...+..+.|.-......|+... +.+++||.|+.+..||++.+. .+.+. ..+.|..+
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~-n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWH-NSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeee-cceeeecc
Confidence 36677778888855543221 1123567888888888885443 356899999999999998443 34332 24456678
Q ss_pred eEEEEECC-CCcEEEEEeCCCcEEEEEcCC-CceEEEecccccceeEEEEeCC
Q 016769 310 ISGTSIRP-DSKIAATAGWDRRVRIYNYRK-GSALAILKYHHATCNAVSFSSD 360 (383)
Q Consensus 310 i~~~~~~p-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~v~~spd 360 (383)
|.++.-+| .+.++++|+.|..|++||.+. ++++..- .-.+.|+.+.++|.
T Consensus 213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 213 VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPE 264 (339)
T ss_pred eEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecch
Confidence 88887774 577999999999999999985 4444321 23466788887774
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00052 Score=62.61 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=95.9
Q ss_pred CCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCC-cEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC
Q 016769 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ-KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 317 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~-~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p 317 (383)
.|+..+.+...+. .+ . -+|...|.-..+..+...++.|..|| .+.++|.+... .+.....-+.|.++.++|
T Consensus 340 RGkaFi~~~~~~~-~i-q-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-----~kr~e~~lg~I~av~vs~ 411 (668)
T COG4946 340 RGKAFIMRPWDGY-SI-Q-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-----VKRIEKDLGNIEAVKVSP 411 (668)
T ss_pred cCcEEEECCCCCe-eE-E-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-----EEEeeCCccceEEEEEcC
Confidence 5666665533211 11 1 13444566666655556778898998 78999987532 122333446799999999
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCC----cEEEEeCC
Q 016769 318 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS----TVALWELY 379 (383)
Q Consensus 318 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~----~i~~w~~~ 379 (383)
+|++++.+-....|.+.|+++++....-+...+.|...+|||+++++|.+--+| .|+++|+.
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 999999988888888889999987766666778899999999999999988777 46777763
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-05 Score=69.33 Aligned_cols=120 Identities=18% Similarity=0.285 Sum_probs=79.1
Q ss_pred ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecC-----CCCeEEEEECCCC-cEEEEEeCCCcEE
Q 016769 259 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE-----RPGISGTSIRPDS-KIAATAGWDRRVR 332 (383)
Q Consensus 259 ~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~-----~~~i~~~~~~p~~-~~l~s~~~dg~i~ 332 (383)
.|.--+.++++..+...+++ +.|=+|.+|+++...+..-+.- ++.+ ..-|++..|+|.. ..+.=.++.|+|+
T Consensus 170 aH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVD-iKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 170 AHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVD-IKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred cceeEeeeeeecCchheeee-ccceeeeeccccccCCceEEEe-ccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 35455678888777666555 4677899999987665544322 1211 1237788899864 3444456799999
Q ss_pred EEEcCCCc------eE--EEe--------cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 333 IYNYRKGS------AL--AIL--------KYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 333 iwd~~~~~------~~--~~~--------~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
+-|++... .+ .++ ......|..+.|+|+|+++++-+.- +|+|||+.+.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~ 311 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMA 311 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccc
Confidence 99997321 11 111 2233567888999999999876654 7999998654
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.9e-05 Score=69.16 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=60.9
Q ss_pred CCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 307 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 307 ~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
...+.+++++|+...++.|+.||.|.+||..++-.... .+.-.+..++|||+|-+++.|+.-|.+.+||+.
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 35789999999999999999999999999977643322 345567889999999999999999999999984
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.5e-05 Score=63.05 Aligned_cols=144 Identities=14% Similarity=0.052 Sum_probs=95.3
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEE-eCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
.++.|+..|...+|.+.+....+.....|...|.-+.= ......+..++.|.++++.+++......... ...-..
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h----~~~~~~ 161 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVH----NQNLTQ 161 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceee----ccccce
Confidence 46678899999999988644333333444432211100 0011124567889999999887554322221 111127
Q ss_pred EEEEECCCCcEEEEEeCCCcEEEEEcCCCce-E-E-EecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 311 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSA-L-A-ILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 311 ~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~-~-~-~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
++++++||++++++.+.-..|..|.++.... + . ....-..--.+..|+.....+|+++.||++.|||+.
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR 233 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVR 233 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEec
Confidence 7899999999999999999999999965332 2 2 122223345777899888899999999999999985
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00047 Score=65.31 Aligned_cols=136 Identities=18% Similarity=0.123 Sum_probs=77.3
Q ss_pred CcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEc-CC----cEEEEEccCCC-CeeEEeeeeecCCCCeEEE
Q 016769 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQ----KIVLYNLDHST-GSCVIKKEINLERPGISGT 313 (383)
Q Consensus 240 g~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~----~i~~wdl~~~~-~~~~~~~~~~~~~~~i~~~ 313 (383)
..|.+.++..+.. ..+...........|+|+++.++..+. ++ .+.+|++.... +.... ............
T Consensus 211 ~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p 286 (428)
T PRK01029 211 PKIFLGSLENPAG--KKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNP 286 (428)
T ss_pred ceEEEEECCCCCc--eEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCe
Confidence 3577778765432 222222333445788999987765432 22 33446665321 11111 111111223567
Q ss_pred EECCCCcEEEEEe-CCCcEEEEEc--CC-CceEEEecccccceeEEEEeCCCCEEEEEeCC---CcEEEEeCC
Q 016769 314 SIRPDSKIAATAG-WDRRVRIYNY--RK-GSALAILKYHHATCNAVSFSSDCKLMASASED---STVALWELY 379 (383)
Q Consensus 314 ~~~p~~~~l~s~~-~dg~i~iwd~--~~-~~~~~~~~~h~~~v~~v~~spd~~~las~s~d---~~i~~w~~~ 379 (383)
+|+|||+.|+..+ .+|...+|.+ .. +.....+..+...+....|||||++|+..+.+ ..|.+||+.
T Consensus 287 ~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~ 359 (428)
T PRK01029 287 SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA 359 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 8999999877665 4676666644 32 23334444444566788999999988876654 358888874
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0023 Score=67.27 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=71.6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceee----------ee----------ccccCeEEEEEeCCCCceEEEEcCCcEEEEEcc
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTA----------MK----------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 291 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~----------~~----------~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~ 291 (383)
..++.+.++.|++||+++....+.. .. ........+.+++++..+++-..+++|++||.+
T Consensus 754 LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 754 LYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 4566788899999998764321100 00 001123578888888766777788999999986
Q ss_pred CCCCeeEEeee---------eecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCce
Q 016769 292 HSTGSCVIKKE---------INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 341 (383)
Q Consensus 292 ~~~~~~~~~~~---------~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~ 341 (383)
........... ....-....+++++++|+.+++-+.+++|++||+.+++.
T Consensus 834 tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 834 TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 43211111000 000112467899999999999999999999999988764
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-05 Score=73.35 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=95.1
Q ss_pred EEEEEeCCCcEEEEeCCCCCC------ceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeec
Q 016769 232 NVLAGYEDGSILVWDIRNPGI------PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL 305 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~ 305 (383)
.+++++.|++|++|.++..+- +.-+.+.|..+|..+.|-.+.+.++ +.|+.|.+||--- ++.+.......
T Consensus 749 SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFi--gr~Laq~~dap 824 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFI--GRLLAQMEDAP 824 (1034)
T ss_pred ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccCcceeecccc--cchhHhhhcCc
Confidence 478999999999999875431 3445678999999999977666544 5699999998421 11111001001
Q ss_pred CCCCeEEEEECC--CCcEEEEE-eCCCcEEEEEcCCCceEEEe-----cccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 306 ERPGISGTSIRP--DSKIAATA-GWDRRVRIYNYRKGSALAIL-----KYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 306 ~~~~i~~~~~~p--~~~~l~s~-~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
..+....+..-| +...+++| +...+|+++|.+..+-...+ .+....+.+++..|.|++||.|=.+|+|-+-|
T Consensus 825 k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LD 904 (1034)
T KOG4190|consen 825 KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILD 904 (1034)
T ss_pred ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEe
Confidence 111122222222 33455555 67899999999887643322 23345678899999999999999999998887
Q ss_pred CC
Q 016769 378 LY 379 (383)
Q Consensus 378 ~~ 379 (383)
..
T Consensus 905 aR 906 (1034)
T KOG4190|consen 905 AR 906 (1034)
T ss_pred cC
Confidence 64
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.6e-06 Score=72.23 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=62.5
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEee
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd 92 (383)
-..||-.-+++|+++||.+.|+|+-.|..|||=......-+.... .++.+.|..++..+ +..|+|+|.|+|+++||
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-lGH~eFVS~isl~~---~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-LGHKEFVSTISLTD---NYLLLSGSGDKTLRLWD 221 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc-cccHhheeeeeecc---CceeeecCCCCcEEEEe
Confidence 356999999999999999999999999999997765433332221 12223455555554 34579999999999999
Q ss_pred cCCCCCCC
Q 016769 93 IENGGLSS 100 (383)
Q Consensus 93 ~~~~~~~~ 100 (383)
+.+|.++.
T Consensus 222 ~~sgk~L~ 229 (390)
T KOG3914|consen 222 ITSGKLLD 229 (390)
T ss_pred cccCCccc
Confidence 99987543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0014 Score=61.03 Aligned_cols=114 Identities=16% Similarity=0.258 Sum_probs=76.6
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcC---CcEEEEEccCCCCeeEEeeeeecCCCC
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTGSCVIKKEINLERPG 309 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d---~~i~~wdl~~~~~~~~~~~~~~~~~~~ 309 (383)
++-|..=.++-|||++- .++ +....++=+++-|+|.+..++.+|.+ |.+.+||..... .+ .+.....
T Consensus 287 VvyGfMPAkvtifnlr~--~~v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K--~i----~~~~a~~ 356 (566)
T KOG2315|consen 287 VVYGFMPAKVTIFNLRG--KPV--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK--LI----AKFKAAN 356 (566)
T ss_pred EEEecccceEEEEcCCC--CEe--EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh--hc----cccccCC
Confidence 55677788899999874 223 33345677789999999988877764 779999986532 11 1222334
Q ss_pred eEEEEECCCCcEEEEEeC------CCcEEEEEcCCCceEEEeccccc-ceeEEEEeC
Q 016769 310 ISGTSIRPDSKIAATAGW------DRRVRIYNYRKGSALAILKYHHA-TCNAVSFSS 359 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~h~~-~v~~v~~sp 359 (383)
.+-+.|+|||++|++++. |..++||+. +|+.+.. .+-. ..+.+.|-|
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~--~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHE--KMFKSELLQVEWRP 410 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeeh--hhhhHhHhheeeee
Confidence 567889999999988875 678899998 4554421 1122 355666665
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.6e-06 Score=47.87 Aligned_cols=38 Identities=29% Similarity=0.657 Sum_probs=34.9
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEee
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~ 46 (383)
++...+.+|...|++++|++++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45678889999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00084 Score=63.30 Aligned_cols=186 Identities=11% Similarity=-0.005 Sum_probs=96.8
Q ss_pred cccCCCCCceee-eccC-CcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEe--C
Q 016769 163 DDVPAEGPKYMA-VAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--E 238 (383)
Q Consensus 163 ~~~~~~~~~~~~-~~g~-~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~--~ 238 (383)
...+++|++.++ ++-. ....|.++|+.+++...-.... +.... ..+.|+. ...+++.+ .
T Consensus 193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-------------g~~~~-~~~SPDG---~~la~~~~~~g 255 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-------------GMLVV-SDVSKDG---SKLLLTMAPKG 255 (419)
T ss_pred EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC-------------CcEEe-eEECCCC---CEEEEEEccCC
Confidence 345677765333 3333 2457999999887643222111 11111 1233332 22233332 3
Q ss_pred CCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEE-cCC--cEEEEEccCCCCeeEEeeeeecCCCCeEEEEE
Q 016769 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSI 315 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~--~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (383)
+..|.++|+..+. ...+..+........|+|++..++-.+ ..+ .|.+.|++..+.. . +.... .....+
T Consensus 256 ~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-r----lt~~g--~~~~~~ 326 (419)
T PRK04043 256 QPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-Q----VVFHG--KNNSSV 326 (419)
T ss_pred CcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-e----CccCC--CcCceE
Confidence 4567777876532 233333322223456899988765443 344 3555666543211 1 11111 122489
Q ss_pred CCCCcEEEEEeCC---------CcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCC-CcEEEE
Q 016769 316 RPDSKIAATAGWD---------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED-STVALW 376 (383)
Q Consensus 316 ~p~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d-~~i~~w 376 (383)
+|||++++-.+.. ..|.+.|++++... .+.... ......|+|||++++..+.+ +.-.||
T Consensus 327 SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~ 395 (419)
T PRK04043 327 STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALG 395 (419)
T ss_pred CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEE
Confidence 9999988777654 26788888777643 333222 23357899999977665543 333344
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0001 Score=64.44 Aligned_cols=124 Identities=22% Similarity=0.272 Sum_probs=84.4
Q ss_pred EEEEEeCCCcEEEEeCCCC----CCceeeeeccccCeEEEEEeC-CCCceEEEEcCCcEEEEEccCCCCee-EEeeeeec
Q 016769 232 NVLAGYEDGSILVWDIRNP----GIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSC-VIKKEINL 305 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~----~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~i~~wdl~~~~~~~-~~~~~~~~ 305 (383)
.+..|..+|.|...|+|.. +.+.. .-.|-..|+++..-. +...+++.+-+|.|++||++.-.+.. .... ..
T Consensus 266 Lv~~GcRngeI~~iDLR~rnqG~~~~a~-rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY--eG 342 (425)
T KOG2695|consen 266 LVFNGCRNGEIFVIDLRCRNQGNGWCAQ-RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQY--EG 342 (425)
T ss_pred eeEecccCCcEEEEEeeecccCCCcceE-EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeee--ec
Confidence 4677999999999999864 22222 235777888887744 66778999999999999997533211 1111 11
Q ss_pred CCC--CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecc----cccceeEEEEe
Q 016769 306 ERP--GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY----HHATCNAVSFS 358 (383)
Q Consensus 306 ~~~--~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~v~~s 358 (383)
|.+ .-.-+-+++....+++++.|-.-|||.++++..+.++.. -+..+.+++|.
T Consensus 343 HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 343 HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 211 112233567778999999999999999999998876642 23356677764
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.6e-05 Score=44.31 Aligned_cols=38 Identities=45% Similarity=0.693 Sum_probs=33.8
Q ss_pred ceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 340 SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 340 ~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
+....+..|...|.++.|+|+++++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44566778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00071 Score=59.27 Aligned_cols=145 Identities=14% Similarity=0.281 Sum_probs=93.9
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccc--cCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHL--EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
+++.+.|.++|+|--+...+.-..+ .|+ .++.++++......++.|=..+++.-+.+...=.+....+....+...+
T Consensus 39 v~~~s~drtvrv~lkrds~q~wpsI-~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v 117 (404)
T KOG1409|consen 39 VISVSEDRTVRVWLKRDSGQYWPSI-YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARV 117 (404)
T ss_pred eEEccccceeeeEEeccccccCchh-hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcce
Confidence 7788999999999654433211112 233 4677888877766666666667776665432111111122223344556
Q ss_pred EEEEECCCCcEEEEEeCCCcEEEEEc------------------------------------------CCCceEEEeccc
Q 016769 311 SGTSIRPDSKIAATAGWDRRVRIYNY------------------------------------------RKGSALAILKYH 348 (383)
Q Consensus 311 ~~~~~~p~~~~l~s~~~dg~i~iwd~------------------------------------------~~~~~~~~~~~h 348 (383)
..+.|+-....+++.+.|+.+. |.. .....+.++.+|
T Consensus 118 ~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h 196 (404)
T KOG1409|consen 118 SAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH 196 (404)
T ss_pred eeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc
Confidence 6666665556666666665443 322 112346688899
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 349 HATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 349 ~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
...+.+++|-|..+.|.+|..|..|.+||+.
T Consensus 197 ~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 197 TGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred ccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 9999999999999999999999999999985
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0044 Score=54.86 Aligned_cols=142 Identities=15% Similarity=0.238 Sum_probs=98.2
Q ss_pred CCcEEEEeCCCCCCcee--eeeccccCeEEEEEeCCCCceEEEEc---CCcEEEEEccCCCCeeEEeeeeecCCCCeEEE
Q 016769 239 DGSILVWDIRNPGIPLT--AMKVHLEPVLCLSIDESCNGGISGGA---DQKIVLYNLDHSTGSCVIKKEINLERPGISGT 313 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~s~~~---d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~ 313 (383)
++-|.+|++.+..-.+. ..-.+.+...-+.++++.+.|+++.. ++.|.-|.++..++...+...........+-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 57799999874322121 12235567788999999888887754 57788899887666665554444444455889
Q ss_pred EECCCCcEEEEEeC-CCcEEEEEcCC-CceEE--Eecccccc----------eeEEEEeCCCCEEEEEeCC-CcEEEEeC
Q 016769 314 SIRPDSKIAATAGW-DRRVRIYNYRK-GSALA--ILKYHHAT----------CNAVSFSSDCKLMASASED-STVALWEL 378 (383)
Q Consensus 314 ~~~p~~~~l~s~~~-dg~i~iwd~~~-~~~~~--~~~~h~~~----------v~~v~~spd~~~las~s~d-~~i~~w~~ 378 (383)
++++++++++++.. -|.|.++-+.. |.... ..-.|.+. +..+.|.||+++|++..-. -.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999888874 68999999854 43221 22235554 7888899999988875432 25888888
Q ss_pred CC
Q 016769 379 YP 380 (383)
Q Consensus 379 ~~ 380 (383)
.+
T Consensus 175 ~d 176 (346)
T COG2706 175 DD 176 (346)
T ss_pred cc
Confidence 64
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0055 Score=52.67 Aligned_cols=146 Identities=15% Similarity=0.149 Sum_probs=87.0
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeec-------cccCeEEEEEeCCC------CceEEEEcCCcEEEEEccCCCCe--
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKV-------HLEPVLCLSIDESC------NGGISGGADQKIVLYNLDHSTGS-- 296 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~-------h~~~v~~~~~~~~~------~~~~s~~~d~~i~~wdl~~~~~~-- 296 (383)
.++.+...|+|++||+... . +..+.. -..+|..|.|-+.. ..++.-..+|.++-|-+...+..
T Consensus 57 lLa~a~S~G~i~vfdl~g~-~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y 134 (282)
T PF15492_consen 57 LLAYAESTGTIRVFDLMGS-E-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGY 134 (282)
T ss_pred EEEEEcCCCeEEEEecccc-e-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcc
Confidence 4666788999999998632 1 111111 12356666662211 13566677777776655322111
Q ss_pred -eEEeeee-ecCCCCeEEEEECCCCcEEEEEeCCC-----------cEEEEEcCCCceEE--------------------
Q 016769 297 -CVIKKEI-NLERPGISGTSIRPDSKIAATAGWDR-----------RVRIYNYRKGSALA-------------------- 343 (383)
Q Consensus 297 -~~~~~~~-~~~~~~i~~~~~~p~~~~l~s~~~dg-----------~i~iwd~~~~~~~~-------------------- 343 (383)
....... .....+|+++.++|..+.|+.||... =+.-|.+-.+.+..
T Consensus 135 ~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~ 214 (282)
T PF15492_consen 135 QENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLL 214 (282)
T ss_pred eeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccccccccee
Confidence 1111111 11235899999999999877776421 14456553322110
Q ss_pred ---E---e---cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 344 ---I---L---KYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 344 ---~---~---~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
. + ...+..|..+.+||||+.||+...+|.|.+|++.
T Consensus 215 ~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 215 RIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred eccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 0 0 1135578899999999999999999999999984
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00064 Score=66.77 Aligned_cols=138 Identities=16% Similarity=0.240 Sum_probs=96.3
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEc---------CCcEEEEEccCCCCeeEEeee
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA---------DQKIVLYNLDHSTGSCVIKKE 302 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~---------d~~i~~wdl~~~~~~~~~~~~ 302 (383)
.+..|...|+|.+-|.++ ..+++++..|.+.+..+.+ .++.+++||. |.-|++|||+..... ..
T Consensus 189 ~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral----~P 261 (1118)
T KOG1275|consen 189 NLFCGDTRGTVFLRDPNS-FETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL----SP 261 (1118)
T ss_pred EEEeecccceEEeecCCc-Cceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhcc----CC
Confidence 578899999999999987 4568899999998876655 4677888875 556789998753211 11
Q ss_pred eecCCCCeEEEEECCC-CcEEEEEeCCCcEEEEEcCC-Cce---EEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 303 INLERPGISGTSIRPD-SKIAATAGWDRRVRIYNYRK-GSA---LAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 303 ~~~~~~~i~~~~~~p~-~~~l~s~~~dg~i~iwd~~~-~~~---~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
+..+ .+..=+.|+|. ...++.++..|...+-|..+ +++ ...+..-...+....+|+.|..||.|..+|.|.+|.
T Consensus 262 I~~~-~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 262 IQFP-YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccc-cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 1111 12233456665 34678888899999888422 121 222222344588899999999999999999999996
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.7e-05 Score=71.71 Aligned_cols=143 Identities=14% Similarity=0.249 Sum_probs=99.9
Q ss_pred EEEEeCCCcEEEEeCCCCCC-ce-eeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCC
Q 016769 233 VLAGYEDGSILVWDIRNPGI-PL-TAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 309 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~-~~-~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~ 309 (383)
+++-+ ...-.+|++..+.. .+ -.+.+|...|..+.|.+... .+++++.|-.+..||+......... .......
T Consensus 85 iVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys---~~~w~s~ 160 (1081)
T KOG0309|consen 85 IVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS---TSSWRSA 160 (1081)
T ss_pred EEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee---eeccccc
Confidence 44433 34456898865432 22 23457889999999977654 5789999999999999865433221 1222344
Q ss_pred eEEEEECCCCcEEEEEeCCCcEEEEEcCCC-ceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKG-SALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
...+.++--...+.+.+..+.|++||++.+ .++..+++|...|+.++|..-.. .+.+.+.|++|++||..
T Consensus 161 asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 161 ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred CceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 566777643333444567788999999876 45678889999999999975432 57889999999999985
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=7.8e-05 Score=61.74 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=89.8
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 312 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~ 312 (383)
+..-+.||.|+=++++......+....|.+- +.+-.....++.|+.++.|.+|..+........ .. .........
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~-~~-s~~e~i~~~ 107 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDR-VC-SGEESIDLG 107 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHh-hh-cccccceec
Confidence 4455678888888776533222222223222 222223345788999999999987632211110 00 001111222
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccc-cceeEEEEeCCCCEEEEE--eCCCcEEEEeCC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH-ATCNAVSFSSDCKLMASA--SEDSTVALWELY 379 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~spd~~~las~--s~d~~i~~w~~~ 379 (383)
+....++.+..++++|+.||.|++...+.+....+|. .++.....+.-++.++.+ |.|..++.|++.
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 2233455678889999999999999999888777787 667666777777888888 999999999985
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0078 Score=58.48 Aligned_cols=87 Identities=13% Similarity=0.212 Sum_probs=56.2
Q ss_pred CCeeeeeecCCceeeEEEeCCC------------CeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCc
Q 016769 9 DPVAVLRGHRASVTDVCFHQTK------------PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL 76 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~------------~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (383)
+.+++++-|...|+.|.+.|-. -+||++--.|+|.+||+..+-....+..+ ...+.-+++.+..+.
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~--~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHS--NDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCC--CcchhheeeeeccCc
Confidence 4567788999999999987531 24666666699999998654333222222 233444444443222
Q ss_pred --ceeEecccCCeEEEeecCCCC
Q 016769 77 --NKVISQGRDGTVKCWDIENGG 97 (383)
Q Consensus 77 --~~l~s~~~D~ti~~Wd~~~~~ 97 (383)
..|+......++-+||-.+|+
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~ 146 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGE 146 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCc
Confidence 245666777899999988885
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0014 Score=59.88 Aligned_cols=125 Identities=13% Similarity=0.191 Sum_probs=89.1
Q ss_pred EEEEeCCC-cEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 233 VLAGYEDG-SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 233 ~~sg~~dg-~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
++.|..|| .+-++|.+... ...+....+.|..+..+++++.++.+.....+-+.|++..+.+.. -+.+.+-|.
T Consensus 374 ~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i----dkS~~~lIt 447 (668)
T COG4946 374 DVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI----DKSEYGLIT 447 (668)
T ss_pred eEEeccCCceEEEEecCCce--EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe----cccccceeE
Confidence 67788888 89999987632 455666678899999999999878776666677777776543221 123345699
Q ss_pred EEEECCCCcEEEEEeCC----CcEEEEEcCCCceEEEe--cccccceeEEEEeCCCCEEEE
Q 016769 312 GTSIRPDSKIAATAGWD----RRVRIYNYRKGSALAIL--KYHHATCNAVSFSSDCKLMAS 366 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~d----g~i~iwd~~~~~~~~~~--~~h~~~v~~v~~spd~~~las 366 (383)
.+++||+++++|=+--+ ..|+++|+..++.+... .+|. .+=+|.||+++|-.
T Consensus 448 df~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~D---fsPaFD~d~ryLYf 505 (668)
T COG4946 448 DFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYD---FSPAFDPDGRYLYF 505 (668)
T ss_pred EEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccc---cCcccCCCCcEEEE
Confidence 99999999998865544 47999999888765432 2233 33478899997643
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0092 Score=51.32 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=38.3
Q ss_pred CCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEeccccc
Q 016769 306 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA 350 (383)
Q Consensus 306 ~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~ 350 (383)
....|..+.++|||+.||+...+|+|.+|++...++...+.-++.
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 446789999999999999999999999999998887776654443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.3e-05 Score=69.53 Aligned_cols=122 Identities=19% Similarity=0.295 Sum_probs=83.0
Q ss_pred eeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCC-----CCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC
Q 016769 254 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS-----TGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 328 (383)
Q Consensus 254 ~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~-----~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d 328 (383)
+..+.+|++.|+.+.--...+.+++++.|+++++|.++.. +..|.+ ....|...|..+-|-.+-++++++ |
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQf--TY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQF--TYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeee--EhhhccCcccceeeeeccceeeec--c
Confidence 4556789998888766444567899999999999999743 122332 334456678899998898998854 9
Q ss_pred CcEEEEEcCCCceEEEec--ccccceeEEEEeC--CCCEEEEE-eCCCcEEEEeCC
Q 016769 329 RRVRIYNYRKGSALAILK--YHHATCNAVSFSS--DCKLMASA-SEDSTVALWELY 379 (383)
Q Consensus 329 g~i~iwd~~~~~~~~~~~--~h~~~v~~v~~sp--d~~~las~-s~d~~i~~w~~~ 379 (383)
+-|++||.-.++.+..+. ..++.+.-+..-| |..+++.| +...+|+++|..
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR 859 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR 859 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecc
Confidence 999999997777665332 1122233333333 44455444 889999998864
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.031 Score=51.80 Aligned_cols=88 Identities=13% Similarity=0.152 Sum_probs=53.4
Q ss_pred CcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEE--EeCCCcEEEEEcCCCceEEEecccccceeEEEEeCC
Q 016769 283 QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT--AGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSD 360 (383)
Q Consensus 283 ~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd 360 (383)
..+.|+++...+.+... ...+.|..++|.|.++.++. |-.+-++.++|++..-... .-+.+=+.+-|||.
T Consensus 255 snLyl~~~~e~~i~V~~-----~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~---~Pe~~rNT~~fsp~ 326 (561)
T COG5354 255 SNLYLLRITERSIPVEK-----DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFY---FPEQKRNTIFFSPH 326 (561)
T ss_pred ceEEEEeecccccceec-----cccccceeeeecccCCceeEEecccccceeecccccceEEe---cCCcccccccccCc
Confidence 44667776644332211 12357889999998875444 4578899999997652222 22333455567787
Q ss_pred CCEEEEEeCC---CcEEEEeC
Q 016769 361 CKLMASASED---STVALWEL 378 (383)
Q Consensus 361 ~~~las~s~d---~~i~~w~~ 378 (383)
+++++.++-| |.|.+||.
T Consensus 327 ~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 327 ERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred ccEEEEecCCccccceEEecc
Confidence 7777766655 35666654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.016 Score=50.53 Aligned_cols=140 Identities=13% Similarity=0.090 Sum_probs=84.7
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeec-CCCCeE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-ERPGIS 311 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~-~~~~i~ 311 (383)
+++....+.|..||..+.. ...+... ....+.++.....++.+..+ .+.++|+............... .....+
T Consensus 15 ~~~D~~~~~i~~~~~~~~~--~~~~~~~--~~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~N 89 (246)
T PF08450_consen 15 YWVDIPGGRIYRVDPDTGE--VEVIDLP--GPNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPN 89 (246)
T ss_dssp EEEETTTTEEEEEETTTTE--EEEEESS--SEEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEE
T ss_pred EEEEcCCCEEEEEECCCCe--EEEEecC--CCceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCc
Confidence 4455567888889887632 2222222 25667777333455666554 4566687654322222221111 334688
Q ss_pred EEEECCCCcEEEEEeCC--------CcEEEEEcCCCceEEEecccccceeEEEEeCCCCEE-EEEeCCCcEEEEeCC
Q 016769 312 GTSIRPDSKIAATAGWD--------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASEDSTVALWELY 379 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~l-as~s~d~~i~~w~~~ 379 (383)
.+++.|+|++.++.... |.|..++.. ++.. .+.......+.++|+||++.| ++-+..+.|..+++.
T Consensus 90 D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 90 DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred eEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE-EEecCcccccceEECCcchheeecccccceeEEEecc
Confidence 99999999977766644 457777776 4433 333345567999999999955 677888888888875
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.011 Score=56.91 Aligned_cols=80 Identities=21% Similarity=0.224 Sum_probs=51.5
Q ss_pred eeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEe
Q 016769 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~W 91 (383)
++|+||.+.|.-+.++.+.+.|-|...+|.|.||-+..+.=...........-+.++++.. +|.++...-.||.|-+=
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVG 142 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEE
Confidence 6899999999999999999999999999999999876553111100000112234444443 45555555555555444
Q ss_pred ec
Q 016769 92 DI 93 (383)
Q Consensus 92 d~ 93 (383)
.+
T Consensus 143 sv 144 (1189)
T KOG2041|consen 143 SV 144 (1189)
T ss_pred ee
Confidence 33
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0005 Score=65.76 Aligned_cols=140 Identities=16% Similarity=0.135 Sum_probs=99.9
Q ss_pred EEEEEeCCCcEEEEeCCCCCC--------------ceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCee
Q 016769 232 NVLAGYEDGSILVWDIRNPGI--------------PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC 297 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~ 297 (383)
.++.|+.||.+++-.+.+... .-.++.+|.+.|..+.|....+.+-+...+|.|.+|=+=..+.
T Consensus 28 yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW-- 105 (1189)
T KOG2041|consen 28 YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSW-- 105 (1189)
T ss_pred eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccH--
Confidence 467789999999998865311 1135678999999999988888888888999999997643221
Q ss_pred EEeeee--ecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEE--EecccccceeEEEEeCCCCEEEEEeCCCcE
Q 016769 298 VIKKEI--NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA--ILKYHHATCNAVSFSSDCKLMASASEDSTV 373 (383)
Q Consensus 298 ~~~~~~--~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~v~~spd~~~las~s~d~~i 373 (383)
..++ ....+-|.+++++.||..+...-.||.|.+=.++ |..+. .+++. ....+.||||.+.+..+-.+|.+
T Consensus 106 --~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~ 180 (1189)
T KOG2041|consen 106 --CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGET 180 (1189)
T ss_pred --HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchh--eccceeecccHHHHHhhhcCCcE
Confidence 1111 1223457889999999988888889988765553 33332 22221 12366799999988888899999
Q ss_pred EEEeC
Q 016769 374 ALWEL 378 (383)
Q Consensus 374 ~~w~~ 378 (383)
+++|.
T Consensus 181 hlydn 185 (1189)
T KOG2041|consen 181 HLYDN 185 (1189)
T ss_pred EEecc
Confidence 99986
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.068 Score=46.07 Aligned_cols=177 Identities=17% Similarity=0.099 Sum_probs=99.3
Q ss_pred CCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeee
Q 016769 178 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 257 (383)
Q Consensus 178 ~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~ 257 (383)
+.++.+..||..+++.+.+....... .....+ .. ..++.+..++.|..+|++++...-...
T Consensus 43 ~~~~~l~~~d~~tG~~~W~~~~~~~~----------~~~~~~-------~~--~~v~v~~~~~~l~~~d~~tG~~~W~~~ 103 (238)
T PF13360_consen 43 SGDGNLYALDAKTGKVLWRFDLPGPI----------SGAPVV-------DG--GRVYVGTSDGSLYALDAKTGKVLWSIY 103 (238)
T ss_dssp ETTSEEEEEETTTSEEEEEEECSSCG----------GSGEEE-------ET--TEEEEEETTSEEEEEETTTSCEEEEEE
T ss_pred cCCCEEEEEECCCCCEEEEeeccccc----------cceeee-------cc--cccccccceeeeEecccCCcceeeeec
Confidence 45679999999999977665421100 000000 01 135666788899999988754322211
Q ss_pred eccc---cCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC--------CeEEEEECCCCcEEEEEe
Q 016769 258 KVHL---EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP--------GISGTSIRPDSKIAATAG 326 (383)
Q Consensus 258 ~~h~---~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~--------~i~~~~~~p~~~~l~s~~ 326 (383)
.... ...........+..++.+..++.+..+|+++ +............. .+..-.+..++ .+..++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 180 (238)
T PF13360_consen 104 LTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKT--GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS 180 (238)
T ss_dssp E-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTT--TEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC
T ss_pred cccccccccccccCceEecCEEEEEeccCcEEEEecCC--CcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEc
Confidence 1111 1111122222255677787899999998764 44444333321111 11222333345 566667
Q ss_pred CCCc-EEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 327 WDRR-VRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 327 ~dg~-i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
.++. +.+ |+.+++.+.... ...+.. ...+++..|+.++.|+.|..||+..
T Consensus 181 ~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 181 GDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp CTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred CCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 7775 555 999999775332 223332 1457788888888999999999864
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.12 Score=48.55 Aligned_cols=135 Identities=12% Similarity=0.024 Sum_probs=77.6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
.++.++.+|.+..+|++++...- +........+... +..++.++.++.+...|..+. ......... ......
T Consensus 258 ~vy~~~~~g~l~ald~~tG~~~W---~~~~~~~~~~~~~--~~~vy~~~~~g~l~ald~~tG--~~~W~~~~~-~~~~~~ 329 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQIVW---KREYGSVNDFAVD--GGRIYLVDQNDRVYALDTRGG--VELWSQSDL-LHRLLT 329 (394)
T ss_pred EEEEEEcCCeEEEEECCCCCEEE---eecCCCccCcEEE--CCEEEEEcCCCeEEEEECCCC--cEEEccccc-CCCccc
Confidence 36667788999999988754211 1111111112222 345667778888888887543 222221110 011112
Q ss_pred EEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeE-EEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 312 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNA-VSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-v~~spd~~~las~s~d~~i~~w~~ 378 (383)
+..+ .+.+++.++.||.++.+|..+|+.+...+-....+.+ -.+ .+..|..++.||.+..+++
T Consensus 330 sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 330 APVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 2222 2346777899999999999999988766533222322 122 2447788899999888765
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.27 Score=51.29 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=77.5
Q ss_pred ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCC-CCeEEEEECCCC-cEEEEEeCCCcEEEEEc--
Q 016769 261 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER-PGISGTSIRPDS-KIAATAGWDRRVRIYNY-- 336 (383)
Q Consensus 261 ~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~-~~i~~~~~~p~~-~~l~s~~~dg~i~iwd~-- 336 (383)
...|..+.|++++..|+.--.| .|.+|..... ...++.++.... ..+..+.|+|.. ..+...+.+|.+..++.
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NY--HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~ 380 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLED-RVQLWTRSNY--HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW 380 (928)
T ss_pred CceeeEEEECCCCCEEEEEecC-CceEEEeeCC--EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence 4578999999998887775544 4999987644 445555555432 234558898854 34666666677766544
Q ss_pred --CC----------------CceE----------------EEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 337 --RK----------------GSAL----------------AILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 337 --~~----------------~~~~----------------~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.. |..+ ..+ .-..+|.+++|++++..+|.-..||.|.+|.+.
T Consensus 381 ~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 381 DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 11 1111 011 124689999999999889999999999999853
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0061 Score=59.38 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=89.7
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
.++-|+-+|.|.+.+... .+ .....|... +..|.++++|+.||.+.+-.+.+....+... . .-.+.
T Consensus 51 ~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f---~rpik 116 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD--F---KRPIK 116 (846)
T ss_pred eeeeccccceEEEEecCC--cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe--c---CCcce
Confidence 356688899999998643 32 333444433 6678889999999999998776544322221 1 23578
Q ss_pred EEEECCC-----CcEEEEEeCCCcEEEEEcCC-CceE-EEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 312 GTSIRPD-----SKIAATAGWDRRVRIYNYRK-GSAL-AILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 312 ~~~~~p~-----~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+++++|+ .+.+++||.-| +.++.-.= ++.. ..+..-+++|.++.|. |.++|-++.+| |++||..
T Consensus 117 sial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~ 187 (846)
T KOG2066|consen 117 SIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTP 187 (846)
T ss_pred eEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEecc
Confidence 9999998 46789999888 77765421 1111 1344567899999996 67899998887 8999874
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00081 Score=60.13 Aligned_cols=76 Identities=11% Similarity=0.215 Sum_probs=65.3
Q ss_pred CCCCeEEEEECCCCc-EEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCCCCC
Q 016769 306 ERPGISGTSIRPDSK-IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYPPH 382 (383)
Q Consensus 306 ~~~~i~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~~~~ 382 (383)
+..-|.+++|+|..+ .+..++.+.+|+|.|+++...+..+..| +++++.+|.-|.. ++-.|-.+|.|.+||+.-|+
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 445688999999877 7888999999999999999988888777 7899999998877 55667789999999998665
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.01 Score=59.46 Aligned_cols=139 Identities=15% Similarity=0.161 Sum_probs=89.5
Q ss_pred EeCCCcEEEEeCCCCCCceeeeecccc-CeEEEEEeCCC-----CceEEEEcCCcEEEEEccCCCCeeEEeeeee-cCCC
Q 016769 236 GYEDGSILVWDIRNPGIPLTAMKVHLE-PVLCLSIDESC-----NGGISGGADQKIVLYNLDHSTGSCVIKKEIN-LERP 308 (383)
Q Consensus 236 g~~dg~i~~wdl~~~~~~~~~~~~h~~-~v~~~~~~~~~-----~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~-~~~~ 308 (383)
......|.--||+.+. .+...+.|.. +|..+..+... ...+.|-.++.+..||.+....+........ ....
T Consensus 500 ~~~~~~ly~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCCceEEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 3456677788888754 3555555543 35555553321 2346777889999999875442222111111 1224
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEE-EecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA-ILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
..+|++-+.+| +||.|+.+|.||+||- .++..+ .+.+-..+|..|..+.||++++... +..+-|.+.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 57788877776 7899999999999995 344343 3446678999999999999766554 345666654
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0022 Score=60.44 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=58.6
Q ss_pred cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCC
Q 016769 260 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 338 (383)
Q Consensus 260 h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~ 338 (383)
....+.+.+++++...++.|+.||+|.+||......... + ..-..+.+++||+|.++++|+..|.+.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--k----a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--K----AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--e----ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 345788999999999999999999999999865432211 1 112467899999999999999999999999953
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.027 Score=56.46 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=88.0
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCC---ceEEEEEeCCCcEEEEeC
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG---FVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~sg~~dg~i~~wdl 247 (383)
..++....+.+.++--||++++.+..-.-+. ... +..+.|..... ....+.|-.+..+..||.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~---------~~~-----v~~~~p~~K~aqlt~e~tflGls~n~lfriDp 559 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHD---------DIP-----VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDP 559 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCC---------Ccc-----eeEecccccccccCCCceEEEECCCceEEecc
Confidence 3445544455678888888888665432111 000 11222221000 113567888999999999
Q ss_pred CCCCCceeeeecc----ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEE
Q 016769 248 RNPGIPLTAMKVH----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 323 (383)
Q Consensus 248 ~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 323 (383)
|-.+..+..-+.| .....|++-..+| .++.|+.+|.||+||-. +.. .+..+..-...|.++.++.||++|+
T Consensus 560 R~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~---g~~-AKT~lp~lG~pI~~iDvt~DGkwil 634 (794)
T PF08553_consen 560 RLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL---GKR-AKTALPGLGDPIIGIDVTADGKWIL 634 (794)
T ss_pred CCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc---chh-hhhcCCCCCCCeeEEEecCCCcEEE
Confidence 8754322221222 2245666666555 57999999999999832 211 2223344457899999999999988
Q ss_pred EEeCCCcEEEEEc
Q 016769 324 TAGWDRRVRIYNY 336 (383)
Q Consensus 324 s~~~dg~i~iwd~ 336 (383)
+++ +..+.+++.
T Consensus 635 aTc-~tyLlLi~t 646 (794)
T PF08553_consen 635 ATC-KTYLLLIDT 646 (794)
T ss_pred Eee-cceEEEEEE
Confidence 766 667778876
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0036 Score=52.95 Aligned_cols=60 Identities=20% Similarity=0.367 Sum_probs=51.5
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEcc
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLD 291 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~ 291 (383)
.++.|++||.+-+||.++...|...++.|..++.-+-|+|+.. .|++++.||.+--||-.
T Consensus 194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 4677999999999999987777788899999999999988654 68999999998888753
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.2 Score=45.61 Aligned_cols=133 Identities=18% Similarity=0.247 Sum_probs=83.2
Q ss_pred CcEEEEeCCCC-C--Cceeee--eccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEE
Q 016769 240 GSILVWDIRNP-G--IPLTAM--KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 314 (383)
Q Consensus 240 g~i~~wdl~~~-~--~~~~~~--~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~ 314 (383)
|.|.++++.+. . ..+..+ ....++|.++..-. .. +..+.++.|.+|+++... ........... ..+.++.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~--~~-lv~~~g~~l~v~~l~~~~-~l~~~~~~~~~-~~i~sl~ 136 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN--GR-LVVAVGNKLYVYDLDNSK-TLLKKAFYDSP-FYITSLS 136 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET--TE-EEEEETTEEEEEEEETTS-SEEEEEEE-BS-SSEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC--CE-EEEeecCEEEEEEccCcc-cchhhheecce-EEEEEEe
Confidence 88999999873 1 112222 23356888877652 23 455567899999998765 12211222222 2455554
Q ss_pred ECCCCcEEEEEeCCCcEEEEEcCC-CceEEEec--ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 315 IRPDSKIAATAGWDRRVRIYNYRK-GSALAILK--YHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 315 ~~p~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~--~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.. +.+++.|...+.+.++..+. ++.+..+. .....+.++.|-+|++.++.+..+|.+.++...
T Consensus 137 ~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 137 VF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 44 45899999999999886643 33343332 245678889998777899999999999999885
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.068 Score=46.07 Aligned_cols=148 Identities=13% Similarity=0.062 Sum_probs=81.2
Q ss_pred cceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeec
Q 016769 180 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 259 (383)
Q Consensus 180 ~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~ 259 (383)
+++|..||.++++.+-+..-.. . .....+..+. . ...+++++.++.|..||..++.. +-....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-------~-~~~~~~~~~~----~----~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~ 64 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-------G-IGGPVATAVP----D----GGRVYVASGDGNLYALDAKTGKV-LWRFDL 64 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-------S-CSSEEETEEE----E----TTEEEEEETTSEEEEEETTTSEE-EEEEEC
T ss_pred CCEEEEEECCCCCEEEEEECCC-------C-CCCccceEEE----e----CCEEEEEcCCCEEEEEECCCCCE-EEEeec
Confidence 4688999999988876664210 0 0111111110 0 12467778999999999877532 222221
Q ss_pred cccCeEE-EEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEe-eeeecC-CCCeEEEEECCCCcEEEEEeCCCcEEEEEc
Q 016769 260 HLEPVLC-LSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK-KEINLE-RPGISGTSIRPDSKIAATAGWDRRVRIYNY 336 (383)
Q Consensus 260 h~~~v~~-~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~-~~~~~~-~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~ 336 (383)
..++.. .... ...++.++.++.+..+|..+. ..... ...... ...........++..++.+..++.|..+|+
T Consensus 65 -~~~~~~~~~~~--~~~v~v~~~~~~l~~~d~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 65 -PGPISGAPVVD--GGRVYVGTSDGSLYALDAKTG--KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp -SSCGGSGEEEE--TTEEEEEETTSEEEEEETTTS--CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred -cccccceeeec--ccccccccceeeeEecccCCc--ceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence 111111 1222 234566668888888886543 44333 111111 011112222223677888888999999999
Q ss_pred CCCceEEEecccc
Q 016769 337 RKGSALAILKYHH 349 (383)
Q Consensus 337 ~~~~~~~~~~~h~ 349 (383)
.+|+.+.......
T Consensus 140 ~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 140 KTGKLLWKYPVGE 152 (238)
T ss_dssp TTTEEEEEEESST
T ss_pred CCCcEEEEeecCC
Confidence 9999987765533
|
... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.18 Score=49.19 Aligned_cols=95 Identities=17% Similarity=0.223 Sum_probs=63.4
Q ss_pred CCcEEEEEccCCC--CeeEEeeeeecCCCCeEEEEECCCCcEEEEEe-CCCcEEEEEcCCCce------------EEEec
Q 016769 282 DQKIVLYNLDHST--GSCVIKKEINLERPGISGTSIRPDSKIAATAG-WDRRVRIYNYRKGSA------------LAILK 346 (383)
Q Consensus 282 d~~i~~wdl~~~~--~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~------------~~~~~ 346 (383)
++.|.+.|..... +.. ....+. -.....+++++|||+++++++ .+.++.+.|+.+.+. .....
T Consensus 295 gn~V~VID~~t~~~~~~~-v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSA-LTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCCcc-eEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 4567777765410 111 111121 223567899999999876665 599999999987553 22222
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 347 YHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 347 ~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
- .......+|.++|+...|---|..|-.||+.
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 2 1223567899999999999999999999985
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0041 Score=59.66 Aligned_cols=110 Identities=18% Similarity=0.123 Sum_probs=78.9
Q ss_pred EEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCce---EE
Q 016769 267 LSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA---LA 343 (383)
Q Consensus 267 ~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~---~~ 343 (383)
-.++....+++.|+.-|.+.+|+-... . +++.......+.+....++++..++|+|+..|.|.+|-+....+ ..
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~--~-~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTG--E-MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCch--h-hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 344666677888888999999974321 1 11111112334466677899999999999999999998865322 11
Q ss_pred --E-ecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 344 --I-LKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 344 --~-~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
. -+.|...|.+++|++|+..|.+|..-|.|.+-.++
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 1 12478899999999999999999999999876664
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.36 Score=45.32 Aligned_cols=173 Identities=11% Similarity=0.071 Sum_probs=91.1
Q ss_pred CCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCcee-e
Q 016769 178 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-A 256 (383)
Q Consensus 178 ~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~-~ 256 (383)
..++.+...|.++++.+-+...... .... .+....+. ..+ .++.++.+|.+...|..++...-. .
T Consensus 167 ~~~g~l~ald~~tG~~~W~~~~~~~----~~~~--~~~~sP~v------~~~--~v~~~~~~g~v~a~d~~~G~~~W~~~ 232 (394)
T PRK11138 167 TSNGMLQALNESDGAVKWTVNLDVP----SLTL--RGESAPAT------AFG--GAIVGGDNGRVSAVLMEQGQLIWQQR 232 (394)
T ss_pred CCCCEEEEEEccCCCEeeeecCCCC----cccc--cCCCCCEE------ECC--EEEEEcCCCEEEEEEccCChhhheec
Confidence 4457888899999887766543210 0000 00000000 011 355677788888888776432100 0
Q ss_pred eec-------------cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEE
Q 016769 257 MKV-------------HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 323 (383)
Q Consensus 257 ~~~-------------h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 323 (383)
+.. ...|+ +. +..++.++.++.+...|+.+. ....+... .....+.. ++..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~sP~----v~--~~~vy~~~~~g~l~ald~~tG--~~~W~~~~----~~~~~~~~--~~~~vy 298 (394)
T PRK11138 233 ISQPTGATEIDRLVDVDTTPV----VV--GGVVYALAYNGNLVALDLRSG--QIVWKREY----GSVNDFAV--DGGRIY 298 (394)
T ss_pred cccCCCccchhcccccCCCcE----EE--CCEEEEEEcCCeEEEEECCCC--CEEEeecC----CCccCcEE--ECCEEE
Confidence 000 01111 11 234566778888888877643 33332221 11111222 345666
Q ss_pred EEeCCCcEEEEEcCCCceEEEeccccc-ceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 324 TAGWDRRVRIYNYRKGSALAILKYHHA-TCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 324 s~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
.++.||.+..+|..+++.+.....-.. ...+..+ .+.+|..++.||.+.+.|..+
T Consensus 299 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 299 LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 778899999999999987764321111 1122222 244667788899988887654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.08 Score=51.83 Aligned_cols=193 Identities=11% Similarity=0.153 Sum_probs=111.5
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCC
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 250 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~ 250 (383)
..++++++..|.|-+||......+..+.+... + ..-+| +.+.+...+..+++-+.-.+|-+|+..++
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~-------~-~qdl~-----W~~~rd~Srd~LlaIh~ss~lvLwntdtG 145 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLSHSND-------S-VQDLC-----WVPARDDSRDVLLAIHGSSTLVLWNTDTG 145 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhcCCCc-------c-hhhee-----eeeccCcchheeEEecCCcEEEEEEccCC
Confidence 45778888889999999988877766654221 0 11122 23333333334555566788999987764
Q ss_pred CCceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEc-cCC--C--CeeEEeeee-------ecC---CCC-----
Q 016769 251 GIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNL-DHS--T--GSCVIKKEI-------NLE---RPG----- 309 (383)
Q Consensus 251 ~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl-~~~--~--~~~~~~~~~-------~~~---~~~----- 309 (383)
.. +=......+...|+.+||-.. .+..-+..|.+.+-+. ... . ++..+...- +.+ ...
T Consensus 146 ~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~ 224 (1062)
T KOG1912|consen 146 EK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP 224 (1062)
T ss_pred ce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence 32 211222234556677777443 2333333444433322 110 1 111110000 000 000
Q ss_pred --------eEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCC--EEEEEeCCCcEEEEe
Q 016769 310 --------ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK--LMASASEDSTVALWE 377 (383)
Q Consensus 310 --------i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~--~las~s~d~~i~~w~ 377 (383)
...++|+|--+-+.-....+.+.++|++-..++....-..+.+.-+.+-|+++ .|.+.-.||.+.+|-
T Consensus 225 ~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 225 ASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred cchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 12356788765444456788999999998888877755566677788888876 799999999999994
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0059 Score=57.94 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=63.0
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEeccccccee-EEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN-AVSFSSDCKLMASASEDSTVALWELYPPH 382 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~v~~spd~~~las~s~d~~i~~w~~~~~~ 382 (383)
.+.-+.++|--..+|.+..+|.+-+..+. -+.+.++.-|...+. +++|.|||+.||.|=.||+|++-|+..++
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 35567788888899999999999998887 777888876777776 99999999999999999999999998664
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.19 Score=43.81 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=71.9
Q ss_pred ccCeEEEEEeCCCCceE-EEEcCCcEEEEEccCCCCeeEEeee-eecCC--CCeEEEEECCCCcEEEEEeCCCcEEEEEc
Q 016769 261 LEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKE-INLER--PGISGTSIRPDSKIAATAGWDRRVRIYNY 336 (383)
Q Consensus 261 ~~~v~~~~~~~~~~~~~-s~~~d~~i~~wdl~~~~~~~~~~~~-~~~~~--~~i~~~~~~p~~~~l~s~~~dg~i~iwd~ 336 (383)
....+.+.|+++++.++ +-+..+.|..++++........... ..... +..-++++..+|++.++.-..+.|.++|.
T Consensus 133 ~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 133 LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 34457899999998775 5566788999998765542211111 12222 24778999999998888778999999999
Q ss_pred CCCceEEEecccccceeEEEEe-CCCCEEE
Q 016769 337 RKGSALAILKYHHATCNAVSFS-SDCKLMA 365 (383)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~v~~s-pd~~~la 365 (383)
+ |+.+..+.--...+.+++|. ||.+.|.
T Consensus 213 ~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 213 D-GKLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp T-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred C-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 7 88887776555588999995 6766443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.18 Score=47.64 Aligned_cols=110 Identities=9% Similarity=-0.011 Sum_probs=64.5
Q ss_pred CeEEEEEeCCCCc-eEEEEcC---CcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEE-eCC--CcEEEEE
Q 016769 263 PVLCLSIDESCNG-GISGGAD---QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA-GWD--RRVRIYN 335 (383)
Q Consensus 263 ~v~~~~~~~~~~~-~~s~~~d---~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~-~~d--g~i~iwd 335 (383)
.+....|+|+++. ++..+.+ ..|.++|+.......+ ....+......|+|||+.++-. +.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-----t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-----ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-----ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence 6677888999875 4433333 4477777754432211 1122335567899999866543 333 4677778
Q ss_pred cCCCceEEEecccccceeEEEEeCCCCEEEEEe-CCCc--EEEEeC
Q 016769 336 YRKGSALAILKYHHATCNAVSFSSDCKLMASAS-EDST--VALWEL 378 (383)
Q Consensus 336 ~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s-~d~~--i~~w~~ 378 (383)
+..++. ..+..+......-.|+|||+.|+..+ ..+. |.+.|+
T Consensus 264 l~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl 308 (419)
T PRK04043 264 TNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL 308 (419)
T ss_pred CCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEEC
Confidence 877653 33433433233457999999776655 3444 444444
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.32 Score=43.21 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=64.1
Q ss_pred ccccCeEEEEEeCCCCceEEEEcCCc-------EEEEEccCCCCeeEEeee---eecCCCCeEEEEECCCCcEEEEEe-C
Q 016769 259 VHLEPVLCLSIDESCNGGISGGADQK-------IVLYNLDHSTGSCVIKKE---INLERPGISGTSIRPDSKIAATAG-W 327 (383)
Q Consensus 259 ~h~~~v~~~~~~~~~~~~~s~~~d~~-------i~~wdl~~~~~~~~~~~~---~~~~~~~i~~~~~~p~~~~l~s~~-~ 327 (383)
.|.-.++-+++++++..++..=..+. +.+++-. +....+... .....+.+-++++++++.+++++| .
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence 36667888888887764433221111 1222211 111111100 112336789999999998775555 6
Q ss_pred CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCC
Q 016769 328 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS 371 (383)
Q Consensus 328 dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~ 371 (383)
-+.+.+||..+++.+.... -..+..++-.+++ +++|.+...
T Consensus 238 Gg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 238 GGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred CCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCCCcc
Confidence 8899999999999886543 3456667766665 666665543
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.012 Score=58.19 Aligned_cols=140 Identities=18% Similarity=0.226 Sum_probs=89.8
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeC---------CCc
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---------DGS 241 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~---------dg~ 241 (383)
++++ .|+..|+|-+=|+.+.+.+.++.-+.... ..++..+. .+++|+. |.-
T Consensus 188 r~lf-~G~t~G~V~LrD~~s~~~iht~~aHs~si-SDfDv~GN------------------lLitCG~S~R~~~l~~D~F 247 (1118)
T KOG1275|consen 188 RNLF-CGDTRGTVFLRDPNSFETIHTFDAHSGSI-SDFDVQGN------------------LLITCGYSMRRYNLAMDPF 247 (1118)
T ss_pred cEEE-eecccceEEeecCCcCceeeeeeccccce-eeeeccCC------------------eEEEeecccccccccccch
Confidence 4444 46788999999999888777665321100 01222221 2344333 556
Q ss_pred EEEEeCCCCCCceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEE---ccCCCCeeEEeeeeecCCCCeEEEEECC
Q 016769 242 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYN---LDHSTGSCVIKKEINLERPGISGTSIRP 317 (383)
Q Consensus 242 i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wd---l~~~~~~~~~~~~~~~~~~~i~~~~~~p 317 (383)
|++||+|.-+ .+..++.+..| ..+.|.|+.. .++.++..|...+-| +..+. .-.+......+.+..+.+++
T Consensus 248 vkVYDLRmmr-al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~---~~~~~v~p~~s~i~~fDiSs 322 (1118)
T KOG1275|consen 248 VKVYDLRMMR-ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP---AGVKMVNPNGSGISAFDISS 322 (1118)
T ss_pred hhhhhhhhhh-ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc---cceeEEccCCCcceeEEecC
Confidence 8999998733 24445555555 4456666654 456777888888877 43332 11223344556799999999
Q ss_pred CCcEEEEEeCCCcEEEEE
Q 016769 318 DSKIAATAGWDRRVRIYN 335 (383)
Q Consensus 318 ~~~~l~s~~~dg~i~iwd 335 (383)
++..+|-|..+|.|.+|-
T Consensus 323 n~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 323 NGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCceEEEecccCcEeeec
Confidence 999999999999999997
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.029 Score=52.59 Aligned_cols=107 Identities=13% Similarity=0.123 Sum_probs=73.2
Q ss_pred eEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC-----------CcEE
Q 016769 264 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD-----------RRVR 332 (383)
Q Consensus 264 v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d-----------g~i~ 332 (383)
-+.+.|+|.|.++++--..| |.+|-=.+... .......++.-+.|||+.+||++-+.. ..+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r------~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDR------IQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHH------HHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 35688899999888765544 88894222111 111122468889999999999998742 5789
Q ss_pred EEEcCCCceEEEecc--ccccee-EEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 333 IYNYRKGSALAILKY--HHATCN-AVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 333 iwd~~~~~~~~~~~~--h~~~v~-~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
|||+.+|.....+.. -...++ -..||-|++++|--..| .|.|++.
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEt 333 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYET 333 (698)
T ss_pred EEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEec
Confidence 999999987665543 222222 24799999999987775 5778764
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.049 Score=53.80 Aligned_cols=146 Identities=18% Similarity=0.197 Sum_probs=90.7
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccC-eEEEEEeCCCCceEEEEcCC-----cEEEEEccCCC--C--eeE---
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP-VLCLSIDESCNGGISGGADQ-----KIVLYNLDHST--G--SCV--- 298 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~s~~~d~-----~i~~wdl~~~~--~--~~~--- 298 (383)
.++.|+.+|.|-+.+ +....+..++.+... |..+........+++.+-|+ .+++|+++... . .+.
T Consensus 37 ~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ 114 (933)
T KOG2114|consen 37 SVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEH 114 (933)
T ss_pred eEEEeeccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeee
Confidence 477899999887775 222333556666666 55554454444566655543 47999997542 1 122
Q ss_pred Eeeee--ecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcC----CCceEEEecccccceeEEEEeCCCCEEEEEeCCCc
Q 016769 299 IKKEI--NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR----KGSALAILKYHHATCNAVSFSSDCKLMASASEDST 372 (383)
Q Consensus 299 ~~~~~--~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~ 372 (383)
..... ......++.++++.+-+.+|+|=.||.|..+.-+ .+....-...-..+|+.++|..|++.+..+..-..
T Consensus 115 ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~ 194 (933)
T KOG2114|consen 115 RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQ 194 (933)
T ss_pred eeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecce
Confidence 11111 1234568899999999999999999999988542 22222222224568999999999886333333345
Q ss_pred EEEEeCC
Q 016769 373 VALWELY 379 (383)
Q Consensus 373 i~~w~~~ 379 (383)
|.+|.+.
T Consensus 195 V~~y~l~ 201 (933)
T KOG2114|consen 195 VMLYSLS 201 (933)
T ss_pred eEEEEec
Confidence 7777763
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.15 Score=50.59 Aligned_cols=135 Identities=19% Similarity=0.284 Sum_probs=85.3
Q ss_pred cEEEEeCCCC--CC-cee----ee---ecc--ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC
Q 016769 241 SILVWDIRNP--GI-PLT----AM---KVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 241 ~i~~wdl~~~--~~-~~~----~~---~~h--~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
.|++||++.- .. |.. .+ +.. ..|+.+++++.+...++.|=.+|.|.++.=+....+............
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~ 172 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKE 172 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCC
Confidence 5899998642 11 211 11 222 357888999888666666667888887743221111111111233456
Q ss_pred CeEEEEECCCCcE--EEEEeCCCcEEEEEcCCCce--EEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 309 GISGTSIRPDSKI--AATAGWDRRVRIYNYRKGSA--LAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 309 ~i~~~~~~p~~~~--l~s~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.|++++|..+++. +|++ -..|.+|.+. ++. ...+..|....+|.+|++....+++++. ..+.+|+..
T Consensus 173 pITgL~~~~d~~s~lFv~T--t~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd 243 (933)
T KOG2114|consen 173 PITGLALRSDGKSVLFVAT--TEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSD 243 (933)
T ss_pred CceeeEEecCCceeEEEEe--cceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCC
Confidence 8999999988876 4433 4569999996 443 4567888889999999876554555554 468888764
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.019 Score=52.40 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=96.4
Q ss_pred EEEEEeCCCcEEEEeCCC-CC-CceeeeeccccCeEEEEEeCCCCceEEEEc-CCcEEEEEccCCCCeeEEeeeeecCCC
Q 016769 232 NVLAGYEDGSILVWDIRN-PG-IPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~-~~-~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
..++++.||.++.|.-.- .+ ..+.-+..|...+..+..+-++..+.|.+. |..++++|+.+..-...++... -.
T Consensus 22 fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~---lP 98 (558)
T KOG0882|consen 22 FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD---LP 98 (558)
T ss_pred eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc---CC
Confidence 467899999999996321 11 112233457777777777777766777666 9999999987654332322110 11
Q ss_pred CeEEEEECCCC---cEEEEEeCCCcEEEEEcCCCc--eEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 309 GISGTSIRPDS---KIAATAGWDRRVRIYNYRKGS--ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 309 ~i~~~~~~p~~---~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+......+|.. ..-++.-.++.|.++|-.... ....-+-|..+|..+..+|-+..++|....|+|+-|...
T Consensus 99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence 22222333332 233334468899999985433 233445599999999999999999999999999999886
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.3 Score=36.20 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=60.9
Q ss_pred CceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEeccccccee
Q 016769 274 NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN 353 (383)
Q Consensus 274 ~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 353 (383)
+.|+.|+.|..|++|+=+. . ..++ .+...+..+.-... ..|+-+-.+|+|-+|+- ...++..+.-.. +.
T Consensus 16 ~eLlvGs~D~~IRvf~~~e-----~-~~Ei-~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~-~~ 84 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE-----I-VAEI-TETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSKNQ-VT 84 (111)
T ss_pred ceEEEecCCcEEEEEeCCc-----E-EEEE-ecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccCCC-eE
Confidence 3589999999999996321 1 1122 23356777777655 45788899999999977 455666654333 55
Q ss_pred EEEEe---CCCC-EEEEEeCCCcEEE
Q 016769 354 AVSFS---SDCK-LMASASEDSTVAL 375 (383)
Q Consensus 354 ~v~~s---pd~~-~las~s~d~~i~~ 375 (383)
++++. -||. -|++|-.+|.|.+
T Consensus 85 ~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 85 SMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEEEcCCCCCceEEEEEecCCeEEe
Confidence 55543 3443 7999999998754
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.092 Score=49.26 Aligned_cols=139 Identities=12% Similarity=0.133 Sum_probs=83.0
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCC--CCce-----EEEEcCCcEEEEEccCCCCeeEEeee-ee
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES--CNGG-----ISGGADQKIVLYNLDHSTGSCVIKKE-IN 304 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~-----~s~~~d~~i~~wdl~~~~~~~~~~~~-~~ 304 (383)
+.++.....|.--|++.+. .+..-+.|-. |.-+.+.++ +..+ +.|-.|+.|..||.+......+.... ..
T Consensus 349 l~~~~~~~~l~klDIE~GK-IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGK-IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred eeCCCCcCcceeeecccce-eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 3456666667777777643 3444554444 333333222 2222 55677899999998754331111111 11
Q ss_pred c-CCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEE-EecccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 016769 305 L-ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA-ILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376 (383)
Q Consensus 305 ~-~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w 376 (383)
+ .....+|++-..+| +||.||.+|.||+||- .+...+ .+.+-..+|..|..+.||++++.... .++-|-
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi 497 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLI 497 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEE
Confidence 1 11234555555555 8899999999999998 554443 45567789999999999997765543 344443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.21 E-value=2 Score=45.03 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=49.3
Q ss_pred CCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCce--------EEEecc----------cccceeEEEEeCCCCEEEEEeC
Q 016769 308 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA--------LAILKY----------HHATCNAVSFSSDCKLMASASE 369 (383)
Q Consensus 308 ~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~----------h~~~v~~v~~spd~~~las~s~ 369 (383)
..|..++|++++..+++-..||+|.+|....... ...+.. -...+..++|..+...++....
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDS 506 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEec
Confidence 5699999999998889999999999998643211 111111 1335677888777776665555
Q ss_pred C---CcEEEEeCC
Q 016769 370 D---STVALWELY 379 (383)
Q Consensus 370 d---~~i~~w~~~ 379 (383)
+ ..+.++++.
T Consensus 507 ~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 507 DSNQSKIVLVDID 519 (928)
T ss_pred CcccceEEEEEec
Confidence 4 677777764
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.33 Score=36.00 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=55.3
Q ss_pred ceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCC
Q 016769 230 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 309 (383)
Q Consensus 230 ~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~ 309 (383)
...|++|++|..||+|+=. ..+..++. .+.|..+..... ..++.+-..|+|.+|+-.. .++ ..+.. ..
T Consensus 15 ~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~----RlW--RiKSK-~~ 82 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ----RLW--RIKSK-NQ 82 (111)
T ss_pred cceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc----eee--eeccC-CC
Confidence 3579999999999999732 33444543 456666665444 4577888899998886421 111 11211 22
Q ss_pred eEEEEE---CCCC-cEEEEEeCCCcEE
Q 016769 310 ISGTSI---RPDS-KIAATAGWDRRVR 332 (383)
Q Consensus 310 i~~~~~---~p~~-~~l~s~~~dg~i~ 332 (383)
+.++.+ ..|| +-|++|-.+|+|-
T Consensus 83 ~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 83 VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 444443 3333 3688888888774
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.043 Score=52.36 Aligned_cols=91 Identities=13% Similarity=0.163 Sum_probs=60.8
Q ss_pred eEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCe-EEEEECCCCcEEEEEeCCCcEEEEEcCCCceE
Q 016769 264 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI-SGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL 342 (383)
Q Consensus 264 v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i-~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~ 342 (383)
+..+.|+|..+.+|.+..+|.+.+..++- .... ....+...+ ++++|.|||+.+|.|-.||+|++-|..++..+
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n~---qRlw--tip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLNW---QRLW--TIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEecc---ceeE--eccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34455666666667777777666654441 1111 112122234 49999999999999999999999999998877
Q ss_pred EEe-cccccceeEEEEeC
Q 016769 343 AIL-KYHHATCNAVSFSS 359 (383)
Q Consensus 343 ~~~-~~h~~~v~~v~~sp 359 (383)
... .....+|.++-|.|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 542 23456778877863
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0036 Score=61.65 Aligned_cols=139 Identities=14% Similarity=0.197 Sum_probs=92.6
Q ss_pred eEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEc-CC-cEEEEEccCCCCeeEEeeeeecCCC
Q 016769 231 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQ-KIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 231 ~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~-~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
.+++.|+-.|.|++++..++ ........|..+|+.+..+.++...++.+. .. -..+|++.. ..... ..+ .
T Consensus 1114 ~hL~vG~~~Geik~~nv~sG-~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s-~~~~~----Hsf--~ 1185 (1516)
T KOG1832|consen 1114 NHLAVGSHAGEIKIFNVSSG-SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS-TGGPR----HSF--D 1185 (1516)
T ss_pred ceEEeeeccceEEEEEccCc-cccccccccccccccccccCCcceeeeeccccCchHHHhcccc-ccCcc----ccc--c
Confidence 46889999999999998874 445566789999999988777776555443 33 357998864 11111 111 2
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEec----ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK----YHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 382 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~~ 382 (383)
+-.++.|+..-++-+.|+.-....+||+.++.++.++- +....-+++.|||+.+++.- || -+||+..|.
T Consensus 1186 ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~ 1258 (1516)
T KOG1832|consen 1186 EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPE 1258 (1516)
T ss_pred ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHH
Confidence 34567787665555556666778899999987765421 11122267789999887653 44 689887653
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.021 Score=35.32 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=28.0
Q ss_pred CCceeeEEEeCCCCeEEEecCCCeEEEeeC
Q 016769 18 RASVTDVCFHQTKPILFAGTTGGELRIWDT 47 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~ 47 (383)
...|.+++|+|..++||.|..||.|.|+.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 357999999999999999999999999998
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.025 Score=34.91 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=28.0
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 349 HATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 349 ~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
...|.+++|+|...+||.|+.||.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4568999999999999999999999999873
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.042 Score=53.81 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=63.5
Q ss_pred ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeE
Q 016769 275 GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNA 354 (383)
Q Consensus 275 ~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 354 (383)
.++-|..+|.+.+.+.+... . ....++.. .-+|.|+++++.||+|.|.-+.+.+...++. ...++.+
T Consensus 51 ~~~~GtH~g~v~~~~~~~~~-~-----~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiks 117 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQGNP-K-----TNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKS 117 (846)
T ss_pred eeeeccccceEEEEecCCcc-c-----cccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCccee
Confidence 46777888888888765321 0 11111111 4578999999999999999998877665554 5678999
Q ss_pred EEEeCC-----CCEEEEEeCCCcEEEE
Q 016769 355 VSFSSD-----CKLMASASEDSTVALW 376 (383)
Q Consensus 355 v~~spd-----~~~las~s~d~~i~~w 376 (383)
|+++|| .+++++|+.-| +.++
T Consensus 118 ial~Pd~~~~~sk~fv~GG~ag-lvL~ 143 (846)
T KOG2066|consen 118 IALHPDFSRQQSKQFVSGGMAG-LVLS 143 (846)
T ss_pred EEeccchhhhhhhheeecCcce-EEEe
Confidence 999998 56889999887 5554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.1 Score=46.49 Aligned_cols=108 Identities=15% Similarity=0.220 Sum_probs=67.8
Q ss_pred EEEEeCCCCceEEE----EcC-CcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEe---CCCcEEEEEcC
Q 016769 266 CLSIDESCNGGISG----GAD-QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG---WDRRVRIYNYR 337 (383)
Q Consensus 266 ~~~~~~~~~~~~s~----~~d-~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~---~dg~i~iwd~~ 337 (383)
.++|-.++.++++. ..+ ..|++||-+. . +...-....+.-.++++.|.|..+++-. +|++|.+|.-+
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~----Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDREG-A----LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEecccc-h----hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence 35555555555441 234 7899998541 0 1111111122345788999998887765 56689999763
Q ss_pred ---CCceEEEecccccceeEEEEeCCCCEEEE---EeCCCcEEEEeC
Q 016769 338 ---KGSALAILKYHHATCNAVSFSSDCKLMAS---ASEDSTVALWEL 378 (383)
Q Consensus 338 ---~~~~~~~~~~h~~~v~~v~~spd~~~las---~s~d~~i~~w~~ 378 (383)
.++....+...+..|..++|+.++..||. ......|++|-+
T Consensus 275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence 34433344444556999999999999987 666666999965
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.021 Score=56.25 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=63.5
Q ss_pred eEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+++++|+|..-.++.|=.-|.+.+|...+.+.......|..+|.-+.|||+|..|.|+..=|.|.+|..+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5679999998888888888999999999888887778899999999999999999999999999999864
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.0047 Score=58.72 Aligned_cols=136 Identities=18% Similarity=0.323 Sum_probs=82.2
Q ss_pred CCCcEEEEeCCCCC-Cceee--eec-cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEE
Q 016769 238 EDGSILVWDIRNPG-IPLTA--MKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGT 313 (383)
Q Consensus 238 ~dg~i~~wdl~~~~-~~~~~--~~~-h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~ 313 (383)
.|..+.|||+.+.- .|... +.. ..+....+++..+.+.+++|.....+.++|++-...++.. .....+.++
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s-----vnTk~vqG~ 201 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS-----VNTKYVQGI 201 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh-----hhhhhcccc
Confidence 36679999997631 12111 111 2334456777766666788888889999988632211111 111235667
Q ss_pred EECC-CCcEEEEEeCCCcEEEEEc-CCC-ceEEEecccc----cceeEEEEeCCCC-EEEEEeCC-CcEEEEeCC
Q 016769 314 SIRP-DSKIAATAGWDRRVRIYNY-RKG-SALAILKYHH----ATCNAVSFSSDCK-LMASASED-STVALWELY 379 (383)
Q Consensus 314 ~~~p-~~~~l~s~~~dg~i~iwd~-~~~-~~~~~~~~h~----~~v~~v~~spd~~-~las~s~d-~~i~~w~~~ 379 (383)
.+.| .+.|+++. .||-|.+||. ..- +++.++...+ +.+..++|+|-.. .|++.++| ++|+++++.
T Consensus 202 tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 202 TVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 8888 67787765 5999999994 222 2222222122 2489999999654 66776665 577888763
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.91 Score=42.48 Aligned_cols=148 Identities=14% Similarity=0.183 Sum_probs=80.0
Q ss_pred EEEEEeCCCcEEEEeCCCCCCcee-eeec------cccCeEEEEE-----eCCC---CceEEEEcCCcEEEEEccC-CCC
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLT-AMKV------HLEPVLCLSI-----DESC---NGGISGGADQKIVLYNLDH-STG 295 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~-~~~~------h~~~v~~~~~-----~~~~---~~~~s~~~d~~i~~wdl~~-~~~ 295 (383)
++++|+++|.+.|.|+|.+..... .+.. ....+.++.| ..++ ..++.|...|.+.+|.+.. ..+
T Consensus 99 Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g 178 (395)
T PF08596_consen 99 FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNG 178 (395)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG
T ss_pred EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCC
Confidence 478899999999999998654332 1112 2235667766 2222 2467888899999998863 333
Q ss_pred eeEEeee--eecCCCCeEEEE-EC------------------CC--CcEEEEEeCCCcEEEEEcCCCceEEEecccccce
Q 016769 296 SCVIKKE--INLERPGISGTS-IR------------------PD--SKIAATAGWDRRVRIYNYRKGSALAILKYHHATC 352 (383)
Q Consensus 296 ~~~~~~~--~~~~~~~i~~~~-~~------------------p~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v 352 (383)
....... ...+.+.+..+. |+ +. -+-++....+.-||++...+.+...........+
T Consensus 179 ~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~ 258 (395)
T PF08596_consen 179 RFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLC 258 (395)
T ss_dssp -EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEE
T ss_pred ceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeecccccc
Confidence 3332221 112223333322 21 10 0123444568889999998877654332332334
Q ss_pred eEEEEe-----CCCCEEEEEeCCCcEEEEeCC
Q 016769 353 NAVSFS-----SDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 353 ~~v~~s-----pd~~~las~s~d~~i~~w~~~ 379 (383)
..+.+- ..+..|++-..||.|+++.+.
T Consensus 259 ~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 259 SSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp EEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred ceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 444552 356689999999999999884
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.0053 Score=58.36 Aligned_cols=143 Identities=15% Similarity=0.245 Sum_probs=87.3
Q ss_pred EEEEeCCCcEEEEeCCCCCCc-eeeeeccccCeEEEEEeCCCC-ceEEE----EcCCcEEEEEccCCCCeeEEeeeeec-
Q 016769 233 VLAGYEDGSILVWDIRNPGIP-LTAMKVHLEPVLCLSIDESCN-GGISG----GADQKIVLYNLDHSTGSCVIKKEINL- 305 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~~~s~----~~d~~i~~wdl~~~~~~~~~~~~~~~- 305 (383)
+..|..+|.|-+-.++.+..- -.....|..+.++++|.+... .++.| -.|-.+.|||+...-........+..
T Consensus 73 lavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~ 152 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS 152 (783)
T ss_pred hhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccc
Confidence 445777888888877654322 223456778889999966533 34443 23566899999754111111111111
Q ss_pred CCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCc-eEEEecccccceeEEEEeC-CCCEEEEEeCCCcEEEEeC
Q 016769 306 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS-ALAILKYHHATCNAVSFSS-DCKLMASASEDSTVALWEL 378 (383)
Q Consensus 306 ~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~sp-d~~~las~s~d~~i~~w~~ 378 (383)
...+.+++++-.+.+.+.+|...+.++++|++... ....+ ..+.+..+...| .+.++++-+ |+.|-+||.
T Consensus 153 ~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 153 TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccc
Confidence 12345677777888999999999999999997321 11111 122344445666 556877666 999999994
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.65 Score=46.37 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=54.0
Q ss_pred eeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecC
Q 016769 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (383)
Q Consensus 22 ~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~ 94 (383)
+++||||..-.|+.|=+-|.+-||.....+.-.....| ...+..+.|++ +|+.++|+..-|.+.+|.+.
T Consensus 63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th--~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 63 TSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETH--PAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhccChHHHHHhhccccceeEEEecCCceeeeeccCC--CCCceeEEecC--CCCeEEEcCCCceeEEEEee
Confidence 46899999989999999999999997554332221123 34678889998 47899999999999999986
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.6 Score=39.32 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=47.8
Q ss_pred CCeEEEEECCCCcEEEEEeC---------CCcEEEEEcC-CCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEE
Q 016769 308 PGISGTSIRPDSKIAATAGW---------DRRVRIYNYR-KGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALW 376 (383)
Q Consensus 308 ~~i~~~~~~p~~~~l~s~~~---------dg~i~iwd~~-~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w 376 (383)
...+...+.|+|.+.+..-. -..=.+|-++ .+.....+..|-..-+.++||||++ ++++=+..+.|.-|
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 45677888999987664433 0111344444 4666666666666679999999997 45555666778777
Q ss_pred eCC
Q 016769 377 ELY 379 (383)
Q Consensus 377 ~~~ 379 (383)
++.
T Consensus 191 ~~d 193 (307)
T COG3386 191 DLD 193 (307)
T ss_pred ecC
Confidence 775
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.063 Score=48.49 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=66.2
Q ss_pred CCCCeeeeeecCCceeeEEEeCCCC-eEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccC
Q 016769 7 PPDPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 7 ~~~~~~~l~gH~~~V~~v~f~~~~~-~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
.-++.+-+.+|...|..|+|+|... +|..++.+..|+|-|+.+..++.....+ ..+.+.++.-+ ..+.+..|-..
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~---~~~wSC~wDld-e~h~IYaGl~n 257 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY---NQIWSCCWDLD-ERHVIYAGLQN 257 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc---CCceeeeeccC-CcceeEEeccC
Confidence 3344567789999999999999877 8999999999999999887666554333 34566666643 23566788899
Q ss_pred CeEEEeecCCCC
Q 016769 86 GTVKCWDIENGG 97 (383)
Q Consensus 86 ~ti~~Wd~~~~~ 97 (383)
|.|-++|+..++
T Consensus 258 G~VlvyD~R~~~ 269 (463)
T KOG1645|consen 258 GMVLVYDMRQPE 269 (463)
T ss_pred ceEEEEEccCCC
Confidence 999999997653
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.11 Score=52.70 Aligned_cols=98 Identities=13% Similarity=0.292 Sum_probs=67.0
Q ss_pred eEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEE
Q 016769 276 GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAV 355 (383)
Q Consensus 276 ~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v 355 (383)
++.|+..|.+...|+...=+. +. .-+...+++++++|+.+|+.++.|-.+|-|.+||+..++.+..+.-|..+...+
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~--~~-~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGP--LH-QNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred EEEEcCchhhhhhhhhcccch--hh-cCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 355666666766655321000 00 011234679999999999999999999999999999999888776666555444
Q ss_pred E---EeCCCCEEEEEeCCCcEEEEeC
Q 016769 356 S---FSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 356 ~---~spd~~~las~s~d~~i~~w~~ 378 (383)
- +..++..+.++...|. +|++
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3 4456667888877775 7765
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.94 E-value=1 Score=40.61 Aligned_cols=109 Identities=19% Similarity=0.214 Sum_probs=71.5
Q ss_pred ccCeEEEEEeCCCCceEEEEc-CCcEEEEEccCCCCeeEE---eeeeecCCCCeEEEEECCCCcEEEEEeCCC-cEEEEE
Q 016769 261 LEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVI---KKEINLERPGISGTSIRPDSKIAATAGWDR-RVRIYN 335 (383)
Q Consensus 261 ~~~v~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~---~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg-~i~iwd 335 (383)
..--+.++|+++++.++.... .+.|..|+++..++...- ......+.+..-++++..+|.+-+++.++| .|.+|+
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 333457999999987766654 477888887632111100 011122334556778888888876777776 999999
Q ss_pred cCCCceEEEecccccceeEEEEe-CCCCEE-EEEeCC
Q 016769 336 YRKGSALAILKYHHATCNAVSFS-SDCKLM-ASASED 370 (383)
Q Consensus 336 ~~~~~~~~~~~~h~~~v~~v~~s-pd~~~l-as~s~d 370 (383)
.+ ++.+..+.-....+.+++|- |+.+.| +++...
T Consensus 242 pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 242 PD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred CC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 98 99888887776778888994 666644 444443
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.084 Score=44.20 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=55.9
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEE-eCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCC-CC
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER-PG 309 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~-~~ 309 (383)
-++.|+.+|.|.+|.....+........-.+++.++-. -.++....+++.|+.|+.|++........ ...+. ..
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~----~g~h~~~~ 147 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY----VGQHNFES 147 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeee----eccccCCC
Confidence 37789999999999876432211111112334444433 22333557888999999998864321111 11111 12
Q ss_pred eEEEEECCCCcEEEEE--eCCCcEEEEEcCC
Q 016769 310 ISGTSIRPDSKIAATA--GWDRRVRIYNYRK 338 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~--~~dg~i~iwd~~~ 338 (383)
+..+.++..+++++.+ |.|..++.|++..
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhh
Confidence 3333344455566666 6666666666644
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.73 E-value=2.2 Score=40.46 Aligned_cols=162 Identities=18% Similarity=0.236 Sum_probs=80.0
Q ss_pred ceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEE--eCCCCCCceeeee
Q 016769 181 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW--DIRNPGIPLTAMK 258 (383)
Q Consensus 181 ~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~w--dl~~~~~~~~~~~ 258 (383)
..+.++|+++++....+..+.....+.+++.++ ..+++...||...|| |+.... +..+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~-----------------~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt 278 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGS-----------------KLAFSSSRDGSPDIYLMDLDGKN--LPRLT 278 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCC-----------------EEEEEECCCCCccEEEEcCCCCc--ceecc
Confidence 358899998877544443222222223333332 234455556665544 665433 22232
Q ss_pred ccccCeEEEEEeCCCCceE-EEEcCCcEEEE--EccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC-Cc--EE
Q 016769 259 VHLEPVLCLSIDESCNGGI-SGGADQKIVLY--NLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD-RR--VR 332 (383)
Q Consensus 259 ~h~~~v~~~~~~~~~~~~~-s~~~d~~i~~w--dl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d-g~--i~ 332 (383)
.-...-..=+|+|++..++ +.+..|.-.|| +++..+. ..+. .....-..-.++|||++|+..+.. |. |.
T Consensus 279 ~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT----~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~ 353 (425)
T COG0823 279 NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLT----FSGGGNSNPVWSPDGDKIVFESSSGGQWDID 353 (425)
T ss_pred cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEee----ccCCCCcCccCCCCCCEEEEEeccCCceeeE
Confidence 2111122345688888764 44556665555 4443321 1111 111122255688999988877743 44 56
Q ss_pred EEEcCCCceEEEecccccceeEEEEeCCCCEEEEE
Q 016769 333 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASA 367 (383)
Q Consensus 333 iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~ 367 (383)
+.|+.++.....+ .+......-.|.|+++++...
T Consensus 354 ~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 354 KNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred EeccCCCCcEEEc-cccccCCCCCcCCCCceEEEe
Confidence 6666555533222 222223334567777755443
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.34 Score=47.11 Aligned_cols=104 Identities=10% Similarity=0.082 Sum_probs=70.4
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeec--cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEee---eeecC
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKV--HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK---EINLE 306 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~---~~~~~ 306 (383)
.++.|+.-|.+.+|+-.. +.. ...+. -...+....+++.....+.|+..+.|.++-++... ...+.. .-+.+
T Consensus 47 ~l~~GsS~G~lyl~~R~~-~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~-p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHT-GEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL-PRDLDYVTPCDKSH 123 (726)
T ss_pred eEEEecccceEEEEecCc-hhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC-CCcceeeccccccC
Confidence 467788899999998443 322 22222 22334445556655566778888999999887632 222211 11234
Q ss_pred CCCeEEEEECCCCcEEEEEeCCCcEEEEEcCC
Q 016769 307 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 338 (383)
Q Consensus 307 ~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~ 338 (383)
...|++++|++|++.+.+|...|+|..-.+++
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEech
Confidence 56799999999999999999999999988876
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=94.42 E-value=2.7 Score=38.24 Aligned_cols=138 Identities=14% Similarity=0.214 Sum_probs=77.3
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeecccc--CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
++.+ ..+.|.+|++........ ...+.. .+.++... ++.++.|...+.+.++.++........ .........+
T Consensus 101 lv~~-~g~~l~v~~l~~~~~l~~-~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~-va~d~~~~~v 175 (321)
T PF03178_consen 101 LVVA-VGNKLYVYDLDNSKTLLK-KAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLIL-VARDYQPRWV 175 (321)
T ss_dssp EEEE-ETTEEEEEEEETTSSEEE-EEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEE-EEEESS-BEE
T ss_pred EEEe-ecCEEEEEEccCcccchh-hheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEE-EEecCCCccE
Confidence 4433 468999999987552222 222222 44444443 457888888888988866543221211 1112223357
Q ss_pred EEEEECCCCcEEEEEeCCCcEEEEEcCC-------Cc-eEEEe-ccc-ccceeEE---EEeCC--CC------EEEEEeC
Q 016769 311 SGTSIRPDSKIAATAGWDRRVRIYNYRK-------GS-ALAIL-KYH-HATCNAV---SFSSD--CK------LMASASE 369 (383)
Q Consensus 311 ~~~~~~p~~~~l~s~~~dg~i~iwd~~~-------~~-~~~~~-~~h-~~~v~~v---~~spd--~~------~las~s~ 369 (383)
.++.|-+++..++.+..+|.+.++.... +. .+... .-| ...|+++ .+.|. +. .++.++.
T Consensus 176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~ 255 (321)
T PF03178_consen 176 TAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTV 255 (321)
T ss_dssp EEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEET
T ss_pred EEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEec
Confidence 7777775667899999999999998852 22 23222 223 3456666 44552 22 4888889
Q ss_pred CCcEEE
Q 016769 370 DSTVAL 375 (383)
Q Consensus 370 d~~i~~ 375 (383)
+|.|-.
T Consensus 256 ~G~Ig~ 261 (321)
T PF03178_consen 256 DGSIGV 261 (321)
T ss_dssp TS-EEE
T ss_pred CCEEEE
Confidence 998873
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.12 Score=52.61 Aligned_cols=72 Identities=25% Similarity=0.537 Sum_probs=49.9
Q ss_pred CCceeeEEEeCCCCeEEEecCCCeEEEeeCccccccccccccccc-ceeeeeeecCCCCcceeEecccCCeEEEeec
Q 016769 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-HGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~ 93 (383)
.++|+++||+.+|+.|+.|=.+|.|.+||...++.+..+..+... .++..+.... +++.++++..-|. +|++
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~--~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTS--QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeC--CCcEEEEccCCCc--eEEE
Confidence 479999999999999999999999999999877766655444422 2333333322 2345666655554 6665
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.025 Score=56.11 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=51.0
Q ss_pred eEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEE-----------EEeCCCCEEEEEeCCCcEEEEeC
Q 016769 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAV-----------SFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v-----------~~spd~~~las~s~d~~i~~w~~ 378 (383)
|.+.-|-++.-++-.+-.+++|++.++.+... ..+++|...+..+ ..||||..+|++..||.+++|.+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 44444556667788888899999988866443 3455565544333 37999999999999999999988
Q ss_pred C
Q 016769 379 Y 379 (383)
Q Consensus 379 ~ 379 (383)
|
T Consensus 265 y 265 (1283)
T KOG1916|consen 265 Y 265 (1283)
T ss_pred e
Confidence 6
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.30 E-value=1.6 Score=44.23 Aligned_cols=74 Identities=15% Similarity=0.250 Sum_probs=54.1
Q ss_pred CCeEEEEECCCCcEEEEEeCCCcEEEEEcCC----------Cce-EE--Ee--------cccccceeEEEEeCC---CCE
Q 016769 308 PGISGTSIRPDSKIAATAGWDRRVRIYNYRK----------GSA-LA--IL--------KYHHATCNAVSFSSD---CKL 363 (383)
Q Consensus 308 ~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~----------~~~-~~--~~--------~~h~~~v~~v~~spd---~~~ 363 (383)
..|..+.++|+|+++|..|..| |.|-.+.. ++. +. ++ ..+...|..+.|+|. +.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4588899999999999988765 55666632 111 11 11 133457889999997 479
Q ss_pred EEEEeCCCcEEEEeCCCCC
Q 016769 364 MASASEDSTVALWELYPPH 382 (383)
Q Consensus 364 las~s~d~~i~~w~~~~~~ 382 (383)
|+.=..|+++|+||+.+|.
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 9999999999999998765
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=94.17 E-value=2.1 Score=40.13 Aligned_cols=75 Identities=11% Similarity=0.166 Sum_probs=52.8
Q ss_pred cCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEE--ecc------cccceeEEEEe-----CCC---CEEEEEe
Q 016769 305 LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI--LKY------HHATCNAVSFS-----SDC---KLMASAS 368 (383)
Q Consensus 305 ~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~------h~~~v~~v~~s-----pd~---~~las~s 368 (383)
...+.|++++.+ |-.++|.|..+|++.|.|++-+..+.. +.. ....+.++.|+ -|+ -.|..|.
T Consensus 84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 345778999997 556999999999999999977776653 222 22357788886 244 4788999
Q ss_pred CCCcEEEEeCCC
Q 016769 369 EDSTVALWELYP 380 (383)
Q Consensus 369 ~d~~i~~w~~~~ 380 (383)
..|.+.+|++-|
T Consensus 163 n~G~v~~fkIlp 174 (395)
T PF08596_consen 163 NSGNVLTFKILP 174 (395)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCCEEEEEEec
Confidence 999999999853
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.96 Score=42.98 Aligned_cols=56 Identities=14% Similarity=0.304 Sum_probs=37.1
Q ss_pred CcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 319 SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 319 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
|..|+..+. +.|.+||+.+++.+..+. ..+|..|.||++|.++|-.+.| .+.+++.
T Consensus 117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~--v~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 117 GNLLGVKSS-DFICFYDWETGKLIRRID--VSAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp SSSEEEEET-TEEEEE-TTT--EEEEES--S-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CcEEEEECC-CCEEEEEhhHcceeeEEe--cCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 666666554 489999999999998886 2348899999999999998876 5666553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.7 Score=43.68 Aligned_cols=121 Identities=14% Similarity=0.085 Sum_probs=65.8
Q ss_pred CcEEEEeCCCCCCce-eeeeccccCeEEEEEeCCCCce-EEEEcCCcEEEE--EccCCCCeeEEeeeeecCCCCeEEEEE
Q 016769 240 GSILVWDIRNPGIPL-TAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLY--NLDHSTGSCVIKKEINLERPGISGTSI 315 (383)
Q Consensus 240 g~i~~wdl~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~-~s~~~d~~i~~w--dl~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (383)
..+.++|++++.... ..+.+ ....-.|+|++..+ ++...|+...+| |+...+.. .+....+.-..=.|
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g---~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-----~Lt~~~gi~~~Ps~ 289 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG---NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-----RLTNGFGINTSPSW 289 (425)
T ss_pred ceEEEEeccCCccceeeccCC---ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-----ecccCCccccCccC
Confidence 468899998754432 22222 33345678888765 455667776555 55443311 11111111224568
Q ss_pred CCCCcEEEEEe-CCCcEEE--EEcCCCceE-EEecccccceeEEEEeCCCCEEEEEeCC
Q 016769 316 RPDSKIAATAG-WDRRVRI--YNYRKGSAL-AILKYHHATCNAVSFSSDCKLMASASED 370 (383)
Q Consensus 316 ~p~~~~l~s~~-~dg~i~i--wd~~~~~~~-~~~~~h~~~v~~v~~spd~~~las~s~d 370 (383)
+|||++++=.+ ..|.-.| .|++.+... .+..+-.. ..-.|||||++++..+..
T Consensus 290 spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~--~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 290 SPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN--SNPVWSPDGDKIVFESSS 346 (425)
T ss_pred CCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC--cCccCCCCCCEEEEEecc
Confidence 99998765544 4554444 455544332 22222222 245689999988877743
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.93 E-value=4.4 Score=36.15 Aligned_cols=141 Identities=17% Similarity=0.218 Sum_probs=82.6
Q ss_pred eCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEc-------CCcEEEEEcc----------CCCCeeEE
Q 016769 237 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-------DQKIVLYNLD----------HSTGSCVI 299 (383)
Q Consensus 237 ~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-------d~~i~~wdl~----------~~~~~~~~ 299 (383)
...|.|-|||.+..-..+..+..|.----.+.+.+++..|+.+.. .|+.++ |++ ..++..+.
T Consensus 74 ~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 74 TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLE 152 (305)
T ss_pred CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceee
Confidence 447889999988433334444444332234556777766665421 133333 222 22333322
Q ss_pred eeee--ecCCCCeEEEEECCCCcEEEEEeCCCc-------EEEEEcCCCceEEE-------ecccccceeEEEEeCCCCE
Q 016769 300 KKEI--NLERPGISGTSIRPDSKIAATAGWDRR-------VRIYNYRKGSALAI-------LKYHHATCNAVSFSSDCKL 363 (383)
Q Consensus 300 ~~~~--~~~~~~i~~~~~~p~~~~l~s~~~dg~-------i~iwd~~~~~~~~~-------~~~h~~~v~~v~~spd~~~ 363 (383)
+..+ ..+.-++.-+++.++|..+...-+.|. +.+++.. +.+.. +..-...+-+|++++++..
T Consensus 153 q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 153 QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRL 230 (305)
T ss_pred eeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence 2223 334557889999999887776666653 2233332 21221 2234578999999999985
Q ss_pred E-EEEeCCCcEEEEeCCC
Q 016769 364 M-ASASEDSTVALWELYP 380 (383)
Q Consensus 364 l-as~s~d~~i~~w~~~~ 380 (383)
+ +|+=..+++.+||...
T Consensus 231 ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 231 IAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred EEEECCCCCEEEEEECCC
Confidence 5 6777888999998754
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.12 Score=51.63 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=61.7
Q ss_pred CCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEE-eCCC-cEEEEeCC
Q 016769 306 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASA-SEDS-TVALWELY 379 (383)
Q Consensus 306 ~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~-s~d~-~i~~w~~~ 379 (383)
+....++++|+-+.+.++.|+-.|.|++|++.+|.......+|..+|.-+.=+-||.++.+. +... -..+|++.
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 34568899999999999999999999999999999999999999999999888899865543 3333 46778774
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=93.06 E-value=5.9 Score=34.91 Aligned_cols=140 Identities=19% Similarity=0.271 Sum_probs=79.6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEe-----e-----
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK-----K----- 301 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~-----~----- 301 (383)
+++.|+++| |.++++.......... +..+|..+.+-+..+.++.- .|+.+.+++++......... +
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEE-cCCccEEEEchhhcccccccccccccccccc
Confidence 578899998 9999984333332222 23348888887766654433 46999999986533211000 0
Q ss_pred eeecCCCCeEEEE--ECCCCcEEEEEeCCCcEEEEEcCCC-----ceEEEecccccceeEEEEeCCCCEEEEEeCCCcEE
Q 016769 302 EINLERPGISGTS--IRPDSKIAATAGWDRRVRIYNYRKG-----SALAILKYHHATCNAVSFSSDCKLMASASEDSTVA 374 (383)
Q Consensus 302 ~~~~~~~~i~~~~--~~p~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~ 374 (383)
.......++..++ -...+...++....++|.+|..... +..+.+. -...+.+++|. ++.++.|..++ ..
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~ 160 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FY 160 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eE
Confidence 0011122344444 1233333344455669999988653 2334432 45678889998 45677776555 45
Q ss_pred EEeCC
Q 016769 375 LWELY 379 (383)
Q Consensus 375 ~w~~~ 379 (383)
+.|+.
T Consensus 161 ~idl~ 165 (275)
T PF00780_consen 161 LIDLN 165 (275)
T ss_pred EEecC
Confidence 55554
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.62 E-value=2.7 Score=41.61 Aligned_cols=105 Identities=10% Similarity=-0.039 Sum_probs=57.8
Q ss_pred cCeEEEEEeCCCCceEEEE------cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC-------
Q 016769 262 EPVLCLSIDESCNGGISGG------ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD------- 328 (383)
Q Consensus 262 ~~v~~~~~~~~~~~~~s~~------~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d------- 328 (383)
..+....+++++..++... .|..-.||=......... +. .....+.-.|+|||+.++.....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~----lt-~g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQ----VL-EGHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCccee----ee-cCCCCCCceECCCCCceEEEecCcceEEEe
Confidence 3566778888887664433 244444453321111111 11 11236677899998877766533
Q ss_pred -----CcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 016769 329 -----RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVAL 375 (383)
Q Consensus 329 -----g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~ 375 (383)
+.+.+.+++.+.... ...+.|..++|||||+.+|... ++.|.+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 122222333222211 2345799999999999887765 455555
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.42 E-value=4.6 Score=38.45 Aligned_cols=98 Identities=19% Similarity=0.211 Sum_probs=64.2
Q ss_pred EEEEeCCCcEEEEeCCCCCC-ceeeeeccc----cCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCC
Q 016769 233 VLAGYEDGSILVWDIRNPGI-PLTAMKVHL----EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 307 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~-~~~~~~~h~----~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~ 307 (383)
.+.|-.|..|.-||+|-.+. .+...+.|. ....|.+-..+| +++.||.+|.|++||--.. . .+..+..-.
T Consensus 397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~---~-AKTAlPgLG 471 (644)
T KOG2395|consen 397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR---R-AKTALPGLG 471 (644)
T ss_pred cEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhh---h-hhhcccccC
Confidence 45688899999999985443 233334442 123444433333 5788999999999974211 1 122334455
Q ss_pred CCeEEEEECCCCcEEEEEeCCCcEEEEEc
Q 016769 308 PGISGTSIRPDSKIAATAGWDRRVRIYNY 336 (383)
Q Consensus 308 ~~i~~~~~~p~~~~l~s~~~dg~i~iwd~ 336 (383)
..|..+..+.||+.|++.+ +.++.+-++
T Consensus 472 ~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 472 DAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred CceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 6799999999999988665 667777776
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=92.10 E-value=7.5 Score=33.82 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=71.2
Q ss_pred EEEEEeCCCcEEEEeCCCCCCc--ee---eee-----ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccC--CCCeeEE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIP--LT---AMK-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH--STGSCVI 299 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~--~~---~~~-----~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~--~~~~~~~ 299 (383)
.+++.-.++.+.++++...... .. .++ .++..+..+++|+..+.++.+-......+|.++. .......
T Consensus 78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 78 YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EE
T ss_pred EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceee
Confidence 4555545888988988432211 11 111 2334578999999988888776666677777754 1111111
Q ss_pred eee-----eecCCCCeEEEEECCCC-cEEEEEeCCCcEEEEEcCCCceEEEec--c--c-----ccceeEEEEeCCCCEE
Q 016769 300 KKE-----INLERPGISGTSIRPDS-KIAATAGWDRRVRIYNYRKGSALAILK--Y--H-----HATCNAVSFSSDCKLM 364 (383)
Q Consensus 300 ~~~-----~~~~~~~i~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~--h-----~~~v~~v~~spd~~~l 364 (383)
... .......+++++++|.. .+++.....+.|..+| .+|+.+..+. . | -...-.|+|.|+|++.
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 111 11223457889999864 5777778888999999 5677665442 1 1 1356788999999866
Q ss_pred EEE
Q 016769 365 ASA 367 (383)
Q Consensus 365 as~ 367 (383)
++.
T Consensus 237 Ivs 239 (248)
T PF06977_consen 237 IVS 239 (248)
T ss_dssp EEE
T ss_pred EEc
Confidence 654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=92.07 E-value=13 Score=36.65 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=62.9
Q ss_pred CCcEEEEeCCC----CCCceeeeeccccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCCe--------eEEeeeeec
Q 016769 239 DGSILVWDIRN----PGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGS--------CVIKKEINL 305 (383)
Q Consensus 239 dg~i~~wdl~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~--------~~~~~~~~~ 305 (383)
++.|.+.|.++ ....+..+... .....+.++|++++++.++ .++++.+.|+...... ..+..+.+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 56788888776 22223333222 2345788999999876554 5899999998753210 011122222
Q ss_pred CCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCC
Q 016769 306 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 338 (383)
Q Consensus 306 ~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~ 338 (383)
.-+....+|.++|+...+---|..|..||+.+
T Consensus 374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 12345678999998888888899999999975
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.43 E-value=2.1 Score=40.44 Aligned_cols=70 Identities=26% Similarity=0.264 Sum_probs=47.2
Q ss_pred eEEEEECCCCcEEEEE-eCCC----cEEEEEcCCCceEEEecccccce-eEEEEeCCCCEEEEEeCCC-----------c
Q 016769 310 ISGTSIRPDSKIAATA-GWDR----RVRIYNYRKGSALAILKYHHATC-NAVSFSSDCKLMASASEDS-----------T 372 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~h~~~v-~~v~~spd~~~las~s~d~-----------~ 372 (383)
+..+.++||++++|-+ +..| .++++|+.+++.+... ....- ..+.|.+|++.|.....|. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3467789999987755 3444 5999999999876422 11222 2389999999877776554 3
Q ss_pred EEEEeCCCC
Q 016769 373 VALWELYPP 381 (383)
Q Consensus 373 i~~w~~~~~ 381 (383)
|+.|++..+
T Consensus 204 v~~~~~gt~ 212 (414)
T PF02897_consen 204 VYRHKLGTP 212 (414)
T ss_dssp EEEEETTS-
T ss_pred EEEEECCCC
Confidence 777877643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=91.34 E-value=10 Score=35.52 Aligned_cols=101 Identities=25% Similarity=0.342 Sum_probs=50.5
Q ss_pred eCCCcEEEEeCCCCCCceeeeecccc--CeEEEEE--eCCCCceEEEEc-CCcEEEEEccCCCCeeEEeeeeecC-----
Q 016769 237 YEDGSILVWDIRNPGIPLTAMKVHLE--PVLCLSI--DESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLE----- 306 (383)
Q Consensus 237 ~~dg~i~~wdl~~~~~~~~~~~~h~~--~v~~~~~--~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~~~~~~~~----- 306 (383)
-...++.+||+.+ ...++++....+ ...-+.| +|.....++++. ...|-+|--+ ..+....++.+...
T Consensus 219 ~yG~~l~vWD~~~-r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~-~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 219 KYGHSLHVWDWST-RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKD-DDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp -S--EEEEEETTT-TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE--ETTEEEEEEEEEE--EE--
T ss_pred cccCeEEEEECCC-CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEc-CCCCeeeeEEEECCCcccC
Confidence 3467899999987 455666654322 2344555 666665555443 4445444332 12333333221110
Q ss_pred --------------CCCeEEEEECCCCcEEEEEeC-CCcEEEEEcCCC
Q 016769 307 --------------RPGISGTSIRPDSKIAATAGW-DRRVRIYNYRKG 339 (383)
Q Consensus 307 --------------~~~i~~~~~~p~~~~l~s~~~-dg~i~iwd~~~~ 339 (383)
..-++.+.+|.|.++|...++ +|.||-||+...
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 123688999999999888885 899999999764
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.7 Score=37.04 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=48.2
Q ss_pred ECCCCcEEEEEeCCCcEEEEEcCCCceEEE-------ec-------ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 315 IRPDSKIAATAGWDRRVRIYNYRKGSALAI-------LK-------YHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 315 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~-------~~-------~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+..+++++++-+.+|.+++||+.+++.+.. +. .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 445778999999999999999988765421 11 2445788888998888777765 4678888764
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.30 E-value=5.3 Score=41.81 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=48.8
Q ss_pred CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEE
Q 016769 263 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 334 (383)
Q Consensus 263 ~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iw 334 (383)
.|.++.|..+.+.+..+..+|.|.+-|..... ......-..+|.+++++||.+.++..+.++++.+-
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-----~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~m 136 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLE-----LEIVGNVDNGISAASWSPDEELLALITGRQTLLFM 136 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccc-----eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEE
Confidence 56667776666667777788888887654321 22334456789999999999999999998888764
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.11 E-value=4.5 Score=38.49 Aligned_cols=75 Identities=11% Similarity=0.142 Sum_probs=52.8
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEc---------CCCceEEEe-----------cccccceeEEEEeCCC---CEEE
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNY---------RKGSALAIL-----------KYHHATCNAVSFSSDC---KLMA 365 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~---------~~~~~~~~~-----------~~h~~~v~~v~~spd~---~~la 365 (383)
.|..+..+|.|..++-.|.+|-+.++-. ++++...+. +.-.-.+..++|+|+. .+|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3667788999999999999997665431 234332111 1122246778899986 5888
Q ss_pred EEeCCCcEEEEeCCCCCC
Q 016769 366 SASEDSTVALWELYPPHA 383 (383)
Q Consensus 366 s~s~d~~i~~w~~~~~~~ 383 (383)
.-+.|++||+||++.|++
T Consensus 185 iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEecCcEEEEEecCCcch
Confidence 889999999999987763
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.48 E-value=13 Score=33.69 Aligned_cols=179 Identities=13% Similarity=0.162 Sum_probs=99.2
Q ss_pred ceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeee--
Q 016769 181 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-- 258 (383)
Q Consensus 181 ~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~-- 258 (383)
..|.+-|++.++.+..+.-+ + |..+.+ .... .+.+-+.||++.-..+...+.......
T Consensus 118 ~SVtVVDl~~~kvv~ei~~P-----------G---C~~iyP---~~~~---~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~ 177 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTP-----------G---CWLIYP---SGNR---GFSMLCGDGSLLTVTLDADGKEAQKSTKV 177 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGT-----------S---EEEEEE---EETT---EEEEEETTSCEEEEEETSTSSEEEEEEEE
T ss_pred CeEEEEECCCCceeeeecCC-----------C---EEEEEe---cCCC---ceEEEecCCceEEEEECCCCCEeEeeccc
Confidence 46888888888776655421 1 222222 2111 245667799999998876554322211
Q ss_pred --ccccCeEE-EEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee--------cCCCCeEEEEECCC-CcEEEEEe
Q 016769 259 --VHLEPVLC-LSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN--------LERPGISGTSIRPD-SKIAATAG 326 (383)
Q Consensus 259 --~h~~~v~~-~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~--------~~~~~i~~~~~~p~-~~~l~s~~ 326 (383)
...+++.. -.+...+..++--+..|.|+--|+....-.......+. ...++-.-+++++. +++++...
T Consensus 178 F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh 257 (342)
T PF06433_consen 178 FDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMH 257 (342)
T ss_dssp SSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEE
T ss_pred cCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEec
Confidence 11223321 12233333444457788888777765432222111110 00122334777754 44443332
Q ss_pred C--CC-------cEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEE-eCCCcEEEEeCCC
Q 016769 327 W--DR-------RVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASA-SEDSTVALWELYP 380 (383)
Q Consensus 327 ~--dg-------~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~-s~d~~i~~w~~~~ 380 (383)
. ++ .|-++|+.+++.+.++.. +.++.+|+.+.|.+ +|.+. ..++.+.+||...
T Consensus 258 ~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 258 QGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp E--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred CCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 2 11 577789999999988863 34688999998877 66554 4579999999853
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.61 Score=43.10 Aligned_cols=89 Identities=18% Similarity=0.217 Sum_probs=52.0
Q ss_pred CcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEE-Eecc------------c-
Q 016769 283 QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA-ILKY------------H- 348 (383)
Q Consensus 283 ~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~------------h- 348 (383)
+.+.++|++...... +......+....++|+|+.+|-. .++.|.++++.++.... +..+ +
T Consensus 23 ~~y~i~d~~~~~~~~-----l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvye 96 (353)
T PF00930_consen 23 GDYYIYDIETGEITP-----LTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYE 96 (353)
T ss_dssp EEEEEEETTTTEEEE-----SS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHH
T ss_pred eeEEEEecCCCceEE-----CcCCccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceecc
Confidence 347788887643211 11113457788999999998865 47889999987764432 2222 0
Q ss_pred ---ccceeEEEEeCCCCEEEEEeCC-CcEEEEe
Q 016769 349 ---HATCNAVSFSSDCKLMASASED-STVALWE 377 (383)
Q Consensus 349 ---~~~v~~v~~spd~~~las~s~d-~~i~~w~ 377 (383)
-+.-..+-||||+++||....| ..|+.+.
T Consensus 97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred ccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence 1122567799999988875544 4444443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.05 E-value=6 Score=33.70 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=45.6
Q ss_pred EEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCC--CEEEEEeCC
Q 016769 311 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDC--KLMASASED 370 (383)
Q Consensus 311 ~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~--~~las~s~d 370 (383)
-++++..+|+..++.-..++|..+|..+|+.+..++--...|.|++|--.+ -+.+|+.++
T Consensus 215 DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 215 DGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred CcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhc
Confidence 345666688888888888999999999999999888778899999996331 244555443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=89.71 E-value=6.5 Score=34.02 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=46.8
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCceEEEeccccccee-EEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 318 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN-AVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 318 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
-|.+++.|+..|.+++.+..+|.++..+..-. .|. .....+++..+-.|+.|++.+.-|.+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~ 123 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPK 123 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEeccc
Confidence 45679999999999999999998887664322 232 22356789999999999998877654
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=89.22 E-value=2.4 Score=39.77 Aligned_cols=71 Identities=15% Similarity=0.270 Sum_probs=53.0
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccc-eeEEEE-eCCC----------------C-EEEEEeC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT-CNAVSF-SSDC----------------K-LMASASE 369 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~v~~-spd~----------------~-~las~s~ 369 (383)
.+.++.++|++++.|+...=|+|.++|+.++..+..++|..+. +.-+.. .+.. . +++-+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 3678999999999999999999999999999988888887653 221111 1111 1 3456888
Q ss_pred CCcEEEEeCC
Q 016769 370 DSTVALWELY 379 (383)
Q Consensus 370 d~~i~~w~~~ 379 (383)
-|.|.||.+.
T Consensus 389 Rg~lEvW~~~ 398 (415)
T PF14655_consen 389 RGILEVWSMR 398 (415)
T ss_pred CCeEEEEecC
Confidence 9999999984
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=88.92 E-value=1.2 Score=41.13 Aligned_cols=50 Identities=22% Similarity=0.269 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 328 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 328 dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.+.+.++|+.+++... +......+....|||||+.+|... ++.|.++++.
T Consensus 22 ~~~y~i~d~~~~~~~~-l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~ 71 (353)
T PF00930_consen 22 KGDYYIYDIETGEITP-LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA 71 (353)
T ss_dssp EEEEEEEETTTTEEEE-SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred ceeEEEEecCCCceEE-CcCCccccccceeecCCCeeEEEe-cCceEEEECC
Confidence 4578899999876543 332356788899999999999886 5678888763
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=88.63 E-value=4.8 Score=37.86 Aligned_cols=91 Identities=13% Similarity=0.109 Sum_probs=55.5
Q ss_pred CCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCC-----------
Q 016769 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG----------- 75 (383)
Q Consensus 7 ~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 75 (383)
|......|......+.+|+.+|.+++.|..-.=|+|.|+|+.++..+...++-..+.............
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 334455677888889999999999887776555999999998766554433322221111111111000
Q ss_pred --ccee--EecccCCeEEEeecCCCC
Q 016769 76 --LNKV--ISQGRDGTVKCWDIENGG 97 (383)
Q Consensus 76 --~~~l--~s~~~D~ti~~Wd~~~~~ 97 (383)
...+ +=+-..|.|-+|.+.+|.
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCC
Confidence 0112 236677899999998763
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=88.32 E-value=21 Score=33.06 Aligned_cols=72 Identities=22% Similarity=0.261 Sum_probs=37.2
Q ss_pred eEEEEECCCCcEEEEEeCCC----------------cEEEEEcCCCceEE---------Eeccccc-ceeEEEEeCCCCE
Q 016769 310 ISGTSIRPDSKIAATAGWDR----------------RVRIYNYRKGSALA---------ILKYHHA-TCNAVSFSSDCKL 363 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~dg----------------~i~iwd~~~~~~~~---------~~~~h~~-~v~~v~~spd~~~ 363 (383)
..-+-.++|+++++-=+.|. .|+++++..++... .+.+|.. .=-...|||||++
T Consensus 285 ~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~ 364 (386)
T PF14583_consen 285 CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKW 364 (386)
T ss_dssp EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSE
T ss_pred eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCE
Confidence 45566789999876544442 56678887765432 1111111 1133579999995
Q ss_pred -EEEEeCCCcEEEEeCCCC
Q 016769 364 -MASASEDSTVALWELYPP 381 (383)
Q Consensus 364 -las~s~d~~i~~w~~~~~ 381 (383)
|.++...|...||-+.-|
T Consensus 365 VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 365 VLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp EEEEE-TTSS-EEEEEE--
T ss_pred EEEECCCCCCccEEEEeCc
Confidence 556777888888765444
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=88.03 E-value=1.6 Score=26.20 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=24.5
Q ss_pred CceeeEEEeCCC---CeEEEecCCCeEEEeeCcc
Q 016769 19 ASVTDVCFHQTK---PILFAGTTGGELRIWDTVQ 49 (383)
Q Consensus 19 ~~V~~v~f~~~~---~~L~sgs~D~~v~vW~~~~ 49 (383)
+.|+++.|+|+. ++|+-.-.-+.|-|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999999854 4777766668999999864
|
It contains a characteristic DLL sequence motif. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=88.03 E-value=7.8 Score=36.33 Aligned_cols=99 Identities=10% Similarity=0.140 Sum_probs=46.9
Q ss_pred cCCcEEEEEccCCCCeeEEeeeeecCCC--CeEEEEEC--CCCcE-EEEEeCCCcEEEEEc-CCCc----eEEEeccc--
Q 016769 281 ADQKIVLYNLDHSTGSCVIKKEINLERP--GISGTSIR--PDSKI-AATAGWDRRVRIYNY-RKGS----ALAILKYH-- 348 (383)
Q Consensus 281 ~d~~i~~wdl~~~~~~~~~~~~~~~~~~--~i~~~~~~--p~~~~-l~s~~~dg~i~iwd~-~~~~----~~~~~~~h-- 348 (383)
..+++.+||+.... .. +.+..... -.-.+.|- |+..+ ++.+-...+|..|-- +.++ .+..+..-
T Consensus 220 yG~~l~vWD~~~r~--~~--Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v 295 (461)
T PF05694_consen 220 YGHSLHVWDWSTRK--LL--QTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV 295 (461)
T ss_dssp S--EEEEEETTTTE--EE--EEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred ccCeEEEEECCCCc--Ee--eEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence 45779999997543 22 22332222 23456664 44433 332334555555544 3331 12222110
Q ss_pred ---------------ccceeEEEEeCCCCE-EEEEeCCCcEEEEeCCCCCC
Q 016769 349 ---------------HATCNAVSFSSDCKL-MASASEDSTVALWELYPPHA 383 (383)
Q Consensus 349 ---------------~~~v~~v~~spd~~~-las~s~d~~i~~w~~~~~~~ 383 (383)
..-|..|.+|.|.++ .++.-.+|.|+-||++||++
T Consensus 296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 234788999999995 57888999999999999874
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=87.97 E-value=3 Score=24.20 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=18.6
Q ss_pred cccceeEEEEeCCCCEEEEEe-CC--CcEEEE
Q 016769 348 HHATCNAVSFSSDCKLMASAS-ED--STVALW 376 (383)
Q Consensus 348 h~~~v~~v~~spd~~~las~s-~d--~~i~~w 376 (383)
....-...+|||||++|+..+ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 444566778999999776544 44 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.94 E-value=23 Score=33.07 Aligned_cols=138 Identities=13% Similarity=0.163 Sum_probs=80.1
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEc---CCcEEEEEccCCCCeeEEeeeeecCCCC
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA---DQKIVLYNLDHSTGSCVIKKEINLERPG 309 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~---d~~i~~wdl~~~~~~~~~~~~~~~~~~~ 309 (383)
.+....++.|.+.|...... +....... ....+.+++++..+..+.. ++++.+.| ..+...... ......
T Consensus 89 yv~~~~~~~v~vid~~~~~~-~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid--~~t~~~~~~--~~vG~~- 161 (381)
T COG3391 89 YVTTGDSNTVSVIDTATNTV-LGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVID--AATNKVTAT--IPVGNT- 161 (381)
T ss_pred EEecCCCCeEEEEcCcccce-eeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEe--CCCCeEEEE--EecCCC-
Confidence 34455578899999765432 23222222 4456788888877665544 45555554 334433332 222222
Q ss_pred eEEEEECCCCcEEEEE-eCCCcEEEEEcCCCceEE-E----ecccccceeEEEEeCCCCEEE-EEeCC--CcEEEEeC
Q 016769 310 ISGTSIRPDSKIAATA-GWDRRVRIYNYRKGSALA-I----LKYHHATCNAVSFSSDCKLMA-SASED--STVALWEL 378 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~-~~dg~i~iwd~~~~~~~~-~----~~~h~~~v~~v~~spd~~~la-s~s~d--~~i~~w~~ 378 (383)
-..++++|+++.+..+ ..+++|.++|........ . .. -......++++|||+++- +-..+ +.+...|.
T Consensus 162 P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~ 238 (381)
T COG3391 162 PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDT 238 (381)
T ss_pred cceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeC
Confidence 2789999999955444 479999999976554442 1 21 122346678999998443 32222 46666655
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=87.73 E-value=23 Score=35.31 Aligned_cols=92 Identities=13% Similarity=0.284 Sum_probs=58.6
Q ss_pred cCCcEEEEEccCCCCeeEEeeeee-cCCCCeEEEEE--CCCCcEEEEEeCCCcEEEEEcCC------C---ceEEE--ec
Q 016769 281 ADQKIVLYNLDHSTGSCVIKKEIN-LERPGISGTSI--RPDSKIAATAGWDRRVRIYNYRK------G---SALAI--LK 346 (383)
Q Consensus 281 ~d~~i~~wdl~~~~~~~~~~~~~~-~~~~~i~~~~~--~p~~~~l~s~~~dg~i~iwd~~~------~---~~~~~--~~ 346 (383)
....+.|||.+... +..+.. ...+.|..+.| .|+++.+++-|....|.++--.. + .++.. +.
T Consensus 49 ~~~~LtIWD~~~~~----lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~ 124 (631)
T PF12234_consen 49 SRSELTIWDTRSGV----LEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDIS 124 (631)
T ss_pred CCCEEEEEEcCCcE----EEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEee
Confidence 34458899986432 222222 23456777776 58999999999999999985421 1 12222 23
Q ss_pred ccc-cceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 347 YHH-ATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 347 ~h~-~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
.|. .+|.+..|-+||..++.++ +.+.|++=
T Consensus 125 ~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 125 SHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 444 5789999999986655443 45677654
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.55 E-value=25 Score=32.91 Aligned_cols=191 Identities=16% Similarity=0.112 Sum_probs=107.5
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEe--CCCcEEE
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILV 244 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~--~dg~i~~ 244 (383)
+.+++.++.. ...+.|.+.|+++........-...+ ..+ .+.+. +....++-. .++++-+
T Consensus 83 ~~~~~vyv~~-~~~~~v~vid~~~~~~~~~~~vG~~P---------~~~-----~~~~~---~~~vYV~n~~~~~~~vsv 144 (381)
T COG3391 83 PAGNKVYVTT-GDSNTVSVIDTATNTVLGSIPVGLGP---------VGL-----AVDPD---GKYVYVANAGNGNNTVSV 144 (381)
T ss_pred CCCCeEEEec-CCCCeEEEEcCcccceeeEeeeccCC---------ceE-----EECCC---CCEEEEEecccCCceEEE
Confidence 4444444433 33578999998777765544321111 111 11111 112233333 4678888
Q ss_pred EeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCCeeEEeee-eecCCCCeEEEEECCCCcEE
Q 016769 245 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKE-INLERPGISGTSIRPDSKIA 322 (383)
Q Consensus 245 wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l 322 (383)
.|-.+... +.....-..| ..+.+++++..++... .++++.+.|.+...... -... ..........+.++|+++++
T Consensus 145 id~~t~~~-~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~ 221 (381)
T COG3391 145 IDAATNKV-TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRV 221 (381)
T ss_pred EeCCCCeE-EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEE
Confidence 88665433 3334333345 7889999998665554 68889999865432110 0000 01112345678999999865
Q ss_pred EEEeCC---CcEEEEEcCCCceEEEeccccc-ceeEEEEeCCCCEEEEE-eCCCcEEEEeC
Q 016769 323 ATAGWD---RRVRIYNYRKGSALAILKYHHA-TCNAVSFSSDCKLMASA-SEDSTVALWEL 378 (383)
Q Consensus 323 ~s~~~d---g~i~iwd~~~~~~~~~~~~h~~-~v~~v~~spd~~~las~-s~d~~i~~w~~ 378 (383)
...-.. +++...|..++........-.. ....++++|+|+.+-.. +..+.+.+-|.
T Consensus 222 yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 222 YVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred EEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 554443 5899999988877654211111 45667899999966555 33466666654
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=87.45 E-value=29 Score=33.67 Aligned_cols=96 Identities=4% Similarity=0.001 Sum_probs=54.6
Q ss_pred ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEE-----------------EeCCCcEEEEEcC
Q 016769 275 GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT-----------------AGWDRRVRIYNYR 337 (383)
Q Consensus 275 ~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s-----------------~~~dg~i~iwd~~ 337 (383)
.++.++.+|.+...|.++. ..+...... ...++.+| +..++. ...+|.+.-.|+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG--~~~W~~~~~-----~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTG--KLISARPEV-----EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred EEEEECCCceEEEEECCCC--cEeeEeEee-----ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 3566778888877776543 443332221 11233344 222221 1246788889999
Q ss_pred CCceEEEeccc--c------cce--eEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 338 KGSALAILKYH--H------ATC--NAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 338 ~~~~~~~~~~h--~------~~v--~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+++.+...... . .+. ..+. -.+..|..++.||.++.+|...
T Consensus 375 tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 375 TGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred CCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCC
Confidence 99988765422 1 111 1122 2456788889999999888754
|
The alignment model contains an 8-bladed beta-propeller. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=87.33 E-value=3.6 Score=24.09 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=22.2
Q ss_pred CCCcEEEEEe-CCCcEEEEEcCCCceEEEecc
Q 016769 317 PDSKIAATAG-WDRRVRIYNYRKGSALAILKY 347 (383)
Q Consensus 317 p~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 347 (383)
|+++++.++. .+++|.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4666555444 588999999988887766653
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.26 E-value=19 Score=31.29 Aligned_cols=108 Identities=12% Similarity=0.047 Sum_probs=62.1
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
.++.|+-.+.++--|..++... ..+.-...+.+-+.- -++.++.|+..+.+.+-+.+..+.-..+ .. .+.-+ .
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~--We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f--~~-~~~vk-~ 97 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLI--WEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNF--VI-LETVK-V 97 (354)
T ss_pred EEEEecCCceEEEecCCCCcEE--eehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeee--ee-hhhhc-c
Confidence 4566777777777776664311 111011122111111 2345678888888888776644321111 11 11101 1
Q ss_pred EEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEec
Q 016769 312 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK 346 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 346 (383)
.....+++..+.+|+.|++.+..|..+...++..+
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 23456789999999999999999999887776543
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=86.30 E-value=2.6 Score=25.33 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=24.7
Q ss_pred ceeEEEEeCCC---CEEEEEeCCCcEEEEeCC
Q 016769 351 TCNAVSFSSDC---KLMASASEDSTVALWELY 379 (383)
Q Consensus 351 ~v~~v~~spd~---~~las~s~d~~i~~w~~~ 379 (383)
.|-++.|||+. .+||.+=.-+.|.|+|+.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 57789999854 489999999999999986
|
It contains a characteristic DLL sequence motif. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.06 E-value=23 Score=33.35 Aligned_cols=102 Identities=10% Similarity=0.059 Sum_probs=66.4
Q ss_pred ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCC
Q 016769 259 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 338 (383)
Q Consensus 259 ~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~ 338 (383)
...++|.++.|+++.+.++.--.+++|.+++....+........-+.....|-++.|+.+ .-+|--+..| +-+|-...
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 345689999999999989999999999999874332211111111222335778888755 4455555444 66676644
Q ss_pred C-ceEEEecccccceeEEEEeCCCC
Q 016769 339 G-SALAILKYHHATCNAVSFSSDCK 362 (383)
Q Consensus 339 ~-~~~~~~~~h~~~v~~v~~spd~~ 362 (383)
. +.+...+.|...|+--+|.|+-+
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccc
Confidence 2 33445567788888888999877
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=85.72 E-value=18 Score=36.03 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=47.7
Q ss_pred eEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEec-ccccceeEEEEe--CCCCEEEEEeCCCcEEEEe
Q 016769 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK-YHHATCNAVSFS--SDCKLMASASEDSTVALWE 377 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~s--pd~~~las~s~d~~i~~w~ 377 (383)
..-+.-+.-++..+.-+...++.|||...+.....-. ...+.|.++.|. ||++.+.+.+..+.|.++-
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3334444455555555566789999998877543222 346789999884 8999888888899888873
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=84.75 E-value=22 Score=33.01 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=39.6
Q ss_pred CCeEEEEECCCCcEEEEEeCC-------------------CcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEe
Q 016769 308 PGISGTSIRPDSKIAATAGWD-------------------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368 (383)
Q Consensus 308 ~~i~~~~~~p~~~~l~s~~~d-------------------g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s 368 (383)
...+.+.+.|||.+.++-+.. +.|..+|.+.++. ..+.......+.++|+|+|+++++-.
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 347789999999876655421 4566666655443 33332234467899999999887654
Q ss_pred CC
Q 016769 369 ED 370 (383)
Q Consensus 369 ~d 370 (383)
.+
T Consensus 203 ~~ 204 (367)
T TIGR02604 203 DD 204 (367)
T ss_pred CC
Confidence 33
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=84.32 E-value=14 Score=33.22 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=37.4
Q ss_pred CCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 308 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 308 ~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
..+..+..++||++++.+..-....-||--...-...-+.-.+.|.++.|+||+.+...+ +.|.|++=+
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 567788888999988876544444566653221111222345789999999998865544 777776544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.75 E-value=17 Score=31.12 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=41.8
Q ss_pred CCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEeccccc-c-------eeEEEEeCCCC-EEEEEeCCCcEEEEeC
Q 016769 308 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA-T-------CNAVSFSSDCK-LMASASEDSTVALWEL 378 (383)
Q Consensus 308 ~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-~-------v~~v~~spd~~-~las~s~d~~i~~w~~ 378 (383)
...+.-.++|+|+|++ |.....=..+....+..+.-+.+|+- . -+.++|+.|.+ +...-|.+-.|.-||.
T Consensus 109 nR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred cccccCccCCCCceee-eeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 3455666889999854 33211111222233343333334432 1 26678887777 5677888888988986
Q ss_pred CCC
Q 016769 379 YPP 381 (383)
Q Consensus 379 ~~~ 381 (383)
.-|
T Consensus 188 d~~ 190 (310)
T KOG4499|consen 188 DCP 190 (310)
T ss_pred CCC
Confidence 544
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=83.26 E-value=8.3 Score=31.47 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=24.3
Q ss_pred ceeEEEEeCCC-----C-EEEEEeCCCcEEEEeCC
Q 016769 351 TCNAVSFSSDC-----K-LMASASEDSTVALWELY 379 (383)
Q Consensus 351 ~v~~v~~spd~-----~-~las~s~d~~i~~w~~~ 379 (383)
.+.+++|||-| + +||.-..++.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999943 3 89999999999999753
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.15 E-value=23 Score=35.06 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=34.9
Q ss_pred CCcEEEEEeCCC------cEEEEEcCC-Cc--eEEEecccccceeEEEEeCCCCEEEEEeCCC--cEEEEeC
Q 016769 318 DSKIAATAGWDR------RVRIYNYRK-GS--ALAILKYHHATCNAVSFSSDCKLMASASEDS--TVALWEL 378 (383)
Q Consensus 318 ~~~~l~s~~~dg------~i~iwd~~~-~~--~~~~~~~h~~~v~~v~~spd~~~las~s~d~--~i~~w~~ 378 (383)
+++..+.|+.++ .+..||.++ .+ .+..+.........+.+ +|++.+.|+.|+ .+..||.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCc
Confidence 566677777652 467788876 32 23333322222333333 789999999998 5555554
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=83.13 E-value=13 Score=34.44 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=32.6
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEE-EcCC-----Cc--eE-EEecc----cccceeEEEEeCCCCEEEEEe
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIY-NYRK-----GS--AL-AILKY----HHATCNAVSFSSDCKLMASAS 368 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iw-d~~~-----~~--~~-~~~~~----h~~~v~~v~~spd~~~las~s 368 (383)
...++++.+++ .++ ++.. .|..| |.+. ++ .+ ..+.. +....+.++|.|||++.++-+
T Consensus 73 ~p~Gi~~~~~G-lyV-~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 73 MVTGLAVAVGG-VYV-ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CccceeEecCC-EEE-eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 45788898888 544 3444 34444 4421 12 12 22222 244578899999999766544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=82.81 E-value=33 Score=31.33 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=55.2
Q ss_pred eEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee---eecCCCCeEEEEECCC----CcEEEEEeCC--------
Q 016769 264 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE---INLERPGISGTSIRPD----SKIAATAGWD-------- 328 (383)
Q Consensus 264 v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~---~~~~~~~i~~~~~~p~----~~~l~s~~~d-------- 328 (383)
.+.|++.|++.. +.+-..|.|.+++.+ ......+... ......+...++|+|+ +.+.++.+..
T Consensus 4 P~~~a~~pdG~l-~v~e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRL-LVAERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCE-EEEETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcE-EEEeCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 457888888754 555679999998832 2211111111 1123456889999995 4444444422
Q ss_pred CcEEEEEcCCC-------ceE-EEecc---cccceeEEEEeCCCCEEEEEeCCC
Q 016769 329 RRVRIYNYRKG-------SAL-AILKY---HHATCNAVSFSSDCKLMASASEDS 371 (383)
Q Consensus 329 g~i~iwd~~~~-------~~~-~~~~~---h~~~v~~v~~spd~~~las~s~d~ 371 (383)
.+|.-|....+ +.+ ..+.. .......++|.|||.++++.+..+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 24555555433 111 11111 233456799999998777666554
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=82.52 E-value=11 Score=37.22 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=27.7
Q ss_pred eEEEEECC----CCcEEEEEeCCCcEEEEEcCCCceEEEe
Q 016769 310 ISGTSIRP----DSKIAATAGWDRRVRIYNYRKGSALAIL 345 (383)
Q Consensus 310 i~~~~~~p----~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 345 (383)
....++++ +..++++-+.|+++|+||+.+++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 45566666 6789999999999999999999885543
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=82.33 E-value=18 Score=36.50 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=68.4
Q ss_pred CceEEEEcCCcEEEEEccC-------C-------CCeeEEeeee-ecCCCCeEEEEEC--CCCcEEEEEeCCCcEEEEEc
Q 016769 274 NGGISGGADQKIVLYNLDH-------S-------TGSCVIKKEI-NLERPGISGTSIR--PDSKIAATAGWDRRVRIYNY 336 (383)
Q Consensus 274 ~~~~s~~~d~~i~~wdl~~-------~-------~~~~~~~~~~-~~~~~~i~~~~~~--p~~~~l~s~~~dg~i~iwd~ 336 (383)
..|+.|..||.|.+|..+. . ..+...+..+ .....++++++++ ...++||+++....|.||-.
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 3567888999999997521 0 0000000111 1123478899998 88889999999998888865
Q ss_pred CC--CceEEE-ecccccceeEEEEeCCC-----C-EEEEEeCCCcEEEEeC
Q 016769 337 RK--GSALAI-LKYHHATCNAVSFSSDC-----K-LMASASEDSTVALWEL 378 (383)
Q Consensus 337 ~~--~~~~~~-~~~h~~~v~~v~~spd~-----~-~las~s~d~~i~~w~~ 378 (383)
.. .+.... -..|...|-+|+|-++. . +|++++-.|.+-+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 43 221111 11256678899997643 2 8999999999988877
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=81.67 E-value=40 Score=30.37 Aligned_cols=106 Identities=4% Similarity=-0.015 Sum_probs=55.7
Q ss_pred ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCc
Q 016769 261 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 340 (383)
Q Consensus 261 ~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~ 340 (383)
...+..+...+++.+++++...+...-||-... ............+..+.|.|++...+ ....|.|+.=+.. .
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~----~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~--~ 216 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT----TWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDP--D 216 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S----S-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-T--T
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCc----cceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCC--C
Confidence 356677777888887766655555667763321 12222223346799999999987655 4488888876621 1
Q ss_pred eEEEecc-------cccceeEEEEeCCCCEEEEEeCCCcE
Q 016769 341 ALAILKY-------HHATCNAVSFSSDCKLMASASEDSTV 373 (383)
Q Consensus 341 ~~~~~~~-------h~~~v~~v~~spd~~~las~s~d~~i 373 (383)
....+.. -.-.+..++|.|++...|+|+....+
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence 1222222 12237899999998888877765433
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=81.60 E-value=23 Score=31.05 Aligned_cols=102 Identities=13% Similarity=0.209 Sum_probs=57.3
Q ss_pred CCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEe------
Q 016769 272 SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL------ 345 (383)
Q Consensus 272 ~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~------ 345 (383)
.++.++.|..+| +.++++......... . ....|..+.+-|+-+.+++= .|++++++++........-
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i---~--~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI---L--KLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE---e--ecceEEEEEEecccCEEEEE-cCCccEEEEchhhcccccccccccc
Confidence 456778887777 888888322211111 1 12348889888877765554 3699999999764433210
Q ss_pred --------cccccceeEEE--EeCCC-CEEEEEeCCCcEEEEeCCCC
Q 016769 346 --------KYHHATCNAVS--FSSDC-KLMASASEDSTVALWELYPP 381 (383)
Q Consensus 346 --------~~h~~~v~~v~--~spd~-~~las~s~d~~i~~w~~~~~ 381 (383)
....+.+...+ =...+ ..|+.+.. ..|.+|.+.++
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~ 124 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDP 124 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEEC-CEEEEEEEECC
Confidence 01122333333 01233 35555544 48888887654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=80.79 E-value=52 Score=31.16 Aligned_cols=143 Identities=13% Similarity=0.196 Sum_probs=82.4
Q ss_pred EEEEEeCCCcEEEEeCCCCC-Cc--eeeeeccccCeEEEEEeC----CCCceEEEEcCCcEEEEEccCCCCe------eE
Q 016769 232 NVLAGYEDGSILVWDIRNPG-IP--LTAMKVHLEPVLCLSIDE----SCNGGISGGADQKIVLYNLDHSTGS------CV 298 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~-~~--~~~~~~h~~~v~~~~~~~----~~~~~~s~~~d~~i~~wdl~~~~~~------~~ 298 (383)
.++.|+..|.++||+..... .+ +..-..-..||..+.... .....++.=.-+.+.+|.+....+. ..
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~ 118 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQ 118 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEE
Confidence 58889999999999985432 11 111122346888777632 1112223334456677777433222 11
Q ss_pred Eee--eeecCCCCeEEEEECC----C-CcEEEEEeCCCcEEEEEcCCCceEEEecc--cccceeEEEEeCCCCEEEEEeC
Q 016769 299 IKK--EINLERPGISGTSIRP----D-SKIAATAGWDRRVRIYNYRKGSALAILKY--HHATCNAVSFSSDCKLMASASE 369 (383)
Q Consensus 299 ~~~--~~~~~~~~i~~~~~~p----~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~v~~spd~~~las~s~ 369 (383)
+.. +.... .....+..-| . ..++..=+.||++.+|+-+.-.....+.. ++++ +.++|.-..+++++.
T Consensus 119 L~~~yeh~l~-~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgP---l~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 119 LELIYEHSLQ-RTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGP---LCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEecc-cceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcC---eEEeecCCEEEEecC
Confidence 111 11111 1223333322 2 34677788999999999876543333332 3444 568888788999999
Q ss_pred CCcEEEEeC
Q 016769 370 DSTVALWEL 378 (383)
Q Consensus 370 d~~i~~w~~ 378 (383)
+..+..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 988888864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 383 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-08 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-06 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 7e-08 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 8e-08 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-07 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-07 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-07 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 5e-07 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-06 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 4e-06 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 7e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 9e-06 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 9e-06 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 9e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 2e-05 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 4e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-05 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 6e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 7e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 8e-05 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 1e-04 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 1e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-04 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 1e-04 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 2e-04 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-04 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-04 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-04 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 4e-04 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 5e-04 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 6e-04 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 6e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 7e-04 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 7e-04 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 7e-04 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 7e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 383 | |||
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.98 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.98 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.98 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.98 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.98 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.97 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.97 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.96 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.96 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.96 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.96 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.95 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.95 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.94 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.94 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.94 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.94 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.94 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.94 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.93 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.93 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.93 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.93 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.93 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.93 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.92 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.91 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.9 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.9 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.9 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.9 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.89 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.89 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.89 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.89 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.87 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.87 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.86 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.86 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.83 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.83 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.83 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.82 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.81 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.8 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.8 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.8 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.78 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.76 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.75 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.75 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.75 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.75 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.74 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.72 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.71 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.71 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.7 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.7 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.7 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.69 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.69 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.69 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.66 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.66 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.65 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.61 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.6 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.57 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.57 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.54 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.53 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.51 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.51 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.5 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.44 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.43 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.43 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.37 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.31 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.3 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.3 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.28 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.25 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.24 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.2 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.2 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.18 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.18 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.14 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.14 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.12 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.12 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.11 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.11 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.1 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.07 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.06 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.01 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.0 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.0 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.0 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.95 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.92 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.9 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.89 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.86 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.82 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.82 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.8 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.8 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.79 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.78 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.78 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.77 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.77 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.75 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.71 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.6 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.57 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.56 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.53 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.53 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.53 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.49 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.46 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.45 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.44 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.44 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.42 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.4 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.39 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.37 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.37 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.36 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.34 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.29 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.18 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.17 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.14 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.07 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.92 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.9 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.9 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.79 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.75 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.75 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.61 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.6 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.39 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.29 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.29 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.19 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.17 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.16 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.0 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.96 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.94 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.93 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.91 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.9 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.89 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.74 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.62 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.59 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 96.56 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.55 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.48 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.37 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.26 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.08 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.07 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.03 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 95.99 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.97 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 95.92 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 95.84 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 95.77 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.68 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 95.6 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 95.59 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 95.58 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 95.44 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 95.41 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.27 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 95.23 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.12 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 95.08 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 94.92 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 94.83 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 94.69 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 94.66 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 94.62 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 94.61 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 94.41 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 94.1 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 93.91 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 93.56 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 93.43 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 93.18 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 92.87 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 92.86 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 92.42 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 92.16 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 92.08 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 90.78 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 90.72 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 90.1 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 90.05 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 89.6 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 89.37 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 89.1 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 89.04 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 88.18 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 87.5 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 85.3 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 84.78 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 82.84 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 82.37 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 81.65 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 81.08 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 80.86 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 80.38 |
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-42 Score=313.49 Aligned_cols=296 Identities=18% Similarity=0.263 Sum_probs=226.0
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
.++..+|+||.+.|++++|+|++++|+|||.|++|++||..+++.+..+..|. ..+.+++++| ++..+++++.|++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--~~v~~~~~s~--~~~~l~s~~~d~~ 120 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAYAP--SGNYVACGGLDNI 120 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS--SCEEEEEECT--TSSEEEEEETTCE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCC--ccEEEEEECC--CCCEEEEEeCCCe
Confidence 45567899999999999999999999999999999999998877766554443 4578889998 4689999999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
+++||+.+++... . .. ..+. ... ..+. ...+.+
T Consensus 121 v~iw~~~~~~~~~--~-~~---------~~~~-~h~---------~~v~-------------------------~~~~~~ 153 (340)
T 1got_B 121 CSIYNLKTREGNV--R-VS---------RELA-GHT---------GYLS-------------------------CCRFLD 153 (340)
T ss_dssp EEEEETTTCSBSC--E-EE---------EEEE-CCS---------SCEE-------------------------EEEEEE
T ss_pred EEEEECccCCCcc--e-eE---------EEec-CCC---------ccEE-------------------------EEEECC
Confidence 9999997653100 0 00 0000 000 0000 000112
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
++ . +++++.|++|++||+++++.+..+..+ .+.+.++ .+.|.. ..+++|+.|++|++||+
T Consensus 154 ~~-~--l~s~s~d~~i~~wd~~~~~~~~~~~~h----------~~~v~~~---~~~~~~----~~l~sg~~d~~v~~wd~ 213 (340)
T 1got_B 154 DN-Q--IVTSSGDTTCALWDIETGQQTTTFTGH----------TGDVMSL---SLAPDT----RLFVSGACDASAKLWDV 213 (340)
T ss_dssp TT-E--EEEEETTSCEEEEETTTTEEEEEECCC----------SSCEEEE---EECTTS----SEEEEEETTSCEEEEET
T ss_pred CC-c--EEEEECCCcEEEEECCCCcEEEEEcCC----------CCceEEE---EECCCC----CEEEEEeCCCcEEEEEC
Confidence 22 2 344566899999999998877766432 1222222 244432 36889999999999999
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 327 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~ 327 (383)
++. .+...+..|..+|.++.|+|++..+++++.|+.|++||++... .............+.+++|+|++++|++|+.
T Consensus 214 ~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 290 (340)
T 1got_B 214 REG-MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290 (340)
T ss_dssp TTC-SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCC-eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCCCCEEEEECC
Confidence 874 4567788999999999999999999999999999999997543 2222122222346999999999999999999
Q ss_pred CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 328 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 328 dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
|++|++||+.+++.+..+.+|...|.+++|+|||++|||||.|++|+|||
T Consensus 291 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999999999999999999999997
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-43 Score=324.63 Aligned_cols=316 Identities=13% Similarity=0.200 Sum_probs=229.8
Q ss_pred CCCCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEeccc
Q 016769 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (383)
Q Consensus 5 ~~~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (383)
|.......+|+||++.|++++|+|++++|+|||.|++|+|||..++++...+..|. ..+.+++++| ++..|++++.
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~--~~v~~~~~s~--~g~~las~~~ 128 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC--PWVMECAFAP--NGQSVACGGL 128 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC--TTCCCCEECT--TSSEEEECCS
T ss_pred cceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCC--CCEEEEEECC--CCCEEEEeeC
Confidence 34444567899999999999999999999999999999999998887776665554 3577888988 4789999999
Q ss_pred CCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 85 D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
|+++++||+.+............ ...+ +... .....
T Consensus 129 d~~v~iw~~~~~~~~~~~~~~~~--------------------~~~g--------------------h~~~----v~~~~ 164 (380)
T 3iz6_a 129 DSACSIFNLSSQADRDGNMPVSR--------------------VLTG--------------------HKGY----ASSCQ 164 (380)
T ss_dssp SSCCEEEECCCCSSCCCSSTTCC--------------------BCCC--------------------CSSC----CCCCB
T ss_pred CCcEEEEECCCCccccCCcccee--------------------eccC--------------------CCcc----eEEEE
Confidence 99999999975421100000000 0000 0000 00011
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEE
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~ 244 (383)
+.+++.. .+++|+.|++|++||+++++.+..+.... ...+.....++. +.+. +...+++|+.|++|++
T Consensus 165 ~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~~~-----~~~h~~~v~~~~---~~~~---~~~~l~sgs~D~~v~~ 232 (380)
T 3iz6_a 165 YVPDQET-RLITGSGDQTCVLWDVTTGQRISIFGSEF-----PSGHTADVLSLS---INSL---NANMFISGSCDTTVRL 232 (380)
T ss_dssp CCSSSSS-CEEEECTTSCEEEECTTTCCEEEEECCCS-----SSSCCSCEEEEE---ECSS---SCCEEEEEETTSCEEE
T ss_pred EecCCCC-EEEEECCCCcEEEEEcCCCcEEEEeeccc-----CCCCccCeEEEE---eecC---CCCEEEEEECCCeEEE
Confidence 2232222 34566778999999999998776653211 001112222222 2221 1236889999999999
Q ss_pred EeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeee---ecCCCCeEEEEECCCCcE
Q 016769 245 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI---NLERPGISGTSIRPDSKI 321 (383)
Q Consensus 245 wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~---~~~~~~i~~~~~~p~~~~ 321 (383)
||++....++..+.+|..+|.++.|+|++..+++++.|++|++||+........+.... ..+...+.+++|+|++++
T Consensus 233 wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 312 (380)
T 3iz6_a 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRL 312 (380)
T ss_dssp EETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSE
T ss_pred EECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCE
Confidence 99986566677888999999999999999999999999999999997543222111111 111224889999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceEEEe----cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 322 AATAGWDRRVRIYNYRKGSALAIL----KYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 322 l~s~~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+++|+.||+|++||+.+++.+..+ .+|...|.+++|+|||++|++||.|++|++|++..
T Consensus 313 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 313 LFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 999999999999999999887766 67999999999999999999999999999999863
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-41 Score=309.15 Aligned_cols=303 Identities=17% Similarity=0.237 Sum_probs=227.4
Q ss_pred CCCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccC
Q 016769 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
.+.++..+|.||++.|++|+|+|++++|+|||.|++|+|||..+++....+..|. ..+.+++++| ++..+++++.|
T Consensus 52 ~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~--~~v~~~~~sp--~g~~lasg~~d 127 (354)
T 2pbi_B 52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC--TWVMACAYAP--SGCAIACGGLD 127 (354)
T ss_dssp CCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS--SCCCEEEECT--TSSEEEEESTT
T ss_pred cccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCC--CCEEEEEECC--CCCEEEEeeCC
Confidence 4455677899999999999999999999999999999999988776655544332 4578889998 46899999999
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
+++++|++.......... .. ..+..... ......+
T Consensus 128 ~~i~v~~~~~~~~~~~~~-~~-------~~~~~h~~-------------------------------------~v~~~~~ 162 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENMAA-KK-------KSVAMHTN-------------------------------------YLSACSF 162 (354)
T ss_dssp SEEEEEECCCCTTCCSGG-GC-------EEEEECSS-------------------------------------CEEEEEE
T ss_pred CCEEEEEEeccccccccc-cc-------eeeeccCC-------------------------------------cEEEEEE
Confidence 999999986542110000 00 00000000 0000112
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEE
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~w 245 (383)
.+++. . +++++.|++|++||+++++.+..+..+ .....++. +.|.. ....+++|+.||+|++|
T Consensus 163 ~~~~~-~-l~t~s~D~~v~lwd~~~~~~~~~~~~h----------~~~v~~~~---~~~~~--~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 163 TNSDM-Q-ILTASGDGTCALWDVESGQLLQSFHGH----------GADVLCLD---LAPSE--TGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp CSSSS-E-EEEEETTSEEEEEETTTCCEEEEEECC----------SSCEEEEE---ECCCS--SCCEEEEEETTSCEEEE
T ss_pred eCCCC-E-EEEEeCCCcEEEEeCCCCeEEEEEcCC----------CCCeEEEE---EEeCC--CCCEEEEEeCCCeEEEE
Confidence 23333 3 345567899999999999887776532 12223322 33321 12368899999999999
Q ss_pred eCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEE
Q 016769 246 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 325 (383)
Q Consensus 246 dl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~ 325 (383)
|+++. .++..+..|..+|.++.|+|++..+++++.|++|++||+..... ............+.+++|+|++++|++|
T Consensus 226 d~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~~g 302 (354)
T 2pbi_B 226 DMRSG-QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE--VAIYSKESIIFGASSVDFSLSGRLLFAG 302 (354)
T ss_dssp ETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred ECCCC-cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--EEEEcCCCcccceeEEEEeCCCCEEEEE
Confidence 99984 45777889999999999999999999999999999999975432 2111112223468899999999999999
Q ss_pred eCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 326 GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 326 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
+.|++|++||+.+++.+..+.+|...|.+++|+|||++||+|+.|++|++|+
T Consensus 303 ~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 303 YNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999999999999999999999999999999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=318.54 Aligned_cols=291 Identities=17% Similarity=0.286 Sum_probs=227.3
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
.....|.||+++|++++|+|++++|+|||.|++|+|||..+++....+..|. ..+.+++|.+ ++..|++|+.|++|
T Consensus 99 ~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~--~~V~~v~~~~--~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 99 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT--DSVQDISFDH--SGKLLASCSADMTI 174 (410)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS--SCEEEEEECT--TSSEEEEEETTSCC
T ss_pred CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccC--CcEEEEEEcC--CCCEEEEEeCCCeE
Confidence 3467899999999999999999999999999999999999887776665554 4578899988 46889999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++||++++++.. .+..+. .. .....+.++
T Consensus 175 ~iwd~~~~~~~~----~~~~h~----------------------~~-------------------------V~~v~~~p~ 203 (410)
T 1vyh_C 175 KLWDFQGFECIR----TMHGHD----------------------HN-------------------------VSSVSIMPN 203 (410)
T ss_dssp CEEETTSSCEEE----CCCCCS----------------------SC-------------------------EEEEEECSS
T ss_pred EEEeCCCCceeE----EEcCCC----------------------CC-------------------------EEEEEEeCC
Confidence 999997653211 000000 00 000112233
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
+. + +++|+.|++|++||++++.++..+..+. ....++ .+.++ ...+++|+.|++|++||++
T Consensus 204 ~~-~-l~s~s~D~~i~~wd~~~~~~~~~~~~h~----------~~v~~~---~~~~~----g~~l~s~s~D~~v~vwd~~ 264 (410)
T 1vyh_C 204 GD-H-IVSASRDKTIKMWEVQTGYCVKTFTGHR----------EWVRMV---RPNQD----GTLIASCSNDQTVRVWVVA 264 (410)
T ss_dssp SS-E-EEEEETTSEEEEEETTTCCEEEEEECCS----------SCEEEE---EECTT----SSEEEEEETTSCEEEEETT
T ss_pred CC-E-EEEEeCCCeEEEEECCCCcEEEEEeCCC----------ccEEEE---EECCC----CCEEEEEcCCCeEEEEECC
Confidence 33 3 4556778999999999998877665321 111121 23332 2368899999999999998
Q ss_pred CCCCceeeeeccccCeEEEEEeCC--------------------CCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC
Q 016769 249 NPGIPLTAMKVHLEPVLCLSIDES--------------------CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 249 ~~~~~~~~~~~h~~~v~~~~~~~~--------------------~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
+. .....+..|...|.++.|++. +..+++|+.|+.|++||+.... +. ..+..+..
T Consensus 265 ~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~--~~--~~~~~h~~ 339 (410)
T 1vyh_C 265 TK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CL--MTLVGHDN 339 (410)
T ss_dssp TC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--EE--EEEECCSS
T ss_pred CC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc--eE--EEEECCCC
Confidence 74 456678889999999999885 4568999999999999997543 22 23455677
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
.|.+++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+|++++||+||.|++|++|++
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999986
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=300.60 Aligned_cols=288 Identities=18% Similarity=0.313 Sum_probs=221.0
Q ss_pred eeeeecCCceeeEEEeCC----CCeEEEecCCCeEEEeeCcccccc--cccccccccceeeeeeecCCCCcceeEecccC
Q 016769 12 AVLRGHRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~----~~~L~sgs~D~~v~vW~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
..+++|.+.|++|+|+|+ +.+|+|||.|++|+||+....+.. ..+..|. ..+.++.+.+. +..+++++.|
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~--~~v~~~~~~~~--~~~l~s~s~D 101 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQ--LGVVSVDISHT--LPIAASSSLD 101 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECSS--SSEEEEEETT
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCC--CCEEEEEECCC--CCEEEEEeCC
Confidence 456799999999999875 569999999999999998665432 2233333 46788888873 5789999999
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
++|++||+++++... .+ ..... .+ ....+
T Consensus 102 ~~i~lWd~~~~~~~~----~~------------~~~~~----------~~-------------------------~~~~~ 130 (321)
T 3ow8_A 102 AHIRLWDLENGKQIK----SI------------DAGPV----------DA-------------------------WTLAF 130 (321)
T ss_dssp SEEEEEETTTTEEEE----EE------------ECCTT----------CC-------------------------CCEEE
T ss_pred CcEEEEECCCCCEEE----EE------------eCCCc----------cE-------------------------EEEEE
Confidence 999999998763210 00 00000 00 00123
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEE
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~w 245 (383)
+++++ + +++++.++.+++||+++++....+.... ....++ .+.|+. ..+++|+.|+.|++|
T Consensus 131 spdg~-~-l~~g~~dg~v~i~~~~~~~~~~~~~~~~----------~~v~~~---~~spdg----~~lasg~~dg~i~iw 191 (321)
T 3ow8_A 131 SPDSQ-Y-LATGTHVGKVNIFGVESGKKEYSLDTRG----------KFILSI---AYSPDG----KYLASGAIDGIINIF 191 (321)
T ss_dssp CTTSS-E-EEEECTTSEEEEEETTTCSEEEEEECSS----------SCEEEE---EECTTS----SEEEEEETTSCEEEE
T ss_pred CCCCC-E-EEEEcCCCcEEEEEcCCCceeEEecCCC----------ceEEEE---EECCCC----CEEEEEcCCCeEEEE
Confidence 34443 3 4456778999999999988766654321 112222 355542 368899999999999
Q ss_pred eCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEE
Q 016769 246 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 325 (383)
Q Consensus 246 dl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~ 325 (383)
|+++. ..+..++.|..+|.++.|++++..+++++.|+.|++||++.... ...+..+...|.+++|+|++++|+++
T Consensus 192 d~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~s~ 266 (321)
T 3ow8_A 192 DIATG-KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL----AGTLSGHASWVLNVAFCPDDTHFVSS 266 (321)
T ss_dssp ETTTT-EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECCCC-cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce----eEEEcCCCCceEEEEECCCCCEEEEE
Confidence 99874 45777889999999999999999999999999999999975432 22345567789999999999999999
Q ss_pred eCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 326 GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 326 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
+.|++|++||+.+++.+.++.+|...|.+++|+|++++|++++.|++|++||.
T Consensus 267 s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 267 SSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred eCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999999999999999999999999999999999999999997
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-39 Score=288.04 Aligned_cols=294 Identities=15% Similarity=0.200 Sum_probs=220.0
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
+...+|.+|.+.|++|+|+|++++|+||+.||+|+|||+.+++++..+..|. ..+.++.+.+ +++.|++++.|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE--TPVRAGKFIA--RKNWIIVGSDDFRI 79 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEEEG--GGTEEEEEETTSEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccC--CcEEEEEEeC--CCCEEEEECCCCEE
Confidence 4677899999999999999999999999999999999998887766655443 3577888887 46889999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++||+++++.. ..+..+.. .+ ....+.++
T Consensus 80 ~vwd~~~~~~~----~~~~~h~~----------------------~v-------------------------~~~~~~~~ 108 (304)
T 2ynn_A 80 RVFNYNTGEKV----VDFEAHPD----------------------YI-------------------------RSIAVHPT 108 (304)
T ss_dssp EEEETTTCCEE----EEEECCSS----------------------CE-------------------------EEEEECSS
T ss_pred EEEECCCCcEE----EEEeCCCC----------------------cE-------------------------EEEEEcCC
Confidence 99999876421 11100000 00 00112334
Q ss_pred CCceeeeccCCcceEEEEecCCCCeee-EeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
++ ++++|+.|++|++||++++..+. .+.. +...+.++ .|.|.+ ...+++|+.|++|++||+
T Consensus 109 ~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~----------h~~~v~~v---~~~p~~---~~~l~sgs~D~~v~iwd~ 170 (304)
T 2ynn_A 109 KP--YVLSGSDDLTVKLWNWENNWALEQTFEG----------HEHFVMCV---AFNPKD---PSTFASGCLDRTVKVWSL 170 (304)
T ss_dssp SS--EEEEEETTSCEEEEEGGGTTEEEEEECC----------CCSCEEEE---EECTTC---TTEEEEEETTSEEEEEET
T ss_pred CC--EEEEECCCCeEEEEECCCCcchhhhhcc----------cCCcEEEE---EECCCC---CCEEEEEeCCCeEEEEEC
Confidence 33 34567788999999998875443 3322 11223332 354422 235889999999999999
Q ss_pred CCCCCceeeeeccccCeEEEEEeC--CCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEE
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDE--SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 325 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~ 325 (383)
++..........|...+..+.+.+ ++..+++++.|+.|++||++... + ...+..+...+.+++|+|++++|++|
T Consensus 171 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~--~--~~~~~~h~~~v~~~~~~p~~~~l~s~ 246 (304)
T 2ynn_A 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS--C--VATLEGHMSNVSFAVFHPTLPIIISG 246 (304)
T ss_dssp TCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE--E--EEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred CCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc--c--ceeeCCCCCCEEEEEECCCCCEEEEE
Confidence 875544444455667888888865 55678999999999999997543 2 23455677889999999999999999
Q ss_pred eCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCC--EEEEEeCCCcEEEEeCCC
Q 016769 326 GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK--LMASASEDSTVALWELYP 380 (383)
Q Consensus 326 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~--~las~s~d~~i~~w~~~~ 380 (383)
+.||+|++||+.+++.+.++..|...+.+++|+|+++ ++|+|+.|| +.+|++..
T Consensus 247 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred cCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 9999999999999999999999999999999999886 578887665 77777753
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=293.44 Aligned_cols=292 Identities=18% Similarity=0.237 Sum_probs=203.7
Q ss_pred eeecCCceeeEEEeCCCCeEEEecC------CCeEEEeeCcccccccccccc--cccceeeeeeecCCCCcceeEecccC
Q 016769 14 LRGHRASVTDVCFHQTKPILFAGTT------GGELRIWDTVQHRTVSSSWVH--SAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 14 l~gH~~~V~~v~f~~~~~~L~sgs~------D~~v~vW~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
..+|.+.|++|+|+|||++|+|||. |+.|++|+..++.....+... .....+.+++|+++ ..+++++.|
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d---~~~l~~s~d 114 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE---KGILVASDS 114 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT---TEEEEEETT
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC---CCEEEEECC
Confidence 3579999999999999999999998 778999998766543322111 12245889999983 567888999
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
++|++||+.+++...........+ ... .....+
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h----------------------~~~-------------------------V~~v~~ 147 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEH----------------------DDI-------------------------VKTLSV 147 (357)
T ss_dssp SCEEEC--------CCCCEEECCC----------------------SSC-------------------------EEEEEE
T ss_pred CEEEEeeccccceeEEEeeccCCC----------------------CCC-------------------------EEEEEE
Confidence 999999998764321100000000 000 001123
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEE
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~w 245 (383)
.+++. + +++++.+++|++||+++++.+..+..+ ...+.++ .|.+.. ...+++++.|++|++|
T Consensus 148 spdg~-~-l~sgs~dg~v~iwd~~~~~~~~~~~~h----------~~~v~~v---~~s~~~---~~~~~s~~~dg~v~~w 209 (357)
T 4g56_B 148 FSDGT-Q-AVSGGKDFSVKVWDLSQKAVLKSYNAH----------SSEVNCV---AACPGK---DTIFLSCGEDGRILLW 209 (357)
T ss_dssp CSSSS-E-EEEEETTSCEEEEETTTTEEEEEECCC----------SSCEEEE---EECTTC---SSCEEEEETTSCEEEC
T ss_pred CCCCC-E-EEEEeCCCeEEEEECCCCcEEEEEcCC----------CCCEEEE---EEccCC---CceeeeeccCCceEEE
Confidence 34443 3 455677899999999999887776532 1222222 244432 2247889999999999
Q ss_pred eCCCCCCceee--eeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC-cE
Q 016769 246 DIRNPGIPLTA--MKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KI 321 (383)
Q Consensus 246 dl~~~~~~~~~--~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~ 321 (383)
|++++.. ... ...|...+.++.|+|++. .+++|+.|+.|++||+...... ..+..+...|++++|+|++ ++
T Consensus 210 d~~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~l~~sp~~~~~ 284 (357)
T 4g56_B 210 DTRKPKP-ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA----QTSAVHSQNITGLAYSYHSSPF 284 (357)
T ss_dssp CTTSSSC-BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC----EEECCCSSCEEEEEECSSSSCC
T ss_pred ECCCCce-eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe----EEEeccceeEEEEEEcCCCCCE
Confidence 9987543 322 334667899999998754 5778999999999999765432 2344566789999999987 58
Q ss_pred EEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeC-CCCEEEEEeCCCcEEEEeCC
Q 016769 322 AATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS-DCKLMASASEDSTVALWELY 379 (383)
Q Consensus 322 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp-d~~~las~s~d~~i~~w~~~ 379 (383)
||+|+.|++|+|||+++++.+..+ +|...|.+++||| |+++|||||.|++|++|++.
T Consensus 285 lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 285 LASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 999999999999999999877655 7999999999999 78999999999999999995
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-38 Score=283.80 Aligned_cols=292 Identities=16% Similarity=0.265 Sum_probs=209.7
Q ss_pred CeeeeeecCCceeeEEEeCCC-CeEEEecCCCeEEEeeCcccc-----cccccccccccceeeeeeecCCCCcceeEecc
Q 016769 10 PVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHR-----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~-~~L~sgs~D~~v~vW~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (383)
+..+|+||++.|++|+|+|++ ++|+|||.|++|++|++.... ++..+..|. ..+.++.+++ ++.+|++++
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~--dg~~l~s~s 84 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS--HIVQDCTLTA--DGAYALSAS 84 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS--SCEEEEEECT--TSSEEEEEE
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc--ccEEEEEECC--CCCEEEEEe
Confidence 456899999999999999965 799999999999999986432 222333343 4678888988 468999999
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
.|++|++||+++++... .+..+. ..+. ..
T Consensus 85 ~D~~v~~wd~~~~~~~~----~~~~h~----------------------~~v~-------------------------~~ 113 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQ----RFVGHK----------------------SDVM-------------------------SV 113 (319)
T ss_dssp TTSEEEEEETTTTEEEE----EEECCS----------------------SCEE-------------------------EE
T ss_pred CCCEEEEEECCCCCeeE----EEccCC----------------------CcEE-------------------------EE
Confidence 99999999998764210 100000 0000 01
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCC--CCceEEEEEeCCCc
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS--QGFVNVLAGYEDGS 241 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~sg~~dg~ 241 (383)
.+.+++. ++++|+.|++|++||++.. ++..+..+ .....++ .+.|... .+...+++++.|++
T Consensus 114 ~~~~~~~--~l~s~s~D~~i~vwd~~~~-~~~~~~~h----------~~~v~~~---~~~~~~~~~~~~~~l~s~~~d~~ 177 (319)
T 3frx_A 114 DIDKKAS--MIISGSRDKTIKVWTIKGQ-CLATLLGH----------NDWVSQV---RVVPNEKADDDSVTIISAGNDKM 177 (319)
T ss_dssp EECTTSC--EEEEEETTSCEEEEETTSC-EEEEECCC----------SSCEEEE---EECCC------CCEEEEEETTSC
T ss_pred EEcCCCC--EEEEEeCCCeEEEEECCCC-eEEEEecc----------CCcEEEE---EEccCCCCCCCccEEEEEeCCCE
Confidence 1223332 4556778999999999643 34444321 1111222 2333211 11235889999999
Q ss_pred EEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcE
Q 016769 242 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 321 (383)
Q Consensus 242 i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 321 (383)
|++||+++. .....+.+|..+|.+++|+|++..+++++.|+.|++||+.... ... .+. ....+.+++|+|++.+
T Consensus 178 i~~wd~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~--~~~--~~~-~~~~v~~~~~sp~~~~ 251 (319)
T 3frx_A 178 VKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--AMY--TLS-AQDEVFSLAFSPNRYW 251 (319)
T ss_dssp EEEEETTTT-EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE--EEE--EEE-CCSCEEEEEECSSSSE
T ss_pred EEEEECCcc-hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEE--Eec-CCCcEEEEEEcCCCCE
Confidence 999999874 4456678899999999999999999999999999999997543 222 222 2357999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceEEEec--------ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 322 AATAGWDRRVRIYNYRKGSALAILK--------YHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 322 l~s~~~dg~i~iwd~~~~~~~~~~~--------~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+++++.+ .+++|+++....+..+. .|...+.+++|+|||++|++|+.|+.|++||+.
T Consensus 252 la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 252 LAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 9887754 59999998877665553 356678999999999999999999999999984
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=289.21 Aligned_cols=290 Identities=15% Similarity=0.188 Sum_probs=203.8
Q ss_pred eecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccc----ccccc-----cccccccceeeeeeecCCCCcceeEecccC
Q 016769 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSS-----SWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 15 ~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
..|...|.+++|+|||++|++++ |+++|+||.... ..... ........++.+++|+++ +.+++++.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---~~l~~~s~d 102 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE---RGILVASDS 102 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT---TEEEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC---CeEEEEECC
Confidence 46788899999999999999887 778899973211 00000 001111235788999873 689999999
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
++|++||+++++........... +. .. .....+
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~-------------H~---------~~-------------------------V~~v~~ 135 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYE-------------HD---------DI-------------------------VSTVSV 135 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEEC-------------CS---------SC-------------------------EEEEEE
T ss_pred CEEEEEeccCCCceeEeeccccC-------------CC---------CC-------------------------EEEEEE
Confidence 99999999887532100000000 00 00 001123
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEE
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~w 245 (383)
+++++ ++++|+.|++|++||+++++.+..+..+ ...+.++ .|.+.. ...+++|+.|++|++|
T Consensus 136 spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h----------~~~V~~~---~~~~~~---~~~l~s~s~D~~v~iw 197 (344)
T 4gqb_B 136 LSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAH----------AAQVTCV---AASPHK---DSVFLSCSEDNRILLW 197 (344)
T ss_dssp CTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC----------SSCEEEE---EECSSC---TTEEEEEETTSCEEEE
T ss_pred CCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCc----------CCceEEE---EecCCC---CCceeeeccccccccc
Confidence 34443 3456677899999999999887777532 1223332 244432 2257899999999999
Q ss_pred eCCCCCCceeeee--ccccCeEEEEEeCCC-CceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC-cE
Q 016769 246 DIRNPGIPLTAMK--VHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KI 321 (383)
Q Consensus 246 dl~~~~~~~~~~~--~h~~~v~~~~~~~~~-~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~ 321 (383)
|++++. +...+. .|...+.++.|++.+ ..+++|+.|+.|++||++..... ..+..+...|++++|+|++ ++
T Consensus 198 d~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~----~~~~~h~~~v~~v~fsp~g~~~ 272 (344)
T 4gqb_B 198 DTRCPK-PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV----LSSAVHSQCVTGLVFSPHSVPF 272 (344)
T ss_dssp ETTSSS-CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC----EEEECCSSCEEEEEECSSSSCC
T ss_pred cccccc-eeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE----EEEcCCCCCEEEEEEccCCCeE
Confidence 998754 344443 455678999998855 45688999999999999754332 2345677889999999998 58
Q ss_pred EEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 322 AATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 322 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
|++|+.|++|+|||+.+++.+ .+.+|.+.|.+++|||+++ +|+|||.|++|++|++.
T Consensus 273 lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 273 LASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 999999999999999988755 5789999999999999987 67899999999999985
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=287.26 Aligned_cols=303 Identities=16% Similarity=0.200 Sum_probs=214.3
Q ss_pred CCeeeeeecCC-ceeeEEEeCCCCeEEEecCCCeEEEeeCccccccccc-ccccccceeeeeeecCCCCcceeEecccCC
Q 016769 9 DPVAVLRGHRA-SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS-WVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (383)
Q Consensus 9 ~~~~~l~gH~~-~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (383)
..+.+|.+|.+ .|++|+|+|+|++|+||+.|++|+|||+.++...... ....+...+.+++|+| ++++|++++.|+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~s~D~ 83 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP--CGNYLASASFDA 83 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT--TSSEEEEEETTS
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC--CCCEEEEEECCC
Confidence 45678999998 9999999999999999999999999998765422111 1112234688999998 468999999999
Q ss_pred eEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 87 ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
++++||++++.. ..+ ..+ .... .. .....+.
T Consensus 84 ~v~iw~~~~~~~-----~~~---------~~~-~~h~---------~~-------------------------v~~v~~s 114 (345)
T 3fm0_A 84 TTCIWKKNQDDF-----ECV---------TTL-EGHE---------NE-------------------------VKSVAWA 114 (345)
T ss_dssp CEEEEEECCC-E-----EEE---------EEE-CCCS---------SC-------------------------EEEEEEC
T ss_pred cEEEEEccCCCe-----EEE---------EEc-cCCC---------CC-------------------------ceEEEEe
Confidence 999999875421 000 000 0000 00 0011233
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCee---eEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERC---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
+++. + +++++.|++|++||++++... ..+.. +...+.+ ..+.|+. ..+++|+.|++|+
T Consensus 115 p~~~-~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----------h~~~v~~---~~~~p~~----~~l~s~s~d~~i~ 175 (345)
T 3fm0_A 115 PSGN-L-LATCSRDKSVWVWEVDEEDEYECVSVLNS----------HTQDVKH---VVWHPSQ----ELLASASYDDTVK 175 (345)
T ss_dssp TTSS-E-EEEEETTSCEEEEEECTTSCEEEEEEECC----------CCSCEEE---EEECSSS----SCEEEEETTSCEE
T ss_pred CCCC-E-EEEEECCCeEEEEECCCCCCeEEEEEecC----------cCCCeEE---EEECCCC----CEEEEEeCCCcEE
Confidence 4443 3 455677899999999876532 22221 1112222 2355542 2588999999999
Q ss_pred EEeCCCCC-CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCe-----------eEEeeee-ecCCCCe
Q 016769 244 VWDIRNPG-IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS-----------CVIKKEI-NLERPGI 310 (383)
Q Consensus 244 ~wdl~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~-----------~~~~~~~-~~~~~~i 310 (383)
+||++... .+...+.+|..+|.+++|++++..+++++.|++|++||+...... ....... ..+...|
T Consensus 176 ~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 255 (345)
T 3fm0_A 176 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI 255 (345)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCE
T ss_pred EEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcE
Confidence 99987643 234677899999999999999999999999999999997432110 0001111 2255679
Q ss_pred EEEEECCCCcEEEEEeCCCcEEEEEcCCCc---------eEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCCC
Q 016769 311 SGTSIRPDSKIAATAGWDRRVRIYNYRKGS---------ALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYP 380 (383)
Q Consensus 311 ~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~~ 380 (383)
.+++|+|++.++++++.|++|++|+...+. ......+|...|.+|+|+|+++ +|||||.||+|++|++..
T Consensus 256 ~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 256 YDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp EEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred EEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 999999999999999999999999997542 1123468999999999999985 999999999999999864
Q ss_pred C
Q 016769 381 P 381 (383)
Q Consensus 381 ~ 381 (383)
+
T Consensus 336 ~ 336 (345)
T 3fm0_A 336 P 336 (345)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=277.40 Aligned_cols=292 Identities=20% Similarity=0.269 Sum_probs=216.1
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
+..++.||.+.|++++|+|++++|++|+.|+.|++|+..+++....+..|. ..+.++++++ +++.|++++.|++|+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSS--DSNLLVSASDDKTLK 90 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSEEE
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCC--CceEEEEEcC--CCCEEEEECCCCEEE
Confidence 456789999999999999999999999999999999998777665554443 4578899988 468999999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+||+++++.. ..+..+.. .+ ....+.+++
T Consensus 91 vwd~~~~~~~----~~~~~~~~----------------------~v-------------------------~~~~~~~~~ 119 (312)
T 4ery_A 91 IWDVSSGKCL----KTLKGHSN----------------------YV-------------------------FCCNFNPQS 119 (312)
T ss_dssp EEETTTCCEE----EEEECCSS----------------------CE-------------------------EEEEECSSS
T ss_pred EEECCCCcEE----EEEcCCCC----------------------CE-------------------------EEEEEcCCC
Confidence 9999876421 11100000 00 001122333
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
. + +++++.++.|++||+++++.+..+..+. ....++ .+.++. ..+++|+.|+.|++||+++
T Consensus 120 ~-~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------~~v~~~---~~~~~~----~~l~~~~~d~~i~~wd~~~ 180 (312)
T 4ery_A 120 N-L-IVSGSFDESVRIWDVKTGKCLKTLPAHS----------DPVSAV---HFNRDG----SLIVSSSYDGLCRIWDTAS 180 (312)
T ss_dssp S-E-EEEEETTSCEEEEETTTCCEEEEECCCS----------SCEEEE---EECTTS----SEEEEEETTSCEEEEETTT
T ss_pred C-E-EEEEeCCCcEEEEECCCCEEEEEecCCC----------CcEEEE---EEcCCC----CEEEEEeCCCcEEEEECCC
Confidence 2 3 4556778999999999988776664321 112222 244432 3688999999999999987
Q ss_pred CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC---CeEEEEECCCCcEEEEEe
Q 016769 250 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP---GISGTSIRPDSKIAATAG 326 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~---~i~~~~~~p~~~~l~s~~ 326 (383)
..........+..++..+.|++++..+++++.|+.|++||+.... ... ....+.. .+......++++++++|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~l~sg~ 256 (312)
T 4ery_A 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLK--TYTGHKNEKYCIFANFSVTGGKWIVSGS 256 (312)
T ss_dssp CCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE--EEE--EECSSCCSSSCCCEEEECSSSCEEEECC
T ss_pred CceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc--EEE--EEEecCCceEEEEEEEEeCCCcEEEEEC
Confidence 543223334566789999999999999999999999999997543 222 1222222 123333457889999999
Q ss_pred CCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEe--CCCcEEEEeCC
Q 016769 327 WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS--EDSTVALWELY 379 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s--~d~~i~~w~~~ 379 (383)
.||+|++||+.+++.+..+.+|...|.+++|+|++++|++++ .|++|++|+..
T Consensus 257 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999999999999999999999999999999997 69999999963
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-38 Score=308.17 Aligned_cols=349 Identities=15% Similarity=0.203 Sum_probs=222.1
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccccccccc-----ccccceeeeeeecCCCCcceeEecc
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV-----HSAAHGIVSVATGPSIGLNKVISQG 83 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (383)
+...+|.+|++.|++++|+||+++|+||+.|++|+|||..++++...+.. ..+...+.+++|+| ++.+|+|++
T Consensus 181 ~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~s~s 258 (611)
T 1nr0_A 181 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP--DGTKIASAS 258 (611)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT--TSSEEEEEE
T ss_pred eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC--CCCEEEEEe
Confidence 44568899999999999999999999999999999999887766544321 01224688999998 468999999
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCcee-eeeEEee-ccccccccccCCCCccceeccCcccccCccccccccCCccce
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLV-KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEI 161 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (383)
.|++|++||+++++... .+...... ....... ...........+....+....+... .. ...+. ....
T Consensus 259 ~D~~v~lWd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~-~~-~~gh~----~~v~ 328 (611)
T 1nr0_A 259 ADKTIKIWNVATLKVEK----TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSID-QV-RYGHN----KAIT 328 (611)
T ss_dssp TTSEEEEEETTTTEEEE----EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEE-EE-ECCCS----SCEE
T ss_pred CCCeEEEEeCCCCceee----eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcc-eE-EcCCC----CCEE
Confidence 99999999998764321 11111000 0000000 0000000000000011111100000 00 00000 0111
Q ss_pred ecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccC-c-CCCCC---------------------------------
Q 016769 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN-S-CGGSP--------------------------------- 206 (383)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~-~-~~~s~--------------------------------- 206 (383)
...++++++ ++ ++++.|++|++||++++.....+... . .+.++
T Consensus 329 ~l~~spdg~-~l-~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~ 406 (611)
T 1nr0_A 329 ALSSSADGK-TL-FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAV 406 (611)
T ss_dssp EEEECTTSS-EE-EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCC
T ss_pred EEEEeCCCC-EE-EEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccccee
Confidence 123445554 34 45667899999999887654332110 0 00000
Q ss_pred -----------CcCCCCCcee-----------------------eEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 207 -----------NFSSKGRGMC-----------------------MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 207 -----------~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
.+++.+.... .....|.|+ ...+++|+.|++|++||++....
T Consensus 407 ~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spd----g~~lasgs~D~~v~lwd~~~~~~ 482 (611)
T 1nr0_A 407 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND----KQFVAVGGQDSKVHVYKLSGASV 482 (611)
T ss_dssp EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT----SCEEEEEETTSEEEEEEEETTEE
T ss_pred eeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCC----CCEEEEeCCCCeEEEEEccCCce
Confidence 0001110000 001123343 23688999999999999976322
Q ss_pred -ceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcE
Q 016769 253 -PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 331 (383)
Q Consensus 253 -~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i 331 (383)
.... ..|...|.+++|+|++..+++++.|++|++||+... ...........|...|.+++|+||+++||+|+.|++|
T Consensus 483 ~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~-~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v 560 (611)
T 1nr0_A 483 SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN-FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560 (611)
T ss_dssp EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT-TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC-CceeeeeeeeecccceeEEEECCCCCEEEEEECCCcE
Confidence 1233 678999999999999999999999999999998742 1111110123367789999999999999999999999
Q ss_pred EEEEcCCCc-eE-EEeccc-ccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 332 RIYNYRKGS-AL-AILKYH-HATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 332 ~iwd~~~~~-~~-~~~~~h-~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
++||+.++. .. ..+.+| ...|.+++|+||++ |++|+.|++|++|++
T Consensus 561 ~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 561 IVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred EEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 999998765 33 567789 89999999999998 999999999999998
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=288.56 Aligned_cols=291 Identities=20% Similarity=0.285 Sum_probs=212.9
Q ss_pred eecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccc----------------cceeeeeeecCCCCcce
Q 016769 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA----------------AHGIVSVATGPSIGLNK 78 (383)
Q Consensus 15 ~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 78 (383)
.+|.+.|++++|+|||++|++|+ |+++++|++.+++.+..+..+.. ...+.+++|++ ++..
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~--dg~~ 137 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--DGKF 137 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT--TSSE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC--CCCE
Confidence 47999999999999999999987 78999999988766544332211 11367889988 4689
Q ss_pred eEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCc
Q 016769 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRS 158 (383)
Q Consensus 79 l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (383)
|++++.|++|++||+++++.. ..+..+ . ..+
T Consensus 138 l~s~~~d~~i~iwd~~~~~~~----~~~~~h-------------~---------~~v----------------------- 168 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKIV----MILQGH-------------E---------QDI----------------------- 168 (393)
T ss_dssp EEEEETTSCEEEEETTTTEEE----EEECCC-------------S---------SCE-----------------------
T ss_pred EEEEcCCCeEEEEECCCCcEE----EEEccC-------------C---------CCE-----------------------
Confidence 999999999999999875311 000000 0 000
Q ss_pred cceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeC
Q 016769 159 FEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 238 (383)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~ 238 (383)
....+.+++. ++ ++++.|++|++||+++++....+... ....++ .+.|. +...+++|+.
T Consensus 169 --~~~~~~p~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~~~-----------~~v~~~---~~~~~---~~~~l~~~s~ 227 (393)
T 1erj_A 169 --YSLDYFPSGD-KL-VSGSGDRTVRIWDLRTGQCSLTLSIE-----------DGVTTV---AVSPG---DGKYIAAGSL 227 (393)
T ss_dssp --EEEEECTTSS-EE-EEEETTSEEEEEETTTTEEEEEEECS-----------SCEEEE---EECST---TCCEEEEEET
T ss_pred --EEEEEcCCCC-EE-EEecCCCcEEEEECCCCeeEEEEEcC-----------CCcEEE---EEECC---CCCEEEEEcC
Confidence 0011234443 33 45667899999999998876555321 111121 24442 1236889999
Q ss_pred CCcEEEEeCCCCCCceeee-------eccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCee--------EEeeee
Q 016769 239 DGSILVWDIRNPGIPLTAM-------KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC--------VIKKEI 303 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~--------~~~~~~ 303 (383)
|++|++||+++.. .+..+ .+|...|.++.|++++..+++++.|+.|++||+....... ......
T Consensus 228 d~~v~iwd~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~ 306 (393)
T 1erj_A 228 DRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 306 (393)
T ss_dssp TSCEEEEETTTCC-EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEE
T ss_pred CCcEEEEECCCCc-EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEE
Confidence 9999999998743 33333 5688999999999999999999999999999997532110 111223
Q ss_pred ecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeC------CCCEEEEEeCCCcEEEEe
Q 016769 304 NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS------DCKLMASASEDSTVALWE 377 (383)
Q Consensus 304 ~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp------d~~~las~s~d~~i~~w~ 377 (383)
..+...+.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+| ++++||+||.|++|++|+
T Consensus 307 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 45667899999999999999999999999999999999999999999999999986 688999999999999999
Q ss_pred CC
Q 016769 378 LY 379 (383)
Q Consensus 378 ~~ 379 (383)
+.
T Consensus 387 ~~ 388 (393)
T 1erj_A 387 YK 388 (393)
T ss_dssp EE
T ss_pred cc
Confidence 84
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=277.19 Aligned_cols=293 Identities=17% Similarity=0.280 Sum_probs=209.4
Q ss_pred CeeeeeecCCceeeEEEeCC-CCeEEEecCCCeEEEeeCcccccc-----cccccccccceeeeeeecCCCCcceeEecc
Q 016769 10 PVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTV-----SSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~-~~~L~sgs~D~~v~vW~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (383)
...+|+||++.|++|+|+|+ +++|+|||.|++|+|||+.+.+.. ..+..| ...+.++.+++ ++..|++++
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h--~~~V~~~~~s~--dg~~l~s~~ 105 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH--SHFVSDVVISS--DGQFALSGS 105 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC--SSCEEEEEECT--TSSEEEEEE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC--CCCEEEEEECC--CCCEEEEEc
Confidence 44579999999999999998 689999999999999998765432 222233 34688899988 468999999
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
.|++|++|+........ .. .. ... .....
T Consensus 106 ~d~~i~~~~~~~~~~~~----~~------------~~-~~~----------------------------------~~~~~ 134 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTR----RF------------VG-HTK----------------------------------DVLSV 134 (340)
T ss_dssp TTSEEEEEETTTTEEEE----EE------------EC-CSS----------------------------------CEEEE
T ss_pred ccccceEEeecccceee----ee------------cC-CCC----------------------------------ceeEE
Confidence 99999999987652100 00 00 000 00000
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
...+.+ .+ +++++.|+.+++||+........... .+.....+. .+.+.. ....+++++.|+.|+
T Consensus 135 ~~~~~~-~~-l~s~s~d~~~~~~d~~~~~~~~~~~~---------~~~~~v~~~---~~~~~~--~~~~~~s~~~d~~i~ 198 (340)
T 4aow_A 135 AFSSDN-RQ-IVSGSRDKTIKLWNTLGVCKYTVQDE---------SHSEWVSCV---RFSPNS--SNPIIVSCGWDKLVK 198 (340)
T ss_dssp EECTTS-SC-EEEEETTSCEEEECTTSCEEEEECSS---------SCSSCEEEE---EECSCS--SSCEEEEEETTSCEE
T ss_pred EEeecC-cc-ceeecCCCeEEEEEeCCCceEEEEec---------cccCcccce---EEccCC--CCcEEEEEcCCCEEE
Confidence 111222 23 34566789999999877654322211 011111111 233332 123578899999999
Q ss_pred EEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEE
Q 016769 244 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 323 (383)
Q Consensus 244 ~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 323 (383)
+||+++. .....+.+|..+|.+++|++++..+++++.|+.|++||+.... ... ... ....+..+.|+|++.+ +
T Consensus 199 i~d~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~--~~~--~~~-~~~~v~~~~~~~~~~~-~ 271 (340)
T 4aow_A 199 VWNLANC-KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--HLY--TLD-GGDIINALCFSPNRYW-L 271 (340)
T ss_dssp EEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE--EEE--EEE-CSSCEEEEEECSSSSE-E
T ss_pred EEECCCC-ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc--eee--eec-CCceEEeeecCCCCce-e
Confidence 9999874 4567788999999999999999999999999999999997543 221 222 2357999999998865 4
Q ss_pred EEeCCCcEEEEEcCCCceEEEe---------cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 324 TAGWDRRVRIYNYRKGSALAIL---------KYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 324 s~~~dg~i~iwd~~~~~~~~~~---------~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+++.|++|++||++.+..+..+ .+|...|.+++|+|||++||+|+.||.|+|||+..
T Consensus 272 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 272 CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 5677999999999887665544 36888999999999999999999999999999864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=276.71 Aligned_cols=306 Identities=16% Similarity=0.202 Sum_probs=205.0
Q ss_pred CCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccc--cccccccccccceeeeeeecCCCCcceeEeccc
Q 016769 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (383)
Q Consensus 7 ~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (383)
..+++.+|.+|++.|++++|+|+ +|+||+.|++|++||+..+. ....+....+...+.+++|+| ++..|++++.
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~las~s~ 78 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP--HTSLLAAGSF 78 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT--TSSEEEEEET
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC--CCCEEEEEeC
Confidence 44567899999999999999998 99999999999999987642 222221111234688999998 4688999999
Q ss_pred CCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 85 D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
|++|++||+++..........+ ....... . ......
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~----------~~~~~h~---------~-------------------------~V~~v~ 114 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLL----------AIIEGHE---------N-------------------------EVKGVA 114 (330)
T ss_dssp TSCEEEEEC-------CCCEEE----------EEEC--------------------------------------CEEEEE
T ss_pred CCcEEEEEcccCcCccccceeE----------EEEcCCC---------C-------------------------cEEEEE
Confidence 9999999986431100000000 0000000 0 000112
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCC-C---eeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTA-E---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 240 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~-~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg 240 (383)
+++++. + +++++.|++|++||++.. . ++..+..+ ...+.++ .|.|+. ..+++|+.|+
T Consensus 115 ~sp~g~-~-las~s~D~~v~iwd~~~~~~~~~~~~~~~~h----------~~~v~~v---~~~p~~----~~l~s~s~D~ 175 (330)
T 2hes_X 115 WSNDGY-Y-LATCSRDKSVWIWETDESGEEYECISVLQEH----------SQDVKHV---IWHPSE----ALLASSSYDD 175 (330)
T ss_dssp ECTTSC-E-EEEEETTSCEEEEECCTTCCCCEEEEEECCC----------SSCEEEE---EECSSS----SEEEEEETTS
T ss_pred ECCCCC-E-EEEEeCCCEEEEEeccCCCCCeEEEEEeccC----------CCceEEE---EECCCC----CEEEEEcCCC
Confidence 334443 3 455677899999999532 2 23333321 1122222 355542 3688999999
Q ss_pred cEEEEeCCCCC-CceeeeeccccCeEEEEEeCC--CCceEEEEcCCcEEEEEccCCCC--ee--EEeeeee-cCCCCeEE
Q 016769 241 SILVWDIRNPG-IPLTAMKVHLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTG--SC--VIKKEIN-LERPGISG 312 (383)
Q Consensus 241 ~i~~wdl~~~~-~~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~i~~wdl~~~~~--~~--~~~~~~~-~~~~~i~~ 312 (383)
+|++||++... .++..+.+|..+|.++.|+++ +..+++++.|++|++||+..... .. .....+. .+...|.+
T Consensus 176 ~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 255 (330)
T 2hes_X 176 TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYN 255 (330)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEE
T ss_pred eEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEE
Confidence 99999987532 356778899999999999987 55789999999999999864311 00 1111222 25678999
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCCc--eEE-Eeccccc-ceeEEEEeC--CCCEEEEEeCCCcEEEEeCCC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYRKGS--ALA-ILKYHHA-TCNAVSFSS--DCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~--~~~-~~~~h~~-~v~~v~~sp--d~~~las~s~d~~i~~w~~~~ 380 (383)
++|++++ +|++++.||+|++||..+++ ... .+.+|.. .|.+++|+| ++++||+||.|++|+|||+..
T Consensus 256 v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 256 VAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999765 88999999999999998774 333 3357887 899999999 789999999999999999864
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=283.89 Aligned_cols=301 Identities=12% Similarity=0.090 Sum_probs=203.0
Q ss_pred CCceeeEEEeCCCCeEEEecCCC-------eEEEeeCccccccccc--------ccccccceeeeeeecCC-------CC
Q 016769 18 RASVTDVCFHQTKPILFAGTTGG-------ELRIWDTVQHRTVSSS--------WVHSAAHGIVSVATGPS-------IG 75 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~D~-------~v~vW~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-------~~ 75 (383)
.-+|++++|+||+++|++||.|. .|++|++......... ........+.++++... .+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 45899999999999999998754 5999998654321110 00011122344444321 11
Q ss_pred cceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCcccccccc
Q 016769 76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKES 155 (383)
Q Consensus 76 ~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (383)
...+++++.|+++|+|++++... ... ........ ......
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~----~~~---------~~~~~~~~-----~~~~~~---------------------- 133 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVND----QLE---------FLTSVDFD-----ASTNAD---------------------- 133 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTT----EEE---------EEEEECSS-----CCCCTT----------------------
T ss_pred ccEEEEecCCCcEEEEEecCCCc----eEE---------Eeeeecee-----ecCCcc----------------------
Confidence 23455667788899998865421 000 00000000 000000
Q ss_pred CCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEE
Q 016769 156 NRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 235 (383)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 235 (383)
...-...++++|+..++++++.|++||+||+++++++..+.... .+..+ .|.|+. ..+++
T Consensus 134 --~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~-----------~V~~v---~fspdg----~~l~s 193 (365)
T 4h5i_A 134 --DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG-----------EVKDL---HFSTDG----KVVAY 193 (365)
T ss_dssp --CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS-----------CCCEE---EECTTS----SEEEE
T ss_pred --cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCC-----------ceEEE---EEccCC----ceEEe
Confidence 00112345677765556677789999999999998877665321 12222 355542 24666
Q ss_pred EeCCCcEEEEeCCCCCCc-eeeeeccccCeEEEEEeCCCCceEEEEcCC----cEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 236 GYEDGSILVWDIRNPGIP-LTAMKVHLEPVLCLSIDESCNGGISGGADQ----KIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 236 g~~dg~i~~wdl~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~----~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
++. +.+++|+..+.... ......|...|.++.|++++..+++++.|+ .+++|++...............+...|
T Consensus 194 ~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V 272 (365)
T 4h5i_A 194 ITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGI 272 (365)
T ss_dssp ECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCE
T ss_pred ccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCe
Confidence 664 55666666654432 234456888999999999999999998887 577888865543333334455677789
Q ss_pred EEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEe-cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 311 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 311 ~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
++++|+||+++||+|+.|++|+|||+.+++++..+ .+|...|.+|+|||||++|||||.|++|+|||+.
T Consensus 273 ~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 273 TSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred EeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 99999999999999999999999999999998875 7899999999999999999999999999999994
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-36 Score=273.72 Aligned_cols=296 Identities=18% Similarity=0.257 Sum_probs=206.4
Q ss_pred CCeeeeeecCCceeeEEE-----eC-CCCeEEEecCCCeEEEeeCcccc-------cccccccccccceeeeeeecCCCC
Q 016769 9 DPVAVLRGHRASVTDVCF-----HQ-TKPILFAGTTGGELRIWDTVQHR-------TVSSSWVHSAAHGIVSVATGPSIG 75 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f-----~~-~~~~L~sgs~D~~v~vW~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 75 (383)
....+|+||++.|++|+| ++ ++++|+|||.|++|++||+.+.. +...+..|. ..+.++++++ +
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~--~~V~~~~~~~--~ 87 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN--HFVSDLALSQ--E 87 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCS--SCEEEEEECS--S
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCC--CceEEEEECC--C
Confidence 356789999999999999 76 89999999999999999986432 122233333 4578889988 4
Q ss_pred cceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCcccccccc
Q 016769 76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKES 155 (383)
Q Consensus 76 ~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (383)
+..+++++.|++|++||++++... ..+..+. ..
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~----~~~~~h~----------------------~~--------------------- 120 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTY----KRFVGHQ----------------------SE--------------------- 120 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEE----EEEECCC----------------------SC---------------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEE----EEEcCCC----------------------Cc---------------------
Confidence 678999999999999999876421 0110000 00
Q ss_pred CCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCC------C
Q 016769 156 NRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ------G 229 (383)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~------~ 229 (383)
.....+.+++. ++ ++++.|++|++||+..... ...... ..+.....++ .|.|.... .
T Consensus 121 ----v~~v~~sp~~~-~l-~s~~~d~~i~~wd~~~~~~-~~~~~~-------~~~~~~v~~~---~~~~~~~~~~~~~~~ 183 (343)
T 2xzm_R 121 ----VYSVAFSPDNR-QI-LSAGAEREIKLWNILGECK-FSSAEK-------ENHSDWVSCV---RYSPIMKSANKVQPF 183 (343)
T ss_dssp ----EEEEEECSSTT-EE-EEEETTSCEEEEESSSCEE-EECCTT-------TSCSSCEEEE---EECCCCCSCSCCCSS
T ss_pred ----EEEEEECCCCC-EE-EEEcCCCEEEEEeccCCce-eeeecc-------cCCCceeeee---eeccccccccccCCC
Confidence 00012334443 33 4556789999999974332 222110 0111112222 23332110 0
Q ss_pred ceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCC
Q 016769 230 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 309 (383)
Q Consensus 230 ~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~ 309 (383)
...+++++.|++|++||.+ ......+..|..+|.+++|++++..+++++.|+.|++||+........ .. .....
T Consensus 184 ~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~---~~-~~~~~ 257 (343)
T 2xzm_R 184 APYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR---EF-DAGST 257 (343)
T ss_dssp CCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE---EE-ECSSC
T ss_pred CCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce---ee-cCCCc
Confidence 1358899999999999954 344567788999999999999999999999999999999953322111 11 12346
Q ss_pred eEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEE--Eec-----------ccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 016769 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA--ILK-----------YHHATCNAVSFSSDCKLMASASEDSTVALW 376 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~-----------~h~~~v~~v~~spd~~~las~s~d~~i~~w 376 (383)
+.+++|+|+++++++ +.|+.|++||+.+++... .+. +|...|.+++|+|+|++|++|+.||+|++|
T Consensus 258 v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 258 INQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF 336 (343)
T ss_dssp EEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEE
T ss_pred EEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEE
Confidence 999999999988765 568889999998765432 333 688899999999999999999999999999
Q ss_pred eCC
Q 016769 377 ELY 379 (383)
Q Consensus 377 ~~~ 379 (383)
++.
T Consensus 337 ~~~ 339 (343)
T 2xzm_R 337 SFE 339 (343)
T ss_dssp EEE
T ss_pred EEE
Confidence 975
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=264.31 Aligned_cols=259 Identities=17% Similarity=0.222 Sum_probs=190.7
Q ss_pred eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccc--ccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
+.++.+|.+.|++++|+|+|++||||+.|++|+|||+.+. +++..+..|. ..+.+++|.+..++..|+|++.|++|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~--~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcccc--CCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 3568899999999999999999999999999999998643 4444554454 45788888753235789999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++||++++.... ...+
T Consensus 80 ~iWd~~~~~~~~--~~~~-------------------------------------------------------------- 95 (297)
T 2pm7_B 80 MIWKEENGRWSQ--IAVH-------------------------------------------------------------- 95 (297)
T ss_dssp EEEEBSSSCBCC--CEEE--------------------------------------------------------------
T ss_pred EEEEcCCCceEE--EEEe--------------------------------------------------------------
Confidence 999997652100 0000
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
.+ ....|+ ++ .|.|... ...+++|+.|++|++||++
T Consensus 96 -------~~-h~~~v~-------------------------------~v---~~~p~~~--g~~l~s~s~d~~v~~wd~~ 131 (297)
T 2pm7_B 96 -------AV-HSASVN-------------------------------SV---QWAPHEY--GPMLLVASSDGKVSVVEFK 131 (297)
T ss_dssp -------CC-CSSCEE-------------------------------EE---EECCGGG--CSEEEEEETTSEEEEEEBC
T ss_pred -------ec-CCCcee-------------------------------EE---EeCcCCC--CcEEEEEECCCcEEEEEec
Confidence 00 000000 00 1111100 0146788889999999987
Q ss_pred CCCC-ceeeeeccccCeEEEEEeCC-------------CCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEE
Q 016769 249 NPGI-PLTAMKVHLEPVLCLSIDES-------------CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 314 (383)
Q Consensus 249 ~~~~-~~~~~~~h~~~v~~~~~~~~-------------~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~ 314 (383)
+... ....+..|...|.++.|++. +..+++|+.|+.|++||++...........+..|...|.+++
T Consensus 132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~ 211 (297)
T 2pm7_B 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (297)
T ss_dssp SSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred CCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE
Confidence 6432 23456788889999999876 357899999999999999865443333445566778899999
Q ss_pred ECCCC---cEEEEEeCCCcEEEEEcCCCc---eEEEe--cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 315 IRPDS---KIAATAGWDRRVRIYNYRKGS---ALAIL--KYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 315 ~~p~~---~~l~s~~~dg~i~iwd~~~~~---~~~~~--~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
|+|++ ++||+++.|++|++||++... ....+ ..|...|.+++|+|++++||+++.|+.|+||+..
T Consensus 212 ~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 212 WSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99984 899999999999999997643 12233 4688899999999999999999999999999975
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=268.01 Aligned_cols=298 Identities=17% Similarity=0.230 Sum_probs=222.0
Q ss_pred eeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEe
Q 016769 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~W 91 (383)
.+|.+|++.|++++|+|++++|++|+.|+.|++||+.+++.+..+..|. ..+.++++.+ +++.|++++.|++|++|
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT--GTIWSIDVDC--FTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCS--SCEEEEEECT--TSSEEEEEETTTEEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcC--CcEEEEEEcC--CCCEEEEEeCCCeEEEE
Confidence 4689999999999999999999999999999999998887776655443 4578889988 46899999999999999
Q ss_pred ecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCc
Q 016769 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPK 171 (383)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (383)
|+++++... .+. .... + ....+.+++.
T Consensus 102 d~~~~~~~~----~~~-----------~~~~------------v-------------------------~~~~~~~~~~- 128 (369)
T 3zwl_B 102 DVSNGQCVA----TWK-----------SPVP------------V-------------------------KRVEFSPCGN- 128 (369)
T ss_dssp ETTTCCEEE----EEE-----------CSSC------------E-------------------------EEEEECTTSS-
T ss_pred ECCCCcEEE----Eee-----------cCCC------------e-------------------------EEEEEccCCC-
Confidence 998764211 000 0000 0 0011223333
Q ss_pred eeeeccCCc-----ceEEEEecCCCCeeeEeccCcCCC-CCCcCCCC--CceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 172 YMAVAGEQL-----SEVEIWDLNTAERCTRLHQNSCGG-SPNFSSKG--RGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 172 ~~~~~g~~~-----~~i~~Wdl~~~~~~~~~~~~~~~~-s~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
+++++ ..+ +.|++||+++......+....... ........ ...++ .+.+. ...+++++.||.|+
T Consensus 129 ~l~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~l~~~~~dg~i~ 200 (369)
T 3zwl_B 129 YFLAI-LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA---GWSTK----GKYIIAGHKDGKIS 200 (369)
T ss_dssp EEEEE-ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE---EECGG----GCEEEEEETTSEEE
T ss_pred EEEEe-cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE---EEcCC----CCEEEEEcCCCEEE
Confidence 33333 334 899999997765322221100000 00000111 11121 24443 23688899999999
Q ss_pred EEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEE
Q 016769 244 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 323 (383)
Q Consensus 244 ~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~ 323 (383)
+||+++.......+..|..+|.++.|++++..+++++.|+.|++||+........ .. ....+..++|+|++++++
T Consensus 201 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----~~-~~~~~~~~~~~~~~~~l~ 275 (369)
T 3zwl_B 201 KYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK----YE-TDCPLNTAVITPLKEFII 275 (369)
T ss_dssp EEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE----EE-CSSCEEEEEECSSSSEEE
T ss_pred EEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeee----ec-CCCCceeEEecCCCceEE
Confidence 9999875566778888999999999999999999999999999999976442221 12 446799999999999999
Q ss_pred EEeCCC--------------cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 324 TAGWDR--------------RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 324 s~~~dg--------------~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+++.++ .+++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++|++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 276 LGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp EEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred EeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 999998 89999999999999999999999999999999999999999999999985
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=285.69 Aligned_cols=294 Identities=16% Similarity=0.186 Sum_probs=213.5
Q ss_pred CCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccc--cccccccccceeeeeeecCCCCcceeEeccc
Q 016769 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (383)
Q Consensus 7 ~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (383)
..+...+|.||++.|++++|+|+|++||||+.|++|+|||+.+++.. ..+..| ...+.+++|+| ++..|++++.
T Consensus 48 ~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~--~~~v~~v~fs~--dg~~l~~~~~ 123 (611)
T 1nr0_A 48 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF--SGPVKDISWDS--ESKRIAAVGE 123 (611)
T ss_dssp CSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS--SSCEEEEEECT--TSCEEEEEEC
T ss_pred CcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeeccc--CCceEEEEECC--CCCEEEEEEC
Confidence 34567789999999999999999999999999999999998654432 222233 34688999998 4678887765
Q ss_pred C----CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccc
Q 016769 85 D----GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFE 160 (383)
Q Consensus 85 D----~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
+ ++|++||..+. .. .+..+. . ..
T Consensus 124 ~~~~~~~v~~wd~~~~--~~----~l~gh~----------------------~-------------------------~v 150 (611)
T 1nr0_A 124 GRERFGHVFLFDTGTS--NG----NLTGQA----------------------R-------------------------AM 150 (611)
T ss_dssp CSSCSEEEEETTTCCB--CB----CCCCCS----------------------S-------------------------CE
T ss_pred CCCceeEEEEeeCCCC--cc----eecCCC----------------------C-------------------------Cc
Confidence 4 47888884221 10 000000 0 00
Q ss_pred eecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC
Q 016769 161 IIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 240 (383)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg 240 (383)
....+.++++ +++++++.|++|++||.++.+....+..+ ...+.++ .|.|+. ..+++|+.|+
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H----------~~~V~~v---~fspdg----~~las~s~D~ 212 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEH----------TKFVHSV---RYNPDG----SLFASTGGDG 212 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCC----------SSCEEEE---EECTTS----SEEEEEETTS
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccc----------cCceEEE---EECCCC----CEEEEEECCC
Confidence 0112334443 34566778999999999887766666432 1222222 355542 3688999999
Q ss_pred cEEEEeCCCCCCceeeee-------ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee-cCCCCeEE
Q 016769 241 SILVWDIRNPGIPLTAMK-------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN-LERPGISG 312 (383)
Q Consensus 241 ~i~~wdl~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~-~~~~~i~~ 312 (383)
+|++||++++. .+..+. +|..+|.+++|+|++..+++++.|++|++||++... ........ ........
T Consensus 213 ~i~lwd~~~g~-~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~--~~~~~~~~~~~~~~~~~ 289 (611)
T 1nr0_A 213 TIVLYNGVDGT-KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK--VEKTIPVGTRIEDQQLG 289 (611)
T ss_dssp CEEEEETTTCC-EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSGGGCEEE
T ss_pred cEEEEECCCCc-EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--eeeeecCCCCccceeEE
Confidence 99999998743 344453 799999999999999999999999999999997543 22211111 11123455
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+.+ +++.+++++.|++|++||...++....+.+|...|.+++|+|||++|++++.|++|++||+..
T Consensus 290 ~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 290 IIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp EEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence 556 678899999999999999999988888899999999999999999999999999999999853
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-35 Score=284.39 Aligned_cols=325 Identities=21% Similarity=0.345 Sum_probs=222.7
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
.+.+..+.+|...|++++|+|++++|++++.|+.|++||.. ++.+..+..|. ..+.+++++| ++..+++++.|++
T Consensus 252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~--~~v~~~~~~~--~~~~l~t~~~d~~ 326 (577)
T 2ymu_A 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHS--SSVWGVAFSP--DGQTIASASDDKT 326 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSC
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCC--CCeEEEEECC--CCCEEEEEeCCCe
Confidence 34567889999999999999999999999999999999964 34444443443 4578889988 4688999999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccC-CCCccceeccCcccccCccccccccCCccceecccC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
+++||...... ..+..+........+.......+.... +....+... +... .. ...+. . ......++
T Consensus 327 i~~w~~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~-~~-~~~~~---~-~v~~~~~s 394 (577)
T 2ymu_A 327 VKLWNRNGQHL-----QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLL-QT-LTGHS---S-SVRGVAFS 394 (577)
T ss_dssp EEEEETTSCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEE-EE-EECCS---S-CEEEEEEC
T ss_pred EEEEeCCCCee-----EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEE-EE-ecCCC---C-CeEEEEEC
Confidence 99999865421 111111111111111111000000000 000011100 0000 00 00000 0 01112344
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
++++ ++ ++++.++.|++||. +++.+..+..+ ...+.++ .|.|++ ..+++++.|++|++||
T Consensus 395 ~dg~-~l-~~~~~d~~v~~~~~-~~~~~~~~~~~----------~~~v~~~---~~s~d~----~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 395 PDGQ-TI-ASASDDKTVKLWNR-NGQLLQTLTGH----------SSSVWGV---AFSPDD----QTIASASDDKTVKLWN 454 (577)
T ss_dssp TTSS-CE-EEEETTSEEEEECT-TCCEEEEEECC----------SSCEEEE---EECTTS----SEEEEEETTSEEEEEE
T ss_pred CCCC-EE-EEEeCCCEEEEEeC-CCCEEEEecCC----------CCCeEEE---EECCCC----CEEEEEcCCCEEEEEE
Confidence 5554 44 45567899999996 44545444321 1122222 355542 3688999999999999
Q ss_pred CCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEe
Q 016769 247 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 326 (383)
Q Consensus 247 l~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~ 326 (383)
+.. ..+..+..|..+|.+++|++++..+++++.|+.|++||.+ +... ..+..+...|++++|+|++++|++++
T Consensus 455 ~~~--~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~---~~~~--~~~~~h~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 455 RNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLL--QTLTGHSSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp TTS--CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT---SCEE--EEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred CCC--CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC---CCEE--EEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence 753 4567788999999999999999999999999999999964 2222 34556778899999999999999999
Q ss_pred CCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 327 WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
.||+|++||. +++.+..+.+|...|.+++|+|||++|+|++.|++|++||
T Consensus 528 ~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 528 DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999996 6888899999999999999999999999999999999997
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-34 Score=260.96 Aligned_cols=317 Identities=16% Similarity=0.213 Sum_probs=216.2
Q ss_pred CCCCeeeeeecCCceeeEEEeCCCC-eEEEecC---CCeEEEeeCcccccccccccccccceeeeeeecCCC-CcceeEe
Q 016769 7 PPDPVAVLRGHRASVTDVCFHQTKP-ILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVIS 81 (383)
Q Consensus 7 ~~~~~~~l~gH~~~V~~v~f~~~~~-~L~sgs~---D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s 81 (383)
|.-....+++|.+.|++|+|+|++. +|++|+. |+.|++||+.+++....... .....+.++++.+.. ++..|++
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEE
Confidence 3334456789999999999999986 5567776 99999999987664332211 223468889999841 1578999
Q ss_pred cccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccce
Q 016769 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEI 161 (383)
Q Consensus 82 ~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (383)
++.|++|++||++++.. +...+..+.... ....+ ..
T Consensus 86 ~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v----------------------~~~~~-------------------~~ 121 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEM---PVYSVKGHKEII----------------------NAIDG-------------------IG 121 (357)
T ss_dssp EETTSCEEEECTTSCSS---CSEEECCCSSCE----------------------EEEEE-------------------ES
T ss_pred ecCCCeEEEEeCCCCCc---cEEEEEecccce----------------------EEEee-------------------cc
Confidence 99999999999987641 111111100000 00000 00
Q ss_pred ecccCCCCCceeeeccCCcceEEEEecCCCC-eeeEeccCcCCCCCCcCCCCCceeeEEE-eecCCCCCCceEEEEEeCC
Q 016769 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQ-AYLPSKSQGFVNVLAGYED 239 (383)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sg~~d 239 (383)
...+.+++. + +++++.++.|++||++++. .+..+..... .......++... .+.++ ...+++++.|
T Consensus 122 ~~~~s~~~~-~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~----~~~l~~~~~d 189 (357)
T 3i2n_A 122 GLGIGEGAP-E-IVTGSRDGTVKVWDPRQKDDPVANMEPVQG------ENKRDCWTVAFGNAYNQE----ERVVCAGYDN 189 (357)
T ss_dssp GGGCC-CCC-E-EEEEETTSCEEEECTTSCSSCSEEECCCTT------SCCCCEEEEEEECCCC-C----CCEEEEEETT
T ss_pred ccccCCCcc-E-EEEEeCCCeEEEEeCCCCCCcceeccccCC------CCCCceEEEEEEeccCCC----CCEEEEEccC
Confidence 001233443 3 3456678999999999876 4555432110 001122222211 12232 2368899999
Q ss_pred CcEEEEeCCCCCCceeeeeccccCeEEEEEeC---CCCceEEEEcCCcEEEEEccCCCCeeEEe-eeeecCCCCeEEEEE
Q 016769 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE---SCNGGISGGADQKIVLYNLDHSTGSCVIK-KEINLERPGISGTSI 315 (383)
Q Consensus 240 g~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~s~~~d~~i~~wdl~~~~~~~~~~-~~~~~~~~~i~~~~~ 315 (383)
+.|++||+++... .....|..++.++.|++ ++..+++++.|+.|++||+........+. .....+...+.+++|
T Consensus 190 ~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~ 267 (357)
T 3i2n_A 190 GDIKLFDLRNMAL--RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH 267 (357)
T ss_dssp SEEEEEETTTTEE--EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE
T ss_pred CeEEEEECccCce--eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE
Confidence 9999999987442 34466888999999999 88899999999999999987543222211 122356778999999
Q ss_pred CCCCc-EEEEEeCCCcEEEEEcCCC-------------------ceEEEecccccceeEEEEeCCCCEEE-EEeCCCcEE
Q 016769 316 RPDSK-IAATAGWDRRVRIYNYRKG-------------------SALAILKYHHATCNAVSFSSDCKLMA-SASEDSTVA 374 (383)
Q Consensus 316 ~p~~~-~l~s~~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~v~~spd~~~la-s~s~d~~i~ 374 (383)
+|+++ +|++++.||.|++||+..+ +.+..+.+|...|.+++|+|++++|+ +++.|+.|+
T Consensus 268 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~ 347 (357)
T 3i2n_A 268 LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVR 347 (357)
T ss_dssp ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEE
Confidence 99998 8999999999999999754 35667889999999999999999888 899999999
Q ss_pred EEeCCCCC
Q 016769 375 LWELYPPH 382 (383)
Q Consensus 375 ~w~~~~~~ 382 (383)
+||+..++
T Consensus 348 iw~~~~~~ 355 (357)
T 3i2n_A 348 VLIVTKLN 355 (357)
T ss_dssp EEEECC--
T ss_pred EEECCCcc
Confidence 99997543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=287.05 Aligned_cols=293 Identities=16% Similarity=0.299 Sum_probs=208.3
Q ss_pred eeeeeecCCceeeEEEeCCC-CeEEEecCCCeEEEeeCcccccc-----cccccccccceeeeeeecCCCCcceeEeccc
Q 016769 11 VAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTV-----SSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~-~~L~sgs~D~~v~vW~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (383)
...|++|++.|++|+|+|++ ++|+|||.|++|++|++...... ..+..| ...+.++++++ +++.|+|++.
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h--~~~v~~v~~s~--~g~~l~sgs~ 450 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH--SHFVEDVVLSS--DGQFALSGSW 450 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECC--SSCEEEEEECT--TSSEEEEEET
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCC--CCcEEEEEECC--CCCEEEEEeC
Confidence 34789999999999999875 79999999999999998654321 222233 34678899988 4688999999
Q ss_pred CCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 85 D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
|++|++||+.++.... .+..+. ..+ ....
T Consensus 451 Dg~v~vwd~~~~~~~~----~~~~h~----------------------~~v-------------------------~~~~ 479 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTR----RFVGHT----------------------KDV-------------------------LSVA 479 (694)
T ss_dssp TSEEEEEETTTTEEEE----EEECCS----------------------SCE-------------------------EEEE
T ss_pred CCcEEEEECCCCccee----EEeCCC----------------------CCE-------------------------EEEE
Confidence 9999999998763210 000000 000 0012
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEE
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~ 244 (383)
+++++. .+++++.|++|++||+....... +... ...+...+.|+ .|.|+.. ...+++|+.|++|++
T Consensus 480 ~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~-~~~~------~~~h~~~v~~~---~~~~~~~--~~~l~s~s~d~~v~v 545 (694)
T 3dm0_A 480 FSLDNR--QIVSASRDRTIKLWNTLGECKYT-ISEG------GEGHRDWVSCV---RFSPNTL--QPTIVSASWDKTVKV 545 (694)
T ss_dssp ECTTSS--CEEEEETTSCEEEECTTSCEEEE-ECSS------TTSCSSCEEEE---EECSCSS--SCEEEEEETTSCEEE
T ss_pred EeCCCC--EEEEEeCCCEEEEEECCCCccee-eccC------CCCCCCcEEEE---EEeCCCC--cceEEEEeCCCeEEE
Confidence 234443 34556778999999986544322 2111 00111222232 3544321 235889999999999
Q ss_pred EeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEE
Q 016769 245 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 324 (383)
Q Consensus 245 wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s 324 (383)
||+++. .....+..|...|.++.|++++..+++++.|+.|++||+.... ... .+. ....+.+++|+|++.++++
T Consensus 546 wd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~--~~~--~~~-~~~~v~~~~~sp~~~~l~~ 619 (694)
T 3dm0_A 546 WNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--KLY--SLE-ANSVIHALCFSPNRYWLCA 619 (694)
T ss_dssp EETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE--EEE--CCB-CSSCEEEEEECSSSSEEEE
T ss_pred EECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eEE--Eec-CCCcEEEEEEcCCCcEEEE
Confidence 999874 4567788999999999999999999999999999999997542 222 122 2356999999999988776
Q ss_pred EeCCCcEEEEEcCCCceEEEecccc-------------------cceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 325 AGWDRRVRIYNYRKGSALAILKYHH-------------------ATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 325 ~~~dg~i~iwd~~~~~~~~~~~~h~-------------------~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
++ |+.|++||+.+++.+..+..+. ..+.+++|||||++|++|+.||+|++|++.
T Consensus 620 ~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 620 AT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred Ec-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 55 6679999999988777664322 237889999999999999999999999985
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=265.66 Aligned_cols=300 Identities=15% Similarity=0.163 Sum_probs=211.0
Q ss_pred CCCeeeeeecCCceeeEEEeCCC-CeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCC
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~-~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (383)
.+....+.+|.+.|++++|+|++ ++|++|+.|+.|+|||+.+++....+........+.++++++. ++..|++++.|+
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~ 141 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIRG 141 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETTT
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCCC
Confidence 44567889999999999999999 8999999999999999987765544332223356888999873 357899999999
Q ss_pred eEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 87 ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
+|++||+++.. ...+.....+ ... .....+.
T Consensus 142 ~i~iwd~~~~~-----~~~~~~~~~~-------------------~~~-------------------------v~~~~~~ 172 (383)
T 3ei3_B 142 ATTLRDFSGSV-----IQVFAKTDSW-------------------DYW-------------------------YCCVDVS 172 (383)
T ss_dssp EEEEEETTSCE-----EEEEECCCCS-------------------SCC-------------------------EEEEEEE
T ss_pred EEEEEECCCCc-----eEEEeccCCC-------------------CCC-------------------------eEEEEEC
Confidence 99999997431 0010000000 000 0001122
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
+++. + +++++.++.|++||+ +++.+..+..+ ...+.++ .+.|.. ...+++|+.|++|++||
T Consensus 173 ~~~~-~-l~~~~~d~~i~i~d~-~~~~~~~~~~h----------~~~v~~~---~~~~~~---~~~l~s~~~d~~i~iwd 233 (383)
T 3ei3_B 173 VSRQ-M-LATGDSTGRLLLLGL-DGHEIFKEKLH----------KAKVTHA---EFNPRC---DWLMATSSVDATVKLWD 233 (383)
T ss_dssp TTTT-E-EEEEETTSEEEEEET-TSCEEEEEECS----------SSCEEEE---EECSSC---TTEEEEEETTSEEEEEE
T ss_pred CCCC-E-EEEECCCCCEEEEEC-CCCEEEEeccC----------CCcEEEE---EECCCC---CCEEEEEeCCCEEEEEe
Confidence 3443 3 445667899999999 45555555421 1222222 244432 22588999999999999
Q ss_pred CCCCC---CceeeeeccccCeEEEEEeC-CCCceEEEEcCCcEEEEEccCCCCeeEEeeeee---cC----------CCC
Q 016769 247 IRNPG---IPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN---LE----------RPG 309 (383)
Q Consensus 247 l~~~~---~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~---~~----------~~~ 309 (383)
+++.. ..+..+ .|..+|.++.|++ ++..+++++.|+.|++||++.......+..... .+ ...
T Consensus 234 ~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 312 (383)
T 3ei3_B 234 LRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYD 312 (383)
T ss_dssp GGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSS
T ss_pred CCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCC
Confidence 98632 233334 6899999999999 999999999999999999986554333321110 01 123
Q ss_pred eEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecc--cccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+..++|+|++++ +++.|++|++||+.+++.+..+.+ |...+.+++|+||+++|++|+ |+.|++||+..
T Consensus 313 ~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 313 LIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 445667777776 778999999999999999998987 456788889999999999998 99999999964
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=252.70 Aligned_cols=296 Identities=17% Similarity=0.211 Sum_probs=210.8
Q ss_pred CCCCCCeeeee--ecCCc--eeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeE
Q 016769 5 PPPPDPVAVLR--GHRAS--VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (383)
Q Consensus 5 ~~~~~~~~~l~--gH~~~--V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (383)
.-|..|..+|. ++.+. .++|+||+++ +||+| .|++|+|||+.+++++..+..+.+...+.++++++ +++.|+
T Consensus 8 ~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~--~~~~l~ 83 (318)
T 4ggc_A 8 YIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLA 83 (318)
T ss_dssp CCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEE
T ss_pred ccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC--CCCEEE
Confidence 34666777775 44443 4789999986 67665 69999999999888776655555455688999998 468999
Q ss_pred ecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccc
Q 016769 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFE 160 (383)
Q Consensus 81 s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
+|+.|++|++||+++++... ....+...
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~----~~~~h~~~------------------------------------------------ 111 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLR----NMTSHSAR------------------------------------------------ 111 (318)
T ss_dssp EEETTSEEEEEETTTTEEEE----EEECCSSC------------------------------------------------
T ss_pred EEECCCcEEEeecCCceeEE----EecCccce------------------------------------------------
Confidence 99999999999998764211 11000000
Q ss_pred eecccCCCCCceeeeccCCcceEEEEecCCCCe-eeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCC
Q 016769 161 IIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 239 (383)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~d 239 (383)
...+...+ . ++++++.++.+++|+...... +..+..+ .....+. .+.+. ...+++++.|
T Consensus 112 -~~~~~~~~-~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~---~~~~~----~~~l~s~~~d 171 (318)
T 4ggc_A 112 -VGSLSWNS-Y-ILSSGSRSGHIHHHDVRVAEHHVATLSGH----------SQEVCGL---RWAPD----GRHLASGGND 171 (318)
T ss_dssp -EEEEEEET-T-EEEEEETTSEEEEEETTSSSCEEEEEECC----------SSCEEEE---EECTT----SSEEEEEETT
T ss_pred -EEEeecCC-C-EEEEEecCCceEeeecCCCceeEEEEcCc----------cCceEEE---EEcCC----CCEEEEEecC
Confidence 00001111 2 345667789999999987654 3333221 1111111 23322 2368899999
Q ss_pred CcEEEEeCCCCCC---ceeeeeccccCeEEEEEeCCCCce---EEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEE
Q 016769 240 GSILVWDIRNPGI---PLTAMKVHLEPVLCLSIDESCNGG---ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGT 313 (383)
Q Consensus 240 g~i~~wdl~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~---~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~ 313 (383)
++|++||+++... .......|..+|..+.+.+....+ ++++.++.|++||........ ...+...+..+
T Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-----~~~~~~~v~~~ 246 (318)
T 4ggc_A 172 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-----AVDAHSQVCSI 246 (318)
T ss_dssp SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-----EEECSSCEEEE
T ss_pred cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-----cccceeeeeee
Confidence 9999999986432 233445677889999997766544 356678999999987543211 12344578999
Q ss_pred EECCCCcEEEEEe--CCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 314 SIRPDSKIAATAG--WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 314 ~~~p~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
.|+|+++.+++++ .|++|++||+++++.+..+.+|.+.|.+++|+|||++|||||.|++|+|||+++.
T Consensus 247 ~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 247 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999887765 7999999999999999999999999999999999999999999999999999754
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=277.90 Aligned_cols=326 Identities=21% Similarity=0.319 Sum_probs=219.2
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
++...|+||++.|++|+|+|||++||||+.|++|+|||. +++++..+..|. ..+.+++|+| ++++|++++.|++|
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~--~~V~~l~fsp--dg~~las~~~d~~i 81 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVWGVAFSP--DGQTIASASDDKTV 81 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS--SCEEEEEECT--TSSEEEEEETTSCE
T ss_pred EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCC--CCEEEEEECC--CCCEEEEEeCCCEE
Confidence 455789999999999999999999999999999999995 566666666554 4688999998 46899999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCC-CccceeccCcccccCccccccccCCccceecccCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP-KDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
++||+. ++. ...+..+........+.......+....+. ...+..... . ...............+.+
T Consensus 82 ~vWd~~-~~~----~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~-~------~~~~~~~~~~v~~~~~~~ 149 (577)
T 2ymu_A 82 KLWNRN-GQL----LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-L------LQTLTGHSSSVWGVAFSP 149 (577)
T ss_dssp EEEETT-SCE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCC-E------EEEECCCSSCEEEEEECT
T ss_pred EEEECC-CCE----EEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccc-e------eeeccCCCCceeeeeeec
Confidence 999964 321 122222111111111111100000000000 000000000 0 000000000011112233
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
++. .+ ..+..++.+++|+....... .... ......++ .+.++. ..+++++.|+.|++||.
T Consensus 150 ~~~-~~-~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~v~~~---~~~~~~----~~l~~~~~d~~v~~w~~ 209 (577)
T 2ymu_A 150 DGQ-TI-ASASDDKTVKLWNRNGQLLQ-TLTG----------HSSSVWGV---AFSPDG----QTIASASDDKTVKLWNR 209 (577)
T ss_dssp TSS-CE-EEEETTSEEEEECTTSCEEE-EEEC----------CSSCEEEE---EECTTS----SCEEEEETTSEEEEECT
T ss_pred CCc-cc-eecccccceeccccceeeee-eccC----------CCcceeee---eecCCC----CEEEEEcCCCEEEEEeC
Confidence 433 23 33455678999986544322 2211 11112221 244432 25889999999999996
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 327 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~ 327 (383)
. ...+..+..|..+|.+++|++++..+++++.|+.|++||.+. .. ...+..+...+.+++|+|+++++++++.
T Consensus 210 ~--~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~---~~--~~~~~~~~~~v~~v~~~~d~~~l~~~~~ 282 (577)
T 2ymu_A 210 N--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QL--LQTLTGHSSSVNGVAFRPDGQTIASASD 282 (577)
T ss_dssp T--SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS---CE--EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred C--CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC---CE--EEEEecCCCCEEEEEEcCCCCEEEEEeC
Confidence 4 345677889999999999999999999999999999998643 22 2234456678999999999999999999
Q ss_pred CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 328 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 328 dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
|++|++||. .++.+..+.+|...|.+++|+||+++|++++.|+.|++||+.
T Consensus 283 d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 283 DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp TSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999997 467778889999999999999999999999999999999975
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=277.52 Aligned_cols=303 Identities=15% Similarity=0.182 Sum_probs=203.1
Q ss_pred CeeeeeecCCceeeEEEeC-CCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~-~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
......+|...|+||+||| ++++||+|+.||+|+|||+.++.....+....+...|.+++|+|. ++++|+|++.|++|
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D~~v 189 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGTT 189 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSSSCE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCCCEE
Confidence 4456789999999999999 567999999999999999876654332222223356889999874 46789999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++||++++.. ..+... .. ... ......+.++
T Consensus 190 ~iwd~~~~~~-----~~~~~~------------~~---------~~~-----------------------~~~~~~~~~~ 220 (435)
T 4e54_B 190 RLQDFKGNIL-----RVFASS------------DT---------INI-----------------------WFCSLDVSAS 220 (435)
T ss_dssp EEEETTSCEE-----EEEECC------------SS---------CSC-----------------------CCCCEEEETT
T ss_pred EEeeccCCce-----eEEecc------------CC---------CCc-----------------------cEEEEEECCC
Confidence 9999975421 000000 00 000 0000112233
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
+. ++++|+.++.|++||++... +..+.. +...+.++ .|.|.. ...+++|+.|++|++||++
T Consensus 221 ~~--~l~~g~~dg~i~~wd~~~~~-~~~~~~----------h~~~v~~v---~~~p~~---~~~~~s~s~d~~v~iwd~~ 281 (435)
T 4e54_B 221 SR--MVVTGDNVGNVILLNMDGKE-LWNLRM----------HKKKVTHV---ALNPCC---DWFLATASVDQTVKIWDLR 281 (435)
T ss_dssp TT--EEEEECSSSBEEEEESSSCB-CCCSBC----------CSSCEEEE---EECTTC---SSEEEEEETTSBCCEEETT
T ss_pred CC--EEEEEeCCCcEeeeccCcce-eEEEec----------ccceEEee---eecCCC---ceEEEEecCcceeeEEecc
Confidence 33 34566778999999996533 333321 11222222 344432 2257789999999999998
Q ss_pred CCCCc--eeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecC--CCCeEEEEECCCCcEEEE
Q 016769 249 NPGIP--LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE--RPGISGTSIRPDSKIAAT 324 (383)
Q Consensus 249 ~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~~l~s 324 (383)
+.... +.....|..+|.+++|++++..+++++.|+.|++||+........+....... ...+....++|++.++++
T Consensus 282 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (435)
T 4e54_B 282 QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV 361 (435)
T ss_dssp TCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred cccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEE
Confidence 74422 23345789999999999999999999999999999997655433222111111 012234456666666666
Q ss_pred Ee------------CCCcEEEEEcCCCceEEEe-cccccceeEE-EEeCCCCEEEEEeCCCcEEEEeCCCCC
Q 016769 325 AG------------WDRRVRIYNYRKGSALAIL-KYHHATCNAV-SFSSDCKLMASASEDSTVALWELYPPH 382 (383)
Q Consensus 325 ~~------------~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v-~~spd~~~las~s~d~~i~~w~~~~~~ 382 (383)
++ .+++|++||..+++.+..+ .+|...|.++ +|||||++||+|+ |+.|+|||+.+.+
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 54 3468999999999988776 4688888887 6999999999987 7899999997643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=253.12 Aligned_cols=294 Identities=16% Similarity=0.197 Sum_probs=213.3
Q ss_pred CCCCCCC-CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeE
Q 016769 2 SKRPPPP-DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (383)
Q Consensus 2 ~~~~~~~-~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (383)
|+.|.+. ++..+|.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..| ...+.++++++ ++..++
T Consensus 1 ~~d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~--~~~v~~~~~~~--~~~~l~ 75 (313)
T 3odt_A 1 GIDPFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTG--QGFLNSVCYDS--EKELLL 75 (313)
T ss_dssp ----CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEEC--SSCEEEEEEET--TTTEEE
T ss_pred CCCccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecC--CccEEEEEECC--CCCEEE
Confidence 3455444 677899999999999999 99999999999999999999877665554444 34688889988 468899
Q ss_pred ecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccc
Q 016769 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFE 160 (383)
Q Consensus 81 s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
+++.|+++++|++.+..... +...+..+. ..
T Consensus 76 ~~~~dg~i~~~~~~~~~~~~-~~~~~~~~~----------------------~~-------------------------- 106 (313)
T 3odt_A 76 FGGKDTMINGVPLFATSGED-PLYTLIGHQ----------------------GN-------------------------- 106 (313)
T ss_dssp EEETTSCEEEEETTCCTTSC-C-CEECCCS----------------------SC--------------------------
T ss_pred EecCCCeEEEEEeeecCCCC-cccchhhcc----------------------cC--------------------------
Confidence 99999999999997643111 000000000 00
Q ss_pred eecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC
Q 016769 161 IIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 240 (383)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg 240 (383)
+..+..++ .+ +++++.++.|++|| ..+....+..+ .....++. +.+. ....+++++.|+
T Consensus 107 -i~~~~~~~-~~-l~~~~~d~~i~~~d--~~~~~~~~~~~----------~~~v~~~~---~~~~---~~~~l~~~~~d~ 165 (313)
T 3odt_A 107 -VCSLSFQD-GV-VISGSWDKTAKVWK--EGSLVYNLQAH----------NASVWDAK---VVSF---SENKFLTASADK 165 (313)
T ss_dssp -EEEEEEET-TE-EEEEETTSEEEEEE--TTEEEEEEECC----------SSCEEEEE---EEET---TTTEEEEEETTS
T ss_pred -EEEEEecC-CE-EEEEeCCCCEEEEc--CCcEEEecccC----------CCceeEEE---EccC---CCCEEEEEECCC
Confidence 00001112 23 34556789999999 44444444321 11222222 2221 112588999999
Q ss_pred cEEEEeCCCCCCceeeeec-cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC
Q 016769 241 SILVWDIRNPGIPLTAMKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 319 (383)
Q Consensus 241 ~i~~wdl~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 319 (383)
.|++||... ....+.. |..++.++.+++++. +++++.|+.|++||++.... . ..+..+...+.+++|+|++
T Consensus 166 ~i~i~d~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~--~--~~~~~~~~~i~~~~~~~~~ 237 (313)
T 3odt_A 166 TIKLWQNDK---VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV--L--RTYEGHESFVYCIKLLPNG 237 (313)
T ss_dssp CEEEEETTE---EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE--E--EEEECCSSCEEEEEECTTS
T ss_pred CEEEEecCc---eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh--h--hhhhcCCceEEEEEEecCC
Confidence 999999443 3455555 888999999999887 89999999999999975432 1 2344566789999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 320 KIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 320 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
.+++++.||+|++||+.+++.+..+..|...|.+++|+|+++ +++++.|+.|++||+..
T Consensus 238 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 238 -DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp -CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred -CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 588999999999999999999999999999999999999998 66799999999999864
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=265.78 Aligned_cols=308 Identities=12% Similarity=0.161 Sum_probs=218.2
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccc------cccccccccccceeeeeeecCC--CCc---ce
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR------TVSSSWVHSAAHGIVSVATGPS--IGL---NK 78 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~---~~ 78 (383)
...++++|++.|++|+|+| ++|++|+.||.|++|++.+.+ .+..+..|. ..+.++.+.++ .++ ..
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK--SGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT--TCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCC--CcEEEEEEecccccCCccccE
Confidence 4567889999999999999 799999999999999998776 344443333 45788888872 015 78
Q ss_pred eEecccCCeEEEeecCCCCCCCCC-eeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCC
Q 016769 79 VISQGRDGTVKCWDIENGGLSSNP-SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNR 157 (383)
Q Consensus 79 l~s~~~D~ti~~Wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (383)
|++++.|++|++||++++...... ...+..+. .... ...
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~----------~~~~-------~~~----------------------- 123 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLD----------SDMK-------KHS----------------------- 123 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSC----------TTGG-------GSC-----------------------
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccc----------cccC-------CCc-----------------------
Confidence 999999999999999876421100 00000000 0000 000
Q ss_pred ccceecccC----CCCCceeeeccCCcceEEEEecCC------CCeee-----EeccCcCCCCCCcCCCCCceeeEEEee
Q 016769 158 SFEIIDDVP----AEGPKYMAVAGEQLSEVEIWDLNT------AERCT-----RLHQNSCGGSPNFSSKGRGMCMAVQAY 222 (383)
Q Consensus 158 ~~~~~~~~~----~~~~~~~~~~g~~~~~i~~Wdl~~------~~~~~-----~~~~~~~~~s~~~~~~~~~~~~~~~~~ 222 (383)
.....+. +++ ++++++++.++.|++||+++ .+.+. .+..... ....+.....++. +
T Consensus 124 --v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~---~ 194 (397)
T 1sq9_A 124 --FWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE---SPMTPSQFATSVD---I 194 (397)
T ss_dssp --EEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEEC---CSSSSCCCCCEEE---E
T ss_pred --EEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeec---cccCCCCCceEEE---E
Confidence 0001122 333 34144556789999999988 55443 3321000 0001112222322 4
Q ss_pred cCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeec---c---ccCeEEEEEeCCCCceEEEEcC---CcEEEEEccCC
Q 016769 223 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV---H---LEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHS 293 (383)
Q Consensus 223 ~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~---h---~~~v~~~~~~~~~~~~~s~~~d---~~i~~wdl~~~ 293 (383)
.+. + .+++++.|+.|++||+++ ..++..+.. | ..++.++.|++++..+++++.| +.|++||+...
T Consensus 195 ~~~---~--~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 195 SER---G--LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 268 (397)
T ss_dssp CTT---S--EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred CCC---c--eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 432 2 588999999999999987 445677777 8 8999999999999999999999 99999999754
Q ss_pred CCeeEEeeeeec-------------CCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEec------cc------
Q 016769 294 TGSCVIKKEINL-------------ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK------YH------ 348 (383)
Q Consensus 294 ~~~~~~~~~~~~-------------~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~h------ 348 (383)
.... .+.. +...+.+++|+|++++|++++.|++|++||+.+++.+..+. +|
T Consensus 269 ~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (397)
T 1sq9_A 269 ERIG----SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILA 344 (397)
T ss_dssp CEEE----EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCC
T ss_pred cccc----eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhc
Confidence 3222 2333 56789999999999999999999999999999999999998 88
Q ss_pred ---------ccceeEEEEeCCC----------CEEEEEeCCCcEEEEeCCC
Q 016769 349 ---------HATCNAVSFSSDC----------KLMASASEDSTVALWELYP 380 (383)
Q Consensus 349 ---------~~~v~~v~~spd~----------~~las~s~d~~i~~w~~~~ 380 (383)
...|.+++|+|++ ++|++|+.|+.|++||+..
T Consensus 345 g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 345 VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred cccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 9999999999998 7999999999999999853
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=274.45 Aligned_cols=312 Identities=16% Similarity=0.268 Sum_probs=211.3
Q ss_pred CCCeeee-eecCCceeeEEEeC-CCCeEEEecCCCeEEEeeCcc---cccccccccccccceeeeeeecCCCCcceeEec
Q 016769 8 PDPVAVL-RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ---HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (383)
Q Consensus 8 ~~~~~~l-~gH~~~V~~v~f~~-~~~~L~sgs~D~~v~vW~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (383)
-+++..| ++|.+.|++|+|+| ++++|+||+.||+|+|||+.+ +..............+.++++.+ ++..|+++
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~ 129 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP--NFDAFAVS 129 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT--TSSEEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC--CCCEEEEE
Confidence 3456777 89999999999999 999999999999999999876 33221111112335688999998 46889999
Q ss_pred ccCCeEEEeecC---CCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCcc
Q 016769 83 GRDGTVKCWDIE---NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSF 159 (383)
Q Consensus 83 ~~D~ti~~Wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (383)
+.|++|++||++ ++... .... .+ +...+.-.+.. ... ...
T Consensus 130 s~dg~i~vwd~~~~~~~~~~----~~~~---~~-~i~~~~~~~~~------~~~-----------------------~~~ 172 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEV----KFLN---CE-CIRKINLKNFG------KNE-----------------------YAV 172 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEE----EEEE---EE-EEEEEEGGGGS------SCC-----------------------CEE
T ss_pred eCCCEEEEEEeccccCCcee----eccc---cc-eeEEEEccCcc------ccc-----------------------Cce
Confidence 999999999995 33210 0000 00 00000000000 000 000
Q ss_pred ceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCC
Q 016769 160 EIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 239 (383)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~d 239 (383)
.......+++ . ++++++.++.|++||+++++.+..+.... +...+.++ .+.|. ...+++|+.|
T Consensus 173 ~~~~~~~~~~-~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------h~~~v~~~---~~s~~----~~~l~s~~~d 235 (437)
T 3gre_A 173 RMRAFVNEEK-S-LLVALTNLSRVIIFDIRTLERLQIIENSP--------RHGAVSSI---CIDEE----CCVLILGTTR 235 (437)
T ss_dssp EEEEEECSSC-E-EEEEEETTSEEEEEETTTCCEEEEEECCG--------GGCCEEEE---EECTT----SCEEEEEETT
T ss_pred EEEEEEcCCC-C-EEEEEeCCCeEEEEeCCCCeeeEEEccCC--------CCCceEEE---EECCC----CCEEEEEcCC
Confidence 0000011222 3 44556778999999999998877775310 11222232 24443 2368899999
Q ss_pred CcEEEEeCCCCCCceeeee-ccccCeEEEEEeC----CCCceEEEEcCCcEEEEEccCCCCeeEEeee------------
Q 016769 240 GSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDE----SCNGGISGGADQKIVLYNLDHSTGSCVIKKE------------ 302 (383)
Q Consensus 240 g~i~~wdl~~~~~~~~~~~-~h~~~v~~~~~~~----~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~------------ 302 (383)
|+|++||+++ ..++..+. .|..+|.++.+.+ ++..+++++.|+.|++||++.......+...
T Consensus 236 g~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (437)
T 3gre_A 236 GIIDIWDIRF-NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI 314 (437)
T ss_dssp SCEEEEETTT-TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB
T ss_pred CeEEEEEcCC-ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc
Confidence 9999999997 44556554 6778999996654 4557899999999999999754322222100
Q ss_pred --------ee--cCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecc-------------------------
Q 016769 303 --------IN--LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY------------------------- 347 (383)
Q Consensus 303 --------~~--~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------- 347 (383)
.. .+...|.+++|+ ++++|++++.|++|++||+.+++....+.+
T Consensus 315 ~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (437)
T 3gre_A 315 EKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMK 393 (437)
T ss_dssp CSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC
T ss_pred ccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecc
Confidence 00 134458889999 779999999999999999998877666654
Q ss_pred ------------cccceeEEEEeCC--CCEEEEEeCCCcEEEEe
Q 016769 348 ------------HHATCNAVSFSSD--CKLMASASEDSTVALWE 377 (383)
Q Consensus 348 ------------h~~~v~~v~~spd--~~~las~s~d~~i~~w~ 377 (383)
|...|.+++|+++ +++|++|+.||+|+||+
T Consensus 394 ~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 394 RTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 77999999999999996
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=260.49 Aligned_cols=304 Identities=17% Similarity=0.238 Sum_probs=213.4
Q ss_pred CCeeeeeecCCceeeEEEeC-CCCeEEEecCCCeEEEeeCccccccccccc-----------ccccceeeeeeecCCCCc
Q 016769 9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWV-----------HSAAHGIVSVATGPSIGL 76 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~-~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 76 (383)
+....+.+|.+.|++|+|+| ++++|++|+.||.|++||+.++........ ......+.++.+.+. ++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 112 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DT 112 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-CT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC-CC
Confidence 45678899999999999999 999999999999999999987665443321 012346888899874 35
Q ss_pred ceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccC
Q 016769 77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESN 156 (383)
Q Consensus 77 ~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (383)
..|++++.|++|++||+.+++... .+ .. ... ....
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~----~~----------~~-~~~------------~~~~------------------ 147 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTAD----VF----------NF-EET------------VYSH------------------ 147 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEE----EE----------EC-SSC------------EEEE------------------
T ss_pred cEEEEEeCCCeEEEeeCCCCccce----ec----------cC-CCc------------eeee------------------
Confidence 789999999999999998763210 00 00 000 0000
Q ss_pred CccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEE
Q 016769 157 RSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 236 (383)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 236 (383)
. ......++ . ++++++.++.|++||+++++.+..+..+ ...+.++ .+.|.. ...+++|
T Consensus 148 ---~-~~~~~~~~-~-~~~~~~~~~~v~~~d~~~~~~~~~~~~~----------~~~v~~~---~~~~~~---~~ll~~~ 205 (408)
T 4a11_B 148 ---H-MSPVSTKH-C-LVAVGTRGPKVQLCDLKSGSCSHILQGH----------RQEILAV---SWSPRY---DYILATA 205 (408)
T ss_dssp ---E-ECSSCSSC-C-EEEEEESSSSEEEEESSSSCCCEEECCC----------CSCEEEE---EECSSC---TTEEEEE
T ss_pred ---E-eecCCCCC-c-EEEEEcCCCeEEEEeCCCcceeeeecCC----------CCcEEEE---EECCCC---CcEEEEE
Confidence 0 00001111 2 3455667899999999998877666431 1222222 244432 2247789
Q ss_pred eCCCcEEEEeCCCCCCceeee---------------eccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEee
Q 016769 237 YEDGSILVWDIRNPGIPLTAM---------------KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK 301 (383)
Q Consensus 237 ~~dg~i~~wdl~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~ 301 (383)
+.||.|++||+++...++..+ ..|..+|.++.|++++..+++++.|+.|++||+...........
T Consensus 206 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 285 (408)
T 4a11_B 206 SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG 285 (408)
T ss_dssp ETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC
T ss_pred cCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc
Confidence 999999999998755334333 56888999999999999999999999999999976543221111
Q ss_pred eee-cCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 302 EIN-LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 302 ~~~-~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
... .....+........+..++.++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++||+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 286 KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 110 0111122222233445667778899999999999999999999999999999999999999999999999999864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=262.79 Aligned_cols=299 Identities=13% Similarity=0.167 Sum_probs=210.8
Q ss_pred eeeecCCceeeEEEeCC----CCeEEEecCCCeEEEeeCccccccccccccc---ccceeeeeeecCCCC--cceeEecc
Q 016769 13 VLRGHRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHS---AAHGIVSVATGPSIG--LNKVISQG 83 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~----~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~l~s~~ 83 (383)
.+.+|.++|++|+|+|+ ...+++++.++.|++||..+++.+..+..+. ....+.+++++++.. +..|++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 45599999999999984 4567777888899999998776655544332 224578888887422 46899999
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
.|++|++||+++++.. ..+..+. ..+ ...
T Consensus 93 ~dg~i~v~d~~~~~~~----~~~~~~~----------------------~~i-------------------------~~~ 121 (366)
T 3k26_A 93 SRGIIRIINPITMQCI----KHYVGHG----------------------NAI-------------------------NEL 121 (366)
T ss_dssp TTCEEEEECTTTCCEE----EEEESCC----------------------SCE-------------------------EEE
T ss_pred CCCEEEEEEchhceEe----eeecCCC----------------------CcE-------------------------EEE
Confidence 9999999999876421 0110000 000 001
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
.+.+.+..+ +++++.++.|++||+++++.+..+... ..+...+.++ .+.|+. ..+++++.||.|+
T Consensus 122 ~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~v~~~---~~~~~~----~~l~~~~~dg~i~ 186 (366)
T 3k26_A 122 KFHPRDPNL-LLSVSKDHALRLWNIQTDTLVAIFGGV-------EGHRDEVLSA---DYDLLG----EKIMSCGMDHSLK 186 (366)
T ss_dssp EECSSCTTE-EEEEETTSCEEEEETTTTEEEEEECST-------TSCSSCEEEE---EECTTS----SEEEEEETTSCEE
T ss_pred EECCCCCCE-EEEEeCCCeEEEEEeecCeEEEEeccc-------ccccCceeEE---EECCCC----CEEEEecCCCCEE
Confidence 122312233 445667899999999998877666310 0111222222 244432 3688999999999
Q ss_pred EEeCCCCCCc---------------------------eeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCC-
Q 016769 244 VWDIRNPGIP---------------------------LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG- 295 (383)
Q Consensus 244 ~wdl~~~~~~---------------------------~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~- 295 (383)
+||+++.... ......|..+|.++.|+ +..+++++.|+.|++||+.....
T Consensus 187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~ 264 (366)
T 3k26_A 187 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDD 264 (366)
T ss_dssp EEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCC
T ss_pred EEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccc
Confidence 9999863210 11222388999999998 56889999999999999875432
Q ss_pred ---------eeEEeeeeecCCCCeEEEEECCC--CcEEEEEeCCCcEEEEEcCCCc----eEEEeccc--ccceeEEEEe
Q 016769 296 ---------SCVIKKEINLERPGISGTSIRPD--SKIAATAGWDRRVRIYNYRKGS----ALAILKYH--HATCNAVSFS 358 (383)
Q Consensus 296 ---------~~~~~~~~~~~~~~i~~~~~~p~--~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~h--~~~v~~v~~s 358 (383)
..........+...+.+++|+|+ +++|++++.||.|++||+.+++ ....+.+| ...|.+++|+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 344 (366)
T 3k26_A 265 IDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFS 344 (366)
T ss_dssp GGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEEC
T ss_pred ccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeC
Confidence 11122334556667899999999 9999999999999999998875 34477777 7899999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCC
Q 016769 359 SDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 359 pd~~~las~s~d~~i~~w~~~ 379 (383)
|++++|++|+.||.|++||+.
T Consensus 345 ~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 345 RDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCeEEEEeCCCEEEEEEec
Confidence 999999999999999999973
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=247.67 Aligned_cols=287 Identities=15% Similarity=0.227 Sum_probs=212.1
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccccccccc---ccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV---HSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
...+|.+.|++++|+|++++|++++ |+.|++||+.+++....... ......+.++++.+ +++.+++++.|++|+
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~ 122 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLS 122 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEE
Confidence 4458999999999999999999999 99999999977654332221 12335688899998 468899999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+||+++++... .. .+.. .. ..+ ....+.+++
T Consensus 123 ~~d~~~~~~~~--~~------------~~~~-~~---------~~i-------------------------~~~~~~~~~ 153 (337)
T 1gxr_A 123 IWDLAAPTPRI--KA------------ELTS-SA---------PAC-------------------------YALAISPDS 153 (337)
T ss_dssp EEECCCC--EE--EE------------EEEC-SS---------SCE-------------------------EEEEECTTS
T ss_pred EEECCCCCcce--ee------------eccc-CC---------Cce-------------------------EEEEECCCC
Confidence 99998653100 00 0000 00 000 001122333
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
+++ ++++.++.|++||+++++.+..+..+ .....++ .+.|+. ..+++++.|+.|++||+++
T Consensus 154 -~~l-~~~~~dg~v~~~d~~~~~~~~~~~~~----------~~~i~~~---~~~~~~----~~l~~~~~dg~i~~~d~~~ 214 (337)
T 1gxr_A 154 -KVC-FSCCSDGNIAVWDLHNQTLVRQFQGH----------TDGASCI---DISNDG----TKLWTGGLDNTVRSWDLRE 214 (337)
T ss_dssp -SEE-EEEETTSCEEEEETTTTEEEEEECCC----------SSCEEEE---EECTTS----SEEEEEETTSEEEEEETTT
T ss_pred -CEE-EEEeCCCcEEEEeCCCCceeeeeecc----------cCceEEE---EECCCC----CEEEEEecCCcEEEEECCC
Confidence 233 44566889999999998877666431 1122222 244432 3688999999999999987
Q ss_pred CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCC
Q 016769 250 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 329 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg 329 (383)
.. .+..+ .|..++.++.+++++..+++++.|+.|++||++.... .....+...+.+++|+|++++|++++.||
T Consensus 215 ~~-~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 215 GR-QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp TE-EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----EEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred Cc-eEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----EEEcCCccceeEEEECCCCCEEEEecCCC
Confidence 43 33333 4677899999999999999999999999999976431 12345667899999999999999999999
Q ss_pred cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 330 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 330 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++
T Consensus 288 ~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 288 LLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred cEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999999999887544 58889999999999999999999999999997
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=260.20 Aligned_cols=257 Identities=18% Similarity=0.168 Sum_probs=168.8
Q ss_pred eeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccc--cccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
.++.+|.+.|++++|+|+|++|+|||.|++|+|||+.+++ ++..+..|. ..+.+++|.+..+++.|+|++.|++|+
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~--~~V~~v~~~~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHE--GPVWQVAWAHPMYGNILASCSYDRKVI 84 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCS--SCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCC--ccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence 3578999999999999999999999999999999987654 233444443 457888887532357899999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+||++++.... ... + .... ..+ ....+.+++
T Consensus 85 iWd~~~~~~~~--~~~------------~-~~h~---------~~V-------------------------~~v~~~p~~ 115 (316)
T 3bg1_A 85 IWREENGTWEK--SHE------------H-AGHD---------SSV-------------------------NSVCWAPHD 115 (316)
T ss_dssp EECCSSSCCCE--EEE------------E-CCCS---------SCC-------------------------CEEEECCTT
T ss_pred EEECCCCcceE--EEE------------c-cCCC---------Cce-------------------------EEEEECCCC
Confidence 99987652100 000 0 0000 000 000011110
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
... .+++|+.|++|++||++.
T Consensus 116 ~g~-----------------------------------------------------------~lasgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 116 YGL-----------------------------------------------------------ILACGSSDGAISLLTYTG 136 (316)
T ss_dssp TCS-----------------------------------------------------------CEEEECSSSCEEEEEECS
T ss_pred CCc-----------------------------------------------------------EEEEEcCCCCEEEEecCC
Confidence 001 244455555555555543
Q ss_pred CCCc--eeeeeccccCeEEEEEeCC-----------------CCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 250 PGIP--LTAMKVHLEPVLCLSIDES-----------------CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 250 ~~~~--~~~~~~h~~~v~~~~~~~~-----------------~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
.... ...+..|...+.++.|++. +..+++|+.|+.|++||++... .......+..|...|
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V 215 (316)
T 3bg1_A 137 EGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWV 215 (316)
T ss_dssp SSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCE
T ss_pred CCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCce
Confidence 2110 1223345555555555544 3578999999999999996432 111223455677889
Q ss_pred EEEEECCCC----cEEEEEeCCCcEEEEEcCCCc----eEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 311 SGTSIRPDS----KIAATAGWDRRVRIYNYRKGS----ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 311 ~~~~~~p~~----~~l~s~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.+++|+|++ ++|++++.|++|++||+.+.. ....+..|...|.+++|+|++++||+|+.|++|++|+..
T Consensus 216 ~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 216 RDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999999986 799999999999999997631 223456789999999999999999999999999999975
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-34 Score=266.06 Aligned_cols=305 Identities=17% Similarity=0.226 Sum_probs=216.2
Q ss_pred ecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcc----cccccccccccccceeeeeeecCCCCcceeEecccCCeEEEe
Q 016769 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~W 91 (383)
+|.+.|++++|+|++++|++|+.|+.|++|++.+ .+.+..+..|. ..+.++.+.++ ++..|++++.|++|++|
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~-~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHS--SSVKTVKFNAK-QDNVLASGGNNGEIFIW 141 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS--SCCCEEEECSS-STTBEEEECSSSCEEBC
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCc--cceEEEEEcCC-CCCEEEEEcCCCeEEEE
Confidence 6999999999999999999999999999999976 23344433333 45788899884 35789999999999999
Q ss_pred ecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCc
Q 016769 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPK 171 (383)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (383)
|+.++............. . . ..+.. ......+.+++..
T Consensus 142 d~~~~~~~~~~~~~~~~~------------~-----~---------------------~~~~~----~v~~~~~~~~~~~ 179 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTPG------------Q-----S---------------------MSSVD----EVISLAWNQSLAH 179 (416)
T ss_dssp BTTTTSSCTTTCCCBCCC------------C-----S---------------------CCSSC----CCCEEEECSSCTT
T ss_pred ECCCCccccccccccccc------------c-----c---------------------cCCCC----CeeEEEeCCCCCc
Confidence 998764110000000000 0 0 00000 0001122344334
Q ss_pred eeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC---cEEEEeCC
Q 016769 172 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWDIR 248 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg---~i~~wdl~ 248 (383)
+ +++++.++.|++||+++++.+..+...... ........++ .+.|.. ...+++++.|+ .|++||++
T Consensus 180 ~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~~~~~v~~~---~~~~~~---~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 180 V-FASAGSSNFASIWDLKAKKEVIHLSYTSPN----SGIKQQLSVV---EWHPKN---STRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp E-EEEESSSSCEEEEETTTTEEEEEECCCCCS----SCCCCCEEEE---EECSSC---TTEEEEEECCSSSCCCCEEETT
T ss_pred E-EEEEcCCCCEEEEECCCCCcceEEeccccc----cccCCceEEE---EECCCC---CCEEEEEECCCCCceEEEEeCC
Confidence 4 445567899999999998877666532100 0001222222 344432 23588899998 99999999
Q ss_pred CCCCceeeee-ccccCeEEEEEeC-CCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC-cEEEEE
Q 016769 249 NPGIPLTAMK-VHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KIAATA 325 (383)
Q Consensus 249 ~~~~~~~~~~-~h~~~v~~~~~~~-~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~l~s~ 325 (383)
+...+...+. .|...|.++.|++ ++..+++++.|+.|++||++.... ...+..+...+.+++|+|++ ++|+++
T Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ----LSQFPARGNWCFKTKFAPEAPDLFACA 324 (416)
T ss_dssp STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE----EEEEECSSSCCCCEEECTTCTTEEEEC
T ss_pred CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc----ceeecCCCCceEEEEECCCCCCEEEEE
Confidence 8656677777 8999999999998 888899999999999999875432 22344566789999999999 899999
Q ss_pred eCCCcEEEEEcCCCceEEEe-----------------------------------cccccceeEEEEeCCCCEEEEEeCC
Q 016769 326 GWDRRVRIYNYRKGSALAIL-----------------------------------KYHHATCNAVSFSSDCKLMASASED 370 (383)
Q Consensus 326 ~~dg~i~iwd~~~~~~~~~~-----------------------------------~~h~~~v~~v~~spd~~~las~s~d 370 (383)
+.|++|++||+.+++..... ..|...+.+++|+|||++||+|+.|
T Consensus 325 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d 404 (416)
T 2pm9_A 325 SFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDG 404 (416)
T ss_dssp CSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTS
T ss_pred ecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCC
Confidence 99999999999775432111 1167788899999999999999999
Q ss_pred CcEEEEeCCC
Q 016769 371 STVALWELYP 380 (383)
Q Consensus 371 ~~i~~w~~~~ 380 (383)
+.|+||++..
T Consensus 405 ~~v~~w~~~~ 414 (416)
T 2pm9_A 405 KGVSITNPKI 414 (416)
T ss_dssp SCBCCBCCCC
T ss_pred CeEEEEEecc
Confidence 9999999964
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=257.26 Aligned_cols=295 Identities=16% Similarity=0.246 Sum_probs=211.2
Q ss_pred CCCCCeeeeeecCCceeeEEEeCC---CCeEEEecCCCeEEEeeCcc-cccc-cccccccccceeeeeeecCCCCcceeE
Q 016769 6 PPPDPVAVLRGHRASVTDVCFHQT---KPILFAGTTGGELRIWDTVQ-HRTV-SSSWVHSAAHGIVSVATGPSIGLNKVI 80 (383)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~v~f~~~---~~~L~sgs~D~~v~vW~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (383)
.|.+++..+.+|.+.|++|+|+|+ |++|++|+.||.|+|||+.+ ++.+ ..+..| ...+.++++.+ ++..|+
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h--~~~v~~~~~~~--~~~~l~ 102 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH--TGPVLDVCWSD--DGSKVF 102 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEEC--SSCEEEEEECT--TSSEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccc--cCCEEEEEECc--CCCEEE
Confidence 566788899999999999999999 69999999999999999986 3333 333333 34688899998 468899
Q ss_pred ecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccc
Q 016769 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFE 160 (383)
Q Consensus 81 s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
+++.|++|++||++++... ....+ .. .+.
T Consensus 103 s~~~dg~v~iwd~~~~~~~-----~~~~~----------~~------------~v~------------------------ 131 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAI-----QIAQH----------DA------------PVK------------------------ 131 (368)
T ss_dssp EEETTSEEEEEETTTTEEE-----EEEEC----------SS------------CEE------------------------
T ss_pred EEcCCCcEEEEEcCCCCce-----eeccc----------cC------------ceE------------------------
Confidence 9999999999999876311 00000 00 000
Q ss_pred eeccc--CCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeC
Q 016769 161 IIDDV--PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 238 (383)
Q Consensus 161 ~~~~~--~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~ 238 (383)
...+ .+++ . ++++++.|+.|++||+++++.+..+..+. ...+.. +.. ..+++++.
T Consensus 132 -~~~~~~~~~~-~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~~~---~~~------~~~~~~~~ 188 (368)
T 3mmy_A 132 -TIHWIKAPNY-S-CVMTGSWDKTLKFWDTRSSNPMMVLQLPE-----------RCYCAD---VIY------PMAVVATA 188 (368)
T ss_dssp -EEEEEECSSC-E-EEEEEETTSEEEEECSSCSSCSEEEECSS-----------CEEEEE---EET------TEEEEEEG
T ss_pred -EEEEEeCCCC-C-EEEEccCCCcEEEEECCCCcEEEEEecCC-----------CceEEE---ecC------CeeEEEeC
Confidence 0011 1222 2 34456678999999999988776665321 122221 111 14678889
Q ss_pred CCcEEEEeCCCCCCceeeee-ccccCeEEEEEeCCCCc----eEEEEcCCcEEEEEccCCCC-eeEEeeeeecCCC----
Q 016769 239 DGSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESCNG----GISGGADQKIVLYNLDHSTG-SCVIKKEINLERP---- 308 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~-~h~~~v~~~~~~~~~~~----~~s~~~d~~i~~wdl~~~~~-~~~~~~~~~~~~~---- 308 (383)
++.+++||++.......... .+...+.++.+...... +++++.|+.|++||++.... ... .....+..
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~--~~~~~~~~~~~~ 266 (368)
T 3mmy_A 189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN--FTFKCHRSNGTN 266 (368)
T ss_dssp GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS--EEEECSEEC---
T ss_pred CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc--eeeeeeeccccc
Confidence 99999999987543332222 22344555655444333 89999999999999986532 111 11222222
Q ss_pred --------CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 309 --------GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 309 --------~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
.+.+++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|||++||+|+.|+..+.|++++
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp -CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 599999999999999999999999999999999999999999999999999999999999999877777654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=254.71 Aligned_cols=279 Identities=17% Similarity=0.250 Sum_probs=202.4
Q ss_pred eeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCC
Q 016769 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100 (383)
Q Consensus 21 V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~ 100 (383)
.+.|+|+++ ++|+.| .|++|+|||+.++++...+..+.+...|.+++|++ ++++|++|+.|++|++||+++++...
T Consensus 108 ~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp--dg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp CBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC--CCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 456899976 477765 59999999999887766554444445689999998 47899999999999999998764211
Q ss_pred CCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCc
Q 016769 101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQL 180 (383)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 180 (383)
.+..+... +..+..++ . ++++|+.+
T Consensus 184 ----~~~~h~~~-------------------------------------------------v~~~s~~~-~-~l~sgs~d 208 (420)
T 4gga_A 184 ----NMTSHSAR-------------------------------------------------VGSLSWNS-Y-ILSSGSRS 208 (420)
T ss_dssp ----EECCCSSC-------------------------------------------------EEEEEEET-T-EEEEEETT
T ss_pred ----EEeCCCCc-------------------------------------------------eEEEeeCC-C-EEEEEeCC
Confidence 10000000 00011111 2 45667788
Q ss_pred ceEEEEecCCCCe-eeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC---ceee
Q 016769 181 SEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI---PLTA 256 (383)
Q Consensus 181 ~~i~~Wdl~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~---~~~~ 256 (383)
+.+++||...... +..+..+ ...... ..+.+.. ..+++++.|+.|++||+.+... .+..
T Consensus 209 ~~i~~~d~~~~~~~~~~~~~h----------~~~~~~---~~~~~~g----~~l~s~~~D~~v~i~~~~~~~~~~~~~~~ 271 (420)
T 4gga_A 209 GHIHHHDVRVAEHHVATLSGH----------SQEVCG---LRWAPDG----RHLASGGNDNLVNVWPSAPGEGGWVPLQT 271 (420)
T ss_dssp SEEEEEETTSSSCEEEEEECC----------SSCEEE---EEECTTS----SEEEEEETTSCEEEEESSCCSSCSCCSEE
T ss_pred CceeEeeecccceeeEEeccc----------ccceee---eeecCCC----CeeeeeeccccceEEeeccccccceeeee
Confidence 9999999987653 3333321 111111 1233332 3588999999999999976432 3455
Q ss_pred eeccccCeEEEEEeCCCCce-EE--EEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEe--CCCcE
Q 016769 257 MKVHLEPVLCLSIDESCNGG-IS--GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG--WDRRV 331 (383)
Q Consensus 257 ~~~h~~~v~~~~~~~~~~~~-~s--~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~--~dg~i 331 (383)
...|..+|.++.|.+....+ ++ |+.|+.|++||+.... ... ... ....+.++.|+|+++.+++++ .|++|
T Consensus 272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~--~~~--~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I 346 (420)
T 4gga_A 272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--CLS--AVD-AHSQVCSILWSPHYKELISGHGFAQNQL 346 (420)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE--EEE--EEE-CSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc--cce--eec-cccceeeeeecCCCCeEEEEEecCCCEE
Confidence 67788999999998876654 33 4579999999997543 222 222 235688999999999888776 79999
Q ss_pred EEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 332 RIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 332 ~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
++||+.+++++..+.+|...|.+++|+|||++|||||.|++|+|||+++
T Consensus 347 ~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 347 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 9999999999999999999999999999999999999999999999974
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=256.91 Aligned_cols=297 Identities=15% Similarity=0.180 Sum_probs=213.2
Q ss_pred ecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCC
Q 016769 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~ 95 (383)
+|.+.|++++|+|++++|++|+.|+.|++|| .+++.+..+..|. ..+.++.+.+ ++..|++++.|+++++||+++
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHR--APIVSVKWNK--DGTHIISMDVENVTILWNVIS 180 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCC--SCEEEEEECT--TSSEEEEEETTCCEEEEETTT
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCC--ccEEEEEECC--CCCEEEEEecCCeEEEEECCC
Confidence 3789999999999999999999999999999 4455555444343 4578889988 467899999999999999987
Q ss_pred CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeee
Q 016769 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAV 175 (383)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (383)
+.... .+..... ..... . .. .. ... ........+.++ . .+ +
T Consensus 181 ~~~~~----~~~~~~~----------~~~~~-~------~~--~~---------~~~----~~~~~~~~~~~~-~-~~-~ 221 (425)
T 1r5m_A 181 GTVMQ----HFELKET----------GGSSI-N------AE--NH---------SGD----GSLGVDVEWVDD-D-KF-V 221 (425)
T ss_dssp TEEEE----EECCC-----------------------------------------------CCCBSCCEEEET-T-EE-E
T ss_pred CcEEE----Eeecccc----------Cccce-e------ec--cc---------cCC----cceeeEEEEcCC-C-EE-E
Confidence 63211 1000000 00000 0 00 00 000 000000011122 2 23 4
Q ss_pred ccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCcee
Q 016769 176 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 255 (383)
Q Consensus 176 ~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~ 255 (383)
+++.++.|++||+++++.+..+..+ .....++ .+.+.. ..+++++.|+.|++||+++. ....
T Consensus 222 ~~~~~g~i~~~d~~~~~~~~~~~~~----------~~~i~~~---~~~~~~----~~l~~~~~d~~i~i~d~~~~-~~~~ 283 (425)
T 1r5m_A 222 IPGPKGAIFVYQITEKTPTGKLIGH----------HGPISVL---EFNDTN----KLLLSASDDGTLRIWHGGNG-NSQN 283 (425)
T ss_dssp EECGGGCEEEEETTCSSCSEEECCC----------SSCEEEE---EEETTT----TEEEEEETTSCEEEECSSSB-SCSE
T ss_pred EEcCCCeEEEEEcCCCceeeeeccC----------CCceEEE---EECCCC----CEEEEEcCCCEEEEEECCCC-ccce
Confidence 4566899999999998776655421 1122222 244432 26889999999999999874 4466
Q ss_pred eeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEE
Q 016769 256 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 335 (383)
Q Consensus 256 ~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd 335 (383)
.+..|..++.++.|++++ .+++++.|+.|++||+.... .. .....+...+.+++|+|++++|++++.||.|++||
T Consensus 284 ~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~--~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 284 CFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT--LL--ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp EECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE--EE--EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc--Ee--EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 777899999999999988 88999999999999997543 22 23345567899999999999999999999999999
Q ss_pred cCCCc--------------------eEEEeccccc--ceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 336 YRKGS--------------------ALAILKYHHA--TCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 336 ~~~~~--------------------~~~~~~~h~~--~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+.+++ .+..+.+|.. .|.+++|+|++++|++++.||.|++||+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 359 LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 98887 7889999977 99999999999999999999999999984
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=260.77 Aligned_cols=298 Identities=14% Similarity=0.202 Sum_probs=211.8
Q ss_pred cCCceeeEEEeCCCC-eEEEe----------cCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccC
Q 016769 17 HRASVTDVCFHQTKP-ILFAG----------TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 17 H~~~V~~v~f~~~~~-~L~sg----------s~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
|...|++++|+|+++ +|++| +.|+.|+|||+.++.....+........+.+++|++ ++..|++++.|
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d 88 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH--NNKIIAGALDN 88 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECS--SSSCEEEEESS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECC--CCCeEEEEccC
Confidence 457899999999987 99999 899999999998765321111111234688999988 46889999999
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
++|++||+.+..........+.. .. ..+ ....+
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~-------------h~---------~~v-------------------------~~~~~ 121 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSN-------------HS---------SSV-------------------------KTVKF 121 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCC-------------SS---------SCC-------------------------CEEEE
T ss_pred CeEEEeecccccccccchhhccC-------------Cc---------cce-------------------------EEEEE
Confidence 99999999763211000000000 00 000 00112
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCC------eeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCC
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAE------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 239 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~d 239 (383)
.+++..++ ++++.++.|++||+++.+ ....+.. ...+.....++. +.+.. ...+++++.|
T Consensus 122 ~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~---~~~~~---~~~l~~~~~d 187 (416)
T 2pm9_A 122 NAKQDNVL-ASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ-------SMSSVDEVISLA---WNQSL---AHVFASAGSS 187 (416)
T ss_dssp CSSSTTBE-EEECSSSCEEBCBTTTTSSCTTTCCCBCCCC-------SCCSSCCCCEEE---ECSSC---TTEEEEESSS
T ss_pred cCCCCCEE-EEEcCCCeEEEEECCCCcccccccccccccc-------ccCCCCCeeEEE---eCCCC---CcEEEEEcCC
Confidence 33323344 456678999999998876 2222210 001122233322 44431 2358899999
Q ss_pred CcEEEEeCCCCCCceeeeecc------ccCeEEEEEeCCC-CceEEEEcCC---cEEEEEccCCCCeeEEeeeee-cCCC
Q 016769 240 GSILVWDIRNPGIPLTAMKVH------LEPVLCLSIDESC-NGGISGGADQ---KIVLYNLDHSTGSCVIKKEIN-LERP 308 (383)
Q Consensus 240 g~i~~wdl~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~~~s~~~d~---~i~~wdl~~~~~~~~~~~~~~-~~~~ 308 (383)
+.|++||+++. ..+..+..| ..++.++.|++++ ..+++++.|+ .|++||++...... ..+. .+..
T Consensus 188 g~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~---~~~~~~~~~ 263 (416)
T 2pm9_A 188 NFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL---QTLNQGHQK 263 (416)
T ss_dssp SCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS---BCCCSCCSS
T ss_pred CCEEEEECCCC-CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc---EEeecCccC
Confidence 99999999874 345556555 7889999999987 4678899998 99999998642211 1233 4667
Q ss_pred CeEEEEECC-CCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCC-CEEEEEeCCCcEEEEeCCCC
Q 016769 309 GISGTSIRP-DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDC-KLMASASEDSTVALWELYPP 381 (383)
Q Consensus 309 ~i~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~-~~las~s~d~~i~~w~~~~~ 381 (383)
.+.+++|+| ++++|++++.|++|++||+.+++.+..+.+|...|.+++|+|++ ++|++++.|+.|++||+...
T Consensus 264 ~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 264 GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 899999999 89999999999999999999999999999999999999999999 79999999999999999643
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=243.58 Aligned_cols=243 Identities=21% Similarity=0.330 Sum_probs=183.5
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..+.+++|+| ++..|++++.|++|++||++++.... .+..+ ..+ +
T Consensus 14 ~~V~~~~fsp--~~~~l~s~~~dg~v~lWd~~~~~~~~----~~~~~----------~~~------------v------- 58 (304)
T 2ynn_A 14 DRVKGIDFHP--TEPWVLTTLYSGRVELWNYETQVEVR----SIQVT----------ETP------------V------- 58 (304)
T ss_dssp SCEEEEEECS--SSSEEEEEETTSEEEEEETTTTEEEE----EEECC----------SSC------------E-------
T ss_pred CceEEEEECC--CCCEEEEEcCCCcEEEEECCCCceeE----Eeecc----------CCc------------E-------
Confidence 4688999999 46889999999999999998763210 10000 000 0
Q ss_pred ccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEee
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 222 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 222 (383)
....+.+++ ++ +++|+.|++|++||+++++.+..+..+ ...+.++ .+
T Consensus 59 ------------------~~~~~~~~~-~~-l~s~s~d~~i~vwd~~~~~~~~~~~~h----------~~~v~~~---~~ 105 (304)
T 2ynn_A 59 ------------------RAGKFIARK-NW-IIVGSDDFRIRVFNYNTGEKVVDFEAH----------PDYIRSI---AV 105 (304)
T ss_dssp ------------------EEEEEEGGG-TE-EEEEETTSEEEEEETTTCCEEEEEECC----------SSCEEEE---EE
T ss_pred ------------------EEEEEeCCC-CE-EEEECCCCEEEEEECCCCcEEEEEeCC----------CCcEEEE---EE
Confidence 000112233 23 445677899999999999887776532 1222232 24
Q ss_pred cCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeC-CCCceEEEEcCCcEEEEEccCCCCeeEEee
Q 016769 223 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKK 301 (383)
Q Consensus 223 ~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~ 301 (383)
.|.. ..+++|+.|++|++||+++.......+.+|..+|.+++|+| ++..+++|+.|+.|++||+........+
T Consensus 106 ~~~~----~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~-- 179 (304)
T 2ynn_A 106 HPTK----PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL-- 179 (304)
T ss_dssp CSSS----SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE--
T ss_pred cCCC----CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee--
Confidence 4442 36889999999999999875555667889999999999998 4567899999999999999755433222
Q ss_pred eeecCCCCeEEEEECC--CCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 302 EINLERPGISGTSIRP--DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 302 ~~~~~~~~i~~~~~~p--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
...+...+..+.|+| ++++|++|+.|++|++||+++++.+.++.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus 180 -~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 180 -TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp -ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred -ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 123345688888876 77899999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 016769 380 P 380 (383)
Q Consensus 380 ~ 380 (383)
.
T Consensus 259 ~ 259 (304)
T 2ynn_A 259 T 259 (304)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=253.49 Aligned_cols=291 Identities=13% Similarity=0.201 Sum_probs=209.3
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccc--cccccccccccceeeeeeecCCCCcceeEecccCCeEEE
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~ 90 (383)
.+..|.++|++++|+|++++|++|+.|+.|++||..+++ .+..+..|. ..+.++++.+ +++.|++++.|++|++
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~~~~~dg~i~v 78 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN--GQVTGVDWAP--DSNRIVTCGTDRNAYV 78 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS--SCEEEEEEET--TTTEEEEEETTSCEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCC--CcccEEEEeC--CCCEEEEEcCCCeEEE
Confidence 566799999999999999999999999999999998765 555444443 4678889988 4688999999999999
Q ss_pred eecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCC
Q 016769 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGP 170 (383)
Q Consensus 91 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (383)
||+++++... .. .+.. . ... .....+.+++
T Consensus 79 wd~~~~~~~~----~~----------~~~~-~---------~~~-------------------------v~~~~~~~~~- 108 (372)
T 1k8k_C 79 WTLKGRTWKP----TL----------VILR-I---------NRA-------------------------ARCVRWAPNE- 108 (372)
T ss_dssp EEEETTEEEE----EE----------ECCC-C---------SSC-------------------------EEEEEECTTS-
T ss_pred EECCCCeeee----eE----------Eeec-C---------CCc-------------------------eeEEEECCCC-
Confidence 9997653100 00 0000 0 000 0001123343
Q ss_pred ceeeeccCCcceEEEEecCCCCe---eeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
++++ +++.++.|++||++.... ...+.. .+.....++ .+.|+. ..+++++.|+.|++||+
T Consensus 109 ~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~---------~~~~~i~~~---~~~~~~----~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 109 KKFA-VGSGSRVISICYFEQENDWWVCKHIKK---------PIRSTVLSL---DWHPNS----VLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp SEEE-EEETTSSEEEEEEETTTTEEEEEEECT---------TCCSCEEEE---EECTTS----SEEEEEETTSCEEEEEC
T ss_pred CEEE-EEeCCCEEEEEEecCCCcceeeeeeec---------ccCCCeeEE---EEcCCC----CEEEEEcCCCCEEEEEc
Confidence 3344 455679999999988763 222211 111222222 244432 36889999999999997
Q ss_pred CC-----------------CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 248 RN-----------------PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 248 ~~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
+. ....+..+..|..++.++.|++++..+++++.|+.|++||++.... . ..+..+...+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~--~~~~~~~~~v 247 (372)
T 1k8k_C 172 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA--V--ATLASETLPL 247 (372)
T ss_dssp CCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE--E--EEEECSSCCE
T ss_pred ccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce--e--EEEccCCCCe
Confidence 41 2345667778999999999999999999999999999999975542 2 2334566689
Q ss_pred EEEEECCCCcEEEEEeCCCcEEEEEcCC--Cc--------------------------------eE------EEe-cccc
Q 016769 311 SGTSIRPDSKIAATAGWDRRVRIYNYRK--GS--------------------------------AL------AIL-KYHH 349 (383)
Q Consensus 311 ~~~~~~p~~~~l~s~~~dg~i~iwd~~~--~~--------------------------------~~------~~~-~~h~ 349 (383)
.+++|+|++++++++ .|+.|++||+.. ++ .. ..+ .+|.
T Consensus 248 ~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 326 (372)
T 1k8k_C 248 LAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHK 326 (372)
T ss_dssp EEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSS
T ss_pred EEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccccccc
Confidence 999999999988877 999999999987 42 00 223 4899
Q ss_pred cceeEEEEe-CCC---CEEEEEeCCCcEEEEeCC
Q 016769 350 ATCNAVSFS-SDC---KLMASASEDSTVALWELY 379 (383)
Q Consensus 350 ~~v~~v~~s-pd~---~~las~s~d~~i~~w~~~ 379 (383)
..|.+++|+ ++| ++|+||+.||.|++||+.
T Consensus 327 ~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 327 NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp SCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred CCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 999999966 677 999999999999999974
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=254.78 Aligned_cols=299 Identities=16% Similarity=0.233 Sum_probs=212.6
Q ss_pred eeeee--ecCCceeeEEEeCCCC-eEEEecCCCeEEEeeC----ccccc------cccccccc--------ccceeeeee
Q 016769 11 VAVLR--GHRASVTDVCFHQTKP-ILFAGTTGGELRIWDT----VQHRT------VSSSWVHS--------AAHGIVSVA 69 (383)
Q Consensus 11 ~~~l~--gH~~~V~~v~f~~~~~-~L~sgs~D~~v~vW~~----~~~~~------~~~~~~~~--------~~~~~~~~~ 69 (383)
..++. .|.+.|++++|+|+++ +|++|+.|+.|++|++ .+++. ...+.... ....+.+++
T Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 36 VKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp CEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred hhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE
Confidence 34444 5569999999999999 9999999999999999 76662 22221100 123688899
Q ss_pred ecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCcc
Q 016769 70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL 149 (383)
Q Consensus 70 ~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (383)
+++ ++..|++++.|++|++||. ++.. ...+..+. ..+
T Consensus 116 ~s~--~~~~l~~~~~dg~i~i~~~-~~~~----~~~~~~~~----------------------~~v-------------- 152 (425)
T 1r5m_A 116 WSH--DGNSIVTGVENGELRLWNK-TGAL----LNVLNFHR----------------------API-------------- 152 (425)
T ss_dssp ECT--TSSEEEEEETTSCEEEEET-TSCE----EEEECCCC----------------------SCE--------------
T ss_pred EcC--CCCEEEEEeCCCeEEEEeC-CCCe----eeeccCCC----------------------ccE--------------
Confidence 998 4688999999999999993 3321 00100000 000
Q ss_pred ccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCC----CCcCCCC-CceeeEEEeecC
Q 016769 150 CDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS----PNFSSKG-RGMCMAVQAYLP 224 (383)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s----~~~~~~~-~~~~~~~~~~~~ 224 (383)
....+.+++. +++ +++.++.|++||+++++.+..+........ ..+...+ ...++. +.+
T Consensus 153 -----------~~~~~~~~~~-~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 216 (425)
T 1r5m_A 153 -----------VSVKWNKDGT-HII-SMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE---WVD 216 (425)
T ss_dssp -----------EEEEECTTSS-EEE-EEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCE---EEE
T ss_pred -----------EEEEECCCCC-EEE-EEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEE---EcC
Confidence 0011223333 344 455689999999999887766653221100 0000000 012222 222
Q ss_pred CCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee
Q 016769 225 SKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN 304 (383)
Q Consensus 225 ~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~ 304 (383)
. ..+++++.|+.|++||+++. .++..+..|..+|.++.|++++..+++++.|+.|++||++...... ...
T Consensus 217 ~-----~~~~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~ 286 (425)
T 1r5m_A 217 D-----DKFVIPGPKGAIFVYQITEK-TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN----CFY 286 (425)
T ss_dssp T-----TEEEEECGGGCEEEEETTCS-SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE----EEC
T ss_pred C-----CEEEEEcCCCeEEEEEcCCC-ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce----Eec
Confidence 2 24788999999999999874 4566778899999999999999999999999999999987644322 233
Q ss_pred cCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 305 LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 305 ~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.+...+.+++|+|++ ++++++.|+.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 287 ~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 287 GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 456789999999999 99999999999999999999999999999999999999999999999999999999984
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=250.73 Aligned_cols=261 Identities=18% Similarity=0.210 Sum_probs=193.8
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCc--ccccccccccccccceeeeeeecCCCCcceeEecccCC
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (383)
+++.++.+|.+.|++++|+|++++|++|+.||.|+|||+. +.+.+..+..|. ..+.++++.+..++..|++++.|+
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETTS
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCC--CcEEEEEeCCCCCCCEEEEeccCC
Confidence 3567899999999999999999999999999999999987 444444444443 457888887643368899999999
Q ss_pred eEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 87 ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
+|++||++++... .+ ..+
T Consensus 80 ~v~iwd~~~~~~~-----~~---------~~~------------------------------------------------ 97 (379)
T 3jrp_A 80 KVLIWKEENGRWS-----QI---------AVH------------------------------------------------ 97 (379)
T ss_dssp CEEEEEEETTEEE-----EE---------EEE------------------------------------------------
T ss_pred EEEEEEcCCCcee-----Ee---------eee------------------------------------------------
Confidence 9999998765200 00 000
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
.+ ....| .++ .+.|.. ....+++++.|+.|++||
T Consensus 98 ---------~~-~~~~v-------------------------------~~~---~~~~~~--~~~~l~~~~~d~~i~v~d 131 (379)
T 3jrp_A 98 ---------AV-HSASV-------------------------------NSV---QWAPHE--YGPLLLVASSDGKVSVVE 131 (379)
T ss_dssp ---------CC-CSSCE-------------------------------EEE---EECCGG--GCSEEEEEETTSEEEEEE
T ss_pred ---------cC-CCcce-------------------------------EEE---EeCCCC--CCCEEEEecCCCcEEEEe
Confidence 00 00000 000 111110 011477889999999999
Q ss_pred CCCCCC-ceeeeeccccCeEEEEEeC-------------CCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEE
Q 016769 247 IRNPGI-PLTAMKVHLEPVLCLSIDE-------------SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 312 (383)
Q Consensus 247 l~~~~~-~~~~~~~h~~~v~~~~~~~-------------~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~ 312 (383)
+++... ....+..|..+|.++.|++ ++..+++++.|+.|++||+............+..+...+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~ 211 (379)
T 3jrp_A 132 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 211 (379)
T ss_dssp CCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred cCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeE
Confidence 887532 3345677889999999998 57889999999999999998665544444455667788999
Q ss_pred EEECCC---CcEEEEEeCCCcEEEEEcCCCc---eEE--EecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 313 TSIRPD---SKIAATAGWDRRVRIYNYRKGS---ALA--ILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 313 ~~~~p~---~~~l~s~~~dg~i~iwd~~~~~---~~~--~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
++|+|+ +++|++++.||+|++||+.++. ... ....|...|.+++|+|++++|++++.||.|++|++.
T Consensus 212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred EEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 999999 8999999999999999998864 222 223488899999999999999999999999999985
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=258.56 Aligned_cols=295 Identities=12% Similarity=0.133 Sum_probs=196.3
Q ss_pred eeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccc--ccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
.+++.|.++|++++|+|++++|++|+.|+.|+|||+.++ +++..+..|. ..+.+++++++ ++.|++++.|++|+
T Consensus 5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~s~~--~~~l~s~s~d~~v~ 80 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHD--KIVTCVDWAPK--SNRIVTCSQDRNAY 80 (377)
T ss_dssp EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCS--SCEEEEEECTT--TCCEEEEETTSSEE
T ss_pred eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCC--ceEEEEEEeCC--CCEEEEEeCCCeEE
Confidence 456778899999999999999999999999999999876 5555554443 46888999984 68899999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+||++++.... +...+..+ ... .....+.+++
T Consensus 81 vwd~~~~~~~~-~~~~~~~~----------------------~~~-------------------------v~~~~~~~~~ 112 (377)
T 3dwl_C 81 VYEKRPDGTWK-QTLVLLRL----------------------NRA-------------------------ATFVRWSPNE 112 (377)
T ss_dssp EC------CCC-CEEECCCC----------------------SSC-------------------------EEEEECCTTS
T ss_pred EEEcCCCCcee-eeeEeccc----------------------CCc-------------------------eEEEEECCCC
Confidence 99998763100 00000000 000 0001123333
Q ss_pred CceeeeccCCcceEEEEecCCCCe---eeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
. + +++++.++.|++||+++++. ...+... +...+.++ .+.|+. ..+++++.|++|++||
T Consensus 113 ~-~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------h~~~v~~~---~~~~~~----~~l~~~~~d~~i~iwd 174 (377)
T 3dwl_C 113 D-K-FAVGSGARVISVCYFEQENDWWVSKHLKRP---------LRSTILSL---DWHPNN----VLLAAGCADRKAYVLS 174 (377)
T ss_dssp S-C-CEEEESSSCEEECCC-----CCCCEEECSS---------CCSCEEEE---EECTTS----SEEEEEESSSCEEEEE
T ss_pred C-E-EEEEecCCeEEEEEECCcccceeeeEeecc---------cCCCeEEE---EEcCCC----CEEEEEeCCCEEEEEE
Confidence 3 3 34556689999999988763 3334320 11222232 244432 3688999999999999
Q ss_pred CCCC-----------------CCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCC
Q 016769 247 IRNP-----------------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 309 (383)
Q Consensus 247 l~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~ 309 (383)
++.. ..++..+ .|..+|.++.|++++..+++++.|+.|++||+............+..+...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 253 (377)
T 3dwl_C 175 AYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLP 253 (377)
T ss_dssp ECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSC
T ss_pred EEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCc
Confidence 8531 1223344 788999999999999999999999999999998765432223345566778
Q ss_pred eEEEEECCCCcEEEEEeCCCcEEEEEcCCCc---------------------------------------eEE-------
Q 016769 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGS---------------------------------------ALA------- 343 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~---------------------------------------~~~------- 343 (383)
+.+++|+|++++|++++.|+.+ +|+..... ...
T Consensus 254 v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 332 (377)
T 3dwl_C 254 LRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGS 332 (377)
T ss_dssp EEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------------------
T ss_pred eEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccc
Confidence 9999999999999988766655 67664211 000
Q ss_pred ------EecccccceeEEEEeCCC-C---EEEEEeCCCcEEEEeC
Q 016769 344 ------ILKYHHATCNAVSFSSDC-K---LMASASEDSTVALWEL 378 (383)
Q Consensus 344 ------~~~~h~~~v~~v~~spd~-~---~las~s~d~~i~~w~~ 378 (383)
....|.+.|.++++.++. . .|+|||.||.|++||+
T Consensus 333 ~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 333 SQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ----CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 011399999999976544 3 6999999999999996
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=249.99 Aligned_cols=320 Identities=13% Similarity=0.126 Sum_probs=193.4
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccc----ccccccccccceeeeeeecCCCCcceeEeccc
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT----VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (383)
.....+.||++.|++|+|+|++++|++|+.||.|++||+.++.. ...+..| ...+.++++.+..++..|++++.
T Consensus 2 ~~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~d~~~l~s~~~ 79 (351)
T 3f3f_A 2 HMQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH--DSSIVAIDWASPEYGRIIASASY 79 (351)
T ss_dssp CCCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC--SSCEEEEEECCGGGCSEEEEEET
T ss_pred CccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccC--CCcEEEEEEcCCCCCCEEEEEcC
Confidence 44567899999999999999999999999999999999876532 2222223 34688899987423578999999
Q ss_pred CCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 85 D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
|++|++||++++....... . .......... ...+ ....
T Consensus 80 dg~v~vwd~~~~~~~~~~~------~--~~~~~~~~~~---------~~~v-------------------------~~~~ 117 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEECSGR------R--WNKLCTLNDS---------KGSL-------------------------YSVK 117 (351)
T ss_dssp TSCEEEEEECTTSCTTSSC------S--EEEEEEECCC---------SSCE-------------------------EEEE
T ss_pred CCeEEEEecCCCccccccc------C--cceeeeeccc---------CCce-------------------------eEEE
Confidence 9999999998764211000 0 0000000000 0000 0011
Q ss_pred cCCCC-CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCc---CCCCCceeeEEEeecCCCCCCceEEEEEeCCC
Q 016769 165 VPAEG-PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF---SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 240 (383)
Q Consensus 165 ~~~~~-~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg 240 (383)
+.++. ..+ +++++.++.|++||+++++.+..+........... .......++ .+.|.... ...+++++.|+
T Consensus 118 ~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~-~~~l~~~~~~~ 192 (351)
T 3f3f_A 118 FAPAHLGLK-LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCL---SWCPSRFS-PEKLAVSALEQ 192 (351)
T ss_dssp ECCGGGCSE-EEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEE---EECCCSSS-CCEEEEEETTE
T ss_pred EcCCCCCcE-EEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEE---EeccCCCC-CcEEEEecCCC
Confidence 22321 233 34556789999999988775433321100000011 111222232 34443211 23688899999
Q ss_pred cEEEEeCCCCCC-ceeeeeccccCeEEEEEeCCC----CceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEE
Q 016769 241 SILVWDIRNPGI-PLTAMKVHLEPVLCLSIDESC----NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 315 (383)
Q Consensus 241 ~i~~wdl~~~~~-~~~~~~~h~~~v~~~~~~~~~----~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (383)
.+.+|+...... .+..+..|..+|.++.|++++ ..+++++.|+.|++||+........... ..........
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~ 268 (351)
T 3f3f_A 193 AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE----SLTNSNMFDN 268 (351)
T ss_dssp EEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------
T ss_pred cEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC----cccceeccCC
Confidence 998888765432 256677899999999999997 6799999999999999975432211111 1111222222
Q ss_pred CCCCcEE----EEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 316 RPDSKIA----ATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 316 ~p~~~~l----~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
.+....+ ..+.....+.+|+....+.+..+.+|...|.+++|+|++++|++|+.|+.|++||+..+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 269 SADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp ----------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred CcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 3333332 33344556667777777788889999999999999999999999999999999999754
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=252.78 Aligned_cols=303 Identities=17% Similarity=0.246 Sum_probs=210.2
Q ss_pred CCCCeeeeeecCCce-eeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccC
Q 016769 7 PPDPVAVLRGHRASV-TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 7 ~~~~~~~l~gH~~~V-~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
...+..+|.+|.+.| .+++| ++++|+||+.||+|++||+.+++.+..+..|. ..+.++.+.+. ..+++++.|
T Consensus 110 ~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~--~~V~~l~~~~~---~~l~s~s~d 182 (464)
T 3v7d_B 110 FVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD--GGVWALKYAHG---GILVSGSTD 182 (464)
T ss_dssp CCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECST---TEEEEEETT
T ss_pred cCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCC--cCEEEEEEcCC---CEEEEEeCC
Confidence 334567899999886 55555 56799999999999999998888776665554 46888888873 489999999
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
++|++||+++++.. ..+..+... +. . ..+
T Consensus 183 g~i~vwd~~~~~~~----~~~~~h~~~----------------------v~------------------------~-l~~ 211 (464)
T 3v7d_B 183 RTVRVWDIKKGCCT----HVFEGHNST----------------------VR------------------------C-LDI 211 (464)
T ss_dssp SCEEEEETTTTEEE----EEECCCSSC----------------------EE------------------------E-EEE
T ss_pred CCEEEEECCCCcEE----EEECCCCCc----------------------cE------------------------E-EEE
Confidence 99999999876321 011000000 00 0 001
Q ss_pred CC-CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCC--------ceeeEEEeecCCCCCCceEEEEE
Q 016769 166 PA-EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR--------GMCMAVQAYLPSKSQGFVNVLAG 236 (383)
Q Consensus 166 ~~-~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~sg 236 (383)
.+ .... ++++++.|++|++||+++...................+... +....+..+.+. ...+++|
T Consensus 212 ~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~ 286 (464)
T 3v7d_B 212 VEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH----GNIVVSG 286 (464)
T ss_dssp EESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE----TTEEEEE
T ss_pred ecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC----CCEEEEE
Confidence 11 1112 34556778999999998876433221110000000000000 000011111121 1258899
Q ss_pred eCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEEC
Q 016769 237 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 316 (383)
Q Consensus 237 ~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (383)
+.|+.|++||+++ ..++..+..|..+|.++.+++++..+++++.|+.|++||++... .. ..+..+...+.+++++
T Consensus 287 ~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~--~~~~~h~~~v~~~~~~ 361 (464)
T 3v7d_B 287 SYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE--LM--YTLQGHTALVGLLRLS 361 (464)
T ss_dssp ETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE--EE--EEECCCSSCEEEEEEC
T ss_pred eCCCeEEEEECCC-CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EE--EEEeCCCCcEEEEEEc
Confidence 9999999999987 44577788899999999999999999999999999999997543 22 2345567789999997
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 317 PDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 317 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
++++++++.||+|++||+.+++..... .|...+..++|+|++++|++|+ |+.|++||+...
T Consensus 362 --~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 362 --DKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp --SSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred --CCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 579999999999999999988876555 3677788899999999999999 899999998643
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-32 Score=286.68 Aligned_cols=350 Identities=15% Similarity=0.198 Sum_probs=235.1
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
...++.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|. ..+.+++|++ ++.++++++.|++|+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~--~~v~~~~~s~--~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE--DEVLCCAFSS--DDSYIATCSADKKVK 682 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSEEE
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCC--CCEEEEEEec--CCCEEEEEeCCCeEE
Confidence 345788999999999999999999999999999999999888777665554 4688999998 468999999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeec--cccccccc-cCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVK--EPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
+||+.++... ..+..+........... .....+.. ..+....|+...+.... . ...+. .......+.
T Consensus 683 vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~-~~~h~----~~v~~~~~s 752 (1249)
T 3sfz_A 683 IWDSATGKLV----HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN-T-MFGHT----NSVNHCRFS 752 (1249)
T ss_dssp EEETTTCCEE----EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE-E-ECCCS----SCEEEEEEC
T ss_pred EEECCCCceE----EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh-e-ecCCC----CCEEEEEEe
Confidence 9999887532 12222211111111111 00000000 01111112211111000 0 00000 011112344
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCeeeEeccCc--------------CCCCCCcCCCCCceeeE--------------
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS--------------CGGSPNFSSKGRGMCMA-------------- 218 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~--------------~~~s~~~~~~~~~~~~~-------------- 218 (383)
+++. + +++++.|+.|++||++++.....+.... .+.+..+++.+..+..+
T Consensus 753 p~~~-~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~ 830 (1249)
T 3sfz_A 753 PDDE-L-LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 830 (1249)
T ss_dssp SSTT-E-EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred cCCC-E-EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence 5554 3 4456678999999999887655443211 11122233332221111
Q ss_pred --------------EEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCc
Q 016769 219 --------------VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQK 284 (383)
Q Consensus 219 --------------~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~ 284 (383)
...+.|. ...+++++.|+.|++||+.+ ......+.+|..+|.++.|++++..+++++.|+.
T Consensus 831 ~~~~~~~~~~~~v~~~~~sp~----~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~ 905 (1249)
T 3sfz_A 831 LLAEIHTGHHSTIQYCDFSPY----DHLAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905 (1249)
T ss_dssp EEEEEECSSSSCCCEEEECSS----TTEEEEECSSSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ceeEEcCCCCCceEEEEEcCC----CCEEEEEeCCCeEEEEEcCC-CceeeecCCCccceEEEEECCCCCEEEEEeCCCe
Confidence 0123332 23588899999999999987 4556778899999999999999999999999999
Q ss_pred EEEEEccCCCC-----------------------------eeEEee----eeecCCCCeEEEEECCCCcEEEEEeCCCcE
Q 016769 285 IVLYNLDHSTG-----------------------------SCVIKK----EINLERPGISGTSIRPDSKIAATAGWDRRV 331 (383)
Q Consensus 285 i~~wdl~~~~~-----------------------------~~~~~~----~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i 331 (383)
|++||+..... ...... ........+.+++|+|+++++++|+.||.|
T Consensus 906 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i 985 (1249)
T 3sfz_A 906 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAI 985 (1249)
T ss_dssp EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCC
T ss_pred EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCE
Confidence 99999752100 000000 001123468999999999999999999999
Q ss_pred EEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 332 RIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 332 ~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
++||+.+++....+.+|...|.+++|+||+++|++++.|+.|++||+..
T Consensus 986 ~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 986 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp EEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred EEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 9999999999999999999999999999999999999999999999864
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-31 Score=247.59 Aligned_cols=294 Identities=16% Similarity=0.219 Sum_probs=210.3
Q ss_pred CCCCeeeee--ecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEeccc
Q 016769 7 PPDPVAVLR--GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (383)
Q Consensus 7 ~~~~~~~l~--gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (383)
|..|..++. +|...++..++++++..|++++.|+.|++||..+++........ ....+.++++++ ++..|++++.
T Consensus 78 ~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~-~~~~v~~v~~s~--~~~~l~~~~~ 154 (401)
T 4aez_A 78 NTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETD-ESTYVASVKWSH--DGSFLSVGLG 154 (401)
T ss_dssp CCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECC-TTCCEEEEEECT--TSSEEEEEET
T ss_pred CCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecC-CCCCEEEEEECC--CCCEEEEECC
Confidence 444555554 89888777666666678999999999999999887765443321 234688899998 4688999999
Q ss_pred CCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 85 D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
|++|++||+++++.. ..+..+.. .+ ..
T Consensus 155 dg~i~iwd~~~~~~~----~~~~~~~~----------------------~v---------------------------~~ 181 (401)
T 4aez_A 155 NGLVDIYDVESQTKL----RTMAGHQA----------------------RV---------------------------GC 181 (401)
T ss_dssp TSCEEEEETTTCCEE----EEECCCSS----------------------CE---------------------------EE
T ss_pred CCeEEEEECcCCeEE----EEecCCCC----------------------ce---------------------------EE
Confidence 999999999876321 01100000 00 00
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCCC-eeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
+..++ . ++++++.++.|++||++... .+..+..+ .+.+.++ .+.|+. ..+++|+.|+.|+
T Consensus 182 ~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~v~~~---~~~~~~----~~l~s~~~d~~v~ 242 (401)
T 4aez_A 182 LSWNR-H-VLSSGSRSGAIHHHDVRIANHQIGTLQGH----------SSEVCGL---AWRSDG----LQLASGGNDNVVQ 242 (401)
T ss_dssp EEEET-T-EEEEEETTSEEEEEETTSSSCEEEEEECC----------SSCEEEE---EECTTS----SEEEEEETTSCEE
T ss_pred EEECC-C-EEEEEcCCCCEEEEecccCcceeeEEcCC----------CCCeeEE---EEcCCC----CEEEEEeCCCeEE
Confidence 00111 2 34556778999999998544 44444321 1222222 244432 3688999999999
Q ss_pred EEeCCCCCCceeeeeccccCeEEEEEeCCCCceE-EEE--cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCc
Q 016769 244 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGG--ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK 320 (383)
Q Consensus 244 ~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~--~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 320 (383)
+||+++ ..+...+..|..+|.++.|++++..++ +++ .|+.|++||+..... .. .+. ....+.+++|+|+++
T Consensus 243 iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~--~~--~~~-~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 243 IWDARS-SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR--VN--TVD-AGSQVTSLIWSPHSK 316 (401)
T ss_dssp EEETTC-SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE--EE--EEE-CSSCEEEEEECSSSS
T ss_pred EccCCC-CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE--EE--EEe-CCCcEEEEEECCCCC
Confidence 999987 445667788999999999999776654 443 699999999975432 21 122 346799999999999
Q ss_pred EEEEEe--CCCcEEEEEcCCCceEE--EecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 321 IAATAG--WDRRVRIYNYRKGSALA--ILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 321 ~l~s~~--~dg~i~iwd~~~~~~~~--~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
++++++ .||.|++||+.+++... .+.+|...|.+++|+||+++|++++.|+.|++||+...
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 999954 89999999999865544 46789999999999999999999999999999999654
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-32 Score=253.20 Aligned_cols=254 Identities=20% Similarity=0.339 Sum_probs=188.7
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
+...++.+|.+.|++|+|+|++++|+|||.|++|++||+.+.+++..+..|. ..+.++.+.| ++..|++++.|++|
T Consensus 141 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~--~~V~~v~~~p--~~~~l~s~s~D~~i 216 (410)
T 1vyh_C 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD--HNVSSVSIMP--NGDHIVSASRDKTI 216 (410)
T ss_dssp CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS--SCEEEEEECS--SSSEEEEEETTSEE
T ss_pred cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC--CCEEEEEEeC--CCCEEEEEeCCCeE
Confidence 4567899999999999999999999999999999999998877776665554 4688899998 46889999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++||++++.+.. .+..+.. .+ ....+.++
T Consensus 217 ~~wd~~~~~~~~----~~~~h~~----------------------~v-------------------------~~~~~~~~ 245 (410)
T 1vyh_C 217 KMWEVQTGYCVK----TFTGHRE----------------------WV-------------------------RMVRPNQD 245 (410)
T ss_dssp EEEETTTCCEEE----EEECCSS----------------------CE-------------------------EEEEECTT
T ss_pred EEEECCCCcEEE----EEeCCCc----------------------cE-------------------------EEEEECCC
Confidence 999998764211 1100000 00 00112233
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCC----------------CCceE
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS----------------QGFVN 232 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 232 (383)
+. ++++++.|++|++||++++++...+..+. ..+.++ .|.|... .....
T Consensus 246 g~--~l~s~s~D~~v~vwd~~~~~~~~~~~~h~----------~~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 310 (410)
T 1vyh_C 246 GT--LIASCSNDQTVRVWVVATKECKAELREHR----------HVVECI---SWAPESSYSSISEATGSETKKSGKPGPF 310 (410)
T ss_dssp SS--EEEEEETTSCEEEEETTTCCEEEEECCCS----------SCEEEE---EECCSCGGGGGGGCCSCC-------CCE
T ss_pred CC--EEEEEcCCCeEEEEECCCCceeeEecCCC----------ceEEEE---EEcCcccccchhhhccccccccCCCCCE
Confidence 32 34556778999999999988766664321 111121 1222210 01236
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 312 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~ 312 (383)
+++|+.|++|++||+++ +.++..+.+|...|.++.|++++..+++++.|+.|++||+...... ..+..+...|.+
T Consensus 311 l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~----~~~~~h~~~v~~ 385 (410)
T 1vyh_C 311 LLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM----KTLNAHEHFVTS 385 (410)
T ss_dssp EEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC----EEEECCSSCEEE
T ss_pred EEEEeCCCeEEEEECCC-CceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE----EEEcCCCCcEEE
Confidence 88999999999999987 4457788899999999999999999999999999999999754322 234556778999
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYR 337 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~ 337 (383)
++|+|++++|++|+.|++|++|+++
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999999863
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=251.52 Aligned_cols=325 Identities=19% Similarity=0.299 Sum_probs=217.8
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
++...|.||.+.|.. ++++++++|++|+.||+|++||..+++++..+..|. ..+.++.+.. +.+++++.|++|
T Consensus 109 ~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~----~~l~s~~~dg~i 181 (445)
T 2ovr_B 109 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--GGVWSSQMRD----NIIISGSTDRTL 181 (445)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCS--SCEEEEEEET----TEEEEEETTSCE
T ss_pred ceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCC--CCEEEEEecC----CEEEEEeCCCeE
Confidence 456789999997643 455578999999999999999999888776665554 4577777763 689999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++||+++++.. ..+..+............. .......+....++...+.... . ... ....+..+..+
T Consensus 182 ~vwd~~~~~~~----~~~~~h~~~v~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~-~-~~~------~~~~v~~~~~~ 248 (445)
T 2ovr_B 182 KVWNAETGECI----HTLYGHTSTVRCMHLHEKR-VVSGSRDATLRVWDIETGQCLH-V-LMG------HVAAVRCVQYD 248 (445)
T ss_dssp EEEETTTTEEE----EEECCCSSCEEEEEEETTE-EEEEETTSEEEEEESSSCCEEE-E-EEC------CSSCEEEEEEC
T ss_pred EEEECCcCcEE----EEECCCCCcEEEEEecCCE-EEEEeCCCEEEEEECCCCcEEE-E-EcC------CcccEEEEEEC
Confidence 99999887431 1222121111111111111 0000001111111111111000 0 000 00111112223
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
+. + +++++.++.|++||+++++.+..+..+ .....++. + + ...+++|+.|+.|++||++
T Consensus 249 ~~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~v~~~~---~--~----~~~l~~~~~d~~i~i~d~~ 307 (445)
T 2ovr_B 249 GR-R-VVSGAYDFMVKVWDPETETCLHTLQGH----------TNRVYSLQ---F--D----GIHVVSGSLDTSIRVWDVE 307 (445)
T ss_dssp SS-C-EEEEETTSCEEEEEGGGTEEEEEECCC----------SSCEEEEE---E--C----SSEEEEEETTSCEEEEETT
T ss_pred CC-E-EEEEcCCCEEEEEECCCCcEeEEecCC----------CCceEEEE---E--C----CCEEEEEeCCCeEEEEECC
Confidence 33 3 445667899999999998877766421 11222222 2 1 1258899999999999998
Q ss_pred CCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC
Q 016769 249 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 328 (383)
Q Consensus 249 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d 328 (383)
+. ..+..+..|...+.++.+++ ..+++++.|+.|++||++.......+. ....+...+.+++|+ ++++++|+.|
T Consensus 308 ~~-~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~~~d 381 (445)
T 2ovr_B 308 TG-NCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQ-GPNKHQSAVTCLQFN--KNFVITSSDD 381 (445)
T ss_dssp TC-CEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEEC-STTSCSSCEEEEEEC--SSEEEEEETT
T ss_pred CC-CEEEEEcCCcccEEEEEEeC--CEEEEEeCCCeEEEEECCCCcEEEEEc-cCCCCCCCEEEEEEC--CCEEEEEeCC
Confidence 74 45677888999999998864 578999999999999997543221111 111255679999995 5799999999
Q ss_pred CcEEEEEcCCCceEEEe-----cccccceeEEEEeCCCCEEEEEeCCCc----EEEEeCCC
Q 016769 329 RRVRIYNYRKGSALAIL-----KYHHATCNAVSFSSDCKLMASASEDST----VALWELYP 380 (383)
Q Consensus 329 g~i~iwd~~~~~~~~~~-----~~h~~~v~~v~~spd~~~las~s~d~~----i~~w~~~~ 380 (383)
|+|++||+.+++.+..+ .+|...|.+++|+|++.+||+|+.||+ |.+||+..
T Consensus 382 g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 382 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999999988877 578899999999999999999999998 99999974
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=265.66 Aligned_cols=296 Identities=10% Similarity=0.045 Sum_probs=192.2
Q ss_pred eeeeecCCceeeEEEeCC------CCeEEEecCCCeEEEeeCcccccc-----------cccccccccceeeeeeecCCC
Q 016769 12 AVLRGHRASVTDVCFHQT------KPILFAGTTGGELRIWDTVQHRTV-----------SSSWVHSAAHGIVSVATGPSI 74 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~------~~~L~sgs~D~~v~vW~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 74 (383)
.++.+|.+.|++|+|+|+ +.+|||||.||+|+|||+..+.+. ..+..| ...+.+++|.+
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h--~~~v~sv~~s~-- 276 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA--DSLITTFDFLS-- 276 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCT--TTCEEEEEESS--
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcC--CCCEEEEEecC--
Confidence 457889999999999997 579999999999999999765422 112222 24578888886
Q ss_pred CcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccc
Q 016769 75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKE 154 (383)
Q Consensus 75 ~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (383)
+..|++|+.|++|++||++++.. +...+..+...
T Consensus 277 -~~~lasgs~DgtV~lWD~~~~~~---~~~~~~~H~~~------------------------------------------ 310 (524)
T 2j04_B 277 -PTTVVCGFKNGFVAEFDLTDPEV---PSFYDQVHDSY------------------------------------------ 310 (524)
T ss_dssp -SSEEEEEETTSEEEEEETTBCSS---CSEEEECSSSC------------------------------------------
T ss_pred -CCeEEEEeCCCEEEEEECCCCCC---ceEEeeccccc------------------------------------------
Confidence 25799999999999999986532 11111100000
Q ss_pred cCCcccee-cccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEE
Q 016769 155 SNRSFEII-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 233 (383)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (383)
+..+ ..+++++.. ++++++.|++|+|||+++++++..+..+.. .....++ .|.|.. ..+
T Consensus 311 ----V~sv~~~~s~~g~~-~laS~S~D~tvklWD~~~~~~~~~~~~~~~--------~~~v~~v---~fsp~~----~~l 370 (524)
T 2j04_B 311 ----ILSVSTAYSDFEDT-VVSTVAVDGYFYIFNPKDIATTKTTVSRFR--------GSNLVPV---VYCPQI----YSY 370 (524)
T ss_dssp ----EEEEEEECCTTSCC-EEEEEETTSEEEEECGGGHHHHCEEEEECS--------CCSCCCE---EEETTT----TEE
T ss_pred ----EEEEEEEcCCCCCe-EEEEeccCCeEEEEECCCCCcccccccccc--------cCcccce---EeCCCc----CeE
Confidence 0000 012233322 456677899999999998776554432110 0111122 255532 247
Q ss_pred EEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeec-CCCCeEE
Q 016769 234 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-ERPGISG 312 (383)
Q Consensus 234 ~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~-~~~~i~~ 312 (383)
++++.|++|++||+++.. .+..+.+|..+|.+++|+|++..+++|+.|++|++||+....... ....... ....+..
T Consensus 371 ~s~~~d~tv~lwd~~~~~-~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~-~~~~~~~~~~~~v~~ 448 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAF-AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHG-IKNSSATQKSLRLWK 448 (524)
T ss_dssp EEECSSSEEEEEETTCTT-CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTC-C------CCCCEEEE
T ss_pred EEeCCCCcEEEEECcccc-cceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccc-cccCccceeeeEEEE
Confidence 889999999999999754 456678899999999999999999999999999999975321100 0000000 1124678
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcC-CCceEEEecccccceeEEEEeCCCC---EEEEEeCCCcEEEEeCCCCC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYR-KGSALAILKYHHATCNAVSFSSDCK---LMASASEDSTVALWELYPPH 382 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~v~~spd~~---~las~s~d~~i~~w~~~~~~ 382 (383)
++|+|+++.+. . +| .+++|+.. ++..+..+.+|...|.+|+|+|+++ ++|+|+.||+|+||++.-.|
T Consensus 449 v~~sp~g~~~~-~-~~-~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 449 WDYSIKDDKYR-I-DS-SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp CBCCSSSCEEE-E-CC-CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred eccCCCCCeEE-c-cC-CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 89999998553 2 22 33444442 4666778889999999999999965 99999999999999996443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=244.50 Aligned_cols=253 Identities=14% Similarity=0.193 Sum_probs=179.4
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccccccccc--ccccceeeeeeecCCCCcceeEecccCCeEEE
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV--HSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~ 90 (383)
....|...|++++|+|++ .|++|+.||+|+|||+.+++++..... +.+...+.+++|++ ++++|++++.|++|++
T Consensus 77 ~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp--dg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 77 AGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS--SGTQAVSGSKDICIKV 153 (344)
T ss_dssp EEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEE
T ss_pred eeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC--CCCEEEEEeCCCeEEE
Confidence 445678899999999995 788999999999999988776543321 12234688999998 4789999999999999
Q ss_pred eecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCC
Q 016769 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGP 170 (383)
Q Consensus 91 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (383)
||+++++... .+..+.. . .....+.+++.
T Consensus 154 wd~~~~~~~~----~~~~h~~----------------------~-------------------------V~~~~~~~~~~ 182 (344)
T 4gqb_B 154 WDLAQQVVLS----SYRAHAA----------------------Q-------------------------VTCVAASPHKD 182 (344)
T ss_dssp EETTTTEEEE----EECCCSS----------------------C-------------------------EEEEEECSSCT
T ss_pred EECCCCcEEE----EEcCcCC----------------------c-------------------------eEEEEecCCCC
Confidence 9998764211 1100000 0 00011233443
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCC
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 250 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~ 250 (383)
. ++++++.|++|++||+++++....+.... ......++ .+.|.+ ...+++|+.||+|++||+++.
T Consensus 183 ~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--------~~~~~~~~---~~~p~~---~~~l~sg~~dg~v~~wd~~~~ 247 (344)
T 4gqb_B 183 S-VFLSCSEDNRILLWDTRCPKPASQIGCSA--------PGYLPTSL---AWHPQQ---SEVFVFGDENGTVSLVDTKST 247 (344)
T ss_dssp T-EEEEEETTSCEEEEETTSSSCEEECC------------CCCEEEE---EECSSC---TTEEEEEETTSEEEEEESCC-
T ss_pred C-ceeeeccccccccccccccceeeeeecce--------eeccceee---eecCCC---CcceEEeccCCcEEEEECCCC
Confidence 3 44566778999999999998776664211 11111121 344432 235788999999999999974
Q ss_pred CCceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCc-EEEEEeCC
Q 016769 251 GIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK-IAATAGWD 328 (383)
Q Consensus 251 ~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~l~s~~~d 328 (383)
.++..+++|..+|.++.|++++. .+++|+.|++|++||++... . + ....|...|++++|+|+++ +|++++.|
T Consensus 248 -~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~--~-~--~~~~H~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 248 -SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE--L-F--RSQAHRDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp --CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE--E-E--EECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred -cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc--E-E--EEcCCCCCEEEEEEeCCCCeEEEEEcCC
Confidence 45778899999999999999874 67899999999999987532 2 1 2456778899999999986 67799999
Q ss_pred CcEEEEEcCCCc
Q 016769 329 RRVRIYNYRKGS 340 (383)
Q Consensus 329 g~i~iwd~~~~~ 340 (383)
++|++|++.+..
T Consensus 322 ~~v~~w~v~~~~ 333 (344)
T 4gqb_B 322 HQVVHHVVPTEP 333 (344)
T ss_dssp SCEEEEECCC--
T ss_pred CeEEEEECCCCC
Confidence 999999997643
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=246.86 Aligned_cols=287 Identities=10% Similarity=0.082 Sum_probs=205.1
Q ss_pred eeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccc---ccccccccccceeeeeeecCCCCcc-eeEecccCCe
Q 016769 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGT 87 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~D~t 87 (383)
....+|.+.|++++|+|++++|++|+.|+.|++|++.+++. +.....| ...+.++++.+ ++. .|++++.|++
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~--~~~v~~~~~~~--~~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY--KHPLLCCNFID--NTDLQIYVGTVQGE 80 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC--SSCEEEEEEEE--SSSEEEEEEETTSC
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeec--CCceEEEEECC--CCCcEEEEEcCCCe
Confidence 34569999999999999999999999999999999876651 2222223 34678888887 367 8999999999
Q ss_pred EEEeec-CCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 88 VKCWDI-ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 88 i~~Wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
|++||+ +++.. ..+... .| ...+ . ...+.
T Consensus 81 i~~wd~~~~~~~-----~~~~~~-~~-------------------~~~v------------------------~-~l~~~ 110 (342)
T 1yfq_A 81 ILKVDLIGSPSF-----QALTNN-EA-------------------NLGI------------------------C-RICKY 110 (342)
T ss_dssp EEEECSSSSSSE-----EECBSC-CC-------------------CSCE------------------------E-EEEEE
T ss_pred EEEEEeccCCce-----Eecccc-CC-------------------CCce------------------------E-EEEeC
Confidence 999999 76531 000000 00 0000 0 00112
Q ss_pred CCCCceeeeccCCcceEEEEecCC---------CCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEe
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNT---------AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 237 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~---------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~ 237 (383)
+ + .++ ++++.++.|++||+++ .+.+..+. ......++. +.+. .+++++
T Consensus 111 ~-~-~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~---~~~~------~l~~~~ 167 (342)
T 1yfq_A 111 G-D-DKL-IAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-----------VKNKIFTMD---TNSS------RLIVGM 167 (342)
T ss_dssp T-T-TEE-EEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-----------SCCCEEEEE---ECSS------EEEEEE
T ss_pred C-C-CEE-EEEcCCCeEEEEcccccccccccccCCeeeEEe-----------eCCceEEEE---ecCC------cEEEEe
Confidence 2 2 233 4456789999999976 44332221 122233322 3332 288899
Q ss_pred CCCcEEEEeCCC-CCCc-eeeeeccccCeEEEEEeC-CCCceEEEEcCCcEEEEEccCC------CCeeEEeeeee----
Q 016769 238 EDGSILVWDIRN-PGIP-LTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHS------TGSCVIKKEIN---- 304 (383)
Q Consensus 238 ~dg~i~~wdl~~-~~~~-~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~i~~wdl~~~------~~~~~~~~~~~---- 304 (383)
.|+.|++||+++ .... ......|..++.++.+++ ++..+++++.|+.|++|+++.. .....+.....
T Consensus 168 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
T 1yfq_A 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247 (342)
T ss_dssp STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC
T ss_pred CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccc
Confidence 999999999987 4432 233446778999999999 9999999999999999999865 22222211100
Q ss_pred -cCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEeccc-ccceeEEEEeCCCCEEEEEeCCCc-EEEEe
Q 016769 305 -LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH-HATCNAVSFSSDCKLMASASEDST-VALWE 377 (383)
Q Consensus 305 -~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~v~~spd~~~las~s~d~~-i~~w~ 377 (383)
.+...+.+++|+|++++|++++.||+|++||+.+++.+..+.+| ...|.+++ |++++|++|+.|++ .+.|.
T Consensus 248 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 01238999999999999999999999999999999999999998 99999999 99999999999999 44433
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-31 Score=248.44 Aligned_cols=296 Identities=14% Similarity=0.184 Sum_probs=208.4
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEee
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd 92 (383)
.+.+| ..+...+|+|++++|++|+.|+.|++||+.+++....+..|. ..+.++++++ ++..|++++.|++|++||
T Consensus 93 ~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~s~d~~i~iwd 167 (420)
T 3vl1_A 93 MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHV--SEITKLKFFP--SGEALISSSQDMQLKIWS 167 (420)
T ss_dssp TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSS--SCEEEEEECT--TSSEEEEEETTSEEEEEE
T ss_pred EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccccc--CccEEEEECC--CCCEEEEEeCCCeEEEEe
Confidence 34455 445555789999999999999999999998776655443443 4688999998 467899999999999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
+++++... .+..+... + ....+.+++. +
T Consensus 168 ~~~~~~~~----~~~~h~~~----------------------v-------------------------~~~~~~~~~~-~ 195 (420)
T 3vl1_A 168 VKDGSNPR----TLIGHRAT----------------------V-------------------------TDIAIIDRGR-N 195 (420)
T ss_dssp TTTCCCCE----EEECCSSC----------------------E-------------------------EEEEEETTTT-E
T ss_pred CCCCcCce----EEcCCCCc----------------------E-------------------------EEEEEcCCCC-E
Confidence 98764211 11100000 0 0011223333 3
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEE------------------eecCCCCCCceEEE
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ------------------AYLPSKSQGFVNVL 234 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~ 234 (383)
+ ++++.|++|++||+++++.+..+..... +.....++.+. .|.| ....++
T Consensus 196 l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~ 263 (420)
T 3vl1_A 196 V-LSASLDGTIRLWECGTGTTIHTFNRKEN-------PHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT----YGKYVI 263 (420)
T ss_dssp E-EEEETTSCEEEEETTTTEEEEEECBTTB-------TTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC----TTEEEE
T ss_pred E-EEEcCCCcEEEeECCCCceeEEeecCCC-------CCCCccEEEEecCCcceeeecccCcccceEEcC----CCCEEE
Confidence 3 4566789999999999987777653210 00111111110 1222 234688
Q ss_pred EEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeeeec-CCCCeEE
Q 016769 235 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINL-ERPGISG 312 (383)
Q Consensus 235 sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~-~~~~i~~ 312 (383)
+|+.||.|++||+++..........|..+|.++.|++++. .+++++.|+.|++||++...... ..+.. +...+.+
T Consensus 264 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~---~~~~~~~~~~v~~ 340 (420)
T 3vl1_A 264 AGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV---GEFLINEGTPINN 340 (420)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS---EEEEESTTSCEEE
T ss_pred EEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch---hhhhccCCCCceE
Confidence 9999999999999986554444556888999999999988 88999999999999998654311 11222 4456777
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCC---------ceEEEecccccceeEEEEeCCCC---EEEEEeCCCcEEEEeCCC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYRKG---------SALAILKYHHATCNAVSFSSDCK---LMASASEDSTVALWELYP 380 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~v~~spd~~---~las~s~d~~i~~w~~~~ 380 (383)
+.+ |++++|++++.|++|++||+..+ .....+.+|...|.+++|+||++ .|++++.+|.+.+|++.+
T Consensus 341 ~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 341 VYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 755 57889999999999999999763 22234567889999999999999 788888899999999986
Q ss_pred C
Q 016769 381 P 381 (383)
Q Consensus 381 ~ 381 (383)
|
T Consensus 420 ~ 420 (420)
T 3vl1_A 420 P 420 (420)
T ss_dssp -
T ss_pred C
Confidence 6
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-31 Score=249.24 Aligned_cols=282 Identities=16% Similarity=0.316 Sum_probs=204.2
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
.......+|...|++++| ++++|++|+.||.|++||..+++....+..|. ..+.++.+. ++.+++|+.|++|
T Consensus 124 ~~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~~----~~~l~sg~~dg~i 195 (435)
T 1p22_A 124 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT--GSVLCLQYD----ERVIITGSSDSTV 195 (435)
T ss_dssp CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCS--SCEEEEECC----SSEEEEEETTSCE
T ss_pred eEEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCC--CcEEEEEEC----CCEEEEEcCCCeE
Confidence 334445577888998877 88999999999999999998887776655554 356777762 5789999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++||+++++.. ..+..+ . .. +..+...
T Consensus 196 ~vwd~~~~~~~----~~~~~h-------------~---------~~---------------------------v~~l~~~ 222 (435)
T 1p22_A 196 RVWDVNTGEML----NTLIHH-------------C---------EA---------------------------VLHLRFN 222 (435)
T ss_dssp EEEESSSCCEE----EEECCC-------------C---------SC---------------------------EEEEECC
T ss_pred EEEECCCCcEE----EEEcCC-------------C---------Cc---------------------------EEEEEEc
Confidence 99999876421 010000 0 00 0000011
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
+ . .+++++.|+.|++||++++......... ..+...+.++. + + ...+++|+.||.|++||++
T Consensus 223 ~-~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~v~~~~---~--~----~~~l~s~~~dg~i~vwd~~ 284 (435)
T 1p22_A 223 N-G-MMVTCSKDRSIAVWDMASPTDITLRRVL-------VGHRAAVNVVD---F--D----DKYIVSASGDRTIKVWNTS 284 (435)
T ss_dssp T-T-EEEEEETTSCEEEEECSSSSCCEEEEEE-------CCCSSCEEEEE---E--E----TTEEEEEETTSEEEEEETT
T ss_pred C-C-EEEEeeCCCcEEEEeCCCCCCceeeeEe-------cCCCCcEEEEE---e--C----CCEEEEEeCCCeEEEEECC
Confidence 1 2 3455667899999999887754211100 01112222222 2 1 1268899999999999998
Q ss_pred CCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC
Q 016769 249 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 328 (383)
Q Consensus 249 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d 328 (383)
+. ..+..+..|..+|.++.+++ ..+++|+.|+.|++||++... .. ..+..+...+.+++| ++++|++|+.|
T Consensus 285 ~~-~~~~~~~~~~~~v~~~~~~~--~~l~~g~~dg~i~iwd~~~~~--~~--~~~~~h~~~v~~~~~--~~~~l~sg~~d 355 (435)
T 1p22_A 285 TC-EFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGA--CL--RVLEGHEELVRCIRF--DNKRIVSGAYD 355 (435)
T ss_dssp TC-CEEEEEECCSSCEEEEEEET--TEEEEEETTSCEEEEETTTCC--EE--EEECCCSSCEEEEEC--CSSEEEEEETT
T ss_pred cC-cEEEEEcCCCCcEEEEEeCC--CEEEEEeCCCeEEEEECCCCC--EE--EEEeCCcCcEEEEEe--cCCEEEEEeCC
Confidence 74 45778889999999999964 678999999999999997543 22 234456678999998 78899999999
Q ss_pred CcEEEEEcCCCc---------eEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 329 RRVRIYNYRKGS---------ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 329 g~i~iwd~~~~~---------~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
|+|++||+.+++ .+..+.+|...|.+++| ++++|++|+.||.|++||+..
T Consensus 356 g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 356 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred CcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 999999997665 78889999999999999 788999999999999999853
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=274.89 Aligned_cols=353 Identities=11% Similarity=0.101 Sum_probs=210.1
Q ss_pred eecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecC
Q 016769 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (383)
Q Consensus 15 ~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~ 94 (383)
.+|...|++|+|+| +++|+|++.|++|+|||+.+++++..+. | ...+.+++++| +++++++|+.|++|++||++
T Consensus 55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~--~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~ 128 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-V--PGKITSIDTDA--SLDWMLIGLQNGSMIVYDID 128 (902)
T ss_dssp CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-C--SSCEEEEECCT--TCSEEEEEETTSCEEEEETT
T ss_pred cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-C--CCCEEEEEECC--CCCEEEEEcCCCcEEEEECC
Confidence 46889999999999 8899999999999999998877765543 2 24588899998 46899999999999999998
Q ss_pred CCCCCCCCeeee----------ecCceeeeeEEeecc--ccccccccCCCCccceeccCcccccCcccc-----c-----
Q 016769 95 NGGLSSNPSLTI----------KTNSYHFCKLSLVKE--PYANAKQANEPKDCYEREVGETVDTDSLCD-----S----- 152 (383)
Q Consensus 95 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----- 152 (383)
++... ...+ ..+............ .........+.. .|+...+.... ....+ .
T Consensus 129 ~~~~~---~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~-~~~~~~~~g~~~~~~~ 203 (902)
T 2oaj_A 129 RDQLS---SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQ-SFIYELPPFAPGGDFS 203 (902)
T ss_dssp TTEEE---EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEE-EECCCBCTTCCCSTTC
T ss_pred CCccc---cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEE-EEecccCCcCCCcccc
Confidence 76421 0000 000000001111100 000000111111 22222111000 00000 0
Q ss_pred --cccC-CccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeE--ecc---Cc--------------CCCCCCc--
Q 016769 153 --KESN-RSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR--LHQ---NS--------------CGGSPNF-- 208 (383)
Q Consensus 153 --~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~--~~~---~~--------------~~~s~~~-- 208 (383)
.... ........+++++. ++++++.|++|++||+++++++.. +.. +. .+.++.+
T Consensus 204 ~~~~~~h~~~V~~v~fspdg~--~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~ 281 (902)
T 2oaj_A 204 EKTNEKRTPKVIQSLYHPNSL--HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC 281 (902)
T ss_dssp CCTTSCBCCCEEEEEECTTSS--EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred cccccccCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence 0000 01112233456654 345567789999999998876542 210 00 0000011
Q ss_pred --CCCC-CceeeE------------E---------------------------Ee-------------ecCC------CC
Q 016769 209 --SSKG-RGMCMA------------V---------------------------QA-------------YLPS------KS 227 (383)
Q Consensus 209 --~~~~-~~~~~~------------~---------------------------~~-------------~~~~------~~ 227 (383)
.+.+ ..+..+ + .. +.+. ..
T Consensus 282 ~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~ 361 (902)
T 2oaj_A 282 ENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGC 361 (902)
T ss_dssp CSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHT
T ss_pred cCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCC
Confidence 0000 000000 0 00 0000 00
Q ss_pred CCceEEEEEeCCCcEEEEeCCCCCCcee------ee----------------------------------eccccCeEEE
Q 016769 228 QGFVNVLAGYEDGSILVWDIRNPGIPLT------AM----------------------------------KVHLEPVLCL 267 (383)
Q Consensus 228 ~~~~~~~sg~~dg~i~~wdl~~~~~~~~------~~----------------------------------~~h~~~v~~~ 267 (383)
.+...+++++.|++|++||+.++..... .+ ++|...+..+
T Consensus 362 ~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv 441 (902)
T 2oaj_A 362 HNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQK 441 (902)
T ss_dssp BSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCC
T ss_pred CCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcc
Confidence 1122567788899999999865321111 12 2233333444
Q ss_pred EEeCCCCceEEEEcCCcEEEEEccCCCCe--eEEeeeee-----cCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCc
Q 016769 268 SIDESCNGGISGGADQKIVLYNLDHSTGS--CVIKKEIN-----LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 340 (383)
Q Consensus 268 ~~~~~~~~~~s~~~d~~i~~wdl~~~~~~--~~~~~~~~-----~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~ 340 (383)
+|++++..+++|+.|++|++||+...... ..+...+. .+...|.+++|+||+++||+|+.||+|+|||+.+++
T Consensus 442 ~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~ 521 (902)
T 2oaj_A 442 LPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521 (902)
T ss_dssp CCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred cccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence 45667778999999999999999764311 01111111 456789999999999999999999999999997652
Q ss_pred ---------------------------------------------eEEEecccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 016769 341 ---------------------------------------------ALAILKYHHATCNAVSFSSDCKLMASASEDSTVAL 375 (383)
Q Consensus 341 ---------------------------------------------~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~ 375 (383)
++..+.+|.+.|.+++||||| +||+|+.|++|+|
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~l 600 (902)
T 2oaj_A 522 FYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLML 600 (902)
T ss_dssp C---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEE
T ss_pred ccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEE
Confidence 366788899999999999999 9999999999999
Q ss_pred EeCCCC
Q 016769 376 WELYPP 381 (383)
Q Consensus 376 w~~~~~ 381 (383)
||+..+
T Consensus 601 wd~~~~ 606 (902)
T 2oaj_A 601 IDRRGP 606 (902)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 998654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-31 Score=238.01 Aligned_cols=248 Identities=19% Similarity=0.303 Sum_probs=187.2
Q ss_pred eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEE
Q 016769 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~ 90 (383)
...+.||...|++++|++++.+|+||+.|++|++||+.+++++..+..+. ..+.+++++| ++..|++++.|+++++
T Consensus 73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~--~~~~~~~~sp--dg~~l~~g~~dg~v~i 148 (321)
T 3ow8_A 73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGP--VDAWTLAFSP--DSQYLATGTHVGKVNI 148 (321)
T ss_dssp EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCT--TCCCCEEECT--TSSEEEEECTTSEEEE
T ss_pred eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCC--ccEEEEEECC--CCCEEEEEcCCCcEEE
Confidence 34688999999999999999999999999999999998887766544332 3466788888 4689999999999999
Q ss_pred eecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCC
Q 016769 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGP 170 (383)
Q Consensus 91 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (383)
|+++++.. ...+... . . ......+.++++
T Consensus 149 ~~~~~~~~----~~~~~~~------------~----------~-------------------------~v~~~~~spdg~ 177 (321)
T 3ow8_A 149 FGVESGKK----EYSLDTR------------G----------K-------------------------FILSIAYSPDGK 177 (321)
T ss_dssp EETTTCSE----EEEEECS------------S----------S-------------------------CEEEEEECTTSS
T ss_pred EEcCCCce----eEEecCC------------C----------c-------------------------eEEEEEECCCCC
Confidence 99987631 1110000 0 0 000112334443
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCC
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 250 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~ 250 (383)
++ ++|+.|+.|++||+++++.+..+..+. ..+.++ .|.|+. ..+++|+.|++|++||+++.
T Consensus 178 -~l-asg~~dg~i~iwd~~~~~~~~~~~~h~----------~~v~~l---~~spd~----~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 178 -YL-ASGAIDGIINIFDIATGKLLHTLEGHA----------MPIRSL---TFSPDS----QLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp -EE-EEEETTSCEEEEETTTTEEEEEECCCS----------SCCCEE---EECTTS----CEEEEECTTSCEEEEETTTC
T ss_pred -EE-EEEcCCCeEEEEECCCCcEEEEEcccC----------CceeEE---EEcCCC----CEEEEEcCCCeEEEEECCCc
Confidence 34 456678999999999998777665321 112222 244432 36889999999999999874
Q ss_pred CCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCc
Q 016769 251 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 330 (383)
Q Consensus 251 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~ 330 (383)
.....+.+|..+|.+++|++++..+++++.|++|++||+.... +. ..+..+...|.+++|+|++++|++++.|++
T Consensus 239 -~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~--~~--~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 239 -NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT--CV--HTFFDHQDQVWGVKYNGNGSKIVSVGDDQE 313 (321)
T ss_dssp -CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EE--EEECCCSSCEEEEEECTTSSEEEEEETTCC
T ss_pred -ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE--EE--EEEcCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence 4567788999999999999999999999999999999997543 22 234456678999999999999999999999
Q ss_pred EEEEEcC
Q 016769 331 VRIYNYR 337 (383)
Q Consensus 331 i~iwd~~ 337 (383)
|++||+.
T Consensus 314 i~vwd~p 320 (321)
T 3ow8_A 314 IHIYDCP 320 (321)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999974
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=250.13 Aligned_cols=283 Identities=12% Similarity=0.111 Sum_probs=198.4
Q ss_pred CceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCC
Q 016769 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (383)
Q Consensus 19 ~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~ 98 (383)
..+++++|+|++++|++|+.|+.|++||..+.+....+..+ .......+.+ +++.|++++.|++|++||++++..
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA---DYTAVDTAKL--QMRRFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC---CEEEEEEECS--SSCEEEEEETTSCEEEECTTSCEE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC---CceEEEEEec--CCCEEEEEECCCCEEEEeCCCcce
Confidence 34568999999999999999999999999877665544332 2233335565 468899999999999999876531
Q ss_pred CCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccC
Q 016769 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGE 178 (383)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 178 (383)
.. . .... ... .....+.+++. + +++++
T Consensus 132 ~~-------~----------~~~h---------~~~-------------------------v~~~~~~~~~~-~-l~s~s 158 (420)
T 3vl1_A 132 RE-------I----------DQAH---------VSE-------------------------ITKLKFFPSGE-A-LISSS 158 (420)
T ss_dssp EE-------E----------TTSS---------SSC-------------------------EEEEEECTTSS-E-EEEEE
T ss_pred ee-------e----------cccc---------cCc-------------------------cEEEEECCCCC-E-EEEEe
Confidence 00 0 0000 000 00011233443 3 44566
Q ss_pred CcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeee
Q 016769 179 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 258 (383)
Q Consensus 179 ~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~ 258 (383)
.|+.|++||+++++.+..+..+ ...+.++ .+.|+. ..+++++.|++|++||+++. ..+..+.
T Consensus 159 ~d~~i~iwd~~~~~~~~~~~~h----------~~~v~~~---~~~~~~----~~l~s~~~d~~v~iwd~~~~-~~~~~~~ 220 (420)
T 3vl1_A 159 QDMQLKIWSVKDGSNPRTLIGH----------RATVTDI---AIIDRG----RNVLSASLDGTIRLWECGTG-TTIHTFN 220 (420)
T ss_dssp TTSEEEEEETTTCCCCEEEECC----------SSCEEEE---EEETTT----TEEEEEETTSCEEEEETTTT-EEEEEEC
T ss_pred CCCeEEEEeCCCCcCceEEcCC----------CCcEEEE---EEcCCC----CEEEEEcCCCcEEEeECCCC-ceeEEee
Confidence 7899999999998877666421 1222332 244432 25889999999999999874 3445554
Q ss_pred c---cccCeEEE---------------------EEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEE
Q 016769 259 V---HLEPVLCL---------------------SIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 314 (383)
Q Consensus 259 ~---h~~~v~~~---------------------~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~ 314 (383)
. |...+.++ .|++++..+++++.|+.|++||+....... .....+...+.+++
T Consensus 221 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v~~~~ 297 (420)
T 3vl1_A 221 RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI---QLPSKFTCSCNSLT 297 (420)
T ss_dssp BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE---EECCTTSSCEEEEE
T ss_pred cCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE---EcccccCCCceeEE
Confidence 3 33444444 446778889999999999999997543221 12233556899999
Q ss_pred ECCCCc-EEEEEeCCCcEEEEEcCCCce-EEEecc-cccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 315 IRPDSK-IAATAGWDRRVRIYNYRKGSA-LAILKY-HHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 315 ~~p~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~-h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
|+|+++ +|++++.||+|++||+++++. +..+.+ |...|.++.| |++++|++++.|+.|++|++..+
T Consensus 298 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 298 VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred EeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 999998 999999999999999998754 666766 6667888755 57889999999999999998753
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=261.13 Aligned_cols=344 Identities=16% Similarity=0.180 Sum_probs=215.9
Q ss_pred CCCeeeeeecCC---ceeeEEEeCC-CCeEEEecCCCeEEEeeCccccccccc-c---cccccceeeeeeecCCCCccee
Q 016769 8 PDPVAVLRGHRA---SVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSS-W---VHSAAHGIVSVATGPSIGLNKV 79 (383)
Q Consensus 8 ~~~~~~l~gH~~---~V~~v~f~~~-~~~L~sgs~D~~v~vW~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~l 79 (383)
.+++..+.+|.+ .|++++|+|+ +++|++|+.|+.|++||+.+++.+..+ . .| ...+.++.+. ++..|
T Consensus 193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~---~~~~l 267 (615)
T 1pgu_A 193 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV--QGGIFALSWL---DSQKF 267 (615)
T ss_dssp BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC--CSCEEEEEES---SSSEE
T ss_pred cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc--CCceEEEEEc---CCCEE
Confidence 345678889999 9999999999 999999999999999999887766654 2 23 2457777877 35889
Q ss_pred EecccCCeEEEeecCCCCCCCCCeeeeecC----ceeeeeEEeeccccccccccCCCCccceec----------------
Q 016769 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTN----SYHFCKLSLVKEPYANAKQANEPKDCYERE---------------- 139 (383)
Q Consensus 80 ~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 139 (383)
++++.|++|++||+++++... .+... .....................+....+...
T Consensus 268 ~~~~~d~~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~ 343 (615)
T 1pgu_A 268 ATVGADATIRVWDVTTSKCVQ----KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGIT 343 (615)
T ss_dssp EEEETTSEEEEEETTTTEEEE----EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEE
T ss_pred EEEcCCCcEEEEECCCCcEEE----EEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEE
Confidence 999999999999998764311 11111 000000000000000000000000000000
Q ss_pred ---c---------CcccccCccccccccCCccce-ecccCCCCCceeeeccCCcceEEEEecCCCCeee---Eec--cCc
Q 016769 140 ---V---------GETVDTDSLCDSKESNRSFEI-IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT---RLH--QNS 201 (383)
Q Consensus 140 ---~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~---~~~--~~~ 201 (383)
+ +....+... ... ......+ ...+ +++. .+ ++++.++.+++||+++++... .+. .+.
T Consensus 344 ~~~~~~l~~~~~dg~i~~w~~~-~~~-~~~~~~v~~~~~-~~~~-~l-~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~ 418 (615)
T 1pgu_A 344 ALTVNPLISGSYDGRIMEWSSS-SMH-QDHSNLIVSLDN-SKAQ-EY-SSISWDDTLKVNGITKHEFGSQPKVASANNDG 418 (615)
T ss_dssp EEETTTTEEEETTSCEEETTTT-EEE-CCCCSCEEEEEC-CSTT-CC-EEEETTTEEEETTEEEEECSSCEEEEEECSSS
T ss_pred EEEecCcEEECCCCeEEEEEch-hhc-CcccCceEEEEE-CCCc-EE-EEEeCCCCEEEEEcccCcccCCceEEEEcCCC
Confidence 0 000000000 000 0000000 0111 2222 23 344567788888876533100 000 000
Q ss_pred C----------------CCCC--CcCCCCCceeeEEEeecCCCCCCceEEEEEeC-CCcEEEEeCCCCCCceeeeecccc
Q 016769 202 C----------------GGSP--NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNPGIPLTAMKVHLE 262 (383)
Q Consensus 202 ~----------------~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~-dg~i~~wdl~~~~~~~~~~~~h~~ 262 (383)
. .... .+.......++ .+. ...+++++. |+.|++||+.+.......+..|..
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 489 (615)
T 1pgu_A 419 FTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV---SLS------QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA 489 (615)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE---EEC------SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS
T ss_pred CEEEEeCCCceEEEeccCCceeeecccCCCceEE---EEc------CCEEEEeecCCCeEEEEECCCccccccccCCccC
Confidence 0 0000 00000011111 111 125888999 999999999863221155677899
Q ss_pred CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeec-CCCCeEEEEECC----------CCcEEEEEeCCCcE
Q 016769 263 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-ERPGISGTSIRP----------DSKIAATAGWDRRV 331 (383)
Q Consensus 263 ~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~-~~~~i~~~~~~p----------~~~~l~s~~~dg~i 331 (383)
+|.++.|++++..+++++.|+.|++||++... .. ..... +...+++++|+| ++++|++++.||+|
T Consensus 490 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~--~~--~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i 565 (615)
T 1pgu_A 490 KPSYISISPSETYIAAGDVMGKILLYDLQSRE--VK--TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 565 (615)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EE--ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCE
T ss_pred ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc--ce--eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcE
Confidence 99999999999999999999999999997542 22 22333 667899999999 99999999999999
Q ss_pred EEEEcCCC-ceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 332 RIYNYRKG-SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 332 ~iwd~~~~-~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
++||+.++ +.+..+.+|...|.+++|+||++ |++++.|+.|++|++.
T Consensus 566 ~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 566 FIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred EEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 99999998 78888999999999999999999 9999999999999985
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=281.55 Aligned_cols=360 Identities=16% Similarity=0.214 Sum_probs=232.7
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
.+.+.++.+|.+.|++++|+|++++|++|+.|++|+|||+.+++++..+..|. ..+.++.+.+..+...+++++.|++
T Consensus 647 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~sg~~d~~ 724 (1249)
T 3sfz_A 647 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS--EQVNCCHFTNKSNHLLLATGSNDFF 724 (1249)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECSSSSCCEEEEEETTSC
T ss_pred CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--CcEEEEEEecCCCceEEEEEeCCCe
Confidence 35677899999999999999999999999999999999999888776665543 4678889988544567889999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccc-cCCCCccceeccC-------------------------
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVG------------------------- 141 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------------------- 141 (383)
|++||++++.... .+..+........+.......+.. ..+....|+...+
T Consensus 725 v~vwd~~~~~~~~----~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1249)
T 3sfz_A 725 LKLWDLNQKECRN----TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800 (1249)
T ss_dssp EEEEETTSSSEEE----EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred EEEEECCCcchhh----eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccce
Confidence 9999998875321 111111000000000000000000 0000000100000
Q ss_pred -------------------cccccCccccc----cccCC-ccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEe
Q 016769 142 -------------------ETVDTDSLCDS----KESNR-SFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 197 (383)
Q Consensus 142 -------------------~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~ 197 (383)
....+...... ..... .......+++++. + +++++.++.|++||+.++..+..+
T Consensus 801 v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~-l~~~~~dg~v~vwd~~~~~~~~~~ 878 (1249)
T 3sfz_A 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-L-AVIALSQYCVELWNIDSRLKVADC 878 (1249)
T ss_dssp BCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-E-EEEECSSSCEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-E-EEEEeCCCeEEEEEcCCCceeeec
Confidence 00000000000 00000 0011112334443 3 445566899999999988876665
Q ss_pred ccCcC-CCCCCcCCCCCceeeE----------------------------------------------------------
Q 016769 198 HQNSC-GGSPNFSSKGRGMCMA---------------------------------------------------------- 218 (383)
Q Consensus 198 ~~~~~-~~s~~~~~~~~~~~~~---------------------------------------------------------- 218 (383)
..+.. +.++.+++.+..+..+
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY 958 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE
T ss_pred CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE
Confidence 53221 1112222222111100
Q ss_pred -------EEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEcc
Q 016769 219 -------VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 291 (383)
Q Consensus 219 -------~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~ 291 (383)
...+.|. ...+++|+.||.|++||+.+. .....+..|..+|.++.|++++..+++++.|+.|++||+.
T Consensus 959 ~~~~~i~~~~~sp~----g~~l~~g~~~g~i~i~d~~~~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 959 LPEAQVSCCCLSPH----LEYVAFGDEDGAIKIIELPNN-RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp ECCSCEEEEEECTT----SSEEEEEETTSCCEEEETTTT-SCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETT
T ss_pred cccCcEEEEEEcCC----CCEEEEEcCCCCEEEEEcCCC-ceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 0012221 225778888888999988764 4466778899999999999999999999999999999986
Q ss_pred CCCCee------------------E------------------EeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEE
Q 016769 292 HSTGSC------------------V------------------IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 335 (383)
Q Consensus 292 ~~~~~~------------------~------------------~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd 335 (383)
...... . ....+..+...+.+++|+|+++++++++.|++|++||
T Consensus 1034 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd 1113 (1249)
T 3sfz_A 1034 TGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113 (1249)
T ss_dssp TTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEEC
T ss_pred CCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 431100 0 0011233556788999999999999999999999999
Q ss_pred cCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 336 YRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 336 ~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+.+++.+..+.+|...|.+++|+|||++||+|+.||.|++||+..
T Consensus 1114 ~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1114 FDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp SSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSS
T ss_pred CCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 999999989999999999999999999999999999999999864
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-31 Score=269.96 Aligned_cols=353 Identities=10% Similarity=0.067 Sum_probs=211.0
Q ss_pred eeeecCCceeeEEEeCC-CCeEEEecCCCeEEEeeCccccccccccccc----------------ccceeeeeeecCCCC
Q 016769 13 VLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHS----------------AAHGIVSVATGPSIG 75 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~-~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 75 (383)
.+++|.+.|++|+|+|+ +..|++|+.|+.| +||+.+++++..+..|. ....+.+++|+|+
T Consensus 146 ~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd-- 222 (902)
T 2oaj_A 146 FPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN-- 222 (902)
T ss_dssp CSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT--
T ss_pred ccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC--
Confidence 45789999999999996 5799999999999 99998876654443330 0135889999984
Q ss_pred cceeEecccCCeEEEeecCCCCCCCCCeeee-----e-------------cCceeeeeEEeecccc---ccccccCCC--
Q 016769 76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTI-----K-------------TNSYHFCKLSLVKEPY---ANAKQANEP-- 132 (383)
Q Consensus 76 ~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~-----~-------------~~~~~~~~~~~~~~~~---~~~~~~~~~-- 132 (383)
+..|++++.|++|++||+.+++.... ..+ + ........+.....+. ..+......
T Consensus 223 g~~lasgs~Dg~i~lWd~~~g~~~~~--r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~ 300 (902)
T 2oaj_A 223 SLHIITIHEDNSLVFWDANSGHMIMA--RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG 300 (902)
T ss_dssp SSEEEEEETTCCEEEEETTTCCEEEE--ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred CCEEEEEECCCeEEEEECCCCcEEEE--EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence 78999999999999999988753210 000 0 0000001111111110 000000000
Q ss_pred --CccceeccCcc--ccc-----------Ccccc-ccc--cCCc---cceecccCC-----CCCceeeeccCCcceEEEE
Q 016769 133 --KDCYEREVGET--VDT-----------DSLCD-SKE--SNRS---FEIIDDVPA-----EGPKYMAVAGEQLSEVEIW 186 (383)
Q Consensus 133 --~~~~~~~~~~~--~~~-----------~~~~~-~~~--~~~~---~~~~~~~~~-----~~~~~~~~~g~~~~~i~~W 186 (383)
........+.. ... ..... ... .... +.+....++ .++..+++ ++.++.|++|
T Consensus 301 ~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~-~s~dg~l~~~ 379 (902)
T 2oaj_A 301 DNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL-ILGNGEIETM 379 (902)
T ss_dssp SCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEE-EETTSCEEEE
T ss_pred CCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEE-EcCCCcEEEE
Confidence 00000000000 000 00000 000 0000 000000001 11223443 3457899999
Q ss_pred ecCCCCeeeEeccCcCCCCCCcCCCCCceeeEE-------------------------------EeecCCCCCCceEEEE
Q 016769 187 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV-------------------------------QAYLPSKSQGFVNVLA 235 (383)
Q Consensus 187 dl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~s 235 (383)
|+.++.......+.. ..... ....+.++++ ..|.| +...+++
T Consensus 380 ~~~~g~~~~~~~~~~--~~l~~-~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp----dg~~laS 452 (902)
T 2oaj_A 380 LYPSGIFTDKASLFP--QNLSW-LRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE----YGTAFIT 452 (902)
T ss_dssp ETTTCCEECCGGGSC--GGGTT-BTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS----EEEEEEE
T ss_pred ECCCCCcccccccCC--Ccccc-cCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc----cCcEEEE
Confidence 997765332210000 00000 0000111110 01222 2346889
Q ss_pred EeCCCcEEEEeCCCCCCc-eeee----e-----ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCC----------
Q 016769 236 GYEDGSILVWDIRNPGIP-LTAM----K-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG---------- 295 (383)
Q Consensus 236 g~~dg~i~~wdl~~~~~~-~~~~----~-----~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~---------- 295 (383)
|+.|++|++||+..+... ...+ . +|...|.+++|+|++..+++|+.|++|++||++....
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~ 532 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESG 532 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----------
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCc
Confidence 999999999999864211 0111 1 6888999999999999999999999999999975310
Q ss_pred e-------------------------------eEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEE-
Q 016769 296 S-------------------------------CVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA- 343 (383)
Q Consensus 296 ~-------------------------------~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~- 343 (383)
. ......+..+...|++++|+||| +||+|+.|++|++||++.+..+.
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~ 611 (902)
T 2oaj_A 533 DLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYM 611 (902)
T ss_dssp -----CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred ccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEE
Confidence 0 00112344577889999999999 99999999999999998877653
Q ss_pred ----Eec-ccccceeEEEEe-----CCC---CEEEEEeCCCcEEEEeCC
Q 016769 344 ----ILK-YHHATCNAVSFS-----SDC---KLMASASEDSTVALWELY 379 (383)
Q Consensus 344 ----~~~-~h~~~v~~v~~s-----pd~---~~las~s~d~~i~~w~~~ 379 (383)
.+. +|...|.+|+|+ ||| ++|++|+.|++|++||+.
T Consensus 612 ~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~ 660 (902)
T 2oaj_A 612 ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKIL 660 (902)
T ss_dssp EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred eehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEe
Confidence 232 899999999999 886 799999999999999983
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-30 Score=252.65 Aligned_cols=306 Identities=14% Similarity=0.201 Sum_probs=202.6
Q ss_pred CCeeeeeecCCceeeEEEeCCCC-eEEEecCCCeEEEeeCcccccccccccccc-cceeeeeeecCCCCcceeEecccCC
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGRDG 86 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~-~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (383)
+++..+.+|.+.|++++|+|+++ +|++++.|+.|++||..+.+.+..+..|.. ...+.++++.++ +++.|++++.|+
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg 229 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDR 229 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTC
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCC-CCCEEEEEeCCC
Confidence 45677889999999999999998 899999999999999988777666554432 115788999883 168899999999
Q ss_pred eEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 87 ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
+|++||+++++... .+. .... .....+ ....+.
T Consensus 230 ~i~vwd~~~~~~~~----~~~------------~~~~------~~~~~v-------------------------~~~~~~ 262 (615)
T 1pgu_A 230 KISCFDGKSGEFLK----YIE------------DDQE------PVQGGI-------------------------FALSWL 262 (615)
T ss_dssp CEEEEETTTCCEEE----ECC------------BTTB------CCCSCE-------------------------EEEEES
T ss_pred eEEEEECCCCCEeE----Eec------------cccc------ccCCce-------------------------EEEEEc
Confidence 99999998764210 000 0000 000000 001122
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
++ +++ ++++.++.|++||+++++.+..+..... .......+.. + +. ...+++++.|+.|++||
T Consensus 263 -~~-~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~---~-~~----~~~l~~~~~~g~i~~~d 325 (615)
T 1pgu_A 263 -DS-QKF-ATVGADATIRVWDVTTSKCVQKWTLDKQ------QLGNQQVGVV---A-TG----NGRIISLSLDGTLNFYE 325 (615)
T ss_dssp -SS-SEE-EEEETTSEEEEEETTTTEEEEEEECCTT------CGGGCEEEEE---E-EE----TTEEEEEETTSCEEEEE
T ss_pred -CC-CEE-EEEcCCCcEEEEECCCCcEEEEEcCCCC------cccCceeEEE---e-CC----CCeEEEEECCCCEEEEE
Confidence 22 334 4456679999999999887766653210 0000111111 1 11 12466777777777777
Q ss_pred CCCCCCceeeeeccccC---------------------------------eEEEEEeCCCCceEEEEcCCcEEEEEccCC
Q 016769 247 IRNPGIPLTAMKVHLEP---------------------------------VLCLSIDESCNGGISGGADQKIVLYNLDHS 293 (383)
Q Consensus 247 l~~~~~~~~~~~~h~~~---------------------------------v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~ 293 (383)
+++ ..++..+..|..+ |.++.+ +.+..+++++.|+.+++||+...
T Consensus 326 ~~~-~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~ 403 (615)
T 1pgu_A 326 LGH-DEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKH 403 (615)
T ss_dssp TTE-EEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEE
T ss_pred CCC-CcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccC
Confidence 764 2233344444433 344444 22344555555555555554321
Q ss_pred C--------------------------------------------------------------Cee--------EEe-ee
Q 016769 294 T--------------------------------------------------------------GSC--------VIK-KE 302 (383)
Q Consensus 294 ~--------------------------------------------------------------~~~--------~~~-~~ 302 (383)
. +.. ... ..
T Consensus 404 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~ 483 (615)
T 1pgu_A 404 EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL 483 (615)
T ss_dssp ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred cccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccc
Confidence 0 000 000 22
Q ss_pred eecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecc-cccceeEEEEeC----------CCCEEEEEeCCC
Q 016769 303 INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY-HHATCNAVSFSS----------DCKLMASASEDS 371 (383)
Q Consensus 303 ~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~sp----------d~~~las~s~d~ 371 (383)
...+...+.+++|+|++++|++++.||+|++||+.+++.+..+.+ |...|.+++|+| ++++||+|+.|+
T Consensus 484 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg 563 (615)
T 1pgu_A 484 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 563 (615)
T ss_dssp SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS
T ss_pred cCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC
Confidence 334567799999999999999999999999999999999988888 999999999999 999999999999
Q ss_pred cEEEEeCCCC
Q 016769 372 TVALWELYPP 381 (383)
Q Consensus 372 ~i~~w~~~~~ 381 (383)
.|++||+..+
T Consensus 564 ~i~iw~~~~~ 573 (615)
T 1pgu_A 564 NIFIYSVKRP 573 (615)
T ss_dssp CEEEEESSCT
T ss_pred cEEEEECCCC
Confidence 9999999653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-30 Score=245.39 Aligned_cols=308 Identities=18% Similarity=0.238 Sum_probs=211.9
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
.+++.++.+|.+.|++++|+|++ +|++|+.||+|++||+.+++++..+..|. ..+.++.+.+..++..+++++.|++
T Consensus 152 ~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~l~s~s~d~~ 228 (464)
T 3v7d_B 152 KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHN--STVRCLDIVEYKNIKYIVTGSRDNT 228 (464)
T ss_dssp TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEEESSSCEEEEEEETTSC
T ss_pred CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCC--CccEEEEEecCCCCCEEEEEcCCCc
Confidence 34667889999999999999988 99999999999999999887776655443 4577777775435678999999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
|++||++++....... . ..... .. ...+.. ......... . ....+..+.+
T Consensus 229 i~vwd~~~~~~~~~~~--~-~~~~~---~~-~~~~~~-------~~~~~~~~~---------~-------~~~~v~~~~~ 278 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHG--E-EHDYP---LV-FHTPEE-------NPYFVGVLR---------G-------HMASVRTVSG 278 (464)
T ss_dssp EEEEECCCCCCC---------CCSS---EE-ESCGGG-------CTTEEEEEC---------C-------CSSCEEEEEE
T ss_pred EEEeeCCCCccccccc--c-cCCcc---eE-eeccCC-------CeEEEEEcc---------C-------ccceEEEEcC
Confidence 9999998764221100 0 00000 00 000000 000000000 0 0001111223
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
++. + +++++.++.|++||+++++.+..+..+ .....++ .+.+.. ..+++|+.||+|++||+
T Consensus 279 ~~~-~-l~~~~~d~~i~vwd~~~~~~~~~~~~~----------~~~v~~~---~~~~~~----~~l~sg~~dg~i~vwd~ 339 (464)
T 3v7d_B 279 HGN-I-VVSGSYDNTLIVWDVAQMKCLYILSGH----------TDRIYST---IYDHER----KRCISASMDTTIRIWDL 339 (464)
T ss_dssp ETT-E-EEEEETTSCEEEEETTTTEEEEEECCC----------SSCEEEE---EEETTT----TEEEEEETTSCEEEEET
T ss_pred CCC-E-EEEEeCCCeEEEEECCCCcEEEEecCC----------CCCEEEE---EEcCCC----CEEEEEeCCCcEEEEEC
Confidence 333 3 445667899999999998877766431 1222222 244432 25889999999999999
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 327 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~ 327 (383)
++ +.++..++.|..+|.++.+++ ..+++++.|+.|++||++.... .... .+...+..++|+|+++++++++
T Consensus 340 ~~-~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~v~vwd~~~~~~--~~~~---~~~~~~~~~~~~~~~~~l~~~~- 410 (464)
T 3v7d_B 340 EN-GELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR--KFSY---HHTNLSAITTFYVSDNILVSGS- 410 (464)
T ss_dssp TT-TEEEEEECCCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCE--EEEE---ECTTCCCEEEEEECSSEEEEEE-
T ss_pred CC-CcEEEEEeCCCCcEEEEEEcC--CEEEEEeCCCcEEEEECCCCce--eeee---cCCCCccEEEEEeCCCEEEEec-
Confidence 87 456778889999999999984 6789999999999999986432 2111 2344577889999999999988
Q ss_pred CCcEEEEEcCCCceEEE-ecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 328 DRRVRIYNYRKGSALAI-LKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 328 dg~i~iwd~~~~~~~~~-~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
|++|++||+.+++.+.. +..|...|.+++|+ +..++++++.|+.+.+|-
T Consensus 411 dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 411 ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 99999999999998875 66789999999998 345667777787666554
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-30 Score=235.74 Aligned_cols=283 Identities=15% Similarity=0.181 Sum_probs=184.9
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCccee-EecccCC
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDG 86 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~ 86 (383)
.+++..+.+|.+.|++++|+|||++|++|+.|+ ++||+..+.+...... . .++..+.+.+. .+.+ ++++.|+
T Consensus 9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~--~~~~~~~~~~~--~~~~~~~~~~d~ 81 (355)
T 3vu4_A 9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--M--RHLSKVRMLHR--TNYVAFVTGVKE 81 (355)
T ss_dssp ----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--C--SCCCEEEECTT--SSEEEEECSSTT
T ss_pred cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--c--CCeEEEEEcCC--CCEEEEEECCcc
Confidence 345667899999999999999999999998775 7899987665443321 1 13444555543 3444 6788899
Q ss_pred eEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 87 ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
+|++||+.+++... .+ .. .. .+.. ..+.
T Consensus 82 ~v~iWd~~~~~~~~----~~----------~~---~~----------~v~~-------------------------v~~~ 109 (355)
T 3vu4_A 82 VVHIWDDVKKQDVS----RI----------KV---DA----------PVKD-------------------------LFLS 109 (355)
T ss_dssp EEEEEETTTTEEEE----EE----------EC---SS----------CEEE-------------------------EEEC
T ss_pred EEEEEECCCCcEEE----EE----------EC---CC----------ceEE-------------------------EEEc
Confidence 99999998764211 00 00 00 0000 0011
Q ss_pred CCCCceeeeccCCcceEEEEecCCC-CeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEE-EeCCCcEEE
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYEDGSILV 244 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-g~~dg~i~~ 244 (383)
+ ..++++. ++.|++||+.+. +.+..+.. ...+..+.+ ...+++ |+.||.|++
T Consensus 110 ~---~~~~~~~--~~~i~i~d~~~~~~~~~~~~~----------------~~~~~~~s~-----~~la~~sg~~~g~v~i 163 (355)
T 3vu4_A 110 R---EFIVVSY--GDVISVFKFGNPWKRITDDIR----------------FGGVCEFSN-----GLLVYSNEFNLGQIHI 163 (355)
T ss_dssp S---SEEEEEE--TTEEEEEESSTTCCBSSCCEE----------------EEEEEEEET-----TEEEEEESSCTTCEEE
T ss_pred C---CEEEEEE--cCEEEEEECCCCceeeEEecc----------------CCceEEEEc-----cEEEEeCCCcCcEEEE
Confidence 1 1233332 568999999887 54433321 011112222 112333 789999999
Q ss_pred EeCCCCC--------------Cc-eeeeeccccCeEEEEEeCCCCceEEEEcCCc-EEEEEccCCCCeeEEeeeee-c-C
Q 016769 245 WDIRNPG--------------IP-LTAMKVHLEPVLCLSIDESCNGGISGGADQK-IVLYNLDHSTGSCVIKKEIN-L-E 306 (383)
Q Consensus 245 wdl~~~~--------------~~-~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~-i~~wdl~~~~~~~~~~~~~~-~-~ 306 (383)
||+++.. .+ +..+++|..+|.+++|++++..+++++.|++ |++||+..... .. .+. . +
T Consensus 164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~--~~--~~~~g~h 239 (355)
T 3vu4_A 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL--VR--EFRRGLD 239 (355)
T ss_dssp EECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE--EE--EEECTTC
T ss_pred EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE--EE--EEEcCCC
Confidence 9998643 12 5678899999999999999999999999998 99999975432 22 233 2 6
Q ss_pred CCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCce--EEEec---------------------ccccceeEEEEeCCCCE
Q 016769 307 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA--LAILK---------------------YHHATCNAVSFSSDCKL 363 (383)
Q Consensus 307 ~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~---------------------~h~~~v~~v~~spd~~~ 363 (383)
...|.+++|+|++++|++++.|++|++||+..+.. ...+. .+......++|+||+++
T Consensus 240 ~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~ 319 (355)
T 3vu4_A 240 RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL 319 (355)
T ss_dssp CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE
T ss_pred CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCE
Confidence 67899999999999999999999999999976431 11111 11223467899999999
Q ss_pred EEEEeCCCcEEEEeCC
Q 016769 364 MASASEDSTVALWELY 379 (383)
Q Consensus 364 las~s~d~~i~~w~~~ 379 (383)
|++++.||.+++|++.
T Consensus 320 l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 320 VVVWPHTRMIETFKVV 335 (355)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEEeCCCeEEEEEEE
Confidence 9999999999999975
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-30 Score=259.03 Aligned_cols=293 Identities=16% Similarity=0.207 Sum_probs=218.3
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
+...+|.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+..|. ..+.++.|++ ++.+|++++.|++|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~--~~v~~~~~s~--~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTE--TPVRAGKFIA--RKNWIIVGSDDFRI 79 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEEEG--GGTEEEEEETTSEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCC--CcEEEEEEeC--CCCEEEEEeCCCeE
Confidence 4567899999999999999999999999999999999998877766655443 4588899998 46889999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++||+++++.. ..+..+.. . .....++++
T Consensus 80 ~vw~~~~~~~~----~~~~~~~~----------------------~-------------------------v~~~~~s~~ 108 (814)
T 3mkq_A 80 RVFNYNTGEKV----VDFEAHPD----------------------Y-------------------------IRSIAVHPT 108 (814)
T ss_dssp EEEETTTCCEE----EEEECCSS----------------------C-------------------------EEEEEECSS
T ss_pred EEEECCCCcEE----EEEecCCC----------------------C-------------------------EEEEEEeCC
Confidence 99999876421 11100000 0 000122344
Q ss_pred CCceeeeccCCcceEEEEecCCCC-eeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
++ ++ ++++.++.|++||++++. ....+.. +.....++. |.|. +...+++++.||+|++||+
T Consensus 109 ~~-~l-~~~~~dg~i~vw~~~~~~~~~~~~~~----------~~~~v~~~~---~~p~---~~~~l~~~~~dg~v~vwd~ 170 (814)
T 3mkq_A 109 KP-YV-LSGSDDLTVKLWNWENNWALEQTFEG----------HEHFVMCVA---FNPK---DPSTFASGCLDRTVKVWSL 170 (814)
T ss_dssp SS-EE-EEEETTSEEEEEEGGGTSEEEEEEEC----------CSSCEEEEE---EETT---EEEEEEEEETTSEEEEEET
T ss_pred CC-EE-EEEcCCCEEEEEECCCCceEEEEEcC----------CCCcEEEEE---EEcC---CCCEEEEEeCCCeEEEEEC
Confidence 43 33 456678999999998874 3333332 112233332 4441 1236889999999999999
Q ss_pred CCCCCceeeeeccccCeEEEEEeC--CCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEE
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDE--SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 325 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~ 325 (383)
++..........|..++.++.+++ ++..+++++.|+.|++||+.... . ...+..+...+.+++|+|++++++++
T Consensus 171 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~--~~~~~~~~~~v~~~~~~~~~~~l~~~ 246 (814)
T 3mkq_A 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS--C--VATLEGHMSNVSFAVFHPTLPIIISG 246 (814)
T ss_dssp TCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE--E--EEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred CCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc--E--EEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 875543333334448899999988 88889999999999999987543 2 22344566789999999999999999
Q ss_pred eCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCC--EEEEEeCCCcEEEEeCC
Q 016769 326 GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK--LMASASEDSTVALWELY 379 (383)
Q Consensus 326 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~--~las~s~d~~i~~w~~~ 379 (383)
+.||+|++||+.+++.+..+..|...+.+++|+|+++ ++++++ |+.+.+|++.
T Consensus 247 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 301 (814)
T 3mkq_A 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLG 301 (814)
T ss_dssp ETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECS
T ss_pred eCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcC
Confidence 9999999999999999999999999999999999997 455555 6668888875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-29 Score=230.76 Aligned_cols=288 Identities=18% Similarity=0.225 Sum_probs=206.6
Q ss_pred ecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCC
Q 016769 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~ 95 (383)
-|.++|++++|+|||++|+++..++.+.+|+............| ...+.++++++ ++..+++++ |++|++||+++
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNH--GEVVCAVTISN--PTRHVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECC--SSCCCEEEECS--SSSEEEEEC-BSEEEEEETTS
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccC--CCceEEEEEec--CCcEEEEcC-CCeEEEEECCC
Confidence 35689999999999999999998888877766544333322233 34678889988 467888888 99999999987
Q ss_pred CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeee
Q 016769 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAV 175 (383)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (383)
+..... ...+. ... . .. ......+.+++. +++
T Consensus 82 ~~~~~~-~~~~~----------~~~-~---------~~-------------------------~v~~~~~~~~~~-~l~- 113 (337)
T 1gxr_A 82 PGNKSP-VSQLD----------CLN-R---------DN-------------------------YIRSCKLLPDGC-TLI- 113 (337)
T ss_dssp TTCCSC-SEEEE----------CSC-T---------TS-------------------------BEEEEEECTTSS-EEE-
T ss_pred CCceee-eeccc----------ccC-C---------CC-------------------------cEEEEEEcCCCC-EEE-
Confidence 642111 00000 000 0 00 000011233433 344
Q ss_pred ccCCcceEEEEecCCCCe--eeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCc
Q 016769 176 AGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 253 (383)
Q Consensus 176 ~g~~~~~i~~Wdl~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~ 253 (383)
+++.++.|++||+++++. ...+.. +.....++ .+.++ ...+++++.|+.|++||+++. ..
T Consensus 114 ~~~~d~~i~~~d~~~~~~~~~~~~~~----------~~~~i~~~---~~~~~----~~~l~~~~~dg~v~~~d~~~~-~~ 175 (337)
T 1gxr_A 114 VGGEASTLSIWDLAAPTPRIKAELTS----------SAPACYAL---AISPD----SKVCFSCCSDGNIAVWDLHNQ-TL 175 (337)
T ss_dssp EEESSSEEEEEECCCC--EEEEEEEC----------SSSCEEEE---EECTT----SSEEEEEETTSCEEEEETTTT-EE
T ss_pred EEcCCCcEEEEECCCCCcceeeeccc----------CCCceEEE---EECCC----CCEEEEEeCCCcEEEEeCCCC-ce
Confidence 456679999999988763 233321 11122222 24443 235889999999999999874 45
Q ss_pred eeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEE
Q 016769 254 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 333 (383)
Q Consensus 254 ~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~i 333 (383)
...++.|..++.++.+++++..+++++.|+.|++||++... .... . .+...+.+++|+|+++++++++.|+.|++
T Consensus 176 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~--~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~ 250 (337)
T 1gxr_A 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR--QLQQ--H-DFTSQIFSLGYCPTGEWLAVGMESSNVEV 250 (337)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEE--E-ECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc--eEee--e-cCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence 67788899999999999999999999999999999997543 2211 1 23467999999999999999999999999
Q ss_pred EEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 334 YNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 334 wd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
||+.+++.. .+..|...|.+++|+|++++|++++.|+.|++||+..
T Consensus 251 ~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 251 LHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp EETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 999888754 5678999999999999999999999999999999864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.9e-30 Score=236.95 Aligned_cols=256 Identities=18% Similarity=0.254 Sum_probs=172.2
Q ss_pred eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccc--cccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW--VHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
.....+|.+.|++|+|+|++. +++++.||+|+|||+.+++...... ...+...+.+++++| ++++|++++.|++|
T Consensus 87 ~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~sgs~dg~v 163 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS--DGTQAVSGGKDFSV 163 (357)
T ss_dssp CSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS--SSSEEEEEETTSCE
T ss_pred ecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC--CCCEEEEEeCCCeE
Confidence 345678999999999999985 5568899999999998776543322 112234688899998 46899999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++||++++.... .+..+.. .+ ....+.++
T Consensus 164 ~iwd~~~~~~~~----~~~~h~~----------------------~v-------------------------~~v~~s~~ 192 (357)
T 4g56_B 164 KVWDLSQKAVLK----SYNAHSS----------------------EV-------------------------NCVAACPG 192 (357)
T ss_dssp EEEETTTTEEEE----EECCCSS----------------------CE-------------------------EEEEECTT
T ss_pred EEEECCCCcEEE----EEcCCCC----------------------CE-------------------------EEEEEccC
Confidence 999998763210 0000000 00 00112233
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
+.. ++++++.|++|++||+++++.+..+... .......+ + .|.|.+ ...+++|+.|+.|++||++
T Consensus 193 ~~~-~~~s~~~dg~v~~wd~~~~~~~~~~~~~--------~~~~~v~~--v-~~sp~~---~~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 193 KDT-IFLSCGEDGRILLWDTRKPKPATRIDFC--------ASDTIPTS--V-TWHPEK---DDTFACGDETGNVSLVNIK 257 (357)
T ss_dssp CSS-CEEEEETTSCEEECCTTSSSCBCBCCCT--------TCCSCEEE--E-EECTTS---TTEEEEEESSSCEEEEESS
T ss_pred CCc-eeeeeccCCceEEEECCCCceeeeeeec--------cccccccc--h-hhhhcc---cceEEEeecccceeEEECC
Confidence 333 3445567899999999998765444321 11111222 2 355542 2257789999999999998
Q ss_pred CCCCceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC-CCcEEEEEe
Q 016769 249 NPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAG 326 (383)
Q Consensus 249 ~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~s~~ 326 (383)
++ ..+..+..|..+|.+++|++++. .+++++.|++|++||++.. ... ....|...|++++|+| ++++|++++
T Consensus 258 ~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~--~~~---~~~~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 258 NP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS--EVF---RDLSHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp CG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC--EEE---EECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred CC-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC--cEe---EECCCCCCEEEEEEeCCCCCEEEEEc
Confidence 74 45677889999999999998774 6789999999999998743 222 1234677899999998 789999999
Q ss_pred CCCcEEEEEcCCCce
Q 016769 327 WDRRVRIYNYRKGSA 341 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~ 341 (383)
.||+|++||+.+...
T Consensus 332 ~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 332 WDHKVLHHHLPSEGR 346 (357)
T ss_dssp TTSCEEEEECC----
T ss_pred CCCeEEEEECCCCCc
Confidence 999999999976443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-30 Score=232.42 Aligned_cols=258 Identities=17% Similarity=0.245 Sum_probs=177.3
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
++.+|.+|+..|++++|+|++++|+|||.|++|+|||+.+++++..+..|. ..+.++++.+ ++..+++++.|++|+
T Consensus 57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~s~D~~i~ 132 (319)
T 3frx_A 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHK--SDVMSVDIDK--KASMIISGSRDKTIK 132 (319)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECT--TSCEEEEEETTSCEE
T ss_pred cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCC--CcEEEEEEcC--CCCEEEEEeCCCeEE
Confidence 567899999999999999999999999999999999999888776665554 4588889988 468899999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+||+.... ...+..+... +....... ......+
T Consensus 133 vwd~~~~~-----~~~~~~h~~~----------------------v~~~~~~~-------------------~~~~~~~- 165 (319)
T 3frx_A 133 VWTIKGQC-----LATLLGHNDW----------------------VSQVRVVP-------------------NEKADDD- 165 (319)
T ss_dssp EEETTSCE-----EEEECCCSSC----------------------EEEEEECC-------------------C-------
T ss_pred EEECCCCe-----EEEEeccCCc----------------------EEEEEEcc-------------------CCCCCCC-
Confidence 99986421 1111000000 00000000 0000001
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
..++++++.|+.|++||+++.+....+..+ ...+.++ .+.|+. ..+++|+.||+|++||+++
T Consensus 166 -~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h----------~~~v~~~---~~sp~g----~~l~s~~~dg~i~iwd~~~ 227 (319)
T 3frx_A 166 -SVTIISAGNDKMVKAWNLNQFQIEADFIGH----------NSNINTL---TASPDG----TLIASAGKDGEIMLWNLAA 227 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTTEEEEEECCC----------CSCEEEE---EECTTS----SEEEEEETTCEEEEEETTT
T ss_pred -ccEEEEEeCCCEEEEEECCcchhheeecCC----------CCcEEEE---EEcCCC----CEEEEEeCCCeEEEEECCC
Confidence 124556677899999999988766555421 1222222 344432 3688999999999999987
Q ss_pred CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee----eecCCCCeEEEEECCCCcEEEEE
Q 016769 250 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE----INLERPGISGTSIRPDSKIAATA 325 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~----~~~~~~~i~~~~~~p~~~~l~s~ 325 (383)
. ..+..+.. ..+|.+++|+|++..+++++ ++.+++|+++.......+... ...+...+.+++|+|||++|++|
T Consensus 228 ~-~~~~~~~~-~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg 304 (319)
T 3frx_A 228 K-KAMYTLSA-QDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304 (319)
T ss_dssp T-EEEEEEEC-CSCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEE
T ss_pred C-cEEEEecC-CCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEe
Confidence 4 44555554 46899999999988776665 556999998753211111111 11234568899999999999999
Q ss_pred eCCCcEEEEEcCCC
Q 016769 326 GWDRRVRIYNYRKG 339 (383)
Q Consensus 326 ~~dg~i~iwd~~~~ 339 (383)
+.||+|++||+.++
T Consensus 305 ~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 305 YTDNVIRVWQVMTA 318 (319)
T ss_dssp ETTSCEEEEEEEEC
T ss_pred ecCceEEEEEEeec
Confidence 99999999999654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.7e-30 Score=242.76 Aligned_cols=328 Identities=10% Similarity=0.140 Sum_probs=196.4
Q ss_pred ecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccc-----------cccccccccc----------ceeeeeeecCCC
Q 016769 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-----------VSSSWVHSAA----------HGIVSVATGPSI 74 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~-----------~~~~~~~~~~----------~~~~~~~~~~~~ 74 (383)
.|.+.|++|+|+|+|++||+|+.||.|+|||+.+++. ...+..|... ..+.++.+.+..
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3689999999999999999999999999999876652 3333334311 458889999852
Q ss_pred CcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCccc-c----cCcc
Q 016769 75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV-D----TDSL 149 (383)
Q Consensus 75 ~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~ 149 (383)
+...|++++.|++|++||+.++..... ...+........ . ... .. ............. . ....
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~-~~~~~~~~g~~~--~----~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPE-GYNLKEEDGRYR--D----PTT----VT-TLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEE-CCSCC--------------CCC----CC-SCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CcceEEEeCCCCeEEEEecccccCCcc-eecccCcccccc--C----ccc----cc-ceEeccccchheeeeccceEEec
Confidence 226899999999999999975421000 000000000000 0 000 00 0000000000000 0 0000
Q ss_pred ccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCC-eeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCC
Q 016769 150 CDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ 228 (383)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 228 (383)
..+.. ......+.+++. ++++ | .|+.|++||+++.. .+..+.... . ....+...+.++ .|.|..
T Consensus 174 ~~h~~----~v~~~~~~~~~~-~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~--~-~~~~~~~~v~~~---~~~p~~-- 238 (447)
T 3dw8_B 174 NAHTY----HINSISINSDYE-TYLS-A-DDLRINLWHLEITDRSFNIVDIKP--A-NMEELTEVITAA---EFHPNS-- 238 (447)
T ss_dssp SCCSS----CCCEEEECTTSS-EEEE-E-CSSEEEEEETTEEEEEEEEEECCC--S-SGGGCCCCEEEE---EECSSC--
T ss_pred cCCCc----ceEEEEEcCCCC-EEEE-e-CCCeEEEEECCCCCceeeeeeccc--c-cccccCcceEEE---EECCCC--
Confidence 00000 011122334443 4444 5 58999999998543 333221000 0 000112222222 355532
Q ss_pred CceEEEEEeCCCcEEEEeCCCCCC---ceeeeecccc------------CeEEEEEeCCCCceEEEEcCCcEEEEEccC-
Q 016769 229 GFVNVLAGYEDGSILVWDIRNPGI---PLTAMKVHLE------------PVLCLSIDESCNGGISGGADQKIVLYNLDH- 292 (383)
Q Consensus 229 ~~~~~~sg~~dg~i~~wdl~~~~~---~~~~~~~h~~------------~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~- 292 (383)
...+++|+.||+|++||+++... ....+..|.. +|.++.|++++..+++++. +.|++||+..
T Consensus 239 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~ 316 (447)
T 3dw8_B 239 -CNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME 316 (447)
T ss_dssp -TTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC
T ss_pred -CcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC
Confidence 13688999999999999987543 1466777776 8999999999999999888 9999999975
Q ss_pred CCCeeEEeeeeecCCC---------------CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecc----------
Q 016769 293 STGSCVIKKEINLERP---------------GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY---------- 347 (383)
Q Consensus 293 ~~~~~~~~~~~~~~~~---------------~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------- 347 (383)
...... ...+.. .+..++|+|++++|++|+.||+|++||+.+++.+. +.+
T Consensus 317 ~~~~~~----~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~ 391 (447)
T 3dw8_B 317 NRPVET----YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTV 391 (447)
T ss_dssp SSCSCC----EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCB
T ss_pred ccccce----eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccc
Confidence 322111 112211 13348999999999999999999999999887653 222
Q ss_pred -----------------------cccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 348 -----------------------HHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 348 -----------------------h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
+...|.+++|+|++++||+++.|+ +++|..
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 392 LKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 345688999999999999999886 777764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.5e-31 Score=253.07 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=122.7
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEE--EEeCCC-CceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL--SIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
.+++|+.||+|++||++++..+...+..|..+|.++ .+.+++ ..+++++.|++|+|||++.......+.. .....
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~--~~~~~ 356 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS--RFRGS 356 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE--ECSCC
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc--ccccC
Confidence 488999999999999987655666788999999999 457776 6789999999999999975432222211 11112
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.+.+++|+|+++.+++++.|++|++||++++..+.++.+|...|.+|+|||+|++||+|+.|++|++||+.
T Consensus 357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 357 NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp SCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred cccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 47889999999999999999999999999998888888999999999999999999999999999999974
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=261.21 Aligned_cols=260 Identities=18% Similarity=0.217 Sum_probs=191.0
Q ss_pred eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCc--ccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
+.++.||++.|++++|+|++++|++|+.||+|+|||+. +.+....+..|. ..+.++.+++..+++.+++++.|++|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~--~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCS--SCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCc--CceEEEEecCCCCCCEEEEEeCCCeE
Confidence 46789999999999999999999999999999999987 334444444443 46888998874336889999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++||+.++... .+ ..+
T Consensus 80 ~vwd~~~~~~~-----~~---------~~~-------------------------------------------------- 95 (753)
T 3jro_A 80 LIWKEENGRWS-----QI---------AVH-------------------------------------------------- 95 (753)
T ss_dssp EEEEEETTEEE-----EE---------EEE--------------------------------------------------
T ss_pred EEEECCCCccc-----cc---------ccc--------------------------------------------------
Confidence 99998764200 00 000
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
.+ ..+.| .++ .+.|.. ....+++|+.||+|++||++
T Consensus 96 -------~~-h~~~V-------------------------------~~v---~~sp~~--~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 96 -------AV-HSASV-------------------------------NSV---QWAPHE--YGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp -------CC-CSSCE-------------------------------EEE---EECCGG--GCSEEEEEETTSEEEEEECC
T ss_pred -------cC-CCCCe-------------------------------EEE---EECCCC--CCCEEEEEeCCCcEEEEEee
Confidence 00 00000 000 111110 01147788899999999988
Q ss_pred CCC-CceeeeeccccCeEEEEEeC-------------CCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEE
Q 016769 249 NPG-IPLTAMKVHLEPVLCLSIDE-------------SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 314 (383)
Q Consensus 249 ~~~-~~~~~~~~h~~~v~~~~~~~-------------~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~ 314 (383)
+.. .....+..|..+|.++.|++ ++..+++|+.|+.|++||+............+..+...|.+++
T Consensus 132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (753)
T 3jro_A 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (753)
T ss_dssp SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE
Confidence 652 23345677889999999988 4778999999999999999876554444445566778899999
Q ss_pred ECCC---CcEEEEEeCCCcEEEEEcCCCc-----eEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 315 IRPD---SKIAATAGWDRRVRIYNYRKGS-----ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 315 ~~p~---~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
|+|+ ++++++++.||+|++||+.+++ .......|...|.+++|+|+|++|++|+.||.|++|++..
T Consensus 212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 212 WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred eccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9999 8999999999999999998864 3334456889999999999999999999999999999863
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=225.70 Aligned_cols=240 Identities=20% Similarity=0.312 Sum_probs=177.0
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..+.++.+++ ++..|++++.|++|++||+.++... ..+..+..
T Consensus 56 ~~v~~~~~s~--d~~~l~s~s~Dg~v~iWd~~~~~~~----~~~~~~~~------------------------------- 98 (340)
T 1got_B 56 AKIYAMHWGT--DSRLLLSASQDGKLIIWDSYTTNKV----HAIPLRSS------------------------------- 98 (340)
T ss_dssp SCEEEEEECT--TSSEEEEEETTTEEEEEETTTCCEE----EEEECSSS-------------------------------
T ss_pred CceEEEEECC--CCCEEEEEeCCCcEEEEECCCCCcc----eEeecCCc-------------------------------
Confidence 4688899988 4689999999999999999776321 11100000
Q ss_pred ccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCe----eeEeccCcCCCCCCcCCCCCceeeE
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMA 218 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~----~~~~~~~~~~~s~~~~~~~~~~~~~ 218 (383)
......+++++. ++ ++|+.|+.+++||+.+... ...+.. +.+...+..
T Consensus 99 ----------------~v~~~~~s~~~~-~l-~s~~~d~~v~iw~~~~~~~~~~~~~~~~~----------h~~~v~~~~ 150 (340)
T 1got_B 99 ----------------WVMTCAYAPSGN-YV-ACGGLDNICSIYNLKTREGNVRVSRELAG----------HTGYLSCCR 150 (340)
T ss_dssp ----------------CEEEEEECTTSS-EE-EEEETTCEEEEEETTTCSBSCEEEEEEEC----------CSSCEEEEE
T ss_pred ----------------cEEEEEECCCCC-EE-EEEeCCCeEEEEECccCCCcceeEEEecC----------CCccEEEEE
Confidence 000012234443 44 4556789999999987542 112211 112222222
Q ss_pred EEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeE
Q 016769 219 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV 298 (383)
Q Consensus 219 ~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~ 298 (383)
|.+.+ .+++++.|++|++||+++. ..+..+.+|..+|.++.|++++..+++|+.|+.|++||+......
T Consensus 151 ---~~~~~-----~l~s~s~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~-- 219 (340)
T 1got_B 151 ---FLDDN-----QIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-- 219 (340)
T ss_dssp ---EEETT-----EEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE--
T ss_pred ---ECCCC-----cEEEEECCCcEEEEECCCC-cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeE--
Confidence 33321 4889999999999999874 456778899999999999999999999999999999999754322
Q ss_pred EeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecc--cccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 016769 299 IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVALW 376 (383)
Q Consensus 299 ~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~v~~spd~~~las~s~d~~i~~w 376 (383)
..+..+...|.+++|+|++++|++|+.|++|++||+++++.+..+.. +...|.+++|+|+|++|++|+.|+.|++|
T Consensus 220 --~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vw 297 (340)
T 1got_B 220 --QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297 (340)
T ss_dssp --EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred --EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEE
Confidence 23445667899999999999999999999999999999888776642 33479999999999999999999999999
Q ss_pred eCCC
Q 016769 377 ELYP 380 (383)
Q Consensus 377 ~~~~ 380 (383)
|+..
T Consensus 298 d~~~ 301 (340)
T 1got_B 298 DALK 301 (340)
T ss_dssp ETTT
T ss_pred Eccc
Confidence 9854
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=234.34 Aligned_cols=273 Identities=19% Similarity=0.278 Sum_probs=186.6
Q ss_pred CCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEE
Q 016769 38 TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS 117 (383)
Q Consensus 38 ~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (383)
.+..+..|+.....+...+..|. ..+.+++|+| ++.+|+|++.|++|++||+.+++.. ..+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~l~gH~--~~V~~~~~sp--~~~~l~s~s~D~~v~iWd~~~~~~~----~~~~---------- 105 (380)
T 3iz6_a 44 QGRTAVSFNPTDLVCCRTLQGHS--GKVYSLDWTP--EKNWIVSASQDGRLIVWNALTSQKT----HAIK---------- 105 (380)
T ss_dssp HGGGCCCCCCCCCEEEEEECCCS--SCEEEEEECT--TSSCEEEEETTSEEEEEETTTTEEE----EEEE----------
T ss_pred ccccccccccceeEEeecccccc--cEEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCccc----eEEe----------
Confidence 34455667776666655665554 4688999998 4689999999999999999776311 0000
Q ss_pred eeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEe
Q 016769 118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 197 (383)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~ 197 (383)
.... . .....+.+++. + +++|+.|+.+++||+.+.......
T Consensus 106 ---~h~~---------~-------------------------v~~~~~s~~g~-~-las~~~d~~v~iw~~~~~~~~~~~ 146 (380)
T 3iz6_a 106 ---LHCP---------W-------------------------VMECAFAPNGQ-S-VACGGLDSACSIFNLSSQADRDGN 146 (380)
T ss_dssp ---CCCT---------T-------------------------CCCCEECTTSS-E-EEECCSSSCCEEEECCCCSSCCCS
T ss_pred ---cCCC---------C-------------------------EEEEEECCCCC-E-EEEeeCCCcEEEEECCCCccccCC
Confidence 0000 0 00012334443 3 455677899999999764311000
Q ss_pred ccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeee-----eccccCeEEEEEeC-
Q 016769 198 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-----KVHLEPVLCLSIDE- 271 (383)
Q Consensus 198 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~-----~~h~~~v~~~~~~~- 271 (383)
.........+.+...+. .|.|.. ...+++|+.|++|++||++++. .+..+ .+|...|.++.+.+
T Consensus 147 ---~~~~~~~~gh~~~v~~~---~~~~~~---~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~ 216 (380)
T 3iz6_a 147 ---MPVSRVLTGHKGYASSC---QYVPDQ---ETRLITGSGDQTCVLWDVTTGQ-RISIFGSEFPSGHTADVLSLSINSL 216 (380)
T ss_dssp ---STTCCBCCCCSSCCCCC---BCCSSS---SSCEEEECTTSCEEEECTTTCC-EEEEECCCSSSSCCSCEEEEEECSS
T ss_pred ---ccceeeccCCCcceEEE---EEecCC---CCEEEEECCCCcEEEEEcCCCc-EEEEeecccCCCCccCeEEEEeecC
Confidence 00000000111111111 233321 1248899999999999998754 34434 57889999999976
Q ss_pred CCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEeccccc-
Q 016769 272 SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA- 350 (383)
Q Consensus 272 ~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~- 350 (383)
++..+++|+.|+.|++||++..... ...+..+...|++++|+|++++|++|+.|++|++||+++++.+..+..+..
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~---~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~ 293 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRA---VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR 293 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCC---CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS
T ss_pred CCCEEEEEECCCeEEEEECCCCCcc---eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc
Confidence 6678899999999999999743211 123445677899999999999999999999999999999998887765432
Q ss_pred ------ceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 351 ------TCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 351 ------~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
.|.+++|+|+|++|++|+.||.|++||+..
T Consensus 294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329 (380)
T ss_dssp SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred cccccCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence 489999999999999999999999999753
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=224.41 Aligned_cols=261 Identities=15% Similarity=0.228 Sum_probs=174.8
Q ss_pred eeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccc--cccccccccccceeeeeeecCCCCcceeEecccCCeEEEe
Q 016769 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (383)
Q Consensus 14 l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~W 91 (383)
..+|.+.|++++|+|++++|++|+.|+++++|+..... ++..+..|. ..+.+++++| +++.|++++.|++|++|
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~--~~v~~v~~sp--~~~~l~s~s~D~~v~iw 132 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE--NEVKSVAWAP--SGNLLATCSRDKSVWVW 132 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSCEEEE
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC--CCceEEEEeC--CCCEEEEEECCCeEEEE
Confidence 36999999999999999999999999999999986543 334444443 4688999998 46899999999999999
Q ss_pred ecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCc
Q 016769 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPK 171 (383)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (383)
|+.++... ..+ ....... ..+ ....+.+++.
T Consensus 133 d~~~~~~~----~~~----------~~~~~h~---------~~v-------------------------~~~~~~p~~~- 163 (345)
T 3fm0_A 133 EVDEEDEY----ECV----------SVLNSHT---------QDV-------------------------KHVVWHPSQE- 163 (345)
T ss_dssp EECTTSCE----EEE----------EEECCCC---------SCE-------------------------EEEEECSSSS-
T ss_pred ECCCCCCe----EEE----------EEecCcC---------CCe-------------------------EEEEECCCCC-
Confidence 99765310 000 0000000 000 0011233433
Q ss_pred eeeeccCCcceEEEEecCCCCee--eEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 172 YMAVAGEQLSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
++++++.|++|++||++++... ..+.. +...+.++ .|.|+. ..+++|+.|++|++||+..
T Consensus 164 -~l~s~s~d~~i~~w~~~~~~~~~~~~~~~----------h~~~v~~l---~~sp~g----~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 164 -LLASASYDDTVKLYREEEDDWVCCATLEG----------HESTVWSL---AFDPSG----QRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp -CEEEEETTSCEEEEEEETTEEEEEEEECC----------CSSCEEEE---EECTTS----SEEEEEETTSCEEEEEEEC
T ss_pred -EEEEEeCCCcEEEEEecCCCEEEEEEecC----------CCCceEEE---EECCCC----CEEEEEeCCCeEEEecccc
Confidence 3455677899999999877532 33322 11222222 355542 3688999999999999743
Q ss_pred CCC--------------ceeeee-ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCe----eEEee-eeecCCCC
Q 016769 250 PGI--------------PLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS----CVIKK-EINLERPG 309 (383)
Q Consensus 250 ~~~--------------~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~----~~~~~-~~~~~~~~ 309 (383)
+.. ++..+. .|...|.+++|++.+..+++++.|+.|++|+++..... ..+.. ....|...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~ 305 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD 305 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC
T ss_pred CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc
Confidence 221 112233 37889999999999999999999999999998753211 11111 12356778
Q ss_pred eEEEEECCCC-cEEEEEeCCCcEEEEEcCCCceEEEe
Q 016769 310 ISGTSIRPDS-KIAATAGWDRRVRIYNYRKGSALAIL 345 (383)
Q Consensus 310 i~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~ 345 (383)
|++++|+|++ .+||+++.||+|++|++.+++.+...
T Consensus 306 V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 306 VNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred EeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 9999999997 59999999999999999888766443
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-29 Score=225.19 Aligned_cols=259 Identities=18% Similarity=0.211 Sum_probs=165.1
Q ss_pred Ceeee-ee-cCCceeeEEEeCCCCeEEEecCCCeEEEeeCccc-------ccccccccccccceeeeeeecCCCCcceeE
Q 016769 10 PVAVL-RG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (383)
Q Consensus 10 ~~~~l-~g-H~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (383)
...++ .+ |.+.|++|+|+|++++|++|+.|++|+|||.... +++..+..|. ..+.+++|+| ++.+|+
T Consensus 48 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~sp--~g~~la 123 (330)
T 2hes_X 48 LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE--NEVKGVAWSN--DGYYLA 123 (330)
T ss_dssp EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC------CEEEEEECT--TSCEEE
T ss_pred EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC--CcEEEEEECC--CCCEEE
Confidence 34455 44 9999999999999999999999999999998532 1222333333 4588899998 468999
Q ss_pred ecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccc
Q 016769 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFE 160 (383)
Q Consensus 81 s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
+++.|++|++||+.+..... ..+. . ..... .. .
T Consensus 124 s~s~D~~v~iwd~~~~~~~~---~~~~---------~-~~~h~---------~~-------------------------v 156 (330)
T 2hes_X 124 TCSRDKSVWIWETDESGEEY---ECIS---------V-LQEHS---------QD-------------------------V 156 (330)
T ss_dssp EEETTSCEEEEECCTTCCCC---EEEE---------E-ECCCS---------SC-------------------------E
T ss_pred EEeCCCEEEEEeccCCCCCe---EEEE---------E-eccCC---------Cc-------------------------e
Confidence 99999999999995331100 0000 0 00000 00 0
Q ss_pred eecccCCCCCceeeeccCCcceEEEEecCCC--CeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeC
Q 016769 161 IIDDVPAEGPKYMAVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 238 (383)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~ 238 (383)
....+.+++. ++++++.|++|++||+.++ +++..+..+ ...+.++ .|.|.. ....+++|+.
T Consensus 157 ~~v~~~p~~~--~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h----------~~~v~~~---~~~~~~--~~~~l~s~s~ 219 (330)
T 2hes_X 157 KHVIWHPSEA--LLASSSYDDTVRIWKDYDDDWECVAVLNGH----------EGTVWSS---DFDKTE--GVFRLCSGSD 219 (330)
T ss_dssp EEEEECSSSS--EEEEEETTSCEEEEEEETTEEEEEEEECCC----------SSCEEEE---EECCSS--SSCEEEEEET
T ss_pred EEEEECCCCC--EEEEEcCCCeEEEEECCCCCeeEEEEccCC----------CCcEEEE---EecCCC--CeeEEEEEeC
Confidence 0011233333 3456677899999999776 344444321 1222222 344432 1235889999
Q ss_pred CCcEEEEeCCCCC-------Cceeeeec-cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC-C
Q 016769 239 DGSILVWDIRNPG-------IPLTAMKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP-G 309 (383)
Q Consensus 239 dg~i~~wdl~~~~-------~~~~~~~~-h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~-~ 309 (383)
|++|++||++... .....+.. |..+|.+++|++.+ .+++++.|+.|++||........ .......+.. .
T Consensus 220 D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~h~~~~ 297 (330)
T 2hes_X 220 DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKV-FAKRALCHGVYE 297 (330)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEE-EEEESCTTTTSC
T ss_pred CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEE-Eeccccccccce
Confidence 9999999986531 12233333 88999999998654 78999999999999986432111 1122234444 7
Q ss_pred eEEEEECC--CCcEEEEEeCCCcEEEEEcCC
Q 016769 310 ISGTSIRP--DSKIAATAGWDRRVRIYNYRK 338 (383)
Q Consensus 310 i~~~~~~p--~~~~l~s~~~dg~i~iwd~~~ 338 (383)
+++++|+| ++++||+|+.||+|++||+++
T Consensus 298 v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 298 INVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999999 788999999999999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-29 Score=227.51 Aligned_cols=265 Identities=18% Similarity=0.242 Sum_probs=174.5
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
+..++.+|...|++++|+|++.+|+||+.|++|++||+.+++++..+..|. ..+.+++++| +++.|++++.|++|+
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~--~~v~~v~~sp--~~~~l~s~~~d~~i~ 143 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ--SEVYSVAFSP--DNRQILSAGAEREIK 143 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCC--SCEEEEEECS--STTEEEEEETTSCEE
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC--CcEEEEEECC--CCCEEEEEcCCCEEE
Confidence 456789999999999999999999999999999999998887776655554 4688899998 468899999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+||+..... ........|. ..+....+... ... .....+.+
T Consensus 144 ~wd~~~~~~-----~~~~~~~~~~-------------------~~v~~~~~~~~------~~~---------~~~~~~~~ 184 (343)
T 2xzm_R 144 LWNILGECK-----FSSAEKENHS-------------------DWVSCVRYSPI------MKS---------ANKVQPFA 184 (343)
T ss_dssp EEESSSCEE-----EECCTTTSCS-------------------SCEEEEEECCC------CCS---------CSCCCSSC
T ss_pred EEeccCCce-----eeeecccCCC-------------------ceeeeeeeccc------ccc---------ccccCCCC
Confidence 999863210 0000000000 00000000000 000 00011112
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
. ++++++.|+.|++||.. .+....+..+ ...+.++ .|.|+. ..+++|+.|++|++||++.
T Consensus 185 -~-~l~s~~~d~~i~iwd~~-~~~~~~~~~h----------~~~v~~~---~~s~~g----~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 185 -P-YFASVGWDGRLKVWNTN-FQIRYTFKAH----------ESNVNHL---SISPNG----KYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp -C-EEEEEETTSEEEEEETT-TEEEEEEECC----------SSCEEEE---EECTTS----SEEEEEETTCEEEEEESSC
T ss_pred -C-EEEEEcCCCEEEEEcCC-CceeEEEcCc----------cccceEE---EECCCC----CEEEEEcCCCeEEEEECCC
Confidence 2 34556778999999943 3333333321 1122222 355542 3688999999999999965
Q ss_pred CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee---------eecCCCCeEEEEECCCCc
Q 016769 250 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE---------INLERPGISGTSIRPDSK 320 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~---------~~~~~~~i~~~~~~p~~~ 320 (383)
...+...+. +...|.+++|++++.. ++++.|+.|++||+............ ...+...+.+++|+|+++
T Consensus 245 ~~~~~~~~~-~~~~v~~v~~sp~~~~-la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 245 LTYPQREFD-AGSTINQIAFNPKLQW-VAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp CSSCSEEEE-CSSCEEEEEECSSSCE-EEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred Ccccceeec-CCCcEEEEEECCCCCE-EEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 444444332 4567999999998765 45667889999999765432211111 113456799999999999
Q ss_pred EEEEEeCCCcEEEEEcCCC
Q 016769 321 IAATAGWDRRVRIYNYRKG 339 (383)
Q Consensus 321 ~l~s~~~dg~i~iwd~~~~ 339 (383)
+|++|+.||+|++|+++++
T Consensus 323 ~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CEEEEETTSEEEEEEEEEE
T ss_pred eEEEecCCceEEEEEEEcc
Confidence 9999999999999998654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-28 Score=226.67 Aligned_cols=250 Identities=23% Similarity=0.344 Sum_probs=176.0
Q ss_pred CceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCC
Q 016769 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (383)
Q Consensus 19 ~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~ 98 (383)
..|++++|+|++++|++|+.|++|+|||+.+++.+..+..|. ..+.++++.+ ++..|++++.|++|++||+++++.
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE--QDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCC--CCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCee
Confidence 359999999999999999999999999998877766655554 4588899988 468899999999999999987632
Q ss_pred CCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccC
Q 016769 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGE 178 (383)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 178 (383)
. ..+.. .. . .....+.+...++ +++|+
T Consensus 200 ~----~~~~~-------------~~----------~-------------------------v~~~~~~~~~~~~-l~~~s 226 (393)
T 1erj_A 200 S----LTLSI-------------ED----------G-------------------------VTTVAVSPGDGKY-IAAGS 226 (393)
T ss_dssp E----EEEEC-------------SS----------C-------------------------EEEEEECSTTCCE-EEEEE
T ss_pred E----EEEEc-------------CC----------C-------------------------cEEEEEECCCCCE-EEEEc
Confidence 1 00000 00 0 0001122322233 45567
Q ss_pred CcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC-------
Q 016769 179 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG------- 251 (383)
Q Consensus 179 ~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~------- 251 (383)
.|++|++||+++++.+..+...... ...+...+.++ .|.++. ..+++|+.|++|++||+++..
T Consensus 227 ~d~~v~iwd~~~~~~~~~~~~~~~~---~~~h~~~v~~v---~~~~~g----~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 227 LDRAVRVWDSETGFLVERLDSENES---GTGHKDSVYSV---VFTRDG----QSVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp TTSCEEEEETTTCCEEEEEC---------CCCSSCEEEE---EECTTS----SEEEEEETTSEEEEEEC-----------
T ss_pred CCCcEEEEECCCCcEEEeecccccC---CCCCCCCEEEE---EECCCC----CEEEEEeCCCEEEEEECCCCCCcccccC
Confidence 7899999999998877665421100 01112222222 344432 368899999999999997532
Q ss_pred ----CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC------CCcE
Q 016769 252 ----IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP------DSKI 321 (383)
Q Consensus 252 ----~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p------~~~~ 321 (383)
.+...+.+|...|.++.+++++..+++++.|+.|++||+.... .. ..+..|...|.+++|+| ++++
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~--~~--~~l~~h~~~v~~v~~~~~~~~~p~~~~ 372 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN--PL--LMLQGHRNSVISVAVANGSSLGPEYNV 372 (393)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC--EE--EEEECCSSCEEEEEECSSCTTCTTCEE
T ss_pred CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe--EE--EEECCCCCCEEEEEecCCcCcCCCCCE
Confidence 2234567899999999999999999999999999999987543 22 23456778899999875 6889
Q ss_pred EEEEeCCCcEEEEEcCCC
Q 016769 322 AATAGWDRRVRIYNYRKG 339 (383)
Q Consensus 322 l~s~~~dg~i~iwd~~~~ 339 (383)
|++|+.||+|++|++...
T Consensus 373 l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 373 FATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEETTSEEEEEEEEEC
T ss_pred EEEECCCCcEEECccccc
Confidence 999999999999998543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-27 Score=220.40 Aligned_cols=241 Identities=19% Similarity=0.357 Sum_probs=175.1
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..+.+++|++ ++.+|+|++.|++|++||..++... ..+. .+..
T Consensus 65 ~~V~~~~~s~--d~~~l~s~s~Dg~v~vWd~~~~~~~----~~~~-------------~~~~------------------ 107 (354)
T 2pbi_B 65 NKVLCMDWCK--DKRRIVSSSQDGKVIVWDSFTTNKE----HAVT-------------MPCT------------------ 107 (354)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEE----EEEE-------------CSSS------------------
T ss_pred CeEEEEEECC--CCCEEEEEeCCCeEEEEECCCCCcc----eEEe-------------cCCC------------------
Confidence 4588999998 4689999999999999998765310 0000 0000
Q ss_pred ccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCe------eeEeccCcCCCCCCcCCCCCcee
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER------CTRLHQNSCGGSPNFSSKGRGMC 216 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~------~~~~~~~~~~~s~~~~~~~~~~~ 216 (383)
......+++++. .+++|+.|+.+++|++..... ...+.. +.....+
T Consensus 108 ----------------~v~~~~~sp~g~--~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~----------h~~~v~~ 159 (354)
T 2pbi_B 108 ----------------WVMACAYAPSGC--AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM----------HTNYLSA 159 (354)
T ss_dssp ----------------CCCEEEECTTSS--EEEEESTTSEEEEEECCCCTTCCSGGGCEEEEE----------CSSCEEE
T ss_pred ----------------CEEEEEECCCCC--EEEEeeCCCCEEEEEEeccccccccccceeeec----------cCCcEEE
Confidence 000112334443 345567789999999865421 111111 1111112
Q ss_pred eEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeC--CCCceEEEEcCCcEEEEEccCCC
Q 016769 217 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE--SCNGGISGGADQKIVLYNLDHST 294 (383)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~i~~wdl~~~~ 294 (383)
..|.+.. ..+++++.|++|++||+++. ..+..+.+|...|.++.+.+ ++..+++|+.|+.|++||++...
T Consensus 160 ---~~~~~~~----~~l~t~s~D~~v~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~ 231 (354)
T 2pbi_B 160 ---CSFTNSD----MQILTASGDGTCALWDVESG-QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ 231 (354)
T ss_dssp ---EEECSSS----SEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC
T ss_pred ---EEEeCCC----CEEEEEeCCCcEEEEeCCCC-eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 2344432 25889999999999999874 45778889999999999976 45689999999999999997643
Q ss_pred CeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEeccc--ccceeEEEEeCCCCEEEEEeCCCc
Q 016769 295 GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH--HATCNAVSFSSDCKLMASASEDST 372 (383)
Q Consensus 295 ~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~v~~spd~~~las~s~d~~ 372 (383)
+. ..+..+...|++++|+|++++|++++.|++|++||++.++.+..+..+ ...+.+++|+|++++|++|+.|+.
T Consensus 232 --~~--~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~ 307 (354)
T 2pbi_B 232 --CV--QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT 307 (354)
T ss_dssp --EE--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred --EE--EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc
Confidence 22 234556778999999999999999999999999999988877766543 347899999999999999999999
Q ss_pred EEEEeCCC
Q 016769 373 VALWELYP 380 (383)
Q Consensus 373 i~~w~~~~ 380 (383)
|++||+..
T Consensus 308 i~vwd~~~ 315 (354)
T 2pbi_B 308 INVWDVLK 315 (354)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
Confidence 99999853
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-28 Score=226.53 Aligned_cols=258 Identities=20% Similarity=0.299 Sum_probs=190.5
Q ss_pred eeeeecCCceeeEEEeCC-CCeEEEecCCCeEEEeeCcc----------cccccccccccccceeeeeeecCCCCcceeE
Q 016769 12 AVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ----------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~-~~~L~sgs~D~~v~vW~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (383)
..+.+|.+.|++++|+|+ +.+|++|+.||.|++|++.. .+.+..+..|. ..+.++++.+. +...|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~-~~~~l~ 198 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ--KEGYGLSWNPN-LNGYLL 198 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS--SCCCCEEECTT-STTEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC--CCeEEEEeCCC-CCCeEE
Confidence 467899999999999997 68999999999999999876 23333333333 45778888884 223899
Q ss_pred ecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccc
Q 016769 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFE 160 (383)
Q Consensus 81 s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
+++.|++|++||+.++..... .+ . .
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~---~~----------~----~-------------------------------------- 223 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHR---VI----------D----A-------------------------------------- 223 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGG---EE----------E----C--------------------------------------
T ss_pred EEeCCCeEEEEeCCCCCCCCc---ee----------c----c--------------------------------------
Confidence 999999999999976421000 00 0 0
Q ss_pred eecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC
Q 016769 161 IIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 240 (383)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg 240 (383)
.... .+ ..+.| .++ .+.|.. ...+++++.|+
T Consensus 224 ----------~~~~-~~-h~~~v-------------------------------~~v---~~~p~~---~~~l~s~~~dg 254 (430)
T 2xyi_A 224 ----------KNIF-TG-HTAVV-------------------------------EDV---AWHLLH---ESLFGSVADDQ 254 (430)
T ss_dssp ----------SEEE-CC-CSSCE-------------------------------EEE---EECSSC---TTEEEEEETTS
T ss_pred ----------ceee-cC-CCCCE-------------------------------eee---EEeCCC---CCEEEEEeCCC
Confidence 0000 00 00000 000 122211 12477899999
Q ss_pred cEEEEeCCCCC--CceeeeeccccCeEEEEEeCCCCc-eEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC
Q 016769 241 SILVWDIRNPG--IPLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 317 (383)
Q Consensus 241 ~i~~wdl~~~~--~~~~~~~~h~~~v~~~~~~~~~~~-~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p 317 (383)
.|++||+++.. .++..+..|..+|.++.|++.+.. +++|+.|+.|++||++...... ..+..+...+.+++|+|
T Consensus 255 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~---~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 255 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL---HSFESHKDEIFQVQWSP 331 (430)
T ss_dssp EEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS---EEEECCSSCEEEEEECS
T ss_pred eEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCe---EEeecCCCCEEEEEECC
Confidence 99999998753 456667789999999999998874 7899999999999998633211 22344667899999999
Q ss_pred CCc-EEEEEeCCCcEEEEEcCC--------------CceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 318 DSK-IAATAGWDRRVRIYNYRK--------------GSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 318 ~~~-~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
+++ +|++++.|++|++||+.. .+.+..+.+|...|.+++|+|+++ +|++++.|+.|++|++.
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 985 699999999999999976 366778889999999999999999 99999999999999974
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-28 Score=221.07 Aligned_cols=143 Identities=10% Similarity=0.061 Sum_probs=113.2
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeee-eccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeec-CCCC
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-ERPG 309 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~-~~~~ 309 (383)
.+++|+.||+|++||+++... +... ..|...+.+++|++++..+++|+.|+.|++||++...... ..+.. |...
T Consensus 141 ~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~---~~~~~~h~~~ 216 (343)
T 3lrv_A 141 YFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS---SRFPVDEEAK 216 (343)
T ss_dssp EEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC---EECCCCTTSC
T ss_pred EEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc---cEEeccCCCC
Confidence 588899999999999987543 4333 3455689999999999999999999999999998654320 12333 6688
Q ss_pred eEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecc---ccccee--EEEEeCCCCEEEEEeC-CCcEEEEeCC
Q 016769 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY---HHATCN--AVSFSSDCKLMASASE-DSTVALWELY 379 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~--~v~~spd~~~las~s~-d~~i~~w~~~ 379 (383)
|.+++|+|++++|++++ |++|++||+++++.+..+.. |...+. +++|+|+|++|++++. |+.|++|++.
T Consensus 217 v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 217 IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 99999999999999999 55999999998876554443 445554 5999999999999999 9999999884
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-27 Score=239.32 Aligned_cols=295 Identities=17% Similarity=0.207 Sum_probs=209.2
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
+.+.++.+|.+.|++++|+|++++|++|+.||.|+|||..+++.+..+..|. ..+.++++++ ++..+++++.|++|
T Consensus 46 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--~~v~~~~~s~--~~~~l~~~~~dg~i 121 (814)
T 3mkq_A 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP--DYIRSIAVHP--TKPYVLSGSDDLTV 121 (814)
T ss_dssp EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS--SSSEEEEEETTSEE
T ss_pred ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC--CCEEEEEEeC--CCCEEEEEcCCCEE
Confidence 4567889999999999999999999999999999999998887776654443 4588899998 46789999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++||++++... ...+..+.. .+. ...+.+.
T Consensus 122 ~vw~~~~~~~~---~~~~~~~~~----------------------~v~-------------------------~~~~~p~ 151 (814)
T 3mkq_A 122 KLWNWENNWAL---EQTFEGHEH----------------------FVM-------------------------CVAFNPK 151 (814)
T ss_dssp EEEEGGGTSEE---EEEEECCSS----------------------CEE-------------------------EEEEETT
T ss_pred EEEECCCCceE---EEEEcCCCC----------------------cEE-------------------------EEEEEcC
Confidence 99999765210 000000000 000 0011221
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
+.. ++++++.+++|++||++++.....+.... .....++ .+.|.. +...+++++.||.|++||++
T Consensus 152 ~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~---------~~~v~~~---~~~~~~--~~~~l~~~~~dg~i~~~d~~ 216 (814)
T 3mkq_A 152 DPS-TFASGCLDRTVKVWSLGQSTPNFTLTTGQ---------ERGVNYV---DYYPLP--DKPYMITASDDLTIKIWDYQ 216 (814)
T ss_dssp EEE-EEEEEETTSEEEEEETTCSSCSEEEECCC---------TTCCCEE---EECCST--TCCEEEEECTTSEEEEEETT
T ss_pred CCC-EEEEEeCCCeEEEEECCCCcceeEEecCC---------CCCEEEE---EEEECC--CCCEEEEEeCCCEEEEEECC
Confidence 122 34456678999999998877655554211 0111122 244421 12368899999999999998
Q ss_pred CCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCc--EEEEEe
Q 016769 249 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK--IAATAG 326 (383)
Q Consensus 249 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~--~l~s~~ 326 (383)
+. .....+..|..+|.++.|++++..+++++.|+.|++||+..... ......+...+.+++|+|+++ ++++ +
T Consensus 217 ~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~-~ 290 (814)
T 3mkq_A 217 TK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV----EKTLNVGLERSWCIATHPTGRKNYIAS-G 290 (814)
T ss_dssp TT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE----EEEECCSSSSEEEEEECTTCGGGEEEE-E
T ss_pred CC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----EEEeecCCCcEEEEEEccCCCceEEEE-E
Confidence 74 45677888999999999999999999999999999999875432 123344557899999999987 4554 4
Q ss_pred CCCcEEEEEcCCCce----------EE---------------------------------EecccccceeEEEEeCCCCE
Q 016769 327 WDRRVRIYNYRKGSA----------LA---------------------------------ILKYHHATCNAVSFSSDCKL 363 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~----------~~---------------------------------~~~~h~~~v~~v~~spd~~~ 363 (383)
.|+.+.+|++..... +. .+..|...+.+++|+|||++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 370 (814)
T 3mkq_A 291 FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRF 370 (814)
T ss_dssp ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSE
T ss_pred eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCE
Confidence 577788898754321 11 11234456789999999999
Q ss_pred EEEEeCCCcEEEEeCC
Q 016769 364 MASASEDSTVALWELY 379 (383)
Q Consensus 364 las~s~d~~i~~w~~~ 379 (383)
|++++ |+.+.+|++.
T Consensus 371 la~~~-~~~~~i~~~~ 385 (814)
T 3mkq_A 371 VTVVG-DGEYVIYTAL 385 (814)
T ss_dssp EEEEE-TTEEEEEETT
T ss_pred EEEec-CCEEEEEECc
Confidence 99988 8899999874
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-27 Score=214.18 Aligned_cols=257 Identities=20% Similarity=0.276 Sum_probs=175.8
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
+..++++|.+.|++++|+|++++|++|+.|+.|++|+............+ ........+.+ .+..+++++.|+.++
T Consensus 78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~l~s~s~d~~~~ 153 (340)
T 4aow_A 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH--TKDVLSVAFSS--DNRQIVSGSRDKTIK 153 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEECT--TSSCEEEEETTSCEE
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCC--CCceeEEEEee--cCccceeecCCCeEE
Confidence 56789999999999999999999999999999999998776554433222 22344555555 357899999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+||+..... ... ....| ... .....+...+
T Consensus 154 ~~d~~~~~~-----~~~-~~~~~-------------------~~~-------------------------v~~~~~~~~~ 183 (340)
T 4aow_A 154 LWNTLGVCK-----YTV-QDESH-------------------SEW-------------------------VSCVRFSPNS 183 (340)
T ss_dssp EECTTSCEE-----EEE-CSSSC-------------------SSC-------------------------EEEEEECSCS
T ss_pred EEEeCCCce-----EEE-Eeccc-------------------cCc-------------------------ccceEEccCC
Confidence 999865321 000 00000 000 0001112222
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
...++++++.|+.|++||+++++.+..+..+ ...+.++ .|.|+. ..+++|+.|++|++||+++
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h----------~~~v~~~---~~s~~~----~~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGH----------TGYLNTV---TVSPDG----SLCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCC----------SSCEEEE---EECTTS----SEEEEEETTCEEEEEETTT
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCC----------CCcEEEE---EECCCC----CEEEEEeCCCeEEEEEecc
Confidence 2335566777899999999998877666431 1222222 244432 3688999999999999987
Q ss_pred CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEee-----eeecCCCCeEEEEECCCCcEEEE
Q 016769 250 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK-----EINLERPGISGTSIRPDSKIAAT 324 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~-----~~~~~~~~i~~~~~~p~~~~l~s 324 (383)
. .++..+.. ...+.++.+++++ .+++++.|+.|++||++.......+.. ....+...|++++|+|++++|++
T Consensus 247 ~-~~~~~~~~-~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 247 G-KHLYTLDG-GDIINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp T-EEEEEEEC-SSCEEEEEECSSS-SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred C-ceeeeecC-CceEEeeecCCCC-ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 4 34555553 4689999998875 567788899999999875432221111 12345678999999999999999
Q ss_pred EeCCCcEEEEEcCCCc
Q 016769 325 AGWDRRVRIYNYRKGS 340 (383)
Q Consensus 325 ~~~dg~i~iwd~~~~~ 340 (383)
|+.||+|++||+.+|+
T Consensus 324 gs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 324 GYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTSCEEEEEEEC--
T ss_pred EeCCCEEEEEeCCCcC
Confidence 9999999999999876
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-26 Score=208.86 Aligned_cols=243 Identities=21% Similarity=0.339 Sum_probs=178.2
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..+.++++++ ++++|++++.|++|++|++.+++... .+..+. ..+
T Consensus 24 ~~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~~~~~~----~~~~h~----------------------~~v------- 68 (312)
T 4ery_A 24 KAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEK----TISGHK----------------------LGI------- 68 (312)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEE----EECCCS----------------------SCE-------
T ss_pred CcEEEEEECC--CCCEEEEeeCCCeEEEEeCCCcccch----hhccCC----------------------Cce-------
Confidence 4688899998 46889999999999999997663210 000000 000
Q ss_pred ccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEee
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 222 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 222 (383)
....+.+++. + +++++.|+.|++||+++++.+..+..+ ...+.++ .+
T Consensus 69 ------------------~~~~~~~~~~-~-l~s~~~d~~i~vwd~~~~~~~~~~~~~----------~~~v~~~---~~ 115 (312)
T 4ery_A 69 ------------------SDVAWSSDSN-L-LVSASDDKTLKIWDVSSGKCLKTLKGH----------SNYVFCC---NF 115 (312)
T ss_dssp ------------------EEEEECTTSS-E-EEEEETTSEEEEEETTTCCEEEEEECC----------SSCEEEE---EE
T ss_pred ------------------EEEEEcCCCC-E-EEEECCCCEEEEEECCCCcEEEEEcCC----------CCCEEEE---EE
Confidence 0011233443 3 445667899999999998877766532 1222232 24
Q ss_pred cCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee
Q 016769 223 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE 302 (383)
Q Consensus 223 ~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~ 302 (383)
.|.. ..+++|+.|++|++||+++. ..+..+..|..+|.++.|++++..+++++.|+.|++||+....... ..
T Consensus 116 ~~~~----~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~---~~ 187 (312)
T 4ery_A 116 NPQS----NLIVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK---TL 187 (312)
T ss_dssp CSSS----SEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EE
T ss_pred cCCC----CEEEEEeCCCcEEEEECCCC-EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee---EE
Confidence 4432 36889999999999999874 4567788899999999999999999999999999999997543211 12
Q ss_pred eecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeE--EEEe-CCCCEEEEEeCCCcEEEEeCC
Q 016769 303 INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNA--VSFS-SDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 303 ~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~--v~~s-pd~~~las~s~d~~i~~w~~~ 379 (383)
...+...+..++|+|++++|++++.|+.|++||+.+++.+..+.+|...+.+ ..|+ +++++|++|+.|+.|++||+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp CCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 2234457899999999999999999999999999999999999888765432 3444 678899999999999999986
Q ss_pred CC
Q 016769 380 PP 381 (383)
Q Consensus 380 ~~ 381 (383)
..
T Consensus 268 ~~ 269 (312)
T 4ery_A 268 TK 269 (312)
T ss_dssp TC
T ss_pred Cc
Confidence 43
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-27 Score=209.58 Aligned_cols=182 Identities=11% Similarity=0.047 Sum_probs=123.8
Q ss_pred CCcceEEEEec-CCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceee
Q 016769 178 EQLSEVEIWDL-NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 256 (383)
Q Consensus 178 ~~~~~i~~Wdl-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~ 256 (383)
..++.|++|++ .+++.+..+.. +++....++ |.+.. .....+++|+.|++|+|||++++ ..+.+
T Consensus 154 g~d~~V~~~~~s~dG~~~~s~~~--------~~~~v~~l~-----fs~~~-g~~~~LaSgS~D~TIkIWDl~TG-k~l~t 218 (356)
T 2w18_A 154 LSDQQVEVMTFAEDGGGKENQFL--------MPPEETILT-----FAEVQ-GMQEALLGTTIMNNIVIWNLKTG-QLLKK 218 (356)
T ss_dssp STTCEEEEEEECTTSCEEEEEEE--------CCCSSCEEE-----EEEEE-TSTTEEEEEETTSEEEEEETTTC-CEEEE
T ss_pred CCCCcEEEEEECCCCceeeeecc--------CCCceeeEE-----eeccC-CCCceEEEecCCCcEEEEECCCC-cEEEE
Confidence 35789999999 44665554432 122222222 32210 11236889999999999999984 45677
Q ss_pred eeccc---cCeEEEEEeCCCCce------------EEEEcCCcEEEEEccCCCCeeEEeeee---ecCCCCeEEEEECCC
Q 016769 257 MKVHL---EPVLCLSIDESCNGG------------ISGGADQKIVLYNLDHSTGSCVIKKEI---NLERPGISGTSIRPD 318 (383)
Q Consensus 257 ~~~h~---~~v~~~~~~~~~~~~------------~s~~~d~~i~~wdl~~~~~~~~~~~~~---~~~~~~i~~~~~~p~ 318 (383)
++.|. ..+.+++|+|++..+ ++|+.|++|++||.+.. ........ ..+...+.+. +.+
T Consensus 219 L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg--k~l~v~~~~~p~Gh~~~~lsg--~~s 294 (356)
T 2w18_A 219 MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT--LSVGVMLYCLPPGQAGRFLEG--DVK 294 (356)
T ss_dssp EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT--EEEEEEEECCCTTCCCCEEEE--EEE
T ss_pred EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC--EEEEEEEeeccCCCcceeEcc--ccC
Confidence 77543 467778898888765 56888999999998643 33221111 1222223222 233
Q ss_pred CcEEEEEeCCCcEEEEEcCCCceEEEeccccccee-EEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 319 SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN-AVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 319 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
+.++|+++.|++|+|||+.+++.+.++.+|...+. +++|||||++||||+.|++|||||+
T Consensus 295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 67899999999999999999999999999988765 5899999999999999999999996
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-28 Score=227.13 Aligned_cols=272 Identities=11% Similarity=0.097 Sum_probs=186.3
Q ss_pred eeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeec
Q 016769 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (383)
Q Consensus 14 l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~ 93 (383)
-++-...|.+|+|+|||++|||+|.|++|+ |....+++ ..|. ..+..++|+|. + .|+++++|+.
T Consensus 11 ~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~--~~v~~V~FsPd--g-------~~~~~~~~~~ 74 (588)
T 2j04_A 11 RKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNS--KNLFHVKEFPL--E-------FENKLDFELA 74 (588)
T ss_dssp SCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBG--GGTEEEEEECC--C-------CCCTTTTSCC
T ss_pred HhHhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCC--ccEEEEEECCC--C-------CcceEEEEeC
Confidence 346678999999999999999999999999 75444433 3343 46888999983 2 4555555543
Q ss_pred CCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCcee
Q 016769 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYM 173 (383)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (383)
+...... +.. . .......++++|. .
T Consensus 75 ~~~~~~~-----~~~-----------------------~-------------------------~~V~~vawSPdG~-~- 99 (588)
T 2j04_A 75 QQNGLLN-----SQP-----------------------V-------------------------CYPRVCKPSPIDD-W- 99 (588)
T ss_dssp CSSCSST-----TSC-----------------------S-------------------------CCEEEEEECSSSS-C-
T ss_pred CCceEee-----cCC-----------------------C-------------------------CcEEEEEECCCCC-E-
Confidence 3211100 000 0 0011123456665 3
Q ss_pred eeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC-
Q 016769 174 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI- 252 (383)
Q Consensus 174 ~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~- 252 (383)
+++++.+++|++||.+. ++..+. +.. .-....+.+ ..|.|++ ..+++|+.||+|++||+.....
T Consensus 100 LAs~s~dg~V~iwd~~~--~l~~l~-~~~-----~~~~~sv~s---vafSPDG----~~LAsgs~DGtVkIWd~~~~~l~ 164 (588)
T 2j04_A 100 MAVLSNNGNVSVFKDNK--MLTNLD-SKG-----NLSSRTYHC---FEWNPIE----SSIVVGNEDGELQFFSIRKNSEN 164 (588)
T ss_dssp EEEEETTSCEEEEETTE--EEEECC-CSS-----CSTTTCEEE---EEECSSS----SCEEEEETTSEEEEEECCCCTTT
T ss_pred EEEEeCCCcEEEEeCCc--eeeecc-CCC-----ccccccEEE---EEEcCCC----CEEEEEcCCCEEEEEECCCCccc
Confidence 34556789999999544 344333 110 000011222 2466653 3589999999999999987532
Q ss_pred -----ceeee----eccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeee-ecCCCCeEEEEECCCCcEE
Q 016769 253 -----PLTAM----KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI-NLERPGISGTSIRPDSKIA 322 (383)
Q Consensus 253 -----~~~~~----~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~l 322 (383)
.+..+ .+|..+|.+++|+|++ +++++.|+++++||++........ ..+ ..+...|.+++|+ ++++
T Consensus 165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~-~tL~~~h~~~V~svaFs--g~~L 239 (588)
T 2j04_A 165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVS-RMIQNASRRKITDLKIV--DYKV 239 (588)
T ss_dssp CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCE-EEEECCCSSCCCCEEEE--TTEE
T ss_pred cccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccce-eeecccccCcEEEEEEE--CCEE
Confidence 24555 5677899999999998 889999999999999765421100 112 2455789999999 5889
Q ss_pred EEEeCCCcEEEEEcCCCceEEEecccccceeEEEE--eCCCCEEEEEeCCCcEEEEeC
Q 016769 323 ATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSF--SSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 323 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~--spd~~~las~s~d~~i~~w~~ 378 (383)
|+++ +++|++||+..++......+|...|..++| +||++.|+++++||+ ++|.+
T Consensus 240 ASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 240 VLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred EEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 9887 799999999887764434379999999999 999999999999999 99987
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=216.97 Aligned_cols=264 Identities=19% Similarity=0.260 Sum_probs=175.9
Q ss_pred eeecCCceeeEEEeCC---CCeEEEecCCCeEEEeeCcccc-cccccccccccceeeeee------ecCCCCcceeEecc
Q 016769 14 LRGHRASVTDVCFHQT---KPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVA------TGPSIGLNKVISQG 83 (383)
Q Consensus 14 l~gH~~~V~~v~f~~~---~~~L~sgs~D~~v~vW~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~s~~ 83 (383)
..+|.+.|++++|+|+ +++|++|+.|+.|++||+.+++ .+..+..|. ..+.++. +++ +++.|++++
T Consensus 61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~s~--~~~~l~~~~ 136 (357)
T 3i2n_A 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHK--EIINAIDGIGGLGIGE--GAPEIVTGS 136 (357)
T ss_dssp EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCS--SCEEEEEEESGGGCC---CCCEEEEEE
T ss_pred eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecc--cceEEEeeccccccCC--CccEEEEEe
Confidence 3489999999999998 6999999999999999998776 555544443 3456664 344 467899999
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
.|++|++||+.++... ...+.....+ ....+.. ..+..
T Consensus 137 ~d~~i~vwd~~~~~~~---~~~~~~~~~~------------------~~~~v~~---------------------~~~~~ 174 (357)
T 3i2n_A 137 RDGTVKVWDPRQKDDP---VANMEPVQGE------------------NKRDCWT---------------------VAFGN 174 (357)
T ss_dssp TTSCEEEECTTSCSSC---SEEECCCTTS------------------CCCCEEE---------------------EEEEC
T ss_pred CCCeEEEEeCCCCCCc---ceeccccCCC------------------CCCceEE---------------------EEEEe
Confidence 9999999999876411 1111000000 0000000 00001
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
.+.+++. + +++++.++.|++||+++++....... .....++ .+.|... ....+++|+.||.|+
T Consensus 175 ~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~-----------~~~v~~~---~~~~~~~-~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 175 AYNQEER-V-VCAGYDNGDIKLFDLRNMALRWETNI-----------KNGVCSL---EFDRKDI-SMNKLVATSLEGKFH 237 (357)
T ss_dssp CCC-CCC-E-EEEEETTSEEEEEETTTTEEEEEEEC-----------SSCEEEE---EESCSSS-SCCEEEEEESTTEEE
T ss_pred ccCCCCC-E-EEEEccCCeEEEEECccCceeeecCC-----------CCceEEE---EcCCCCC-CCCEEEEECCCCeEE
Confidence 1223333 3 44556689999999999876443321 1122222 2444110 123588899999999
Q ss_pred EEeCCCCCCceee-----eeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCee---------------EEeee
Q 016769 244 VWDIRNPGIPLTA-----MKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSC---------------VIKKE 302 (383)
Q Consensus 244 ~wdl~~~~~~~~~-----~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~---------------~~~~~ 302 (383)
+||+++... ... +..|..+|.++.|++++. .+++++.|+.|++||++...... .....
T Consensus 238 i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (357)
T 3i2n_A 238 VFDMRTQHP-TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN 316 (357)
T ss_dssp EEEEEEEET-TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred EEeCcCCCc-ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence 999976332 222 348999999999999888 78999999999999997543321 22234
Q ss_pred eecCCCCeEEEEECCCCcEEE-EEeCCCcEEEEEcCCCce
Q 016769 303 INLERPGISGTSIRPDSKIAA-TAGWDRRVRIYNYRKGSA 341 (383)
Q Consensus 303 ~~~~~~~i~~~~~~p~~~~l~-s~~~dg~i~iwd~~~~~~ 341 (383)
...+...|.+++|+|++++|+ +++.|++|++||+.+.+.
T Consensus 317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 556778899999999999988 899999999999987653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-27 Score=234.75 Aligned_cols=256 Identities=18% Similarity=0.263 Sum_probs=175.3
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
+...+.+|...|++++|+|++++|+|||.|++|+|||+.++++...+..|. ..+.++++++ +++.|+|++.|++|+
T Consensus 422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~--~~v~~~~~s~--~~~~l~s~s~D~~i~ 497 (694)
T 3dm0_A 422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHT--KDVLSVAFSL--DNRQIVSASRDRTIK 497 (694)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECT--TSSCEEEEETTSCEE
T ss_pred ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCC--CCEEEEEEeC--CCCEEEEEeCCCEEE
Confidence 345789999999999999999999999999999999998887766655554 4588899998 468899999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+||..... ... +..... .+.. ......+++++
T Consensus 498 iwd~~~~~-----~~~------------~~~~~~-------~h~~------------------------~v~~~~~~~~~ 529 (694)
T 3dm0_A 498 LWNTLGEC-----KYT------------ISEGGE-------GHRD------------------------WVSCVRFSPNT 529 (694)
T ss_dssp EECTTSCE-----EEE------------ECSSTT-------SCSS------------------------CEEEEEECSCS
T ss_pred EEECCCCc-----cee------------eccCCC-------CCCC------------------------cEEEEEEeCCC
Confidence 99975321 000 000000 0000 00001122333
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
...++++++.|++|++||+++.+....+..+ .+.+.++ .+.|+. ..+++|+.||+|++||+++
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h----------~~~v~~v---~~spdg----~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGH----------TGYVSTV---AVSPDG----SLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCC----------SSCEEEE---EECTTS----SEEEEEETTSBCEEEETTT
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCC----------CCCEEEE---EEeCCC----CEEEEEeCCCeEEEEECCC
Confidence 2234566778899999999998876666432 1222222 344432 3688999999999999987
Q ss_pred CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee---------------cCCCCeEEEE
Q 016769 250 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN---------------LERPGISGTS 314 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~---------------~~~~~i~~~~ 314 (383)
.. .+..+. +...+.++.|++++..+ +++.|+.|++||++.......+..... .+...+++++
T Consensus 593 ~~-~~~~~~-~~~~v~~~~~sp~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 669 (694)
T 3dm0_A 593 GK-KLYSLE-ANSVIHALCFSPNRYWL-CAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN 669 (694)
T ss_dssp TE-EEECCB-CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEE
T ss_pred Cc-eEEEec-CCCcEEEEEEcCCCcEE-EEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEE
Confidence 43 344444 34679999999987654 455677899999976432222111000 0111368899
Q ss_pred ECCCCcEEEEEeCCCcEEEEEcC
Q 016769 315 IRPDSKIAATAGWDRRVRIYNYR 337 (383)
Q Consensus 315 ~~p~~~~l~s~~~dg~i~iwd~~ 337 (383)
|+|++++|++|+.||+|++||+.
T Consensus 670 ~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 670 WSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcCCCCEEEEEcCCCeEEEEecc
Confidence 99999999999999999999985
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-28 Score=227.48 Aligned_cols=303 Identities=15% Similarity=0.178 Sum_probs=193.7
Q ss_pred CCCCCeeeeeecCCceeeE----------EEeCCCCeEEEecCCCeEEEeeCccccccccc-ccccccceeeeeeecCCC
Q 016769 6 PPPDPVAVLRGHRASVTDV----------CFHQTKPILFAGTTGGELRIWDTVQHRTVSSS-WVHSAAHGIVSVATGPSI 74 (383)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~v----------~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 74 (383)
||-+...++..|..-+..+ .|+|+++.+++++ .|+. +++.+..+ ..|. ..+.++++++.
T Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~f~~~~~~~~~~~------~w~~-~g~~~~~~~~~h~--~~V~~~~~s~~- 74 (437)
T 3gre_A 5 HHHHGEGDVESIEKFLSTFKILPPLRDYKEFGPIQEIVRSPN------MGNL-RGKLIATLMENEP--NSITSSAVSPG- 74 (437)
T ss_dssp ---------CCCGGGTTCC-CCCCGGGCGGGCCCCCCCCCCC------GGGC-CCCEEEEECTTTT--SCEEEEEEECS-
T ss_pred ccccCCCChhHHHHHhccCCCCCChhchhhcCCccccccccc------cccc-cceEEeeeccCCC--CceEEEEECCC-
Confidence 4444445556665555544 3567777777765 4884 45555554 3333 46889999882
Q ss_pred CcceeEecccCCeEEEeecCC---CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCcccc
Q 016769 75 GLNKVISQGRDGTVKCWDIEN---GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD 151 (383)
Q Consensus 75 ~~~~l~s~~~D~ti~~Wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (383)
++..|++++.|++|++||+.+ +.... ...... + . ..
T Consensus 75 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~-h----------~------------~~----------------- 113 (437)
T 3gre_A 75 ETPYLITGSDQGVIKIWNLKEIIVGEVYS-SSLTYD-C----------S------------ST----------------- 113 (437)
T ss_dssp SSCEEEEEETTSEEEEEEHHHHHTTCCCS-CSEEEE-C----------S------------SC-----------------
T ss_pred CCCEEEEecCCceEEEeECcccccCcccc-eeeecc-C----------C------------CC-----------------
Confidence 257899999999999999875 32100 000000 0 0 00
Q ss_pred ccccCCccceecccCCCCCceeeeccCCcceEEEEecC---CCCeeeEeccCcCCCCCCcC---CCCCceeeEEEeecCC
Q 016769 152 SKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLN---TAERCTRLHQNSCGGSPNFS---SKGRGMCMAVQAYLPS 225 (383)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~---~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~ 225 (383)
.....+.+++ .+ +++++.|++|++||++ +++.+..+... ......+. ......++... +.+
T Consensus 114 --------v~~~~~~~~~-~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~-~~~- 180 (437)
T 3gre_A 114 --------VTQITMIPNF-DA-FAVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRKINLKNFGKNEYAVRMRAF-VNE- 180 (437)
T ss_dssp --------EEEEEECTTS-SE-EEEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEEEEGGGGSSCCCEEEEEEE-ECS-
T ss_pred --------EEEEEEeCCC-CE-EEEEeCCCEEEEEEeccccCCceeeccccc-eeEEEEccCcccccCceEEEEE-EcC-
Confidence 0001122333 23 4456678999999995 44443322211 00001111 11222222211 112
Q ss_pred CCCCceEEEEEeCCCcEEEEeCCCCCCceeeeec--cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeee
Q 016769 226 KSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV--HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI 303 (383)
Q Consensus 226 ~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~ 303 (383)
+...+++|+.|+.|++||+++. .++..+.. |..+|.+++|++++..+++++.|+.|++||++.. .... .+
T Consensus 181 ---~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~--~~ 252 (437)
T 3gre_A 181 ---EKSLLVALTNLSRVIIFDIRTL-ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN--VLIR--SW 252 (437)
T ss_dssp ---SCEEEEEEETTSEEEEEETTTC-CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT--EEEE--EE
T ss_pred ---CCCEEEEEeCCCeEEEEeCCCC-eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc--cEEE--EE
Confidence 2346889999999999999874 45667777 8899999999999999999999999999999753 2222 22
Q ss_pred e-cCCCCeEEEEE----CCCCcEEEEEeCCCcEEEEEcCCCceEEEecc--------------------------cccce
Q 016769 304 N-LERPGISGTSI----RPDSKIAATAGWDRRVRIYNYRKGSALAILKY--------------------------HHATC 352 (383)
Q Consensus 304 ~-~~~~~i~~~~~----~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------------------h~~~v 352 (383)
. .+...|.++++ +|++++|++++.|++|++||+.+++.+..+.+ |...|
T Consensus 253 ~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 332 (437)
T 3gre_A 253 SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNAL 332 (437)
T ss_dssp BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGG
T ss_pred ecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCce
Confidence 2 34457899954 56788999999999999999999987776654 55668
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 353 NAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 353 ~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
.+++|+ ++++|++|+.|+.|++||+..+
T Consensus 333 ~~l~~~-~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 333 STISVS-NDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp CCEEEE-TTEEEEEEGGGTEEEEEETTCG
T ss_pred EEEEEC-CceEEEecCCCCeEEEEECCCc
Confidence 889999 7799999999999999998654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-26 Score=217.88 Aligned_cols=267 Identities=18% Similarity=0.230 Sum_probs=171.5
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEee
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd 92 (383)
.+.+|.+.|++|+|+|+|++|++|+.|++|+|||+.+++++.....|. ..+.++++. +..+++++.|+++++||
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~--~~v~~~s~~----~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLSWN----SYILSSGSRSGHIHHHD 215 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEE----TTEEEEEETTSEEEEEE
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCC--CceEEEeeC----CCEEEEEeCCCceeEee
Confidence 345888999999999999999999999999999999888776665554 335555543 47899999999999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
....... ...+..+... .......+.+. +
T Consensus 216 ~~~~~~~---~~~~~~h~~~-----------------------------------------------~~~~~~~~~g~-~ 244 (420)
T 4gga_A 216 VRVAEHH---VATLSGHSQE-----------------------------------------------VCGLRWAPDGR-H 244 (420)
T ss_dssp TTSSSCE---EEEEECCSSC-----------------------------------------------EEEEEECTTSS-E
T ss_pred eccccee---eEEecccccc-----------------------------------------------eeeeeecCCCC-e
Confidence 8654210 0000000000 00011223332 3
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
+++++.|+.+++||+.+++........ .......+.++ .+.|.... ...+.+|+.|++|++||++++ .
T Consensus 245 -l~s~~~D~~v~i~~~~~~~~~~~~~~~------~~~~~~~V~~~---~~~p~~~~-~la~~~gs~D~~I~iwd~~t~-~ 312 (420)
T 4gga_A 245 -LASGGNDNLVNVWPSAPGEGGWVPLQT------FTQHQGAVKAV---AWCPWQSN-VLATGGGTSDRHIRIWNVCSG-A 312 (420)
T ss_dssp -EEEEETTSCEEEEESSCCSSCSCCSEE------ECCCSSCEEEE---EECTTCTT-EEEEEECTTTCEEEEEETTTT-E
T ss_pred -eeeeeccccceEEeeccccccceeeee------ecccCCceeee---eeCCCccc-EEEEEeecCCCEEEEEeCCcc-c
Confidence 445667899999999876532111000 00111122222 34443221 111224578999999999874 3
Q ss_pred ceeeeeccccCeEEEEEeCCCCceEEEE--cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCc
Q 016769 253 PLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 330 (383)
Q Consensus 253 ~~~~~~~h~~~v~~~~~~~~~~~~~s~~--~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~ 330 (383)
....+.. ...+.++.+.+.+..+++++ .|+.|++||+.... .. ..+..|...|.+++|+||+++|++|+.|++
T Consensus 313 ~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~--~v--~~l~gH~~~V~~l~~spdg~~l~S~s~D~t 387 (420)
T 4gga_A 313 CLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--KV--AELKGHTSRVLSLTMSPDGATVASAAADET 387 (420)
T ss_dssp EEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--EE--EEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred cceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc--EE--EEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 4455544 35788899999988887765 68999999997543 22 345567889999999999999999999999
Q ss_pred EEEEEcCCCceEEEeccccccee
Q 016769 331 VRIYNYRKGSALAILKYHHATCN 353 (383)
Q Consensus 331 i~iwd~~~~~~~~~~~~h~~~v~ 353 (383)
|++||+....+......+...+.
T Consensus 388 vriWdv~~~~~~~~~~~~~~~~~ 410 (420)
T 4gga_A 388 LRLWRCFELDPARRREREKASAA 410 (420)
T ss_dssp EEEECCSCSSCC-----------
T ss_pred EEEEECCCCCccchhhhccCCcc
Confidence 99999987666555544554443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=221.85 Aligned_cols=253 Identities=15% Similarity=0.236 Sum_probs=180.6
Q ss_pred CCeeeeeecCCceeeEEEeC-CCCeEEEecCCCeEEEeeCcccc-------cccccccccccceeeeeeecCCCCcceeE
Q 016769 9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR-------TVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~-~~~~L~sgs~D~~v~vW~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (383)
..+.++.+|.+.|++++|+| ++++|++|+.||+|+|||+.++. .+..+..|. ..+.++++.++ +.+.|+
T Consensus 72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~p~-~~~~l~ 148 (402)
T 2aq5_A 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT--KRVGIVAWHPT-AQNVLL 148 (402)
T ss_dssp TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS--SCEEEEEECSS-BTTEEE
T ss_pred CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC--CeEEEEEECcC-CCCEEE
Confidence 45667899999999999999 99999999999999999998763 333333333 46788899884 226889
Q ss_pred ecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccc
Q 016769 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFE 160 (383)
Q Consensus 81 s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
+++.|++|++||+++++... .+.
T Consensus 149 s~~~dg~i~iwd~~~~~~~~----------------~~~----------------------------------------- 171 (402)
T 2aq5_A 149 SAGCDNVILVWDVGTGAAVL----------------TLG----------------------------------------- 171 (402)
T ss_dssp EEETTSCEEEEETTTTEEEE----------------EEC-----------------------------------------
T ss_pred EEcCCCEEEEEECCCCCccE----------------EEe-----------------------------------------
Confidence 99999999999987652100 000
Q ss_pred eecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC
Q 016769 161 IIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 240 (383)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg 240 (383)
. .+ ..+.| .++ .+.|+. ..+++++.|+
T Consensus 172 ------~--------~~-~~~~v-------------------------------~~~---~~~~~~----~~l~~~~~d~ 198 (402)
T 2aq5_A 172 ------P--------DV-HPDTI-------------------------------YSV---DWSRDG----ALICTSCRDK 198 (402)
T ss_dssp ------T--------TT-CCSCE-------------------------------EEE---EECTTS----SCEEEEETTS
T ss_pred ------c--------CC-CCCce-------------------------------EEE---EECCCC----CEEEEEecCC
Confidence 0 00 00000 000 122211 1377888999
Q ss_pred cEEEEeCCCCCCceeee-eccccC-eEEEEEeCCCCceEEE---EcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEE
Q 016769 241 SILVWDIRNPGIPLTAM-KVHLEP-VLCLSIDESCNGGISG---GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 315 (383)
Q Consensus 241 ~i~~wdl~~~~~~~~~~-~~h~~~-v~~~~~~~~~~~~~s~---~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (383)
.|++||+++. ..+..+ ..|... +.++.|++++..+++| +.|+.|++||++........ ....+...+..++|
T Consensus 199 ~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 199 RVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSL--QELDTSSGVLLPFF 275 (402)
T ss_dssp EEEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEE--EECCCCSSCEEEEE
T ss_pred cEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceE--EeccCCCceeEEEE
Confidence 9999999874 345555 577665 8899999988877887 68999999999765432211 11123457999999
Q ss_pred CCCCcEEEE-EeCCCcEEEEEcCCCce-EEEecc--cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 316 RPDSKIAAT-AGWDRRVRIYNYRKGSA-LAILKY--HHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 316 ~p~~~~l~s-~~~dg~i~iwd~~~~~~-~~~~~~--h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+|+++++++ ++.|++|++||+.+++. +..+.. |...|.+++|+|++.++++ .|+.+++|++.
T Consensus 276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcC
Confidence 999999865 55799999999998874 444444 4589999999999998875 56799999985
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-27 Score=216.74 Aligned_cols=271 Identities=16% Similarity=0.245 Sum_probs=185.6
Q ss_pred CCCeeeeeecCCceeeEEEeCC----C---CeEEEecCCCeEEEeeCccccc-----ccccccccc---cceeeeeeec-
Q 016769 8 PDPVAVLRGHRASVTDVCFHQT----K---PILFAGTTGGELRIWDTVQHRT-----VSSSWVHSA---AHGIVSVATG- 71 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~----~---~~L~sgs~D~~v~vW~~~~~~~-----~~~~~~~~~---~~~~~~~~~~- 71 (383)
..++..+.+|.+.|++++|+|+ + ++|++++.|+.|++|++.+++. ...+..|.. ...+.++.+.
T Consensus 52 ~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 131 (397)
T 1sq9_A 52 KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 131 (397)
T ss_dssp GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence 3467889999999999999999 9 9999999999999999987765 444444421 2467888888
Q ss_pred ---CCCCcce-eEecccCCeEEEeecCC------CCCCCC-CeeeeecCceeeeeEEeeccccccccccCCCCccceecc
Q 016769 72 ---PSIGLNK-VISQGRDGTVKCWDIEN------GGLSSN-PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV 140 (383)
Q Consensus 72 ---~~~~~~~-l~s~~~D~ti~~Wd~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (383)
+ ++.. |++++.|++|++||+.+ +....- +...+.. . .... .
T Consensus 132 ~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~------~----------- 183 (397)
T 1sq9_A 132 SNDR--LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG--------T-VESP------M----------- 183 (397)
T ss_dssp CC------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEE--------E-ECCS------S-----------
T ss_pred ccCC--CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeee--------e-eccc------c-----------
Confidence 6 4677 99999999999999976 322110 0000000 0 0000 0
Q ss_pred CcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCc-CCCCCceeeEE
Q 016769 141 GETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF-SSKGRGMCMAV 219 (383)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~ 219 (383)
.... ......+.+++ ++++++.++.|++||+++++.+..+.... .+ .......++
T Consensus 184 ----------~~~~----~i~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~h~~~~~~i~~i-- 239 (397)
T 1sq9_A 184 ----------TPSQ----FATSVDISERG---LIATGFNNGTVQISELSTLRPLYNFESQH-----SMINNSNSIRSV-- 239 (397)
T ss_dssp ----------SSCC----CCCEEEECTTS---EEEEECTTSEEEEEETTTTEEEEEEECCC--------CCCCCEEEE--
T ss_pred ----------CCCC----CceEEEECCCc---eEEEEeCCCcEEEEECCCCceeEEEeccc-----cccccCCccceE--
Confidence 0000 00011233444 44556778999999999988776664300 00 001222222
Q ss_pred EeecCCCCCCceEEEEEeCC---CcEEEEeCCCCCCceeeeec-------------cccCeEEEEEeCCCCceEEEEcCC
Q 016769 220 QAYLPSKSQGFVNVLAGYED---GSILVWDIRNPGIPLTAMKV-------------HLEPVLCLSIDESCNGGISGGADQ 283 (383)
Q Consensus 220 ~~~~~~~~~~~~~~~sg~~d---g~i~~wdl~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~~s~~~d~ 283 (383)
.+.|+. ..+++++.| +.|++||+++. .++..+.. |..+|.++.|++++..+++++.|+
T Consensus 240 -~~~~~~----~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 313 (397)
T 1sq9_A 240 -KFSPQG----SLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 313 (397)
T ss_dssp -EECSST----TEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred -EECCCC----CEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence 244432 258889999 99999999874 45667777 999999999999999999999999
Q ss_pred cEEEEEccCCCCeeEEeeeee------cC---------------CCCeEEEEECCCC----------cEEEEEeCCCcEE
Q 016769 284 KIVLYNLDHSTGSCVIKKEIN------LE---------------RPGISGTSIRPDS----------KIAATAGWDRRVR 332 (383)
Q Consensus 284 ~i~~wdl~~~~~~~~~~~~~~------~~---------------~~~i~~~~~~p~~----------~~l~s~~~dg~i~ 332 (383)
.|++||+....... .+. .+ ...|.+++|+|++ ++|++++.||.|+
T Consensus 314 ~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 314 KLRFWDVKTKERIT----TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR 389 (397)
T ss_dssp EEEEEETTTTEEEE----EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred eEEEEEcCCCceeE----EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence 99999997543222 222 33 6789999999998 7999999999999
Q ss_pred EEEcCCCc
Q 016769 333 IYNYRKGS 340 (383)
Q Consensus 333 iwd~~~~~ 340 (383)
+||+.+++
T Consensus 390 iw~~~~g~ 397 (397)
T 1sq9_A 390 WFREAGGK 397 (397)
T ss_dssp EEEEEC--
T ss_pred EEEcCCCC
Confidence 99998763
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-25 Score=211.36 Aligned_cols=292 Identities=9% Similarity=0.027 Sum_probs=194.1
Q ss_pred CCceeeEEEeCCCCeEEEecCCCeEEEeeCcccc---ccccccccc----------------------------------
Q 016769 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHS---------------------------------- 60 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~---~~~~~~~~~---------------------------------- 60 (383)
..+|.+|+|+|+|++|+++ .++.|++||+.+++ .+.....+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4688999999999966655 68899999988776 332221110
Q ss_pred ------------------ccceeeeeeecCCCCccee-EecccCCeEEEeecC--CCCCCCCCeeeeecCceeeeeEEee
Q 016769 61 ------------------AAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIE--NGGLSSNPSLTIKTNSYHFCKLSLV 119 (383)
Q Consensus 61 ------------------~~~~~~~~~~~~~~~~~~l-~s~~~D~ti~~Wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (383)
....+.+++++++ +..| ++++.|++|++||+. ++.... .+.. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~dg~v~iwd~~~~~~~~~~----~~~~----------~ 146 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD--ESRLIACADSDKSLLVFDVDKTSKNVLK----LRKR----------F 146 (450)
T ss_dssp -----------------CCCCCEEEEEECTT--SSEEEEEEGGGTEEEEEEECSSSSSCEE----EEEE----------E
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCC--CCEEEEEECCCCeEEEEECcCCCCceee----eeec----------c
Confidence 0014778889884 5675 899999999999997 553211 1100 0
Q ss_pred ccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeee----
Q 016769 120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT---- 195 (383)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~---- 195 (383)
.... . .....+.+++. +++ +++.++.+++|++.+.....
T Consensus 147 ~~~~----------~-------------------------v~~~~~sp~~~-~l~-~~~~~g~v~~~~~~~~~~~~~~~~ 189 (450)
T 2vdu_B 147 CFSK----------R-------------------------PNAISIAEDDT-TVI-IADKFGDVYSIDINSIPEEKFTQE 189 (450)
T ss_dssp ECSS----------C-------------------------EEEEEECTTSS-EEE-EEETTSEEEEEETTSCCCSSCCCC
T ss_pred cCCC----------C-------------------------ceEEEEcCCCC-EEE-EEeCCCcEEEEecCCcccccccce
Confidence 0000 0 00012234443 344 45568999999998766432
Q ss_pred EeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCc
Q 016769 196 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG 275 (383)
Q Consensus 196 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 275 (383)
.+. .+...+.++ .|.|+. .+...+++|+.|++|++||+++.......+.+|..+|.++.|+ ++..
T Consensus 190 ~~~----------~h~~~v~~~---~~sp~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~ 254 (450)
T 2vdu_B 190 PIL----------GHVSMLTDV---HLIKDS-DGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYL 254 (450)
T ss_dssp CSE----------ECSSCEEEE---EEEECT-TSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTE
T ss_pred eee----------cccCceEEE---EEcCCC-CCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCE
Confidence 111 112223333 244430 0124688999999999999987544333366899999999999 8889
Q ss_pred eEEEEcCCcEEEEEccCCCCeeEEeeee---------------------ecCCCCeEEEEECCCCcEEEEEe-CCCcEEE
Q 016769 276 GISGGADQKIVLYNLDHSTGSCVIKKEI---------------------NLERPGISGTSIRPDSKIAATAG-WDRRVRI 333 (383)
Q Consensus 276 ~~s~~~d~~i~~wdl~~~~~~~~~~~~~---------------------~~~~~~i~~~~~~p~~~~l~s~~-~dg~i~i 333 (383)
+++++.|+.|++||+........+.... ......+..++++|+++++++++ .|+.|++
T Consensus 255 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~i 334 (450)
T 2vdu_B 255 LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIII 334 (450)
T ss_dssp EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEE
Confidence 9999999999999997654322221100 01234688999999999999999 8999999
Q ss_pred EEc--CCC---ceEEEecccccceeEEEEeCCCCEEEEEeC------CCcEEEEeCC
Q 016769 334 YNY--RKG---SALAILKYHHATCNAVSFSSDCKLMASASE------DSTVALWELY 379 (383)
Q Consensus 334 wd~--~~~---~~~~~~~~h~~~v~~v~~spd~~~las~s~------d~~i~~w~~~ 379 (383)
||+ ..+ +.+..+..| ..|.+++|+|++.+++.++. +..|++|.+.
T Consensus 335 w~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 335 LEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 999 555 566677777 78999999996544444443 5668999875
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-27 Score=218.38 Aligned_cols=273 Identities=15% Similarity=0.094 Sum_probs=158.3
Q ss_pred eecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccc-----cccccccccceeeeeeecCC------CCcceeEecc
Q 016769 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----SSSWVHSAAHGIVSVATGPS------IGLNKVISQG 83 (383)
Q Consensus 15 ~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~------~~~~~l~s~~ 83 (383)
.+|...+...++++++.+|++|+.|++|||||..++.+. ..+..|. ..|.+++|+|. .+++.|+|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~--~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHH--NFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCS--SCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCC--CceEEEEEccccccccCCCCCEEEEEE
Confidence 345555556667777889999999999999998765432 2233343 45778888752 2457899999
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
.|++||+||+.++.. ......+ ..+ ....
T Consensus 164 ~D~tv~~Wd~~~~~~----~~~~~~~----------~~~-------------------------------------v~~v 192 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGP----ILAGYPL----------SSP-------------------------------------GISV 192 (393)
T ss_dssp TTSEEEEEEEETTEE----EEEEEEC----------SSC-------------------------------------EEEE
T ss_pred CCCeEEEEECCCCce----eeeecCC----------CCC-------------------------------------cEEE
Confidence 999999999976521 0000000 000 0001
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
.+.+++.. ++++++.|++|++||+++++......+... ..... .++...+.
T Consensus 193 ~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~--------~~~~~-----------------~~s~~~~~--- 243 (393)
T 4gq1_A 193 QFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQTEL--------VKNPW-----------------LLTLNTLP--- 243 (393)
T ss_dssp EEETTEEE-EEEEEETTSEEEEEETTCCC------------------CSCCC-----------------SEEEESGG---
T ss_pred EECCCCCc-eEEecCCCCEEEEEECCCCcccccccccCC--------cccce-----------------EEeccccc---
Confidence 22333333 455677889999999998875443322100 00000 01110010
Q ss_pred EEeCCCCCCceeeeeccccCeEEEEEe-CCCCceEEEEcCCcEEEEEccCCCCeeEEee---------------eeecCC
Q 016769 244 VWDIRNPGIPLTAMKVHLEPVLCLSID-ESCNGGISGGADQKIVLYNLDHSTGSCVIKK---------------EINLER 307 (383)
Q Consensus 244 ~wdl~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~---------------~~~~~~ 307 (383)
.........|...+.++.+. +++..+++++.|+++++||+........+.. .....
T Consensus 244 -------~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 315 (393)
T 4gq1_A 244 -------LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF- 315 (393)
T ss_dssp -------GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS-
T ss_pred -------ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc-
Confidence 00112234677888888885 6888899999999999999864322111100 00001
Q ss_pred CCeEEEEECC--CCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 308 PGISGTSIRP--DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 308 ~~i~~~~~~p--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
.......++| ++.++++|+.||+|++||+.+++....+.+|..+|.+++|||||++||+++.|| +.+|.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 1111223333 445778888999999999999998888888999999999999999999999887 555544
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-25 Score=201.44 Aligned_cols=253 Identities=18% Similarity=0.223 Sum_probs=168.9
Q ss_pred eeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeec
Q 016769 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (383)
Q Consensus 14 l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~ 93 (383)
+.+|...|++|+|+|++++|+||+.|++|++||..+++++.....|.. .+.++... +..+++++.++.+++|+.
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~--~~~~~~~~----~~~l~s~~~~~~~~~~~~ 136 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA--RVGSLSWN----SYILSSGSRSGHIHHHDV 136 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEEE----TTEEEEEETTSEEEEEET
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccc--eEEEeecC----CCEEEEEecCCceEeeec
Confidence 457889999999999999999999999999999998887766554432 23344433 468899999999999998
Q ss_pred CCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCcee
Q 016769 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYM 173 (383)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (383)
...... ...+..+.. ......+.+.+. +
T Consensus 137 ~~~~~~---~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~--~ 164 (318)
T 4ggc_A 137 RVAEHH---VATLSGHSQ-----------------------------------------------EVCGLRWAPDGR--H 164 (318)
T ss_dssp TSSSCE---EEEEECCSS-----------------------------------------------CEEEEEECTTSS--E
T ss_pred CCCcee---EEEEcCccC-----------------------------------------------ceEEEEEcCCCC--E
Confidence 654210 000000000 000011122332 3
Q ss_pred eeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCc
Q 016769 174 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 253 (383)
Q Consensus 174 ~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~ 253 (383)
+++++.|++|++||+++++......... ....+...+. .+.+.... ...+.+++.+++|++||.+....
T Consensus 165 l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~v~~~---~~~~~~~~-~~~~~~~~~~~~i~lwd~~~~~~- 233 (318)
T 4ggc_A 165 LASGGNDNLVNVWPSAPGEGGWVPLQTF------TQHQGAVKAV---AWCPWQSN-VLATGGGTSDRHIRIWNVCSGAC- 233 (318)
T ss_dssp EEEEETTSCEEEEESSCBTTBSCCSEEE------CCCCSCEEEE---EECTTSTT-EEEEEECTTTCEEEEEETTTCCE-
T ss_pred EEEEecCcceeEEECCCCcccccceeee------cccCCceEEE---EecCCCCc-EEEEEecCCCCEEEEEecccccc-
Confidence 4456778999999998876422111100 0011111111 23333221 12345678899999999887432
Q ss_pred eeeeeccccCeEEEEEeCCCCceEEEE--cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcE
Q 016769 254 LTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 331 (383)
Q Consensus 254 ~~~~~~h~~~v~~~~~~~~~~~~~s~~--~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i 331 (383)
.....+...+..+.+.+.+..+++++ .|+.|++||++... . ...+..|...|++++|+|++++|++|+.||+|
T Consensus 234 -~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~--~--~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v 308 (318)
T 4ggc_A 234 -LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--K--VAELKGHTSRVLSLTMSPDGATVASAAADETL 308 (318)
T ss_dssp -EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--E--EEEECCCSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred -cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc--E--EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeE
Confidence 33345677899999999888877654 79999999997543 2 23455677899999999999999999999999
Q ss_pred EEEEcCCCc
Q 016769 332 RIYNYRKGS 340 (383)
Q Consensus 332 ~iwd~~~~~ 340 (383)
+|||+.+..
T Consensus 309 ~iWd~~~~d 317 (318)
T 4ggc_A 309 RLWRCFELD 317 (318)
T ss_dssp EEECCSCCC
T ss_pred EEEECCCCC
Confidence 999997654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=214.20 Aligned_cols=260 Identities=13% Similarity=0.183 Sum_probs=175.3
Q ss_pred cCCceeeEEEeCC----CCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEee
Q 016769 17 HRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 17 H~~~V~~v~f~~~----~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd 92 (383)
|.+.|++++|+|+ +++|++|+.||.|++||+.+++.+..+..|. ..+.++.+.+. ++..|++++.|++|++||
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHG--NAINELKFHPR-DPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCC--SCEEEEEECSS-CTTEEEEEETTSCEEEEE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCC--CcEEEEEECCC-CCCEEEEEeCCCeEEEEE
Confidence 5688999999999 6799999999999999998887766654443 46888999873 357899999999999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
+++++.. ..+... ... ... .....+.+++. +
T Consensus 145 ~~~~~~~----~~~~~~----------~~~---------~~~-------------------------v~~~~~~~~~~-~ 175 (366)
T 3k26_A 145 IQTDTLV----AIFGGV----------EGH---------RDE-------------------------VLSADYDLLGE-K 175 (366)
T ss_dssp TTTTEEE----EEECST----------TSC---------SSC-------------------------EEEEEECTTSS-E
T ss_pred eecCeEE----EEeccc----------ccc---------cCc-------------------------eeEEEECCCCC-E
Confidence 9876311 000000 000 000 00011233333 3
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCC------C--------C----CcCCCCCceeeEEEeecCCCCCCceEEE
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG------S--------P----NFSSKGRGMCMAVQAYLPSKSQGFVNVL 234 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~------s--------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (383)
+ ++++.++.|++||+++++....+....... . . ...+...+.++. +. ...++
T Consensus 176 l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~------~~~l~ 245 (366)
T 3k26_A 176 I-MSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR---WL------GDLIL 245 (366)
T ss_dssp E-EEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE---EE------TTEEE
T ss_pred E-EEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE---Ec------CCEEE
Confidence 4 445668999999999876543332100000 0 0 000112222322 21 12588
Q ss_pred EEeCCCcEEEEeCCCCCC-------------ceeeeeccccCeEEEEEeCC--CCceEEEEcCCcEEEEEccCCCCeeEE
Q 016769 235 AGYEDGSILVWDIRNPGI-------------PLTAMKVHLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTGSCVI 299 (383)
Q Consensus 235 sg~~dg~i~~wdl~~~~~-------------~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~i~~wdl~~~~~~~~~ 299 (383)
+++.|+.|++||+++... .+..+..|..+|.++.|+++ +..+++++.|+.|++||++........
T Consensus 246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 325 (366)
T 3k26_A 246 SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK 325 (366)
T ss_dssp EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence 999999999999876432 24566778889999999888 889999999999999999865432212
Q ss_pred eeeeecC--CCCeEEEEECCCCcEEEEEeCCCcEEEEEcCC
Q 016769 300 KKEINLE--RPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 338 (383)
Q Consensus 300 ~~~~~~~--~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~ 338 (383)
...+..+ ...|.+++|+|++++|++++.||+|++||+.+
T Consensus 326 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 326 CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 2233334 57899999999999999999999999999853
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-25 Score=208.85 Aligned_cols=288 Identities=10% Similarity=0.048 Sum_probs=197.7
Q ss_pred eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccccccccc---ccccceeeeeeecCCCCcceeEecccCCe
Q 016769 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV---HSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
+..+..| ..+.+++|+|++.++++++.|+.|++||+.+++....... ..+...+.++++.+ ++..+++++.|++
T Consensus 116 ~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~ 192 (433)
T 3bws_A 116 ISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANA 192 (433)
T ss_dssp EEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTE
T ss_pred EEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCE
Confidence 3344444 4466999999888999999999999999987765532111 11223567778866 4678899999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
|++||+++++.. ..+..+.. ......+.+
T Consensus 193 v~~~d~~~~~~~----~~~~~~~~-----------------------------------------------~~~~~~~~~ 221 (433)
T 3bws_A 193 VHVFDLKTLAYK----ATVDLTGK-----------------------------------------------WSKILLYDP 221 (433)
T ss_dssp EEEEETTTCCEE----EEEECSSS-----------------------------------------------SEEEEEEET
T ss_pred EEEEECCCceEE----EEEcCCCC-----------------------------------------------CeeEEEEcC
Confidence 999999775321 01100000 000011233
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEe--------CC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--------ED 239 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~--------~d 239 (383)
++. .+++++..++.|++||+++++.+..+.... ....+ .+.|+. ..+++++ .|
T Consensus 222 ~~~-~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----------~~~~~---~~~~~g----~~l~~~~~~~~~~~~~d 282 (433)
T 3bws_A 222 IRD-LVYCSNWISEDISVIDRKTKLEIRKTDKIG-----------LPRGL---LLSKDG----KELYIAQFSASNQESGG 282 (433)
T ss_dssp TTT-EEEEEETTTTEEEEEETTTTEEEEECCCCS-----------EEEEE---EECTTS----SEEEEEEEESCTTCSCC
T ss_pred CCC-EEEEEecCCCcEEEEECCCCcEEEEecCCC-----------CceEE---EEcCCC----CEEEEEECCCCccccCC
Confidence 443 455566668899999999887665554211 11111 233432 2455555 58
Q ss_pred CcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCce-EEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCC
Q 016769 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 318 (383)
Q Consensus 240 g~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 318 (383)
+.|++||+++.. .... ..|...+..+.|++++..+ ++++.|+.|++||++... ... .+. ....+.+++|+|+
T Consensus 283 g~i~~~d~~~~~-~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~--~~~--~~~-~~~~~~~~~~s~d 355 (433)
T 3bws_A 283 GRLGIYSMDKEK-LIDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK--VQK--SIP-VFDKPNTIALSPD 355 (433)
T ss_dssp EEEEEEETTTTE-EEEE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE--EEE--EEE-CSSSEEEEEECTT
T ss_pred CeEEEEECCCCc-EEee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc--EEE--Eec-CCCCCCeEEEcCC
Confidence 899999998743 2333 3456688899999998755 566889999999997432 221 222 3457899999999
Q ss_pred CcEEEEEeC---------------CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeC-CCcEEEEeCC
Q 016769 319 SKIAATAGW---------------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE-DSTVALWELY 379 (383)
Q Consensus 319 ~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~-d~~i~~w~~~ 379 (383)
++++++++. ||.|++||+.+++.+..+.. ...+.+++|+|||++|++++. |+.|++|++.
T Consensus 356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 998888887 57999999999998888765 457899999999999888775 9999999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-25 Score=205.30 Aligned_cols=257 Identities=16% Similarity=0.189 Sum_probs=176.4
Q ss_pred eeeeee-cCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 11 VAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 11 ~~~l~g-H~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
...+.. |.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..|. ..+.++.+. +..+++++.|++|+
T Consensus 126 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~----~~~l~~~~~dg~i~ 199 (401)
T 4aez_A 126 SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ--ARVGCLSWN----RHVLSSGSRSGAIH 199 (401)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEEE----TTEEEEEETTSEEE
T ss_pred eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCC--CceEEEEEC----CCEEEEEcCCCCEE
Confidence 344444 89999999999999999999999999999998887766654443 356677774 37899999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+||+..... ....+..+.. . .....+.+++
T Consensus 200 i~d~~~~~~---~~~~~~~~~~----------------------~-------------------------v~~~~~~~~~ 229 (401)
T 4aez_A 200 HHDVRIANH---QIGTLQGHSS----------------------E-------------------------VCGLAWRSDG 229 (401)
T ss_dssp EEETTSSSC---EEEEEECCSS----------------------C-------------------------EEEEEECTTS
T ss_pred EEecccCcc---eeeEEcCCCC----------------------C-------------------------eeEEEEcCCC
Confidence 999974321 0000000000 0 0001122333
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEe--CCCcEEEEeC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWDI 247 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~--~dg~i~~wdl 247 (383)
. + +++++.|+.|++||+++++.+..+..+. ..+.++ .+.|.. ...+++|+ .|+.|++||+
T Consensus 230 ~-~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~----------~~v~~~---~~~p~~---~~ll~~~~gs~d~~i~i~d~ 291 (401)
T 4aez_A 230 L-Q-LASGGNDNVVQIWDARSSIPKFTKTNHN----------AAVKAV---AWCPWQ---SNLLATGGGTMDKQIHFWNA 291 (401)
T ss_dssp S-E-EEEEETTSCEEEEETTCSSEEEEECCCS----------SCCCEE---EECTTS---TTEEEEECCTTTCEEEEEET
T ss_pred C-E-EEEEeCCCeEEEccCCCCCccEEecCCc----------ceEEEE---EECCCC---CCEEEEecCCCCCEEEEEEC
Confidence 3 3 4456678999999999988776664321 112222 244432 22455654 7999999999
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEE--cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEE
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 325 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~--~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~ 325 (383)
++. .++..+. |...+.++.|++++..+++++ .|+.|++||+.... ......+..+...+.+++|+|++++|+++
T Consensus 292 ~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 367 (401)
T 4aez_A 292 ATG-ARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG--LTKQVDIPAHDTRVLYSALSPDGRILSTA 367 (401)
T ss_dssp TTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE--EEEEEEEECCSSCCCEEEECTTSSEEEEE
T ss_pred CCC-CEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc--ceeEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 874 4455554 567899999999999888854 89999999997543 22233345677889999999999999999
Q ss_pred eCCCcEEEEEcCCCceEEEe
Q 016769 326 GWDRRVRIYNYRKGSALAIL 345 (383)
Q Consensus 326 ~~dg~i~iwd~~~~~~~~~~ 345 (383)
+.||+|++||+.+++.+...
T Consensus 368 ~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 368 ASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp CTTSEEEEEECCC-------
T ss_pred eCCCcEEEEECCCCcccccc
Confidence 99999999999988876544
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-26 Score=208.16 Aligned_cols=184 Identities=16% Similarity=0.147 Sum_probs=133.6
Q ss_pred eeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC
Q 016769 172 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~ 251 (383)
+++++|+.+++|++||+++++.+..+... ....++. +.+. .++.+ .|+.|++||+++..
T Consensus 72 ~~~~~~~~d~~v~iWd~~~~~~~~~~~~~-----------~~v~~v~---~~~~------~~~~~-~~~~i~i~d~~~~~ 130 (355)
T 3vu4_A 72 YVAFVTGVKEVVHIWDDVKKQDVSRIKVD-----------APVKDLF---LSRE------FIVVS-YGDVISVFKFGNPW 130 (355)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEEECS-----------SCEEEEE---ECSS------EEEEE-ETTEEEEEESSTTC
T ss_pred EEEEEECCccEEEEEECCCCcEEEEEECC-----------CceEEEE---EcCC------EEEEE-EcCEEEEEECCCCc
Confidence 45556666789999999999887766421 1122221 2221 23333 48899999998752
Q ss_pred CceeeeeccccCeEEEEEeCCCCceEE--EEcCCcEEEEEccCCCCee------------EEeeeeecCCCCeEEEEECC
Q 016769 252 IPLTAMKVHLEPVLCLSIDESCNGGIS--GGADQKIVLYNLDHSTGSC------------VIKKEINLERPGISGTSIRP 317 (383)
Q Consensus 252 ~~~~~~~~h~~~v~~~~~~~~~~~~~s--~~~d~~i~~wdl~~~~~~~------------~~~~~~~~~~~~i~~~~~~p 317 (383)
..+..+.. +...+.+++ ..++. |+.|+.|++||+....... .....+..|...|.+++|+|
T Consensus 131 ~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~ 205 (355)
T 3vu4_A 131 KRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR 205 (355)
T ss_dssp CBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT
T ss_pred eeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC
Confidence 33333433 344455555 44444 5789999999997532000 00123456778899999999
Q ss_pred CCcEEEEEeCCCc-EEEEEcCCCceEEEec-c-cccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 318 DSKIAATAGWDRR-VRIYNYRKGSALAILK-Y-HHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 318 ~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~-~-h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
++++|++++.|++ |++||+.+++.+..+. + |...|.+++|+||+++|++++.|++|++||+..+
T Consensus 206 ~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 206 KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 9999999999999 9999999999999997 5 9999999999999999999999999999999644
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-27 Score=216.62 Aligned_cols=243 Identities=14% Similarity=0.100 Sum_probs=165.3
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCC--CCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceecc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG--LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV 140 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (383)
..+.++++++ ++++|++++.|++|++||+.++. ... .+.. | ...
T Consensus 12 ~~v~~~~~s~--~g~~l~~~~~d~~i~iw~~~~~~~~~~~----~~~~---h-------------------~~~------ 57 (377)
T 3dwl_C 12 KPSYEHAFNS--QRTEFVTTTATNQVELYEQDGNGWKHAR----TFSD---H-------------------DKI------ 57 (377)
T ss_dssp SCCSCCEECS--SSSEEECCCSSSCBCEEEEETTEEEECC----CBCC---C-------------------SSC------
T ss_pred CcEEEEEECC--CCCEEEEecCCCEEEEEEccCCceEEEE----EEec---C-------------------Cce------
Confidence 4578889998 46889999999999999997651 100 0000 0 000
Q ss_pred CcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCC---eeeEeccCcCCCCCCcCCCCCceee
Q 016769 141 GETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMCM 217 (383)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~ 217 (383)
.....+.+++. + +++++.|++|++||++++. ....+.. +...+.++
T Consensus 58 -------------------v~~~~~s~~~~-~-l~s~s~d~~v~vwd~~~~~~~~~~~~~~~----------~~~~v~~~ 106 (377)
T 3dwl_C 58 -------------------VTCVDWAPKSN-R-IVTCSQDRNAYVYEKRPDGTWKQTLVLLR----------LNRAATFV 106 (377)
T ss_dssp -------------------EEEEEECTTTC-C-EEEEETTSSEEEC------CCCCEEECCC----------CSSCEEEE
T ss_pred -------------------EEEEEEeCCCC-E-EEEEeCCCeEEEEEcCCCCceeeeeEecc----------cCCceEEE
Confidence 00012234443 3 3455678999999998876 3333321 11222222
Q ss_pred EEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC--ceeeeec-cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCC
Q 016769 218 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 294 (383)
Q Consensus 218 ~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~--~~~~~~~-h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~ 294 (383)
.+.|+. ..+++|+.|+.|++||++.... ....+.. |...|.++.|++++..+++++.|+.|++||++...
T Consensus 107 ---~~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 179 (377)
T 3dwl_C 107 ---RWSPNE----DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRD 179 (377)
T ss_dssp ---ECCTTS----SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSS
T ss_pred ---EECCCC----CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecc
Confidence 244432 2588999999999999987542 3456666 99999999999999999999999999999985321
Q ss_pred --------------CeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCce----EEEecccccceeEEE
Q 016769 295 --------------GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA----LAILKYHHATCNAVS 356 (383)
Q Consensus 295 --------------~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~v~ 356 (383)
......... .+...+.+++|+|++++|++++.|++|++||+.+++. +..+.+|...|.+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 258 (377)
T 3dwl_C 180 VDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLL 258 (377)
T ss_dssp CC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEE
T ss_pred cCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEE
Confidence 011112223 5667899999999999999999999999999999887 778889999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCC
Q 016769 357 FSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 357 ~spd~~~las~s~d~~i~~w~~~ 379 (383)
|+||+++|++|+.|+.+ +|+..
T Consensus 259 ~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 259 WANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEETTEEEEEESSSSEE-EECCC
T ss_pred EcCCCCEEEEEcCCcEE-EEEeC
Confidence 99999999999877766 66653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-26 Score=207.92 Aligned_cols=262 Identities=15% Similarity=0.123 Sum_probs=177.5
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
++..+.+|.+.|++++|+|++++|++|+.|+.|++||+.+++.............+.++.+.+ ++..|++++.|++++
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~ 121 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVIS 121 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEE
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEE
Confidence 667889999999999999999999999999999999997765333222222234678889988 468899999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+||++.+... ... ..+.... ... .....+.+++
T Consensus 122 i~d~~~~~~~----~~~---------~~~~~~~---------~~~-------------------------i~~~~~~~~~ 154 (372)
T 1k8k_C 122 ICYFEQENDW----WVC---------KHIKKPI---------RST-------------------------VLSLDWHPNS 154 (372)
T ss_dssp EEEEETTTTE----EEE---------EEECTTC---------CSC-------------------------EEEEEECTTS
T ss_pred EEEecCCCcc----eee---------eeeeccc---------CCC-------------------------eeEEEEcCCC
Confidence 9999765310 000 0000000 000 0001122333
Q ss_pred CceeeeccCCcceEEEEecC------------------CCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCce
Q 016769 170 PKYMAVAGEQLSEVEIWDLN------------------TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 231 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~------------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (383)
. + +++++.++.|++||++ +++.+..+.. +.....++ .+.|+. .
T Consensus 155 ~-~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~---~~~~~~----~ 215 (372)
T 1k8k_C 155 V-L-LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS----------SCGWVHGV---CFSANG----S 215 (372)
T ss_dssp S-E-EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC----------CSSCEEEE---EECSSS----S
T ss_pred C-E-EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC----------CCCeEEEE---EECCCC----C
Confidence 3 3 3455668999999965 3333333321 11122222 244432 3
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEe-----------
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK----------- 300 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~----------- 300 (383)
.+++++.|+.|++||+++. .++..+..|..++.++.|++++..++++ .|+.|++|+++...+.....
T Consensus 216 ~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 293 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKK-MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 293 (372)
T ss_dssp EEEEEETTTEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-----
T ss_pred EEEEEeCCCEEEEEECCCC-ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchh
Confidence 6889999999999999874 4577788899999999999988766655 99999999998621211000
Q ss_pred -------------------------eee-ecCCCCeEEEEEC-CCC---cEEEEEeCCCcEEEEEcCCCce
Q 016769 301 -------------------------KEI-NLERPGISGTSIR-PDS---KIAATAGWDRRVRIYNYRKGSA 341 (383)
Q Consensus 301 -------------------------~~~-~~~~~~i~~~~~~-p~~---~~l~s~~~dg~i~iwd~~~~~~ 341 (383)
..+ ..+...|+++++. +++ ++|++++.||+|++||+.+++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 294 RGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp ---CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred hhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 111 2567789999865 676 9999999999999999976543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-26 Score=215.30 Aligned_cols=266 Identities=18% Similarity=0.322 Sum_probs=174.3
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
.+.+.++.+|.+.|++++| ++++|++|+.||+|++||+.+++++..+..|. ..+.++.+.+ +.+++++.|++
T Consensus 163 ~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~----~~l~s~s~dg~ 234 (435)
T 1p22_A 163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC--EAVLHLRFNN----GMMVTCSKDRS 234 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCC--SCEEEEECCT----TEEEEEETTSC
T ss_pred CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCC--CcEEEEEEcC----CEEEEeeCCCc
Confidence 3456788999999999999 78899999999999999999888776655443 4577777754 68999999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
|++||++++.... .. ....... .. +..+..
T Consensus 235 i~vwd~~~~~~~~----~~----------~~~~~~~---------~~---------------------------v~~~~~ 264 (435)
T 1p22_A 235 IAVWDMASPTDIT----LR----------RVLVGHR---------AA---------------------------VNVVDF 264 (435)
T ss_dssp EEEEECSSSSCCE----EE----------EEECCCS---------SC---------------------------EEEEEE
T ss_pred EEEEeCCCCCCce----ee----------eEecCCC---------Cc---------------------------EEEEEe
Confidence 9999998764210 00 0000000 00 000011
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
++ ++ +++|+.|+.|++||+++++.+..+..+ .....++. + + ...+++|+.||+|++||+
T Consensus 265 ~~-~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~----------~~~v~~~~---~--~----~~~l~~g~~dg~i~iwd~ 323 (435)
T 1p22_A 265 DD-KY-IVSASGDRTIKVWNTSTCEFVRTLNGH----------KRGIACLQ---Y--R----DRLVVSGSSDNTIRLWDI 323 (435)
T ss_dssp ET-TE-EEEEETTSEEEEEETTTCCEEEEEECC----------SSCEEEEE---E--E----TTEEEEEETTSCEEEEET
T ss_pred CC-CE-EEEEeCCCeEEEEECCcCcEEEEEcCC----------CCcEEEEE---e--C----CCEEEEEeCCCeEEEEEC
Confidence 22 23 345567899999999999887776532 11222322 2 1 126889999999999999
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCee-----EEeeeeecCCCCeEEEEECCCCcEE
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC-----VIKKEINLERPGISGTSIRPDSKIA 322 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~-----~~~~~~~~~~~~i~~~~~~p~~~~l 322 (383)
++. .++..+..|..+|.++.++ +..+++|+.|+.|++||+....... .....+..+...|.+++| ++++|
T Consensus 324 ~~~-~~~~~~~~h~~~v~~~~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l 398 (435)
T 1p22_A 324 ECG-ACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQI 398 (435)
T ss_dssp TTC-CEEEEECCCSSCEEEEECC--SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCE
T ss_pred CCC-CEEEEEeCCcCcEEEEEec--CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEE
Confidence 874 5577888999999999994 5678999999999999986432100 012234556678999999 77889
Q ss_pred EEEeCCCcEEEEEcCCCceEEEecccccceeEEEEe
Q 016769 323 ATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 358 (383)
Q Consensus 323 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~s 358 (383)
++++.||+|++||+.......... ...+..++.|.
T Consensus 399 ~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 433 (435)
T 1p22_A 399 VSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI 433 (435)
T ss_dssp EECCSSSEEEEEC-----------------------
T ss_pred EEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence 999999999999998765443221 23344444454
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=216.77 Aligned_cols=147 Identities=12% Similarity=0.158 Sum_probs=116.3
Q ss_pred EEEEEeCCCcEEEEeCCCCCCcee-------eeeccccCeEEEEEeCCC-CceEEEEcCCcEEEEEccCCCCeeEEeeee
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLT-------AMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEI 303 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~-------~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~ 303 (383)
.+++| .|+.|++||+++....+. .+..|...|.++.|++++ ..+++++.|+.|++||++...........+
T Consensus 191 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 269 (447)
T 3dw8_B 191 TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLF 269 (447)
T ss_dssp EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEE
T ss_pred EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEe
Confidence 57777 899999999985343333 356789999999999998 889999999999999998654310001122
Q ss_pred ecCCC------------CeEEEEECCCCcEEEEEeCCCcEEEEEcCC-CceEEEecccccc---------------eeEE
Q 016769 304 NLERP------------GISGTSIRPDSKIAATAGWDRRVRIYNYRK-GSALAILKYHHAT---------------CNAV 355 (383)
Q Consensus 304 ~~~~~------------~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~v 355 (383)
..+.. .+.+++|+|++++|++++. ++|++||+.. ++.+..+.+|... +..+
T Consensus 270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 348 (447)
T 3dw8_B 270 EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFEC 348 (447)
T ss_dssp CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCE
T ss_pred ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEE
Confidence 22322 7999999999999999998 9999999987 8888888888642 2348
Q ss_pred EEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 356 SFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 356 ~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+|+|++++|++|+.|+.|++||+..
T Consensus 349 ~~s~~~~~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 349 CWNGSDSVVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp EECTTSSEEEEECSTTEEEEEETTT
T ss_pred EECCCCCEEEEeccCCEEEEEEcCC
Confidence 9999999999999999999999863
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-26 Score=213.66 Aligned_cols=258 Identities=14% Similarity=0.144 Sum_probs=156.6
Q ss_pred eeeeeecCCceeeEEEeC-CCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 11 VAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~-~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
...+.||.+.|++|+|+| ++.+|+|||.|++|++||+.+.........+.....+.++++++ ++..|++|+.|++|+
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~g~~dg~i~ 234 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA--SSRMVVTGDNVGNVI 234 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET--TTTEEEEECSSSBEE
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC--CCCEEEEEeCCCcEe
Confidence 445679999999999998 68899999999999999987543222111222223456778887 468899999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+||++.... ..+..+.. .+ ....+.+.+
T Consensus 235 ~wd~~~~~~-----~~~~~h~~----------------------~v-------------------------~~v~~~p~~ 262 (435)
T 4e54_B 235 LLNMDGKEL-----WNLRMHKK----------------------KV-------------------------THVALNPCC 262 (435)
T ss_dssp EEESSSCBC-----CCSBCCSS----------------------CE-------------------------EEEEECTTC
T ss_pred eeccCccee-----EEEecccc----------------------eE-------------------------EeeeecCCC
Confidence 999864321 00000000 00 001123344
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
.. ++++++.|++|++||+++.+....+... ..+...+.++ .|.|+. ..+++|+.|++|++||+++
T Consensus 263 ~~-~~~s~s~d~~v~iwd~~~~~~~~~~~~~-------~~h~~~v~~~---~~spdg----~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 263 DW-FLATASVDQTVKIWDLRQVRGKASFLYS-------LPHRHPVNAA---CFSPDG----ARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp SS-EEEEEETTSBCCEEETTTCCSSSCCSBC-------CBCSSCEEEC---CBCTTS----SEEEEEESSSCEEEEESSS
T ss_pred ce-EEEEecCcceeeEEecccccccceEEEe-------eeccccccce---eECCCC----CeeEEEcCCCEEEEEECCC
Confidence 33 4556677899999999886643322110 0111122221 244432 3688999999999999987
Q ss_pred CCCceeeeecccc------CeEEEEEeCCCCceEEEE------------cCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 250 PGIPLTAMKVHLE------PVLCLSIDESCNGGISGG------------ADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 250 ~~~~~~~~~~h~~------~v~~~~~~~~~~~~~s~~------------~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
...+ ..+..|.. .+....+++.+..+++++ .++.|++||+.... ... .....+...|.
T Consensus 328 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~--~~~-~l~~~~~~~v~ 403 (435)
T 4e54_B 328 WDCP-LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK--MMC-QLYDPESSGIS 403 (435)
T ss_dssp SSSE-EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC--EEE-EECCSSCCCCC
T ss_pred Cccc-eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc--EEE-EEeCCCCCcEE
Confidence 5432 23333321 122334455444444432 34679999987543 221 12234556677
Q ss_pred EE-EECCCCcEEEEEeCCCcEEEEEcCCCceE
Q 016769 312 GT-SIRPDSKIAATAGWDRRVRIYNYRKGSAL 342 (383)
Q Consensus 312 ~~-~~~p~~~~l~s~~~dg~i~iwd~~~~~~~ 342 (383)
++ +|+|++++|++|+ |++|+|||+++++..
T Consensus 404 s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 404 SLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 76 6999999998865 889999999887753
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=198.77 Aligned_cols=197 Identities=18% Similarity=0.236 Sum_probs=148.1
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCC--CeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcE
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 242 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i 242 (383)
++++++ + +++|+.|++|++||++.. +.+..+.. +.+.+.++ .|.+.. ....+++|+.|++|
T Consensus 17 ~s~~g~-~-las~s~D~~v~iw~~~~~~~~~~~~l~g----------H~~~V~~v---~~s~~~--~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 17 MDYYGK-R-MATCSSDKTIKIFEVEGETHKLIDTLTG----------HEGPVWRV---DWAHPK--FGTILASCSYDGKV 79 (297)
T ss_dssp ECTTSS-E-EEEEETTSCEEEEEBCSSCBCCCEEECC----------CSSCEEEE---EECCGG--GCSEEEEEETTTEE
T ss_pred ECCCCC-E-EEEEeCCCEEEEEecCCCCcEEEEEEcc----------ccCCeEEE---EecCCC--cCCEEEEEcCCCEE
Confidence 345554 3 455677899999999753 34445442 12223332 233211 11358899999999
Q ss_pred EEEeCCCCC-CceeeeeccccCeEEEEEeCC--CCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCC-
Q 016769 243 LVWDIRNPG-IPLTAMKVHLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD- 318 (383)
Q Consensus 243 ~~wdl~~~~-~~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~- 318 (383)
++||++++. ..+..+..|..+|.++.|+++ +..+++++.|+.|++||++...... ......+...+.+++|+|+
T Consensus 80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~--~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC--CEEEECCSSCEEEEEECCCC
T ss_pred EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee--eeeeecccCccceEeecCCc
Confidence 999998643 234567789999999999886 7789999999999999997542211 1233456678999999997
Q ss_pred ------------CcEEEEEeCCCcEEEEEcCCCc----eEEEecccccceeEEEEeCCC---CEEEEEeCCCcEEEEeCC
Q 016769 319 ------------SKIAATAGWDRRVRIYNYRKGS----ALAILKYHHATCNAVSFSSDC---KLMASASEDSTVALWELY 379 (383)
Q Consensus 319 ------------~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~v~~spd~---~~las~s~d~~i~~w~~~ 379 (383)
+++|++|+.|++|++||+++++ ....+.+|...|.+++|+|++ ++||+||.|++|++||+.
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 5799999999999999998765 556788999999999999995 799999999999999985
Q ss_pred C
Q 016769 380 P 380 (383)
Q Consensus 380 ~ 380 (383)
.
T Consensus 238 ~ 238 (297)
T 2pm7_B 238 N 238 (297)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=205.09 Aligned_cols=247 Identities=15% Similarity=0.173 Sum_probs=169.4
Q ss_pred ceeeeeeecCCCCc-ceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccC
Q 016769 63 HGIVSVATGPSIGL-NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG 141 (383)
Q Consensus 63 ~~~~~~~~~~~~~~-~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (383)
..+.+++++++ + ..|++++.|++|++||+.++.... .+.. ... ...+.
T Consensus 74 ~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~-----------~~h---------~~~v~----- 122 (383)
T 3ei3_B 74 RRVTSLEWHPT--HPTTVAVGSKGGDIILWDYDVQNKTS----FIQG-----------MGP---------GDAIT----- 122 (383)
T ss_dssp SCEEEEEECSS--CTTEEEEEEBTSCEEEEETTSTTCEE----EECC-----------CST---------TCBEE-----
T ss_pred CCEEEEEECCC--CCCEEEEEcCCCeEEEEeCCCcccce----eeec-----------CCc---------CCcee-----
Confidence 46888999984 4 789999999999999998664210 0000 000 00000
Q ss_pred cccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEe
Q 016769 142 ETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 221 (383)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 221 (383)
...+.+.+..+ +++++.|+.|++||+++ ..+..+.... .......++ .
T Consensus 123 --------------------~~~~~~~~~~~-l~s~~~d~~i~iwd~~~-~~~~~~~~~~-------~~~~~v~~~---~ 170 (383)
T 3ei3_B 123 --------------------GMKFNQFNTNQ-LFVSSIRGATTLRDFSG-SVIQVFAKTD-------SWDYWYCCV---D 170 (383)
T ss_dssp --------------------EEEEETTEEEE-EEEEETTTEEEEEETTS-CEEEEEECCC-------CSSCCEEEE---E
T ss_pred --------------------EEEeCCCCCCE-EEEEeCCCEEEEEECCC-CceEEEeccC-------CCCCCeEEE---E
Confidence 01122212233 44556789999999986 3333333210 011122222 2
Q ss_pred ecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCCeeEEe
Q 016769 222 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIK 300 (383)
Q Consensus 222 ~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~~~~~~ 300 (383)
+.|+. ..+++|+.|+.|++||++ ..++..+..|...|.++.|++++. .+++++.|+.|++||+..........
T Consensus 171 ~~~~~----~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 244 (383)
T 3ei3_B 171 VSVSR----QMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI 244 (383)
T ss_dssp EETTT----TEEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE
T ss_pred ECCCC----CEEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE
Confidence 44432 268899999999999995 345778889999999999999988 78999999999999998633211111
Q ss_pred eeeecCCCCeEEEEECC-CCcEEEEEeCCCcEEEEEcCCCceEEEecccc-----------------cceeEEEEeCCCC
Q 016769 301 KEINLERPGISGTSIRP-DSKIAATAGWDRRVRIYNYRKGSALAILKYHH-----------------ATCNAVSFSSDCK 362 (383)
Q Consensus 301 ~~~~~~~~~i~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-----------------~~v~~v~~spd~~ 362 (383)
... .+...+.+++|+| ++++|++++.|++|++||+.+++....+.+|. ..+..++|+||++
T Consensus 245 ~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~ 323 (383)
T 3ei3_B 245 AEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ 323 (383)
T ss_dssp EEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT
T ss_pred EEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc
Confidence 122 3567899999999 99999999999999999999887766665553 2344577778877
Q ss_pred EEEEEeCCCcEEEEeCCCC
Q 016769 363 LMASASEDSTVALWELYPP 381 (383)
Q Consensus 363 ~las~s~d~~i~~w~~~~~ 381 (383)
+ +|+.|+.|++||+...
T Consensus 324 ~--s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 324 L--LLNDKRTIDIYDANSG 340 (383)
T ss_dssp T--CTTCCCCEEEEETTTC
T ss_pred c--ccCCCCeEEEEecCCC
Confidence 7 8889999999998643
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-24 Score=200.83 Aligned_cols=266 Identities=12% Similarity=0.143 Sum_probs=189.0
Q ss_pred CeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCccee-EecccCCeEEEeecCCCCCCCCCeeeeecC
Q 016769 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (383)
Q Consensus 31 ~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~ 109 (383)
.++++++.|+.|++||+.+++.+..+..+. .+.+++++++ ++.+ ++++.|++|++||+++++... .+..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~---~~~~~~~s~d--g~~l~~~~~~d~~i~v~d~~~~~~~~----~~~~~ 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS---NPMGAVISPD--GTKVYVANAHSNDVSIIDTATNNVIA----TVPAG 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTT--SSEEEEEEGGGTEEEEEETTTTEEEE----EEECS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC---CcceEEECCC--CCEEEEECCCCCeEEEEECCCCeEEE----EEECC
Confidence 478999999999999998887766554332 4678888884 5555 688899999999998764210 00000
Q ss_pred ceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecC
Q 016769 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLN 189 (383)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~ 189 (383)
. . .....++++++ ++++++..++.|++||++
T Consensus 74 -------------~----------~-------------------------v~~~~~spdg~-~l~~~~~~~~~v~v~d~~ 104 (391)
T 1l0q_A 74 -------------S----------S-------------------------PQGVAVSPDGK-QVYVTNMASSTLSVIDTT 104 (391)
T ss_dssp -------------S----------S-------------------------EEEEEECTTSS-EEEEEETTTTEEEEEETT
T ss_pred -------------C----------C-------------------------ccceEECCCCC-EEEEEECCCCEEEEEECC
Confidence 0 0 00012234443 556667777999999999
Q ss_pred CCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEE
Q 016769 190 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI 269 (383)
Q Consensus 190 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~ 269 (383)
+++.+..+..+. ....+ .+.++ +...+++++.|+.|++||+++. ..+..+..| ..+..+.|
T Consensus 105 ~~~~~~~~~~~~-----------~~~~~---~~s~d---g~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~ 165 (391)
T 1l0q_A 105 SNTVAGTVKTGK-----------SPLGL---ALSPD---GKKLYVTNNGDKTVSVINTVTK-AVINTVSVG-RSPKGIAV 165 (391)
T ss_dssp TTEEEEEEECSS-----------SEEEE---EECTT---SSEEEEEETTTTEEEEEETTTT-EEEEEEECC-SSEEEEEE
T ss_pred CCeEEEEEeCCC-----------CcceE---EECCC---CCEEEEEeCCCCEEEEEECCCC-cEEEEEecC-CCcceEEE
Confidence 988766554211 11111 24443 2223468888999999999874 345555554 45689999
Q ss_pred eCCCCce-EEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEe---CCCcEEEEEcCCCceEEEe
Q 016769 270 DESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG---WDRRVRIYNYRKGSALAIL 345 (383)
Q Consensus 270 ~~~~~~~-~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~---~dg~i~iwd~~~~~~~~~~ 345 (383)
++++..+ ++++.|+.|++||+.... ... ... ....+.+++|+|+++++++++ .++.|++||+.+++.+..+
T Consensus 166 ~~dg~~l~~~~~~~~~v~~~d~~~~~--~~~--~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~ 240 (391)
T 1l0q_A 166 TPDGTKVYVANFDSMSISVIDTVTNS--VID--TVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTE--EEE--EEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCe--EEE--EEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence 9999877 567788999999997543 221 122 235688999999999988888 6999999999999988888
Q ss_pred cccccceeEEEEeCCCCEE-EEEeCCCcEEEEeCC
Q 016769 346 KYHHATCNAVSFSSDCKLM-ASASEDSTVALWELY 379 (383)
Q Consensus 346 ~~h~~~v~~v~~spd~~~l-as~s~d~~i~~w~~~ 379 (383)
..|. .+.+++|+||+++| ++++.|+.|++||+.
T Consensus 241 ~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 241 PVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp ECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 7665 47899999999976 788999999999985
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=202.60 Aligned_cols=234 Identities=18% Similarity=0.181 Sum_probs=153.8
Q ss_pred CeeeeeecCCceeeEEEeC--CCCeEEEecCCCeEEEeeCcccc--cccccccccccceeeeeeecCCCCcceeEecccC
Q 016769 10 PVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~--~~~~L~sgs~D~~v~vW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
++.+|+||.+.|++|+|++ ++++|+|||.|++|++||+.+++ +...+..|. ..+.++++.|...+..|++++.|
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~--~~V~~v~~~p~~~g~~lasgs~D 126 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD--SSVNSVCWAPHDYGLILACGSSD 126 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS--SCCCEEEECCTTTCSCEEEECSS
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC--CceEEEEECCCCCCcEEEEEcCC
Confidence 4568999999999999976 48999999999999999997653 222332332 45788999885335789999999
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
++|++||+.++... ........| ...+. . ..+
T Consensus 127 ~~i~lwd~~~~~~~----~~~~~~~~h-------------------~~~v~---------------------~----~~~ 158 (316)
T 3bg1_A 127 GAISLLTYTGEGQW----EVKKINNAH-------------------TIGCN---------------------A----VSW 158 (316)
T ss_dssp SCEEEEEECSSSCE----EECCBTTSS-------------------SSCBC---------------------C----CEE
T ss_pred CCEEEEecCCCCCc----ceeeeeccc-------------------cCCcc---------------------e----EEE
Confidence 99999998754210 000000000 00000 0 000
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEE
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~w 245 (383)
.++.. .+ .+ -+...+ . .+ .....+++|+.|++|++|
T Consensus 159 ~~~~~-----~~----~~--~~~~~~----------------~--------------~~---~~~~~l~sgs~D~~v~lW 194 (316)
T 3bg1_A 159 APAVV-----PG----SL--IDHPSG----------------Q--------------KP---NYIKRFASGGCDNLIKLW 194 (316)
T ss_dssp CCCCC-----C------------CCS----------------C--------------CC---CCCCBEECCBTTSBCCEE
T ss_pred ccccC-----Cc----cc--cccccc----------------c--------------Cc---cccceEEEecCCCeEEEE
Confidence 01000 00 00 000000 0 00 001147889999999999
Q ss_pred eCCCCC--CceeeeeccccCeEEEEEeCCC----CceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC
Q 016769 246 DIRNPG--IPLTAMKVHLEPVLCLSIDESC----NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 319 (383)
Q Consensus 246 dl~~~~--~~~~~~~~h~~~v~~~~~~~~~----~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 319 (383)
|++... .+...+++|..+|.+++|+|++ ..+++++.|++|++|+++...........+..+...+.+++|+|++
T Consensus 195 d~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g 274 (316)
T 3bg1_A 195 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA 274 (316)
T ss_dssp EECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT
T ss_pred EeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC
Confidence 997532 2456778999999999999876 6789999999999999875321000011123345789999999999
Q ss_pred cEEEEEeCCCcEEEEEcC
Q 016769 320 KIAATAGWDRRVRIYNYR 337 (383)
Q Consensus 320 ~~l~s~~~dg~i~iwd~~ 337 (383)
++||+++.|++|++|+..
T Consensus 275 ~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 275 NILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCEEEEESSSCEEEEEEC
T ss_pred CEEEEEcCCCeEEEEEEC
Confidence 999999999999999985
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-24 Score=200.18 Aligned_cols=294 Identities=13% Similarity=0.126 Sum_probs=164.5
Q ss_pred eecCCceeeEEEeC-CCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCC-CcceeEecccCCeEEEee
Q 016769 15 RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 15 ~gH~~~V~~v~f~~-~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~D~ti~~Wd 92 (383)
.+|.+.|++++|+| ++.+|++++.|+.|++||+.+++....... ...+.++.+.+.. ++..+++++.|+.|++||
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF---EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC---CCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 36999999999999 778999999999999999988766554332 2345566666532 235789999999999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
++++.... .+..+.. . .....+.++++ +
T Consensus 173 ~~~~~~~~----~~~~~~~----------------------~-------------------------v~~~~~~~~~~-~ 200 (408)
T 4a11_B 173 LKSGSCSH----ILQGHRQ----------------------E-------------------------ILAVSWSPRYD-Y 200 (408)
T ss_dssp SSSSCCCE----EECCCCS----------------------C-------------------------EEEEEECSSCT-T
T ss_pred CCCcceee----eecCCCC----------------------c-------------------------EEEEEECCCCC-c
Confidence 98764211 1100000 0 00011233443 3
Q ss_pred eeeccCCcceEEEEecCCCC-eeeEeccCcCCC--CC---CcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 173 MAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGG--SP---NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~-~~~~~~~~~~~~--s~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
++++++.++.|++||+++.. .+..+....... .. ...+...+.++ .+.|+. ..+++++.||.|++||
T Consensus 201 ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~----~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL---CFTSDG----LHLLTVGTDNRMRLWN 273 (408)
T ss_dssp EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE---EECTTS----SEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE---EEcCCC----CEEEEecCCCeEEEEE
Confidence 45566778999999998876 334332211000 00 01112222222 344432 3688999999999999
Q ss_pred CCCCCCceeeeecc-----ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcE
Q 016769 247 IRNPGIPLTAMKVH-----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 321 (383)
Q Consensus 247 l~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 321 (383)
+++..... ....+ ...+...........++.++.|+.|++||+...... ..+..+...|.+++|+|++++
T Consensus 274 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~----~~~~~~~~~v~~~~~s~~~~~ 348 (408)
T 4a11_B 274 SSNGENTL-VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI----TMLKGHYKTVDCCVFQSNFQE 348 (408)
T ss_dssp TTTCCBCC-CCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE----EEECCCSSCEEEEEEETTTTE
T ss_pred CCCCccce-eccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce----eeeccCCCeEEEEEEcCCCCE
Confidence 98754321 11111 112222222333445678889999999999764322 234556778999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeC-CCCEEEEEeCCCcEEEEeC
Q 016769 322 AATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS-DCKLMASASEDSTVALWEL 378 (383)
Q Consensus 322 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp-d~~~las~s~d~~i~~w~~ 378 (383)
|++++.||.|++||+.+++.+.....+... ..+.| +...+.+.+.|+.+++|+.
T Consensus 349 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 349 LYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp EEEEETTSCEEEEEECC-----------------------------------------
T ss_pred EEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCC
Confidence 999999999999999998877655433322 23444 3346678889999999986
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-24 Score=193.58 Aligned_cols=241 Identities=16% Similarity=0.198 Sum_probs=176.8
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..+.++++++ ++..|++++.|++|++||+.+++.. ..+..+.. .+
T Consensus 33 ~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~h~~----------------------~v------- 77 (369)
T 3zwl_B 33 RPLTQVKYNK--EGDLLFSCSKDSSASVWYSLNGERL----GTLDGHTG----------------------TI------- 77 (369)
T ss_dssp SCEEEEEECT--TSCEEEEEESSSCEEEEETTTCCEE----EEECCCSS----------------------CE-------
T ss_pred ceEEEEEEcC--CCCEEEEEeCCCEEEEEeCCCchhh----hhhhhcCC----------------------cE-------
Confidence 4688899998 4688999999999999999876421 11100000 00
Q ss_pred ccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEee
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 222 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 222 (383)
....+.+++. ++ ++++.++.|++||+++++.+..+... ....++ .+
T Consensus 78 ------------------~~~~~~~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~-----------~~v~~~---~~ 123 (369)
T 3zwl_B 78 ------------------WSIDVDCFTK-YC-VTGSADYSIKLWDVSNGQCVATWKSP-----------VPVKRV---EF 123 (369)
T ss_dssp ------------------EEEEECTTSS-EE-EEEETTTEEEEEETTTCCEEEEEECS-----------SCEEEE---EE
T ss_pred ------------------EEEEEcCCCC-EE-EEEeCCCeEEEEECCCCcEEEEeecC-----------CCeEEE---EE
Confidence 0011223333 34 44566899999999998877666421 112222 24
Q ss_pred cCCCCCCceEEEEEeCC-----CcEEEEeCCCCCC----------ceeeeecccc--CeEEEEEeCCCCceEEEEcCCcE
Q 016769 223 LPSKSQGFVNVLAGYED-----GSILVWDIRNPGI----------PLTAMKVHLE--PVLCLSIDESCNGGISGGADQKI 285 (383)
Q Consensus 223 ~~~~~~~~~~~~sg~~d-----g~i~~wdl~~~~~----------~~~~~~~h~~--~v~~~~~~~~~~~~~s~~~d~~i 285 (383)
.+.. ..+++++.+ +.|++||++.... +...+..|.. .+.++.|++++..+++++.|+.|
T Consensus 124 ~~~~----~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 199 (369)
T 3zwl_B 124 SPCG----NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKI 199 (369)
T ss_dssp CTTS----SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEE
T ss_pred ccCC----CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEE
Confidence 4432 257788888 9999999876432 2334445555 89999999999999999999999
Q ss_pred EEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEE
Q 016769 286 VLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMA 365 (383)
Q Consensus 286 ~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~la 365 (383)
++||+.... .. ......+...+.+++|+|++++|++++.|+.|++||+.+++.+..+. +...+.+++|+|++++++
T Consensus 200 ~i~d~~~~~-~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ 275 (369)
T 3zwl_B 200 SKYDVSNNY-EY--VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFII 275 (369)
T ss_dssp EEEETTTTT-EE--EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEE
T ss_pred EEEECCCCc-Ee--EEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEE
Confidence 999997522 11 23344566789999999999999999999999999999999888876 788899999999999999
Q ss_pred EEeCCC--------------cEEEEeCCC
Q 016769 366 SASEDS--------------TVALWELYP 380 (383)
Q Consensus 366 s~s~d~--------------~i~~w~~~~ 380 (383)
+++.++ .|++||+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 304 (369)
T 3zwl_B 276 LGGGQEAKDVTTTSANEGKFEARFYHKIF 304 (369)
T ss_dssp EEECCC-------------CEEEEEETTT
T ss_pred EeecCCCceEEEEecCCCcceeEEEecCC
Confidence 999999 899999854
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-24 Score=200.26 Aligned_cols=286 Identities=16% Similarity=0.244 Sum_probs=183.2
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
.+++.++.+|.+.|++++|+ +++|++|+.||+|++||+.+++++..+..|. ..+.++.+.+ +.+++++.|++
T Consensus 149 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~----~~l~s~s~dg~ 220 (445)
T 2ovr_B 149 GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHT--STVRCMHLHE----KRVVSGSRDAT 220 (445)
T ss_dssp CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEET----TEEEEEETTSE
T ss_pred CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCC--CcEEEEEecC----CEEEEEeCCCE
Confidence 35667889999999999997 5699999999999999998887776655443 3466777653 67999999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
|++||+++++.. ..+..+.......... ..........+....++...+.... .. . .....+..+..
T Consensus 221 i~~wd~~~~~~~----~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~-~~-~------~~~~~v~~~~~ 287 (445)
T 2ovr_B 221 LRVWDIETGQCL----HVLMGHVAAVRCVQYD-GRRVVSGAYDFMVKVWDPETETCLH-TL-Q------GHTNRVYSLQF 287 (445)
T ss_dssp EEEEESSSCCEE----EEEECCSSCEEEEEEC-SSCEEEEETTSCEEEEEGGGTEEEE-EE-C------CCSSCEEEEEE
T ss_pred EEEEECCCCcEE----EEEcCCcccEEEEEEC-CCEEEEEcCCCEEEEEECCCCcEeE-Ee-c------CCCCceEEEEE
Confidence 999999876421 1222221111111111 1111111111111112211111000 00 0 00011111222
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
++ .+ +++++.|+.|++||+++++.+..+..+. ....++. + . ...+++|+.||.|++||+
T Consensus 288 ~~-~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~v~~~~---~--~----~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 288 DG-IH-VVSGSLDTSIRVWDVETGNCIHTLTGHQ----------SLTSGME---L--K----DNILVSGNADSTVKIWDI 346 (445)
T ss_dssp CS-SE-EEEEETTSCEEEEETTTCCEEEEECCCC----------SCEEEEE---E--E----TTEEEEEETTSCEEEEET
T ss_pred CC-CE-EEEEeCCCeEEEEECCCCCEEEEEcCCc----------ccEEEEE---E--e----CCEEEEEeCCCeEEEEEC
Confidence 33 33 4456678999999999998777664321 1112221 1 1 125889999999999999
Q ss_pred CCCCCceeeeec---cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee-eecCCCCeEEEEECCCCcEEE
Q 016769 248 RNPGIPLTAMKV---HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE-INLERPGISGTSIRPDSKIAA 323 (383)
Q Consensus 248 ~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l~ 323 (383)
++. ..+..+.. |..+|.++.+++ ..+++++.|+.|++||+........+... ...+...+.+++|+|++.+++
T Consensus 347 ~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la 423 (445)
T 2ovr_B 347 KTG-QCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA 423 (445)
T ss_dssp TTC-CEEEEECSTTSCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred CCC-cEEEEEccCCCCCCCEEEEEECC--CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEE
Confidence 874 44566665 788999999974 67899999999999999765432222111 124556799999999999999
Q ss_pred EEeCCCc----EEEEEcCC
Q 016769 324 TAGWDRR----VRIYNYRK 338 (383)
Q Consensus 324 s~~~dg~----i~iwd~~~ 338 (383)
+|+.||+ |.+||...
T Consensus 424 ~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 424 VGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EECSSSSSCCEEEEEECCC
T ss_pred EcccCCCCccEEEEEECCC
Confidence 9999998 99999964
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-24 Score=197.60 Aligned_cols=251 Identities=17% Similarity=0.224 Sum_probs=176.1
Q ss_pred CceeeEEEeCCCC-eEEEecCCCeEEEeeCccccc----ccccccccccceeeeeeecCCCCcceeEecccCCeEEEeec
Q 016769 19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRT----VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (383)
Q Consensus 19 ~~V~~v~f~~~~~-~L~sgs~D~~v~vW~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~ 93 (383)
.....++++|+.. ++++++.||.|+||++..... ...+..| ...+.++++++. +++.|++++.|++|++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h--~~~V~~~~~~p~-~~~~l~s~s~dg~v~vw~~ 111 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGH--TAPVLDIAWCPH-NDNVIASGSEDCTVMVWEI 111 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCC--SSCEEEEEECTT-CTTEEEEEETTSEEEEEEC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecC--CCCEEEEEeCCC-CCCEEEEEeCCCeEEEEEc
Confidence 3445688898875 455689999999999855322 2223233 346888999883 3578999999999999999
Q ss_pred CCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCcee
Q 016769 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYM 173 (383)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (383)
+++....... . ...
T Consensus 112 ~~~~~~~~~~-----------------------------------------------------------------~-~~~ 125 (402)
T 2aq5_A 112 PDGGLVLPLR-----------------------------------------------------------------E-PVI 125 (402)
T ss_dssp CTTCCSSCBC-----------------------------------------------------------------S-CSE
T ss_pred cCCCCccccC-----------------------------------------------------------------C-ceE
Confidence 7653210000 0 000
Q ss_pred eeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCc
Q 016769 174 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 253 (383)
Q Consensus 174 ~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~ 253 (383)
...+ +.+. +.++ .+.|.. ...+++|+.|++|++||+++. ..
T Consensus 126 ~~~~-h~~~-------------------------------v~~~---~~~p~~---~~~l~s~~~dg~i~iwd~~~~-~~ 166 (402)
T 2aq5_A 126 TLEG-HTKR-------------------------------VGIV---AWHPTA---QNVLLSAGCDNVILVWDVGTG-AA 166 (402)
T ss_dssp EEEC-CSSC-------------------------------EEEE---EECSSB---TTEEEEEETTSCEEEEETTTT-EE
T ss_pred EecC-CCCe-------------------------------EEEE---EECcCC---CCEEEEEcCCCEEEEEECCCC-Cc
Confidence 0000 0000 0011 122221 125788999999999999874 44
Q ss_pred eeee--eccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeee-ecCCC-CeEEEEECCCCcEEEEE---e
Q 016769 254 LTAM--KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI-NLERP-GISGTSIRPDSKIAATA---G 326 (383)
Q Consensus 254 ~~~~--~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~-~~~~~-~i~~~~~~p~~~~l~s~---~ 326 (383)
...+ ..|...|.++.|++++..+++++.|+.|++||++... ... .. ..+.. .+..+.|+|+++++++| +
T Consensus 167 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~ 242 (402)
T 2aq5_A 167 VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT--VVA--EKDRPHEGTRPVHAVFVSEGKILTTGFSRM 242 (402)
T ss_dssp EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--EEE--EEECSSCSSSCCEEEECSTTEEEEEEECTT
T ss_pred cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc--eee--eeccCCCCCcceEEEEcCCCcEEEEeccCC
Confidence 5666 6799999999999999999999999999999997543 222 22 23433 38899999999999999 7
Q ss_pred CCCcEEEEEcCCCce-EEEe-cccccceeEEEEeCCCCEEE-EEeCCCcEEEEeCCCC
Q 016769 327 WDRRVRIYNYRKGSA-LAIL-KYHHATCNAVSFSSDCKLMA-SASEDSTVALWELYPP 381 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~-~~~~-~~h~~~v~~v~~spd~~~la-s~s~d~~i~~w~~~~~ 381 (383)
.|+.|++||+.+++. +... ..|...+.+++|+||+++|+ +|+.|+.|++||+...
T Consensus 243 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 243 SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp CCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred CCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 999999999988654 3222 25777899999999999886 5668999999998643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-24 Score=192.43 Aligned_cols=249 Identities=16% Similarity=0.192 Sum_probs=170.7
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccc---cccccccccccceeeeeeecCCCCcceeEecccC
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
+....+.+|.+.|++++|+|++++|++|+.|+.|++|++.... ....+..|. ..+.++.+. ++.+++++.|
T Consensus 50 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~----~~~l~~~~~d 123 (313)
T 3odt_A 50 WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQ--GNVCSLSFQ----DGVVISGSWD 123 (313)
T ss_dssp EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCS--SCEEEEEEE----TTEEEEEETT
T ss_pred EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcc--cCEEEEEec----CCEEEEEeCC
Confidence 3456788999999999999999999999999999999986543 233333332 456677773 4789999999
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
+++++||. +.. ...+..+... + . ...+
T Consensus 124 ~~i~~~d~--~~~----~~~~~~~~~~----------------------v------------------------~-~~~~ 150 (313)
T 3odt_A 124 KTAKVWKE--GSL----VYNLQAHNAS----------------------V------------------------W-DAKV 150 (313)
T ss_dssp SEEEEEET--TEE----EEEEECCSSC----------------------E------------------------E-EEEE
T ss_pred CCEEEEcC--CcE----EEecccCCCc----------------------e------------------------e-EEEE
Confidence 99999992 210 1111000000 0 0 0001
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEE
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~w 245 (383)
.+....++ ++++.++.|++||.. +....+... ......++. +.+.. .+++++.||.|++|
T Consensus 151 ~~~~~~~l-~~~~~d~~i~i~d~~--~~~~~~~~~---------~~~~i~~~~---~~~~~-----~~~~~~~dg~i~i~ 210 (313)
T 3odt_A 151 VSFSENKF-LTASADKTIKLWQND--KVIKTFSGI---------HNDVVRHLA---VVDDG-----HFISCSNDGLIKLV 210 (313)
T ss_dssp EETTTTEE-EEEETTSCEEEEETT--EEEEEECSS---------CSSCEEEEE---EEETT-----EEEEEETTSEEEEE
T ss_pred ccCCCCEE-EEEECCCCEEEEecC--ceEEEEecc---------CcccEEEEE---EcCCC-----eEEEccCCCeEEEE
Confidence 11112233 445668999999943 333333210 111222222 33321 38899999999999
Q ss_pred eCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEE
Q 016769 246 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 325 (383)
Q Consensus 246 dl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~ 325 (383)
|+++. .++..++.|..+|.++.|++++ .+++++.|+.|++||+..... ......+...+.+++|+|+++ ++++
T Consensus 211 d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~-~~~~ 283 (313)
T 3odt_A 211 DMHTG-DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL----KQVITLPAISIWSVDCMSNGD-IIVG 283 (313)
T ss_dssp ETTTC-CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE----EEEEECSSSCEEEEEECTTSC-EEEE
T ss_pred ECCch-hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCce----eEEEeccCceEEEEEEccCCC-EEEE
Confidence 99874 5577788899999999999988 689999999999999876532 223345667899999999998 5679
Q ss_pred eCCCcEEEEEcCCCceEE
Q 016769 326 GWDRRVRIYNYRKGSALA 343 (383)
Q Consensus 326 ~~dg~i~iwd~~~~~~~~ 343 (383)
+.||.|++||+.+++...
T Consensus 284 ~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 284 SSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp ETTSCEEEEESCGGGCCC
T ss_pred eCCCcEEEEeCCCCceee
Confidence 999999999998876543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-24 Score=194.46 Aligned_cols=252 Identities=16% Similarity=0.214 Sum_probs=172.6
Q ss_pred eeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEe
Q 016769 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~W 91 (383)
..+.+|.+.|++++|+|++++|++|+.|+.|++||+.+++.... ..| ...+.++.+.+..++..|++++.|++|++|
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 156 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI-AQH--DAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EEC--SSCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee-ccc--cCceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence 67899999999999999999999999999999999987765542 233 345778888322256789999999999999
Q ss_pred ecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCc
Q 016769 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPK 171 (383)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (383)
|+++++... .+..... +.. ..... .
T Consensus 157 d~~~~~~~~----~~~~~~~-----------------------~~~---------------------------~~~~~-~ 181 (368)
T 3mmy_A 157 DTRSSNPMM----VLQLPER-----------------------CYC---------------------------ADVIY-P 181 (368)
T ss_dssp CSSCSSCSE----EEECSSC-----------------------EEE---------------------------EEEET-T
T ss_pred ECCCCcEEE----EEecCCC-----------------------ceE---------------------------EEecC-C
Confidence 998764211 1110000 000 00001 1
Q ss_pred eeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC
Q 016769 172 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~ 251 (383)
.++ ++..++.+++||++............ ......+..+ .+........+++++.||.|++||++...
T Consensus 182 ~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~---~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 182 MAV-VATAERGLIVYQLENQPSEFRRIESP--------LKHQHRCVAI---FKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp EEE-EEEGGGCEEEEECSSSCEEEEECCCS--------CSSCEEEEEE---EECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred eeE-EEeCCCcEEEEEeccccchhhhcccc--------ccCCCceEEE---cccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence 222 33457899999998866443332110 1111222222 12211122238899999999999998743
Q ss_pred --Cceeeeecccc------------CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC
Q 016769 252 --IPLTAMKVHLE------------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 317 (383)
Q Consensus 252 --~~~~~~~~h~~------------~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p 317 (383)
.....++.|.. +|.++.|++++..+++++.|+.|++||++... .. ..+..+...+.+++|+|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~--~~--~~~~~~~~~v~~~~~s~ 325 (368)
T 3mmy_A 250 PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART--KL--KTSEQLDQPISACCFNH 325 (368)
T ss_dssp HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE--EE--EECCCCSSCEEEEEECT
T ss_pred ccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc--EE--EEecCCCCCceEEEECC
Confidence 23456666765 79999999999999999999999999997542 22 23445667899999999
Q ss_pred CCcEEEEEeCCCcEEEEEcC
Q 016769 318 DSKIAATAGWDRRVRIYNYR 337 (383)
Q Consensus 318 ~~~~l~s~~~dg~i~iwd~~ 337 (383)
++++|++++.|+..+.|++.
T Consensus 326 ~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 326 NGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp TSSCEEEEECCCSTTCGGGC
T ss_pred CCCeEEEEeccccccccccc
Confidence 99999999998866666553
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=197.67 Aligned_cols=252 Identities=13% Similarity=0.053 Sum_probs=162.2
Q ss_pred eeeecCCceeeEEEeCC---------CCeEEEecCCCeEEEeeCccccccccc-------ccccccceeeeeeecCCCCc
Q 016769 13 VLRGHRASVTDVCFHQT---------KPILFAGTTGGELRIWDTVQHRTVSSS-------WVHSAAHGIVSVATGPSIGL 76 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~---------~~~L~sgs~D~~v~vW~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 76 (383)
.|.+|.+.|.+++++++ +..|++|+.|+++|+|++......... ........+.+++|+| ++
T Consensus 68 ~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp--Dg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR--EG 145 (365)
T ss_dssp ECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT--TS
T ss_pred EccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC--CC
Confidence 57789999998877543 223445667889999997554321110 0111122356789998 46
Q ss_pred ceeE--ecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccc
Q 016769 77 NKVI--SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKE 154 (383)
Q Consensus 77 ~~l~--s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (383)
++++ +++.|++||+||++++... ..+. .. ..+
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~~----~~~~-------------~~----------~~V------------------- 179 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTEK----FEIE-------------TR----------GEV------------------- 179 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEEE----EEEE-------------CS----------SCC-------------------
T ss_pred CEEEEEECCCCCEEEEeECCCCcEE----EEeC-------------CC----------Cce-------------------
Confidence 6654 5668999999999876321 0000 00 000
Q ss_pred cCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEE
Q 016769 155 SNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 234 (383)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (383)
...+++++++ ++++ ++ ++.+++|+..++..+...... .+.....+ ..|.|+. ..++
T Consensus 180 ------~~v~fspdg~-~l~s-~s-~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~---v~fspdg----~~l~ 235 (365)
T 4h5i_A 180 ------KDLHFSTDGK-VVAY-IT-GSSLEVISTVTGSCIARKTDF--------DKNWSLSK---INFIADD----TVLI 235 (365)
T ss_dssp ------CEEEECTTSS-EEEE-EC-SSCEEEEETTTCCEEEEECCC--------CTTEEEEE---EEEEETT----EEEE
T ss_pred ------EEEEEccCCc-eEEe-cc-ceeEEEEEeccCcceeeeecC--------CCCCCEEE---EEEcCCC----CEEE
Confidence 0112345554 4443 34 346777887777655433211 11111111 2355542 3577
Q ss_pred EEeCCC----cEEEEeCCCCCC---ceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCC
Q 016769 235 AGYEDG----SILVWDIRNPGI---PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 307 (383)
Q Consensus 235 sg~~dg----~i~~wdl~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~ 307 (383)
+++.|+ .+++||+..... ....+..|..+|.+++|+|++..+++|+.|++|+|||++.. ... ...+..|.
T Consensus 236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~--~~~-~~~~~gH~ 312 (365)
T 4h5i_A 236 AASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL--SMS-KIFKQAHS 312 (365)
T ss_dssp EEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT--EEE-EEETTSSS
T ss_pred EEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC--cEE-EEecCccc
Confidence 787777 688899865432 12456778899999999999999999999999999998753 222 22245678
Q ss_pred CCeEEEEECCCCcEEEEEeCCCcEEEEEcCCC
Q 016769 308 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKG 339 (383)
Q Consensus 308 ~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~ 339 (383)
..|++++|+||+++||+||.|++|||||+...
T Consensus 313 ~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 313 FAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 89999999999999999999999999999643
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-23 Score=192.59 Aligned_cols=289 Identities=14% Similarity=0.158 Sum_probs=195.0
Q ss_pred CeeeeeecCCceeeEEEeCCCCeE-EEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCccee-EecccCCe
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGT 87 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L-~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~t 87 (383)
.+..+.+|. .+.+++|+|++++| ++++.|+.|++||..+++.+..+..+ ..+.+++++++ ++.+ ++++.|++
T Consensus 24 ~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~---~~v~~~~~spd--g~~l~~~~~~~~~ 97 (391)
T 1l0q_A 24 VTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG---SSPQGVAVSPD--GKQVYVTNMASST 97 (391)
T ss_dssp EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS---SSEEEEEECTT--SSEEEEEETTTTE
T ss_pred EEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC---CCccceEECCC--CCEEEEEECCCCE
Confidence 445666665 48999999999976 78889999999999887766554332 25778888884 5555 56678899
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
|++||+++++... .+.. .. . .....+.+
T Consensus 98 v~v~d~~~~~~~~----~~~~-------------~~----------~-------------------------~~~~~~s~ 125 (391)
T 1l0q_A 98 LSVIDTTSNTVAG----TVKT-------------GK----------S-------------------------PLGLALSP 125 (391)
T ss_dssp EEEEETTTTEEEE----EEEC-------------SS----------S-------------------------EEEEEECT
T ss_pred EEEEECCCCeEEE----EEeC-------------CC----------C-------------------------cceEEECC
Confidence 9999998763110 0000 00 0 00012334
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
+++ .++++++.++.|++||+++++.+..+..+. ....+ .+.++. ...+++++.|+.|++||+
T Consensus 126 dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-----------~~~~~---~~~~dg---~~l~~~~~~~~~v~~~d~ 187 (391)
T 1l0q_A 126 DGK-KLYVTNNGDKTVSVINTVTKAVINTVSVGR-----------SPKGI---AVTPDG---TKVYVANFDSMSISVIDT 187 (391)
T ss_dssp TSS-EEEEEETTTTEEEEEETTTTEEEEEEECCS-----------SEEEE---EECTTS---SEEEEEETTTTEEEEEET
T ss_pred CCC-EEEEEeCCCCEEEEEECCCCcEEEEEecCC-----------CcceE---EECCCC---CEEEEEeCCCCEEEEEEC
Confidence 443 454556778899999999988766554211 11111 244432 223467888999999999
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEE---cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEE-E
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG---ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA-A 323 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~---~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l-~ 323 (383)
++. .....+. +...+.++.+++++..+++++ .++.|++||++... .. ..+..+ ..+.+++|+|+++++ +
T Consensus 188 ~~~-~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~--~~--~~~~~~-~~~~~~~~s~dg~~l~~ 260 (391)
T 1l0q_A 188 VTN-SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK--IT--ARIPVG-PDPAGIAVTPDGKKVYV 260 (391)
T ss_dssp TTT-EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE--EE--EEEECC-SSEEEEEECTTSSEEEE
T ss_pred CCC-eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe--EE--EEEecC-CCccEEEEccCCCEEEE
Confidence 874 3344443 455788999999998888877 68999999997542 22 122222 457899999999877 6
Q ss_pred EEeCCCcEEEEEcCCCceEEEeccccccee---EEE------------EeCCC----------CEEEEEeCCCcEEEEeC
Q 016769 324 TAGWDRRVRIYNYRKGSALAILKYHHATCN---AVS------------FSSDC----------KLMASASEDSTVALWEL 378 (383)
Q Consensus 324 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~---~v~------------~spd~----------~~las~s~d~~i~~w~~ 378 (383)
+++.|++|++||+.+++.+..+..|..+.. .+. |+++. ..+...+.|..+++|++
T Consensus 261 s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 340 (391)
T 1l0q_A 261 ALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDF 340 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEEC
T ss_pred EcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEEC
Confidence 678899999999999998888776655421 122 32221 34667778999999999
Q ss_pred CCC
Q 016769 379 YPP 381 (383)
Q Consensus 379 ~~~ 381 (383)
.++
T Consensus 341 ~~g 343 (391)
T 1l0q_A 341 GDG 343 (391)
T ss_dssp SSS
T ss_pred CCC
Confidence 654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=211.86 Aligned_cols=260 Identities=9% Similarity=0.060 Sum_probs=173.3
Q ss_pred ecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccc---cceeeeeeecCCCCcceeEecccCCeEEEee
Q 016769 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA---AHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd 92 (383)
+|.+.|++++|||||.+||+++.||.|++||..+ ++..+. |.. ...+.+++|+| +++.|++|+.||+|++||
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP--DG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP--IESSIVVGNEDGELQFFS 157 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS--SSSCEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC--CCCEEEEEcCCCEEEEEE
Confidence 6789999999999999999999999999999654 333332 221 23588999999 578999999999999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
+.++... .+.+ ......+.... .... .....+++++|
T Consensus 158 ~~~~~l~-~~~~---------i~l~ti~~~~~-----gh~~-------------------------~V~sVawSPdg--- 194 (588)
T 2j04_A 158 IRKNSEN-TPEF---------YFESSIRLSDA-----GSKD-------------------------WVTHIVWYEDV--- 194 (588)
T ss_dssp CCCCTTT-CCCC---------EEEEEEECSCT-----TCCC-------------------------CEEEEEEETTE---
T ss_pred CCCCccc-cccc---------eeeeeeecccc-----cccc-------------------------cEEEEEEcCCc---
Confidence 9876321 1100 00000000000 0000 00112344555
Q ss_pred eeeccCCcceEEEEecCCCCee---eEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERC---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
+++ ++.|++|++||+..+... .++... +...+..++ |. + ..+++++ +++|++||+..
T Consensus 195 Laa-ss~D~tVrlWd~~~~~~~~~~~tL~~~---------h~~~V~sva---Fs-----g-~~LASa~-~~tIkLWd~~~ 254 (588)
T 2j04_A 195 LVA-ALSNNSVFSMTVSASSHQPVSRMIQNA---------SRRKITDLK---IV-----D-YKVVLTC-PGYVHKIDLKN 254 (588)
T ss_dssp EEE-EETTCCEEEECCCSSSSCCCEEEEECC---------CSSCCCCEE---EE-----T-TEEEEEC-SSEEEEEETTT
T ss_pred EEE-EeCCCeEEEEECCCCccccceeeeccc---------ccCcEEEEE---EE-----C-CEEEEEe-CCeEEEEECCC
Confidence 333 455899999999877632 233211 111122222 32 1 2466666 79999999986
Q ss_pred CCCceeeeeccccCeEEEEE--eCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC
Q 016769 250 PGIPLTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 327 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v~~~~~--~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~ 327 (383)
.. ......+|...+..+.+ ++++..+++++.||. ++|.++ .++|+||+..+++.
T Consensus 255 ~~-~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d--------------------~~~~spd~~l~a~~-- 310 (588)
T 2j04_A 255 YS-ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED--------------------ELHVTADNIIAPYL-- 310 (588)
T ss_dssp TE-EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS--------------------SEEEECCCSSHHHH--
T ss_pred Ce-EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec--------------------cEEECCCceEEEEc--
Confidence 43 22223379999999999 998888899998999 999765 14588999877764
Q ss_pred CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeC
Q 016769 328 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE 369 (383)
Q Consensus 328 dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~ 369 (383)
|+++++|+...+. +..+.+ ...|.+++|||||+.+|+++.
T Consensus 311 d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 311 EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 9999999985444 334544 667999999999999998873
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-24 Score=193.74 Aligned_cols=243 Identities=16% Similarity=0.186 Sum_probs=170.6
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..+.++++++ ++..|++++.|++|++||++++.. ..... .... .. ..+
T Consensus 12 ~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~----~~~~~---------~~~~-~~---------~~v------- 59 (342)
T 1yfq_A 12 DYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAK----NVDLL---------QSLR-YK---------HPL------- 59 (342)
T ss_dssp SCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTT----EEEEE---------EEEE-CS---------SCE-------
T ss_pred CcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCc----cccce---------eeee-cC---------Cce-------
Confidence 4688899998 468899999999999999976531 00000 0000 00 000
Q ss_pred ccccCccccccccCCccceecccCCCCCc-eeeeccCCcceEEEEec-CCCCeeeEeccCcCCCCCCcCCCCCceeeEEE
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPK-YMAVAGEQLSEVEIWDL-NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ 220 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~i~~Wdl-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 220 (383)
....+.+++ + ++ ++++.++.|++||+ ++++. ..+... .+...+.++.
T Consensus 60 ------------------~~~~~~~~~-~~~l-~~~~~dg~i~~wd~~~~~~~-~~~~~~--------~~~~~v~~l~-- 108 (342)
T 1yfq_A 60 ------------------LCCNFIDNT-DLQI-YVGTVQGEILKVDLIGSPSF-QALTNN--------EANLGICRIC-- 108 (342)
T ss_dssp ------------------EEEEEEESS-SEEE-EEEETTSCEEEECSSSSSSE-EECBSC--------CCCSCEEEEE--
T ss_pred ------------------EEEEECCCC-CcEE-EEEcCCCeEEEEEeccCCce-Eecccc--------CCCCceEEEE--
Confidence 001122333 3 34 44566899999999 87764 333210 0112222322
Q ss_pred eecCCCCCCceEEEEEeCCCcEEEEeCCC---------CCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEcc
Q 016769 221 AYLPSKSQGFVNVLAGYEDGSILVWDIRN---------PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 291 (383)
Q Consensus 221 ~~~~~~~~~~~~~~sg~~dg~i~~wdl~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~ 291 (383)
+.+ . ..+++++.|+.|++||+++ .. ++..+. |...+.++.+++++ +++++.|+.|++||++
T Consensus 109 -~~~-~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~ 178 (342)
T 1yfq_A 109 -KYG-D----DKLIAASWDGLIEVIDPRNYGDGVIAVKNL-NSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLP 178 (342)
T ss_dssp -EET-T----TEEEEEETTSEEEEECHHHHTTBCEEEEES-CSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESS
T ss_pred -eCC-C----CEEEEEcCCCeEEEEcccccccccccccCC-eeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECC
Confidence 333 1 2588999999999999875 32 334444 78899999999876 8999999999999998
Q ss_pred C-CCCeeEEeeeeecCCCCeEEEEECC-CCcEEEEEeCCCcEEEEEcCCC------ceEEEeccccc---------ceeE
Q 016769 292 H-STGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRRVRIYNYRKG------SALAILKYHHA---------TCNA 354 (383)
Q Consensus 292 ~-~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~h~~---------~v~~ 354 (383)
. ...... .....+...+.+++|+| +++++++++.||.|++|+++.. +....+..|.. .|.+
T Consensus 179 ~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 256 (342)
T 1yfq_A 179 LCEDDNGT--IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256 (342)
T ss_dssp CCTTCCCE--EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE
T ss_pred ccccccce--eeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEE
Confidence 6 332221 12233456799999999 9999999999999999999876 77778888866 9999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 355 VSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 355 v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
++|+|++++|++|+.||.|++||+..
T Consensus 257 ~~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 257 IEFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp EEECTTTCCEEEEETTSCEEEEETTT
T ss_pred EEEcCCCCEEEEecCCceEEEEcCcc
Confidence 99999999999999999999999864
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=191.80 Aligned_cols=183 Identities=13% Similarity=0.100 Sum_probs=140.0
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCC--
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-- 250 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~-- 250 (383)
++++|+.|++|++||+++++.+..+... .+.+.. +.|. +++++.|++|++|+....
T Consensus 50 ~l~sg~~Dg~v~iwd~~~~~~~~~~~~~-~v~~~~--------------~~~~-------~~s~s~D~~i~~w~~~~~~~ 107 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQLKDSKTITTITTP-NPRTGG--------------EHPA-------IISRGPCNRLLLLYPGNQIT 107 (343)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEEEE-CCCTTC--------------CCCS-------EEEECSTTEEEEEETTTEEE
T ss_pred EEEEECCCCcEEEEECCCCcEEEEEecC-Cceeee--------------eCCc-------eEEecCCCeEEEEEccCceE
Confidence 5567788999999999998877666421 111111 1221 788999999999976521
Q ss_pred ------CCceeee-eccccCeEEEEEeC--CCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcE
Q 016769 251 ------GIPLTAM-KVHLEPVLCLSIDE--SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 321 (383)
Q Consensus 251 ------~~~~~~~-~~h~~~v~~~~~~~--~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 321 (383)
...+..+ ..|.++|.++.+++ ++..+++++.|+.|++||++.... ... ....+...+.+++|+|++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~-~~~~~~~~i~~~~~~pdg~~ 184 (343)
T 3lrv_A 108 ILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ--YIV-HSAKSDVEYSSGVLHKDSLL 184 (343)
T ss_dssp EEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE--EEE-ECCCSSCCCCEEEECTTSCE
T ss_pred EeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE--EEE-EecCCCCceEEEEECCCCCE
Confidence 1112222 25668899999999 889999999999999999975442 211 11223346999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceE-EEecc-cccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 322 AATAGWDRRVRIYNYRKGSAL-AILKY-HHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 322 l~s~~~dg~i~iwd~~~~~~~-~~~~~-h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
|++|+.||+|++||+++++.+ ..+.. |...|.+++|+|++++|++++.| .|++||+...
T Consensus 185 lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~ 245 (343)
T 3lrv_A 185 LALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKD 245 (343)
T ss_dssp EEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSS
T ss_pred EEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCC
Confidence 999999999999999999887 77888 99999999999999999999955 9999999643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-22 Score=187.10 Aligned_cols=258 Identities=11% Similarity=0.051 Sum_probs=167.4
Q ss_pred eeeeecCCceeeEEEeCCCCeE-EEecCCCeEEEeeCc--ccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 12 AVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~~~~L-~sgs~D~~v~vW~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
..+.+|.+.|++++|+|++++| ++|+.|+.|+|||+. +++++..+..+.....+.+++++| ++..|++++.|+.+
T Consensus 96 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 96 LGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--DDTTVIIADKFGDV 173 (450)
T ss_dssp ----CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--TSSEEEEEETTSEE
T ss_pred CCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--CCCEEEEEeCCCcE
Confidence 3456889999999999999996 999999999999998 666665554333345678899998 46889999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++|++.++.....+...+..+.. .+ ....+.++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~h~~----------------------~v-------------------------~~~~~sp~ 206 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQEPILGHVS----------------------ML-------------------------TDVHLIKD 206 (450)
T ss_dssp EEEETTSCCCSSCCCCCSEECSS----------------------CE-------------------------EEEEEEEC
T ss_pred EEEecCCcccccccceeeecccC----------------------ce-------------------------EEEEEcCC
Confidence 99999876432100000000000 00 00112233
Q ss_pred --CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 169 --GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 169 --~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
+.+++ ++++.|++|++||+++++.+..+.. .+...+.++. |. + ...+++|+.|++|++||
T Consensus 207 ~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~---------~h~~~v~~~~---~s-d----~~~l~s~~~d~~v~vwd 268 (450)
T 2vdu_B 207 SDGHQFI-ITSDRDEHIKISHYPQCFIVDKWLF---------GHKHFVSSIC---CG-K----DYLLLSAGGDDKIFAWD 268 (450)
T ss_dssp TTSCEEE-EEEETTSCEEEEEESCTTCEEEECC---------CCSSCEEEEE---EC-S----TTEEEEEESSSEEEEEE
T ss_pred CCCCcEE-EEEcCCCcEEEEECCCCceeeeeec---------CCCCceEEEE---EC-C----CCEEEEEeCCCeEEEEE
Confidence 12344 4566789999999998887655321 1112222222 32 1 23688999999999999
Q ss_pred CCCCCCceeeeecc-------------------------ccCeEEEEEeCCCCceEEEE-cCCcEEEEEc-cCCCCeeEE
Q 016769 247 IRNPGIPLTAMKVH-------------------------LEPVLCLSIDESCNGGISGG-ADQKIVLYNL-DHSTGSCVI 299 (383)
Q Consensus 247 l~~~~~~~~~~~~h-------------------------~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl-~~~~~~~~~ 299 (383)
+++.. .+..+..+ ...|..+.+.+++..+++++ .|+.|++|++ +........
T Consensus 269 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~ 347 (450)
T 2vdu_B 269 WKTGK-NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLAL 347 (450)
T ss_dssp TTTCC-EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEE
T ss_pred CCCCc-EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceee
Confidence 98743 34444422 24688999999999998888 8999999999 222222222
Q ss_pred eeeeecCCCCeEEEEECCCCcEEEEEeC------CCcEEEEEcCC
Q 016769 300 KKEINLERPGISGTSIRPDSKIAATAGW------DRRVRIYNYRK 338 (383)
Q Consensus 300 ~~~~~~~~~~i~~~~~~p~~~~l~s~~~------dg~i~iwd~~~ 338 (383)
...+..+ ..+.+++|+|++.++++++. ++.|.+|.++.
T Consensus 348 ~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 348 KQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 3334444 67999999996544444343 55588888753
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=177.69 Aligned_cols=278 Identities=14% Similarity=0.155 Sum_probs=152.8
Q ss_pred CCeeeeeecCCceeeEEEeC--CCCeEEEecCCCeEEEeeCcccc---------cccccccccccceeeeeeecCCCCcc
Q 016769 9 DPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHR---------TVSSSWVHSAAHGIVSVATGPSIGLN 77 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~--~~~~L~sgs~D~~v~vW~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (383)
++...+.+|.+.|++++|+| ++++|++|+.|+.|++||+..+. .+..+..| ...+.++.+.+...+.
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~ 125 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDS--KGSLYSVKFAPAHLGL 125 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCC--SSCEEEEEECCGGGCS
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeeccc--CCceeEEEEcCCCCCc
Confidence 45677899999999999999 69999999999999999987653 22222222 3457888888842267
Q ss_pred eeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCC
Q 016769 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNR 157 (383)
Q Consensus 78 ~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (383)
.+++++.|++|++||+.++.......... ...... ..... ...
T Consensus 126 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--------~~~~~~------~~~~~--------------------~~~--- 168 (351)
T 3f3f_A 126 KLACLGNDGILRLYDALEPSDLRSWTLTS--------EMKVLS------IPPAN--------------------HLQ--- 168 (351)
T ss_dssp EEEEEETTCEEEEEECSSTTCTTCCEEEE--------EEESCS------CCCSS--------------------CSC---
T ss_pred EEEEecCCCcEEEecCCChHHhccccccc--------cccccc------cccCC--------------------ccc---
Confidence 89999999999999998775432111000 000000 00000 000
Q ss_pred ccceecccCCC--CCceeeeccCCcceEEEEecCCCCe--eeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEE
Q 016769 158 SFEIIDDVPAE--GPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 233 (383)
Q Consensus 158 ~~~~~~~~~~~--~~~~~~~~g~~~~~i~~Wdl~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (383)
... ...+.+. ...+++ +++.++.+.+|+...+.. +..+.. +...+.++ .+.|........+
T Consensus 169 ~~~-~~~~~p~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~~~i~~~---~~~p~~~~~~~~l 233 (351)
T 3f3f_A 169 SDF-CLSWCPSRFSPEKLA-VSALEQAIIYQRGKDGKLHVAAKLPG----------HKSLIRSI---SWAPSIGRWYQLI 233 (351)
T ss_dssp CCE-EEEECCCSSSCCEEE-EEETTEEEEEEECTTSCEEEEEECCC----------CCSCEEEE---EECCCSSCSSEEE
T ss_pred cee-EEEeccCCCCCcEEE-EecCCCcEEEEccCCCceeeeeecCC----------CCcceeEE---EECCCCCCcceEE
Confidence 000 0111121 123444 455677888888776654 222221 11222222 3455421112468
Q ss_pred EEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEE----EEcCCcEEEEEccCCCCeeEEeeeeecCCCC
Q 016769 234 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS----GGADQKIVLYNLDHSTGSCVIKKEINLERPG 309 (383)
Q Consensus 234 ~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s----~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~ 309 (383)
++|+.||.|++||++....... ...+.................. +.....+.+|+.. ..........+...
T Consensus 234 ~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~h~~~ 308 (351)
T 3f3f_A 234 ATGCKDGRIRIFKITEKLSPLA-SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNL----QVELLSEHDDHNGE 308 (351)
T ss_dssp EEEETTSCEEEEEEEECC----------------------------------------CCSE----EEEEEEEECTTSSC
T ss_pred EEEcCCCeEEEEeCCCCcCccc-cCCcccceeccCCCcccccccccccccccceeeeecccc----cccEEEEEeccccc
Confidence 8999999999999986433221 1112222222222222222222 2223333444321 12222344567778
Q ss_pred eEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEe
Q 016769 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL 345 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 345 (383)
|++++|+|++++|++++.||+|++||+.+++.+..+
T Consensus 309 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 309 VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 999999999999999999999999999988665544
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=9.1e-23 Score=181.86 Aligned_cols=97 Identities=9% Similarity=-0.006 Sum_probs=61.3
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeee-----eccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCC
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAM-----KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 307 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~ 307 (383)
+++|+.|++|++||.+++ ..+..+ .+|...+.+..++ +..+++++.|++|+|||+....... .+..+.
T Consensus 253 laSGs~D~tIklWd~~tg-k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~----tL~gH~ 325 (356)
T 2w18_A 253 ESLRSPVFQLIVINPKTT-LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTA----LLPPVS 325 (356)
T ss_dssp -----CCEEEEEEETTTT-EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEE----EECCC-
T ss_pred eeccCCCcEEEEEECCCC-EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEE----EecCCC
Confidence 445666777777776653 222222 2444443333333 5667899999999999997654222 233344
Q ss_pred CCe-EEEEECCCCcEEEEEeCCCcEEEEEc
Q 016769 308 PGI-SGTSIRPDSKIAATAGWDRRVRIYNY 336 (383)
Q Consensus 308 ~~i-~~~~~~p~~~~l~s~~~dg~i~iwd~ 336 (383)
..+ ..++|+||+++|++|+.|++|+|||+
T Consensus 326 ~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 326 DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 444 46899999999999999999999996
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-22 Score=183.79 Aligned_cols=196 Identities=19% Similarity=0.247 Sum_probs=148.7
Q ss_pred CCCCCceeeeccCCcceEEEEecCC--CCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNT--AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
.+++. ++ ++++.++.|++||++. .+.+..+.. +...+.++. |.+.. ....+++|+.||.|+
T Consensus 20 s~~~~-~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~----------h~~~v~~~~---~~~~~--~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 20 DYYGK-RL-ATCSSDKTIKIFEVEGETHKLIDTLTG----------HEGPVWRVD---WAHPK--FGTILASCSYDGKVL 82 (379)
T ss_dssp CSSSS-EE-EEEETTSCEEEEEEETTEEEEEEEECC----------CSSCEEEEE---ECCGG--GCSEEEEEETTSCEE
T ss_pred cCCCC-EE-EEEECCCcEEEEecCCCcceeeeEecC----------CCCcEEEEE---eCCCC--CCCEEEEeccCCEEE
Confidence 34443 44 4556689999999984 334444432 112222222 33221 123688999999999
Q ss_pred EEeCCCCC-CceeeeeccccCeEEEEEeCC--CCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC---
Q 016769 244 VWDIRNPG-IPLTAMKVHLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP--- 317 (383)
Q Consensus 244 ~wdl~~~~-~~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p--- 317 (383)
+||+++.. .....+..|..+|.++.|+++ +..+++++.|+.|++||+......... ....+...+.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI--IIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE--EEECCTTCEEEEEECCCC-
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE--EecCCCCceEEEEEcCccc
Confidence 99998743 145667779999999999998 888999999999999999865432222 3345667899999999
Q ss_pred ----------CCcEEEEEeCCCcEEEEEcCCCc----eEEEecccccceeEEEEeCC---CCEEEEEeCCCcEEEEeCCC
Q 016769 318 ----------DSKIAATAGWDRRVRIYNYRKGS----ALAILKYHHATCNAVSFSSD---CKLMASASEDSTVALWELYP 380 (383)
Q Consensus 318 ----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~v~~spd---~~~las~s~d~~i~~w~~~~ 380 (383)
++++|++++.|++|++||+++++ ....+.+|...|.+++|+|+ +++|++++.|+.|++||+..
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 69999999999999999998764 34577889999999999999 89999999999999999864
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-21 Score=186.61 Aligned_cols=304 Identities=12% Similarity=0.033 Sum_probs=191.8
Q ss_pred CCeeeee-ecCCceeeEEEeCCCCeEEEecCCCeEEEeeC--cccccccccccccccceeeeeeecC----CCCcceeEe
Q 016769 9 DPVAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGP----SIGLNKVIS 81 (383)
Q Consensus 9 ~~~~~l~-gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~s 81 (383)
+++.++. ||. +..++|+|||++|++++.|++|++||+ .+++++..+.. ......++++| + ++++++
T Consensus 170 ~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~---g~~p~~va~sp~~~~d--g~~l~v 242 (543)
T 1nir_A 170 KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI---GIEARSVESSKFKGYE--DRYTIA 242 (543)
T ss_dssp CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC---CSEEEEEEECCSTTCT--TTEEEE
T ss_pred eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec---CCCcceEEeCCCcCCC--CCEEEE
Confidence 3456666 444 889999999999999999999999999 66666555432 23456778887 4 577777
Q ss_pred cc-cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccc
Q 016769 82 QG-RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFE 160 (383)
Q Consensus 82 ~~-~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
++ .+++|++||..+++... .+..... ... . ...... .+ .
T Consensus 243 ~~~~~~~v~v~D~~t~~~~~----~i~~~g~----------~~~------~----~~~~~~--------------~~--v 282 (543)
T 1nir_A 243 GAYWPPQFAIMDGETLEPKQ----IVSTRGM----------TVD------T----QTYHPE--------------PR--V 282 (543)
T ss_dssp EEEESSEEEEEETTTCCEEE----EEECCEE----------CSS------S----CCEESC--------------CC--E
T ss_pred EEccCCeEEEEeccccccce----eecccCc----------ccC------c----cccccC--------------Cc--e
Confidence 66 68999999987764211 1110000 000 0 000000 00 0
Q ss_pred eecccCCCCCceeeeccCCcceEEEEecCCCCeee--EeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeC
Q 016769 161 IIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT--RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 238 (383)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~ 238 (383)
....++++++. ++++...++.|.+||+.+.+.+. .+...... .. . .|.|+ +...++++..
T Consensus 283 ~~i~~s~~~~~-~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~---------~~--~---~~spd---g~~l~va~~~ 344 (543)
T 1nir_A 283 AAIIASHEHPE-FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFL---------HD--G---GWDSS---HRYFMTAANN 344 (543)
T ss_dssp EEEEECSSSSE-EEEEETTTTEEEEEECTTSSSCEEEEEECCSSC---------CC--E---EECTT---SCEEEEEEGG
T ss_pred EEEEECCCCCE-EEEEECCCCeEEEEEecCCCcceeEEeccCcCc---------cC--c---eECCC---CCEEEEEecC
Confidence 00112344443 44555667899999998876443 33211000 00 1 23333 2223445667
Q ss_pred CCcEEEEeCCCCCCceeeeec----cccCeEEEEEeCC-CCceEEEE-cCCcEEEEEccCCCC---eeEEeeeeecCCCC
Q 016769 239 DGSILVWDIRNPGIPLTAMKV----HLEPVLCLSIDES-CNGGISGG-ADQKIVLYNLDHSTG---SCVIKKEINLERPG 309 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~~----h~~~v~~~~~~~~-~~~~~s~~-~d~~i~~wdl~~~~~---~~~~~~~~~~~~~~ 309 (383)
+++|.+||+++. ..+..+.. |......+ ++++ +..++++. .|++|.+||++.... .......+..+..+
T Consensus 345 ~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~ 422 (543)
T 1nir_A 345 SNKVAVIDSKDR-RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG 422 (543)
T ss_dssp GTEEEEEETTTT-EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred CCeEEEEECCCC-eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence 899999999874 44555553 44333333 4666 44455654 589999999986221 01222345555567
Q ss_pred eEEEEECCCCcEEEEEe-------CCCcEEEEEcCCCceE-EEe--------cccccceeEEEEeCCCCEEEEEe-----
Q 016769 310 ISGTSIRPDSKIAATAG-------WDRRVRIYNYRKGSAL-AIL--------KYHHATCNAVSFSSDCKLMASAS----- 368 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~-------~dg~i~iwd~~~~~~~-~~~--------~~h~~~v~~v~~spd~~~las~s----- 368 (383)
+..+.++|++++|++++ .+++|.+||+.+++.. ..+ ..+.+.+..++|+|||+.|..+.
T Consensus 423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~ 502 (543)
T 1nir_A 423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKN 502 (543)
T ss_dssp CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTT
T ss_pred ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCC
Confidence 78899999999999987 3789999999988766 443 35678899999999999877652
Q ss_pred CCCcEEEEeCC
Q 016769 369 EDSTVALWELY 379 (383)
Q Consensus 369 ~d~~i~~w~~~ 379 (383)
.|+.|.|||..
T Consensus 503 ~~~~i~v~D~~ 513 (543)
T 1nir_A 503 DSSALVVVDDK 513 (543)
T ss_dssp SCCEEEEEETT
T ss_pred CCCeEEEEECC
Confidence 48999999974
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-21 Score=182.66 Aligned_cols=220 Identities=19% Similarity=0.270 Sum_probs=158.2
Q ss_pred CCCeeeeeecCCceeeEEEeCCCC-eEEEecCCCeEEEeeCcccccc-------cccccccccceeeeeeecCCCCccee
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTV-------SSSWVHSAAHGIVSVATGPSIGLNKV 79 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~-~L~sgs~D~~v~vW~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (383)
..+..++.+|.+.|++|+|+|+++ +|++|+.||.|++|++...... ..+..| ...+.++++.+. ++..|
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~-~~~~l 247 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH--TAVVEDVAWHLL-HESLF 247 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCC--SSCEEEEEECSS-CTTEE
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCC--CCCEeeeEEeCC-CCCEE
Confidence 567889999999999999999998 9999999999999998763221 111122 235778888874 35778
Q ss_pred EecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCcc
Q 016769 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSF 159 (383)
Q Consensus 80 ~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (383)
++++.|++|++||+.++.... +...
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~-~~~~------------------------------------------------------ 272 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSK-PSHT------------------------------------------------------ 272 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSS-CSEE------------------------------------------------------
T ss_pred EEEeCCCeEEEEECCCCCCCc-ceeE------------------------------------------------------
Confidence 899999999999987542100 0000
Q ss_pred ceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCC
Q 016769 160 EIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 239 (383)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~d 239 (383)
+- + ....+ .++ .|.|. +...+++|+.|
T Consensus 273 --------------~~-~-~~~~v-------------------------------~~i---~~~p~---~~~~l~tg~~d 299 (430)
T 2xyi_A 273 --------------VD-A-HTAEV-------------------------------NCL---SFNPY---SEFILATGSAD 299 (430)
T ss_dssp --------------EE-C-CSSCE-------------------------------EEE---EECSS---CTTEEEEEETT
T ss_pred --------------ee-c-CCCCe-------------------------------EEE---EeCCC---CCCEEEEEeCC
Confidence 00 0 00000 000 12221 11146789999
Q ss_pred CcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCc-eEEEEcCCcEEEEEccCCCCe----------eEEeeeeecCCC
Q 016769 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGS----------CVIKKEINLERP 308 (383)
Q Consensus 240 g~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~~~d~~i~~wdl~~~~~~----------~~~~~~~~~~~~ 308 (383)
|+|++||+++...++..+..|..+|.++.|++++.. +++++.|+.|++||+...... ..+......+..
T Consensus 300 g~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 379 (430)
T 2xyi_A 300 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379 (430)
T ss_dssp SEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS
T ss_pred CeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC
Confidence 999999999866677888899999999999998864 789999999999999762210 012223345567
Q ss_pred CeEEEEECCCCc-EEEEEeCCCcEEEEEcCC
Q 016769 309 GISGTSIRPDSK-IAATAGWDRRVRIYNYRK 338 (383)
Q Consensus 309 ~i~~~~~~p~~~-~l~s~~~dg~i~iwd~~~ 338 (383)
.+.+++|+|+++ +|++++.||+|++|++..
T Consensus 380 ~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 380 KISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 799999999999 999999999999999964
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-21 Score=185.25 Aligned_cols=288 Identities=11% Similarity=0.056 Sum_probs=191.3
Q ss_pred EEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeec--CCCCCCCCC
Q 016769 25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI--ENGGLSSNP 102 (383)
Q Consensus 25 ~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~--~~~~~~~~~ 102 (383)
+|+|++.++++++.|++|++||..+++++..+..+. .+..+.++| ++++|++++.|++|++||+ ++++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~---~~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~---- 214 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY---AVHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTK---- 214 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECST---TEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEE----
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCc---ccceEEECC--CCCEEEEECCCCeEEEEECcCCCCcE----
Confidence 489999999999999999999998887776654222 255778888 5788999999999999999 54421
Q ss_pred eeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC----CCCceeeeccC
Q 016769 103 SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA----EGPKYMAVAGE 178 (383)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~ 178 (383)
...+..+. . .....+++ ++ ++++++..
T Consensus 215 ~~~i~~g~----------~--------------------------------------p~~va~sp~~~~dg-~~l~v~~~ 245 (543)
T 1nir_A 215 VAEIKIGI----------E--------------------------------------ARSVESSKFKGYED-RYTIAGAY 245 (543)
T ss_dssp EEEEECCS----------E--------------------------------------EEEEEECCSTTCTT-TEEEEEEE
T ss_pred EEEEecCC----------C--------------------------------------cceEEeCCCcCCCC-CEEEEEEc
Confidence 00110000 0 00012334 44 45666665
Q ss_pred CcceEEEEecCCCCeeeEeccCcC-CCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCce-ee
Q 016769 179 QLSEVEIWDLNTAERCTRLHQNSC-GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TA 256 (383)
Q Consensus 179 ~~~~i~~Wdl~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~-~~ 256 (383)
.+++|.+||..+.+.+..+.-... .....+.+..+.. .+ .+.+. +...+++...+++|.+||+.+..... ..
T Consensus 246 ~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~--~i-~~s~~---~~~~~vs~~~~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 246 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVA--AI-IASHE---HPEFIVNVKETGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEE--EE-EECSS---SSEEEEEETTTTEEEEEECTTSSSCEEEE
T ss_pred cCCeEEEEeccccccceeecccCcccCccccccCCceE--EE-EECCC---CCEEEEEECCCCeEEEEEecCCCcceeEE
Confidence 678999999999888776643110 0000111111111 11 23332 23457778899999999998754322 12
Q ss_pred eeccccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCCeeEEeeee--ecCCCCeEEEEECCC-CcEEEEEe-CCCcE
Q 016769 257 MKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEI--NLERPGISGTSIRPD-SKIAATAG-WDRRV 331 (383)
Q Consensus 257 ~~~h~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~~--~~~~~~i~~~~~~p~-~~~l~s~~-~dg~i 331 (383)
+ .+...+..+.|+++++++++++ .+++|.+||+.... ....... ..+.+....+ ++|+ +++++++. .|++|
T Consensus 320 i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~--l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V 395 (543)
T 1nir_A 320 I-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR--LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSI 395 (543)
T ss_dssp E-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE--EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEE
T ss_pred e-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe--EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceE
Confidence 3 3455677899999999876554 58999999987543 3221111 1122222222 4677 56667665 68999
Q ss_pred EEEEcCC-------CceEEEecccccceeEEEEeCCCCEEEEEe-------CCCcEEEEeCCC
Q 016769 332 RIYNYRK-------GSALAILKYHHATCNAVSFSSDCKLMASAS-------EDSTVALWELYP 380 (383)
Q Consensus 332 ~iwd~~~-------~~~~~~~~~h~~~v~~v~~spd~~~las~s-------~d~~i~~w~~~~ 380 (383)
.+||+++ .+.+.++..|...+..++||||+++|.+++ .+++|.+||+..
T Consensus 396 ~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 396 SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp EEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred EEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC
Confidence 9999988 888999999988889999999999999987 278999999864
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=187.16 Aligned_cols=246 Identities=15% Similarity=0.132 Sum_probs=137.3
Q ss_pred eeeeeecCCceeeEEEeC--------CCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEec
Q 016769 11 VAVLRGHRASVTDVCFHQ--------TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~--------~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (383)
..++.||++.|++|+|+| |+++|||||.|++|||||+.++.++..+..|. ..+.+++|.|. +...|+++
T Consensus 129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~--~~v~~v~~~p~-~~~~l~~~ 205 (393)
T 4gq1_A 129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLS--SPGISVQFRPS-NPNQLIVG 205 (393)
T ss_dssp ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECS--SCEEEEEEETT-EEEEEEEE
T ss_pred ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCC--CCcEEEEECCC-CCceEEec
Confidence 446789999999999998 88999999999999999997766655544443 45789999984 33578999
Q ss_pred ccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCcccee
Q 016769 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEII 162 (383)
Q Consensus 83 ~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (383)
+.|++|++||+.++.......... .. ................ .....+... ...+
T Consensus 206 ~~d~~v~~wd~~t~~~~~~~~~~~-~~-~~~~~~s~~~~~~~~~--------------------~~~~~~~~~---v~~v 260 (393)
T 4gq1_A 206 ERNGNIRIFDWTLNLSAEENSQTE-LV-KNPWLLTLNTLPLVNT--------------------CHSSGIASS---LANV 260 (393)
T ss_dssp ETTSEEEEEETTCCC-----------C-SCCCSEEEESGGGC--------------------------CCSSS---CSEE
T ss_pred CCCCEEEEEECCCCcccccccccC-Cc-ccceEEecccccceee--------------------eeccccccc---ceee
Confidence 999999999998774321100000 00 0000000000000000 000000000 0001
Q ss_pred cccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCc-CCCCCCcCCCCCce-----eeEEEeecCCCCCCceEEEEE
Q 016769 163 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS-CGGSPNFSSKGRGM-----CMAVQAYLPSKSQGFVNVLAG 236 (383)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~-~~~s~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~sg 236 (383)
.-..+++. .+++++.|+++++||+.+......+.... ......+.+..... .... .+.+. .+...+++|
T Consensus 261 ~~~~~dg~--~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~sg 335 (393)
T 4gq1_A 261 RWIGSDGS--GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGA-CPHPR--YMDYFATAH 335 (393)
T ss_dssp EEETTTTC--EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCC-EECSS--CTTEEEEEE
T ss_pred eeecCCCC--EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeE-EEccC--CCCEEEEEE
Confidence 11124444 33456778999999998877554443211 11111111110000 0000 12221 233457788
Q ss_pred eCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEcc
Q 016769 237 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 291 (383)
Q Consensus 237 ~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~ 291 (383)
+.||+|++||+.++. ....+..|..+|.+++|+|+++.+++++.|| +.+|.|.
T Consensus 336 s~Dg~V~lwd~~~~~-~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 336 SQHGLIQLINTYEKD-SNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TTTTEEEEEETTCTT-CCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCCEEEEEECCCCc-EEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 999999999998754 4555667888999999999999999887655 7777654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-20 Score=175.76 Aligned_cols=288 Identities=12% Similarity=0.083 Sum_probs=184.5
Q ss_pred ecCCceeeEE---EeCCCCeEE--------------EecCCCeEEEeeCcc--c--ccccccccccccceeeeeeecCCC
Q 016769 16 GHRASVTDVC---FHQTKPILF--------------AGTTGGELRIWDTVQ--H--RTVSSSWVHSAAHGIVSVATGPSI 74 (383)
Q Consensus 16 gH~~~V~~v~---f~~~~~~L~--------------sgs~D~~v~vW~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~ 74 (383)
.+...++.++ |+|++..++ +++.|+.++||.+.. + +.+..+.. ...+.++++++
T Consensus 58 ~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~s~-- 132 (433)
T 3bws_A 58 DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKT---GFQPKSVRFID-- 132 (433)
T ss_dssp ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEEC---SSCBCCCEESS--
T ss_pred ccCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcC---CCCceEEEEeC--
Confidence 3456677888 888876655 344555445555432 2 22222211 12345777877
Q ss_pred CcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccc
Q 016769 75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKE 154 (383)
Q Consensus 75 ~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (383)
++..+++++.|++|++||+++++... .+ .... . .....
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~----~~-------------~~~~-~---~~~~~--------------------- 170 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVR----LS-------------PPEK-Y---KKKLG--------------------- 170 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEE----EC-------------CCHH-H---HTTCC---------------------
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEee----ec-------------Cccc-c---cccCC---------------------
Confidence 45777888999999999998764211 00 0000 0 00000
Q ss_pred cCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEE
Q 016769 155 SNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 234 (383)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (383)
......+++++ + ++++++.++.|++||+++++.+..+..+. ....++ .+.+. +...++
T Consensus 171 ----~v~~~~~~~~~-~-~~~s~~~d~~v~~~d~~~~~~~~~~~~~~----------~~~~~~---~~~~~---~~~l~~ 228 (433)
T 3bws_A 171 ----FVETISIPEHN-E-LWVSQMQANAVHVFDLKTLAYKATVDLTG----------KWSKIL---LYDPI---RDLVYC 228 (433)
T ss_dssp ----EEEEEEEGGGT-E-EEEEEGGGTEEEEEETTTCCEEEEEECSS----------SSEEEE---EEETT---TTEEEE
T ss_pred ----ceeEEEEcCCC-E-EEEEECCCCEEEEEECCCceEEEEEcCCC----------CCeeEE---EEcCC---CCEEEE
Confidence 00001122222 2 44556678999999999988776664211 111222 24443 222345
Q ss_pred EEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEE--------cCCcEEEEEccCCCCeeEEeeeeecC
Q 016769 235 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG--------ADQKIVLYNLDHSTGSCVIKKEINLE 306 (383)
Q Consensus 235 sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~--------~d~~i~~wdl~~~~~~~~~~~~~~~~ 306 (383)
+++.|+.|++||+++. .....+..+ ..+.++.+++++..+++++ .|+.|++||+.... .... . .+
T Consensus 229 ~~~~~~~i~~~d~~~~-~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~--~-~~ 301 (433)
T 3bws_A 229 SNWISEDISVIDRKTK-LEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK--LIDT--I-GP 301 (433)
T ss_dssp EETTTTEEEEEETTTT-EEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE--EEEE--E-EE
T ss_pred EecCCCcEEEEECCCC-cEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc--EEee--c-cC
Confidence 6678999999999874 334455443 3588999999998888877 48899999997542 2211 1 12
Q ss_pred CCCeEEEEECCCCcE-EEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeC---------------C
Q 016769 307 RPGISGTSIRPDSKI-AATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE---------------D 370 (383)
Q Consensus 307 ~~~i~~~~~~p~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~---------------d 370 (383)
...+.+++|+|++++ +++++.|++|++||+.+++....+. +...+.+++|+|||++|++++. |
T Consensus 302 ~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~d 380 (433)
T 3bws_A 302 PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVL 380 (433)
T ss_dssp EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSC
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccc
Confidence 236889999999975 5666899999999999998887775 7778999999999998888877 5
Q ss_pred CcEEEEeCCC
Q 016769 371 STVALWELYP 380 (383)
Q Consensus 371 ~~i~~w~~~~ 380 (383)
|.|++||+..
T Consensus 381 g~v~~~d~~~ 390 (433)
T 3bws_A 381 GKVYVIDTTT 390 (433)
T ss_dssp CEEEEEETTT
T ss_pred eEEEEEECCC
Confidence 7999999853
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-21 Score=191.86 Aligned_cols=197 Identities=18% Similarity=0.236 Sum_probs=149.9
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCC--CeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcE
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 242 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i 242 (383)
++++++ ++ ++|+.|+.|++||+.++ +.+..+.. +.+.+.++ .|.+.. ....+++|+.||+|
T Consensus 17 ~s~dg~-~l-atg~~dg~I~vwd~~~~~~~~~~~l~~----------h~~~V~~l---~~s~~~--~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 17 LDYYGK-RL-ATCSSDKTIKIFEVEGETHKLIDTLTG----------HEGPVWRV---DWAHPK--FGTILASCSYDGKV 79 (753)
T ss_dssp CCSSSC-CE-EEEETTTEEEEEEEETTEEEEEEEECC----------CSSCEEEE---EECCTT--SCSEEEEEETTSCE
T ss_pred ECCCCC-eE-EEEECCCcEEEEecCCCCCccceeccC----------CcCceEEE---EecCCC--CCCEEEEEeCCCeE
Confidence 334444 33 45567899999999843 33444432 12222232 243321 12368899999999
Q ss_pred EEEeCCCCC-CceeeeeccccCeEEEEEeCC--CCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC--
Q 016769 243 LVWDIRNPG-IPLTAMKVHLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-- 317 (383)
Q Consensus 243 ~~wdl~~~~-~~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p-- 317 (383)
++||+++.. .....+..|..+|.++.|+++ +..+++++.|+.|++||+........ .....+...+.+++|+|
T Consensus 80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~--~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP--IIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC--EEEECCSSCEEEEEECCCC
T ss_pred EEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce--eEeecCCCceEEEEecCcc
Confidence 999998743 145667789999999999998 88999999999999999976533222 22345667899999999
Q ss_pred -----------CCcEEEEEeCCCcEEEEEcCCC----ceEEEecccccceeEEEEeCC---CCEEEEEeCCCcEEEEeCC
Q 016769 318 -----------DSKIAATAGWDRRVRIYNYRKG----SALAILKYHHATCNAVSFSSD---CKLMASASEDSTVALWELY 379 (383)
Q Consensus 318 -----------~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~v~~spd---~~~las~s~d~~i~~w~~~ 379 (383)
+++++++|+.||+|++||++++ .....+.+|...|.+++|+|+ +++|++|+.||.|++||+.
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 5899999999999999999876 455677899999999999999 8999999999999999986
Q ss_pred C
Q 016769 380 P 380 (383)
Q Consensus 380 ~ 380 (383)
.
T Consensus 238 ~ 238 (753)
T 3jro_A 238 N 238 (753)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-19 Score=163.75 Aligned_cols=276 Identities=9% Similarity=0.124 Sum_probs=163.4
Q ss_pred eEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccC-CeEEEeecC--CCCCCCCCeeeeec
Q 016769 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-GTVKCWDIE--NGGLSSNPSLTIKT 108 (383)
Q Consensus 32 ~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-~ti~~Wd~~--~~~~~~~~~~~~~~ 108 (383)
++++++.|+.|++|++........+........+..+++++ +++.|++++.+ +++++|+++ ++.. ..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~v~~~~~~~~~~~~-----~~~-- 77 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGAL-----TFA-- 77 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCE-----EEE--
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC--CCCEEEEeecCCCeEEEEEecCCCCce-----eec--
Confidence 44555889999999985322111111111223456788888 45667766655 999999997 3321 000
Q ss_pred CceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEec
Q 016769 109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDL 188 (383)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl 188 (383)
....... . .....++++++ ++++++..++.|++||+
T Consensus 78 --------~~~~~~~-------~----------------------------~~~~~~s~dg~-~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 78 --------AESALPG-------S----------------------------LTHISTDHQGQ-FVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp --------EEEECSS-------C----------------------------CSEEEECTTSS-EEEEEETTTTEEEEEEE
T ss_pred --------cccccCC-------C----------------------------CcEEEEcCCCC-EEEEEecCCCeEEEEEC
Confidence 0000000 0 00012334443 45556666789999999
Q ss_pred CCC---CeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEe-CCCcEEEEeCCCCCCcee----eeecc
Q 016769 189 NTA---ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGIPLT----AMKVH 260 (383)
Q Consensus 189 ~~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~-~dg~i~~wdl~~~~~~~~----~~~~h 260 (383)
.++ +....+.... ....+ .+.|+. . .+++++ .++.|.+||+.+.+.... ....+
T Consensus 114 ~~~~~~~~~~~~~~~~-----------~~~~~---~~s~dg---~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 175 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLD-----------GCHSA---NISPDN---R-TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV 175 (343)
T ss_dssp ETTEEEEEEEEECCCT-----------TBCCC---EECTTS---S-EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS
T ss_pred CCCccccccccccCCC-----------CceEE---EECCCC---C-EEEEecCCCCEEEEEEecCCCceeeecccccccC
Confidence 532 2233322111 01111 133332 2 344444 899999999986333221 22222
Q ss_pred -ccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCCeeEEeeeee-cC-----CCCeEEEEECCCCcEEEE-EeCCCcE
Q 016769 261 -LEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEIN-LE-----RPGISGTSIRPDSKIAAT-AGWDRRV 331 (383)
Q Consensus 261 -~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~~~-~~-----~~~i~~~~~~p~~~~l~s-~~~dg~i 331 (383)
...+..+.|++++..++.++ .++.|.+|+++..++......... .. ...+..++|+|++++++. ...|+.|
T Consensus 176 ~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i 255 (343)
T 1ri6_A 176 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLI 255 (343)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEE
Confidence 34678899999998776554 789999999975444332221211 11 234668999999987774 4479999
Q ss_pred EEEEcC--C--CceEEEecccccceeEEEEeCCCCEEEEEe-CCCcEEEEeCC
Q 016769 332 RIYNYR--K--GSALAILKYHHATCNAVSFSSDCKLMASAS-EDSTVALWELY 379 (383)
Q Consensus 332 ~iwd~~--~--~~~~~~~~~h~~~v~~v~~spd~~~las~s-~d~~i~~w~~~ 379 (383)
++||+. . .+.+..+..+.. +..++|+|||++|++++ .|+.|.+|++.
T Consensus 256 ~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 256 TVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 999998 2 344445544444 88999999999888777 68999999764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-19 Score=181.14 Aligned_cols=294 Identities=10% Similarity=0.018 Sum_probs=180.9
Q ss_pred CCceeeEEEeCCCCeEEEecC-CC-----eEEEeeCccccccccccccccc----------------------ceeeeee
Q 016769 18 RASVTDVCFHQTKPILFAGTT-GG-----ELRIWDTVQHRTVSSSWVHSAA----------------------HGIVSVA 69 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~-D~-----~v~vW~~~~~~~~~~~~~~~~~----------------------~~~~~~~ 69 (383)
...|.+++|+|||++|++++. |+ .|++||+.+++.......+... ..+..++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457899999999999999998 88 9999999877654333222211 2366788
Q ss_pred ecCCCCcceeEecccCCeEEEeecCCC---CCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCccccc
Q 016769 70 TGPSIGLNKVISQGRDGTVKCWDIENG---GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT 146 (383)
Q Consensus 70 ~~~~~~~~~l~s~~~D~ti~~Wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (383)
++| ++++|++++. ++|++||++++ .... +..+. .
T Consensus 116 ~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~-----l~~~~----------------------~------------- 152 (741)
T 2ecf_A 116 WSP--DAQRLLFPLG-GELYLYDLKQEGKAAVRQ-----LTHGE----------------------G------------- 152 (741)
T ss_dssp ECT--TSSEEEEEET-TEEEEEESSSCSTTSCCB-----CCCSS----------------------S-------------
T ss_pred ECC--CCCEEEEEeC-CcEEEEECCCCCcceEEE-----cccCC----------------------c-------------
Confidence 888 4677777765 99999999876 3211 00000 0
Q ss_pred CccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCC------CceeeEEE
Q 016769 147 DSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG------RGMCMAVQ 220 (383)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~------~~~~~~~~ 220 (383)
......++++|+. ++.+. ++.|++||+.+++........... ....... ..... ..
T Consensus 153 ------------~~~~~~~SPDG~~-la~~~--~~~i~~~d~~~g~~~~~~~~~~~~--~~~g~~~~v~~~~~~~~~-~~ 214 (741)
T 2ecf_A 153 ------------FATDAKLSPKGGF-VSFIR--GRNLWVIDLASGRQMQLTADGSTT--IGNGIAEFVADEEMDRHT-GY 214 (741)
T ss_dssp ------------CEEEEEECTTSSE-EEEEE--TTEEEEEETTTTEEEECCCCCCSS--EEESCCCHHHHHHSCCCC-SE
T ss_pred ------------ccccccCCCCCCE-EEEEe--CCcEEEEecCCCCEEEeccCCccc--eeccccceeeeecccccc-ce
Confidence 0001234566654 33333 358999999887643222211000 0000000 00000 01
Q ss_pred eecCCCCCCceEEEEEeCCC---------------------------------cEEEEeCCC-CCCceeeee--ccccCe
Q 016769 221 AYLPSKSQGFVNVLAGYEDG---------------------------------SILVWDIRN-PGIPLTAMK--VHLEPV 264 (383)
Q Consensus 221 ~~~~~~~~~~~~~~sg~~dg---------------------------------~i~~wdl~~-~~~~~~~~~--~h~~~v 264 (383)
.+.|+. ..++.++.|+ .|.+||+.+ ... ..... .|...+
T Consensus 215 ~~SpDg----~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~ 289 (741)
T 2ecf_A 215 WWAPDD----SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT-QWIDLGKEQDIYL 289 (741)
T ss_dssp EECTTS----SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC-EEECCCSCSSEEE
T ss_pred EECCCC----CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce-EEecCCCCcceEE
Confidence 244432 1344444443 788899876 543 22221 466788
Q ss_pred EEEEEeCCCCceEEEEc-----CCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcC-C
Q 016769 265 LCLSIDESCNGGISGGA-----DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR-K 338 (383)
Q Consensus 265 ~~~~~~~~~~~~~s~~~-----d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~-~ 338 (383)
..+.| +++..++.++. +..|.+||++..................+..++|+|||+++++++.|++++||.++ .
T Consensus 290 ~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~ 368 (741)
T 2ecf_A 290 ARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK 368 (741)
T ss_dssp EEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS
T ss_pred EEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC
Confidence 99999 99998876553 56789999876543322211111111134678999999999999999999999876 4
Q ss_pred CceEEEecccccceeEE-EEeCCCCEEE-EEeCCC--cEEEEeCC
Q 016769 339 GSALAILKYHHATCNAV-SFSSDCKLMA-SASEDS--TVALWELY 379 (383)
Q Consensus 339 ~~~~~~~~~h~~~v~~v-~~spd~~~la-s~s~d~--~i~~w~~~ 379 (383)
++ ...+..|...+..+ +|+|||+.|+ +++.|+ .++||++.
T Consensus 369 ~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 369 GK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp SC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 55 77787888888887 5999999765 555565 89999874
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.8e-20 Score=171.14 Aligned_cols=188 Identities=13% Similarity=0.081 Sum_probs=128.5
Q ss_pred cCCCCCceeeeccCC--cceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCc-
Q 016769 165 VPAEGPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS- 241 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~--~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~- 241 (383)
++++|+. ++.++.. ...|++||+++++... +... ... ... ..|.|+. ...+++++.|+.
T Consensus 186 ~Spdg~~-la~~s~~~~~~~i~~~d~~tg~~~~-l~~~----------~~~--~~~-~~~spdg---~~la~~~~~~g~~ 247 (415)
T 2hqs_A 186 WSPDGSK-LAYVTFESGRSALVIQTLANGAVRQ-VASF----------PRH--NGA-PAFSPDG---SKLAFALSKTGSL 247 (415)
T ss_dssp ECTTSSE-EEEEECTTSSCEEEEEETTTCCEEE-EECC----------SSC--EEE-EEECTTS---SEEEEEECTTSSC
T ss_pred EcCCCCE-EEEEEecCCCcEEEEEECCCCcEEE-eecC----------CCc--ccC-EEEcCCC---CEEEEEEecCCCc
Confidence 3455553 4433332 2489999999887543 3211 111 111 1355542 223336666655
Q ss_pred -EEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEc-CC--cEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC
Q 016769 242 -ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 317 (383)
Q Consensus 242 -i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~--~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p 317 (383)
|.+||+++.. ...+..|...+..+.|++++..++.++. ++ .|.+||++... .. .+..+...+..++|+|
T Consensus 248 ~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~--~~---~l~~~~~~~~~~~~sp 320 (415)
T 2hqs_A 248 NLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQ---RITWEGSQNQDADVSS 320 (415)
T ss_dssp EEEEEETTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CE---ECCCSSSEEEEEEECT
T ss_pred eEEEEECCCCC--EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC--EE---EEecCCCcccCeEECC
Confidence 9999998743 3566778888999999999998887775 45 46666765432 11 1223445688999999
Q ss_pred CCcEEEEEeCC---CcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCC---cEEEEeCC
Q 016769 318 DSKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS---TVALWELY 379 (383)
Q Consensus 318 ~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~---~i~~w~~~ 379 (383)
+|++|+.++.+ ..|++||+.+++.. .+..|. .+.+++|+|||++|++++.|+ .|.+||+.
T Consensus 321 dG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 321 DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp TSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 99999988865 68999999988764 455554 899999999999999998887 79999974
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-17 Score=149.88 Aligned_cols=283 Identities=11% Similarity=0.084 Sum_probs=177.5
Q ss_pred ecCCceeeEEEeCCCCeEEEecC-------CCeEEEeeCcccccccccccccccceeeeeeecCCCCcc-eeEecccCCe
Q 016769 16 GHRASVTDVCFHQTKPILFAGTT-------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGT 87 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~L~sgs~-------D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~D~t 87 (383)
.+...+..++|+|++++|++++. ++.|.+||..+++....+... .....+.++++ ++ .+++...+++
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~d--g~~l~v~~~~~~~ 112 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---LKPFGATINNT--TQTLWFGNTVNSA 112 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---SCCCSEEEETT--TTEEEEEETTTTE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---CCcceEEECCC--CCEEEEEecCCCE
Confidence 45567889999999998888774 568999999887655443322 23455677773 45 4566778899
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
|.+||.++++... .+.... ... . +.. .. .......+++
T Consensus 113 v~~~d~~~~~~~~----~~~~~~-----------~~~-------~------~~~------------~~--~~~~~~~~s~ 150 (353)
T 3vgz_A 113 VTAIDAKTGEVKG----RLVLDD-----------RKR-------T------EEV------------RP--LQPRELVADD 150 (353)
T ss_dssp EEEEETTTCCEEE----EEESCC-----------CCC-------C------SSC------------CC--CEEEEEEEET
T ss_pred EEEEeCCCCeeEE----EEecCC-----------Ccc-------c------ccc------------CC--CCCceEEECC
Confidence 9999998764211 110000 000 0 000 00 0000012335
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
+++.+++.....++.|.+||+++++.+..+..... .... + .+.++. ..++++..++.|.+||+
T Consensus 151 dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------~~~~--~---~~s~dg----~~l~~~~~~~~i~~~d~ 213 (353)
T 3vgz_A 151 ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK--------MSTG--L---ALDSEG----KRLYTTNADGELITIDT 213 (353)
T ss_dssp TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT--------TCCC--C---EEETTT----TEEEEECTTSEEEEEET
T ss_pred CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC--------ccce--E---EECCCC----CEEEEEcCCCeEEEEEC
Confidence 55543333324578899999999887766642110 0011 1 133322 24667778999999999
Q ss_pred CCCCCceeeeec----cccCeEEEEEeCCCCceEEEEc-CCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEE
Q 016769 248 RNPGIPLTAMKV----HLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA 322 (383)
Q Consensus 248 ~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 322 (383)
.+.. ....+.. +...+..+.+++++..++.++. ++.|.+||+....... ..... ....++|+|+++++
T Consensus 214 ~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~----~~~~~--~~~~~~~s~dg~~l 286 (353)
T 3vgz_A 214 ADNK-ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA----KVAAP--ESLAVLFNPARNEA 286 (353)
T ss_dssp TTTE-EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE----EEECS--SCCCEEEETTTTEE
T ss_pred CCCe-EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE----EEEcC--CCceEEECCCCCEE
Confidence 8743 3333432 3445778999999987766655 5899999987543211 12222 23568999999965
Q ss_pred EEEe-CCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCC
Q 016769 323 ATAG-WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED 370 (383)
Q Consensus 323 ~s~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d 370 (383)
+.++ .+++|.+||+.+++.+..+... ..+.+++|+|||++|..+..+
T Consensus 287 ~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 287 YVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred EEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 5555 6999999999999988777644 467999999999966655554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-18 Score=152.74 Aligned_cols=282 Identities=7% Similarity=0.033 Sum_probs=171.1
Q ss_pred EEeCCCC-eEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeE-ecccCCeEEEeecCCCCCCCCC
Q 016769 25 CFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNP 102 (383)
Q Consensus 25 ~f~~~~~-~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~ti~~Wd~~~~~~~~~~ 102 (383)
.|.+++. .+++.+.++.|++||..+++.......+ .... .++++++ ++.++ +...+++|.+||++++...
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~-~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~~~--- 75 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLG--YDFV-DTAITSD--CSNVVVTSDFCQTLVQIETQLEPPK--- 75 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECC--CCEE-EEEECSS--SCEEEEEESTTCEEEEEECSSSSCE---
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEcc--CCcc-eEEEcCC--CCEEEEEeCCCCeEEEEECCCCcee---
Confidence 4555554 5888999999999999887765544322 2234 7888884 55554 5556899999999876420
Q ss_pred eeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcc-
Q 016769 103 SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLS- 181 (383)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~- 181 (383)
...+ .....+ . . ...++++++ +++++...++
T Consensus 76 ~~~~----------~~~~~~----------~--------------------------~-~~~~s~dg~-~l~~~~~~~~~ 107 (331)
T 3u4y_A 76 VVAI----------QEGQSS----------M--------------------------A-DVDITPDDQ-FAVTVTGLNHP 107 (331)
T ss_dssp EEEE----------EECSSC----------C--------------------------C-CEEECTTSS-EEEECCCSSSS
T ss_pred EEec----------ccCCCC----------c--------------------------c-ceEECCCCC-EEEEecCCCCc
Confidence 0000 000000 0 0 012334554 3444433324
Q ss_pred -eEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCc-EEEEeCCCCCCceee---
Q 016769 182 -EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPLTA--- 256 (383)
Q Consensus 182 -~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~-i~~wdl~~~~~~~~~--- 256 (383)
.|++||+++++.+..+.... ....+ .+.|+. ...++++..++. |.+|++...+.....
T Consensus 108 ~~i~v~d~~~~~~~~~~~~~~-----------~~~~~---~~spdg---~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~ 170 (331)
T 3u4y_A 108 FNMQSYSFLKNKFISTIPIPY-----------DAVGI---AISPNG---NGLILIDRSSANTVRRFKIDADGVLFDTGQE 170 (331)
T ss_dssp CEEEEEETTTTEEEEEEECCT-----------TEEEE---EECTTS---SCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred ccEEEEECCCCCeEEEEECCC-----------Cccce---EECCCC---CEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence 89999999988766554211 11111 244432 223555677788 999999864432111
Q ss_pred eeccccCeEEEEEeCCCCceEEE-EcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEe-CCCcEEEE
Q 016769 257 MKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG-WDRRVRIY 334 (383)
Q Consensus 257 ~~~h~~~v~~~~~~~~~~~~~s~-~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~-~dg~i~iw 334 (383)
...+......+.|++++..++.+ ..++.|.+||++........ ..+. ....+..++|+||+++++.++ .++.|.+|
T Consensus 171 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~-~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~ 248 (331)
T 3u4y_A 171 FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLL-NAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNF 248 (331)
T ss_dssp EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEE-EEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEE
T ss_pred cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccccee-eecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEE
Confidence 11223457889999999866554 46889999999765431101 1122 225678899999999766554 58899999
Q ss_pred EcCCCce--EEEeccc----ccc---eeEEEEeCCCCEEEE-EeCCCcEEEEeCCCC
Q 016769 335 NYRKGSA--LAILKYH----HAT---CNAVSFSSDCKLMAS-ASEDSTVALWELYPP 381 (383)
Q Consensus 335 d~~~~~~--~~~~~~h----~~~---v~~v~~spd~~~las-~s~d~~i~~w~~~~~ 381 (383)
|+.+++. +..+..+ ... ...++|+|||++|+. +..++.|++||+..+
T Consensus 249 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 249 NQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp ETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred ECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 9998876 3333222 222 245899999997755 555679999999754
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-18 Score=178.82 Aligned_cols=196 Identities=10% Similarity=0.137 Sum_probs=133.0
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCc-CCCCCceeeEEEeec-CCCCCCceEEEEEeCCCc
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF-SSKGRGMCMAVQAYL-PSKSQGFVNVLAGYEDGS 241 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~sg~~dg~ 241 (383)
.++++|+. ++.+ .++.|.+||+.... +..+..+.......+ .+...... ..+. |+. ..++.++ ++.
T Consensus 251 ~~SpDG~~-la~~--~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~---~~~S~pdG----~~la~~~-~~~ 318 (1045)
T 1k32_A 251 HLNTDGRR-ILFS--KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFA---EDFSPLDG----DLIAFVS-RGQ 318 (1045)
T ss_dssp EEEESSSC-EEEE--ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGE---EEEEECGG----GCEEEEE-TTE
T ss_pred eEcCCCCE-EEEE--eCCEEEEecCCceE-eeeeccCcccccccccccccccce---eeecCCCC----CEEEEEE-cCE
Confidence 34566654 3333 36789999994433 334432110000000 00001111 1345 542 1355555 889
Q ss_pred EEEEeCCCCCCceeeeecccc-CeEEEEEeCCCCceEEEEcCCcEE-EEEccCCCCeeEEeeeeecCCCCeEEEEECCCC
Q 016769 242 ILVWDIRNPGIPLTAMKVHLE-PVLCLSIDESCNGGISGGADQKIV-LYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 319 (383)
Q Consensus 242 i~~wdl~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~s~~~d~~i~-~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 319 (383)
|.+|++.... ...+..|.. .+..+.|+ ++..++.++.++.+. +||++... .. .+..+...+..++|+|||
T Consensus 319 i~~~~~~~~~--~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~--~~---~l~~~~~~~~~~~~SpDG 390 (1045)
T 1k32_A 319 AFIQDVSGTY--VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK--AE---KFEENLGNVFAMGVDRNG 390 (1045)
T ss_dssp EEEECTTSSB--EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC--EE---ECCCCCCSEEEEEECTTS
T ss_pred EEEEcCCCCc--eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC--ce---EecCCccceeeeEECCCC
Confidence 9999987532 334556666 78889999 888888888877788 88876432 11 122344678999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCC----------cEEEEeCC
Q 016769 320 KIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS----------TVALWELY 379 (383)
Q Consensus 320 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~----------~i~~w~~~ 379 (383)
++|++++.++.|++||+.+++......+|...+.+++|||||++|++++.++ .|++||+.
T Consensus 391 ~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 391 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 9999999999999999999988877778999999999999999999888754 89999985
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-18 Score=160.03 Aligned_cols=266 Identities=11% Similarity=0.070 Sum_probs=175.0
Q ss_pred eeeeecCCceeeEEEeC--------------CCCeEEEecCC------CeEEEeeCcccccccccccccccceeeeeeec
Q 016769 12 AVLRGHRASVTDVCFHQ--------------TKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATG 71 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~--------------~~~~L~sgs~D------~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (383)
..+.+|...|+.+++++ .+..|+.++.+ +.|++||..+ .....+..|. ..+.+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~--~~v~~~~~S 187 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSP--QPLMSPAWS 187 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEES--SCEEEEEEC
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCC--CcceeeEEc
Confidence 45889999999998875 15566666665 7999999874 3344443333 457888999
Q ss_pred CCCCcceeEecccCC---eEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCc
Q 016769 72 PSIGLNKVISQGRDG---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS 148 (383)
Q Consensus 72 ~~~~~~~l~s~~~D~---ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (383)
| +++++++++.|+ +|++||+++++.. .+..+ ..
T Consensus 188 p--dg~~la~~s~~~~~~~i~~~d~~tg~~~-----~l~~~------------~~------------------------- 223 (415)
T 2hqs_A 188 P--DGSKLAYVTFESGRSALVIQTLANGAVR-----QVASF------------PR------------------------- 223 (415)
T ss_dssp T--TSSEEEEEECTTSSCEEEEEETTTCCEE-----EEECC------------SS-------------------------
T ss_pred C--CCCEEEEEEecCCCcEEEEEECCCCcEE-----EeecC------------CC-------------------------
Confidence 8 468888888775 9999999876421 00000 00
Q ss_pred cccccccCCccceecccCCCCCceeeeccCC--cceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCC
Q 016769 149 LCDSKESNRSFEIIDDVPAEGPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK 226 (383)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 226 (383)
......++++|+. ++.+++. +..|++||+++++. ..+... .... .. ..|.|+.
T Consensus 224 ----------~~~~~~~spdg~~-la~~~~~~g~~~i~~~d~~~~~~-~~l~~~----------~~~~--~~-~~~spdg 278 (415)
T 2hqs_A 224 ----------HNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQI-RQVTDG----------RSNN--TE-PTWFPDS 278 (415)
T ss_dssp ----------CEEEEEECTTSSE-EEEEECTTSSCEEEEEETTTCCE-EECCCC----------SSCE--EE-EEECTTS
T ss_pred ----------cccCEEEcCCCCE-EEEEEecCCCceEEEEECCCCCE-EeCcCC----------CCcc--cc-eEECCCC
Confidence 0001123455553 4433333 34699999988764 333221 1111 11 1355542
Q ss_pred CCCceEEEEEeC-CC--cEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcC---CcEEEEEccCCCCeeEEe
Q 016769 227 SQGFVNVLAGYE-DG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTGSCVIK 300 (383)
Q Consensus 227 ~~~~~~~~sg~~-dg--~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d---~~i~~wdl~~~~~~~~~~ 300 (383)
..++.++. ++ .|.+||+.+.. ...+..|...+..+.|+++++.++.++.+ ..|.+||++.... .
T Consensus 279 ----~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--~-- 348 (415)
T 2hqs_A 279 ----QNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--Q-- 348 (415)
T ss_dssp ----SEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--E--
T ss_pred ----CEEEEEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE--E--
Confidence 24555554 45 67777887643 33455566778899999999988877764 5799999875432 1
Q ss_pred eeeecCCCCeEEEEECCCCcEEEEEeCCC---cEEEEEcCCCceEEEecccccceeEEEEeCCCC
Q 016769 301 KEINLERPGISGTSIRPDSKIAATAGWDR---RVRIYNYRKGSALAILKYHHATCNAVSFSSDCK 362 (383)
Q Consensus 301 ~~~~~~~~~i~~~~~~p~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~ 362 (383)
.+..+ ..+.+++|+||+++|+.++.|+ .|++||+. ++....+..|...|.+++|+|.-.
T Consensus 349 -~l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 349 -VLSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp -ECCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred -EecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 12222 3688999999999999998887 79999996 555677888999999999999754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.4e-18 Score=148.83 Aligned_cols=244 Identities=11% Similarity=-0.000 Sum_probs=158.9
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcc-cccccccccccccceeeeeeecCCCCcceeEecc--cCC
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG--RDG 86 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~D~ 86 (383)
....+.+|.+.|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ....+..+.+++ ++..+++++ .++
T Consensus 33 ~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~sp--dg~~l~~~~~~~~~ 108 (297)
T 2ojh_A 33 KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF-ATICNNDHGISP--DGALYAISDKVEFG 108 (297)
T ss_dssp EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT-CCCBCSCCEECT--TSSEEEEEECTTTS
T ss_pred ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc-ccccccceEECC--CCCEEEEEEeCCCC
Confidence 3446778999999999999999999976 88999999987 6544332222 123456678887 467777766 445
Q ss_pred eEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 87 ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
..++|.++.... . ...
T Consensus 109 ~~~l~~~~~~~~--~-~~~------------------------------------------------------------- 124 (297)
T 2ojh_A 109 KSAIYLLPSTGG--T-PRL------------------------------------------------------------- 124 (297)
T ss_dssp SCEEEEEETTCC--C-CEE-------------------------------------------------------------
T ss_pred cceEEEEECCCC--c-eEE-------------------------------------------------------------
Confidence 666666532100 0 000
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
+.... . +. . ..+.|+ +...++++..|+.++||+
T Consensus 125 -------~~~~~--~-~~-------------------------------~---~~~spd---g~~l~~~~~~~~~~~l~~ 157 (297)
T 2ojh_A 125 -------MTKNL--P-SY-------------------------------W---HGWSPD---GKSFTYCGIRDQVFDIYS 157 (297)
T ss_dssp -------CCSSS--S-EE-------------------------------E---EEECTT---SSEEEEEEEETTEEEEEE
T ss_pred -------eecCC--C-cc-------------------------------c---eEECCC---CCEEEEEECCCCceEEEE
Confidence 00000 0 00 0 001111 111233566677788887
Q ss_pred CCCCCCceeeeeccccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEE
Q 016769 247 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 325 (383)
Q Consensus 247 l~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~ 325 (383)
+.........+..|...+.++.|++++..++.++ .++.+++|+++....... .+..+...+..++|+|++++|+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~~~ 234 (297)
T 2ojh_A 158 MDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE---RITDSAYGDWFPHPSPSGDKVVFV 234 (297)
T ss_dssp EETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE---ECCCCSEEEEEEEECTTSSEEEEE
T ss_pred EECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE---EEecCCcccCCeEECCCCCEEEEE
Confidence 5432223444556667889999999998777665 589999999874333221 222334567889999999999888
Q ss_pred eCC-----------CcEEEEEcCCCce--EEEecccccceeEEEEeCCCCEEEEEeCCC
Q 016769 326 GWD-----------RRVRIYNYRKGSA--LAILKYHHATCNAVSFSSDCKLMASASEDS 371 (383)
Q Consensus 326 ~~d-----------g~i~iwd~~~~~~--~~~~~~h~~~v~~v~~spd~~~las~s~d~ 371 (383)
+.+ +.|++||+.+++. +..+.+|...+.+++|+||+++|++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 876 5699999988765 344457888899999999999988887664
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=169.30 Aligned_cols=270 Identities=11% Similarity=0.049 Sum_probs=174.3
Q ss_pred CCceeeEEEeCCCCeEEEecC-CCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEeccc---CCeEEEeec
Q 016769 18 RASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDI 93 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~-D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---D~ti~~Wd~ 93 (383)
..+|++++|+|||++||+++. ||+++||++.+++.. .+..+ ....+..+.++| + ..+++++. +...++|.+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~-~~~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNRE-PINSVLDPHYGV--G-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSS-CCSEECEECTTC--S-EEEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecc-cccccccccCCC--C-eEEEEeccCCCCcceEEEEE
Confidence 568999999999999999888 999999998554432 22222 113566778887 3 55665543 566777766
Q ss_pred CC--CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCc
Q 016769 94 EN--GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPK 171 (383)
Q Consensus 94 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (383)
.. ... . ..+..... .. ...+++++..
T Consensus 96 ~~~~~g~--~--~~l~~~~~-----------------------------------------------~~-~~~~s~dg~~ 123 (582)
T 3o4h_A 96 NTSRPGE--E--QRLEAVKP-----------------------------------------------MR-ILSGVDTGEA 123 (582)
T ss_dssp ETTSTTC--C--EECTTSCS-----------------------------------------------BE-EEEEEECSSC
T ss_pred eccCCCc--c--ccccCCCC-----------------------------------------------ce-eeeeCCCCCe
Confidence 43 110 0 00000000 00 1123455555
Q ss_pred eeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCC----CcEEEEeC
Q 016769 172 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----GSILVWDI 247 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~d----g~i~~wdl 247 (383)
.+++++..++ +.+||+++++......... .. ..+.|+. ..+++++.| +.|++||+
T Consensus 124 ~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~-------------~~---~~~spDG----~~la~~~~~~~~~~~i~~~d~ 182 (582)
T 3o4h_A 124 VVFTGATEDR-VALYALDGGGLRELARLPG-------------FG---FVSDIRG----DLIAGLGFFGGGRVSLFTSNL 182 (582)
T ss_dssp EEEEEECSSC-EEEEEEETTEEEEEEEESS-------------CE---EEEEEET----TEEEEEEEEETTEEEEEEEET
T ss_pred EEEEecCCCC-ceEEEccCCcEEEeecCCC-------------ce---EEECCCC----CEEEEEEEcCCCCeEEEEEcC
Confidence 5555555544 4599998876433222110 01 1233432 235555555 78999998
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCC--cEEEEEccCCCCeeEEeeeeecCCCCeEEEE--------ECC
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTS--------IRP 317 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~--~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~--------~~p 317 (383)
.++. ...+..|...+..+.|+|+++.++++..++ .|.+||++..... ....+...+..++ |+|
T Consensus 183 ~~g~--~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~sp 255 (582)
T 3o4h_A 183 SSGG--LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-----DLELPSKDFSSYRPTAITWLGYLP 255 (582)
T ss_dssp TTCC--CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-----ECCCSCSHHHHHCCSEEEEEEECT
T ss_pred CCCC--ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-----EccCCCcChhhhhhccccceeEcC
Confidence 8644 345677888889999999999999888888 7899998754322 1222333444455 999
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCc---EEEEeC
Q 016769 318 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDST---VALWEL 378 (383)
Q Consensus 318 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~---i~~w~~ 378 (383)
||+++++++.|+++++|++ ++... .+...+.+++|+ |++++++++.+.. +.+||.
T Consensus 256 dg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 256 DGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp TSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred CCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 9999999999999999999 65443 344678899999 9999999888754 555554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-17 Score=148.17 Aligned_cols=117 Identities=8% Similarity=0.070 Sum_probs=85.6
Q ss_pred CeEEEEEeCCCCceEE-EEcCCcEEEEEccCCCCeeEEeeeeecCC------CCeEEEEECCCCcEE-EEEeCCCcEEEE
Q 016769 263 PVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINLER------PGISGTSIRPDSKIA-ATAGWDRRVRIY 334 (383)
Q Consensus 263 ~v~~~~~~~~~~~~~s-~~~d~~i~~wdl~~~~~~~~~~~~~~~~~------~~i~~~~~~p~~~~l-~s~~~dg~i~iw 334 (383)
....+.|+++++.++. +..++.+.+|+++..++............ ..+..++|+|||++| ++...+++|.+|
T Consensus 188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~ 267 (347)
T 3hfq_A 188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVF 267 (347)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEE
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEE
Confidence 4557899999986655 45688999999986555433222222211 347889999999977 556679999999
Q ss_pred EcCC---CceEEEecccccceeEEEEeCCCCEEEEEeCC-CcEEEEeCC
Q 016769 335 NYRK---GSALAILKYHHATCNAVSFSSDCKLMASASED-STVALWELY 379 (383)
Q Consensus 335 d~~~---~~~~~~~~~h~~~v~~v~~spd~~~las~s~d-~~i~~w~~~ 379 (383)
|+.. .+.+..+..+...+..++|+|||++|++++.+ +.|.+|++.
T Consensus 268 ~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 268 AVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 9973 24455565666678999999999988877765 899999774
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-17 Score=147.02 Aligned_cols=271 Identities=11% Similarity=0.096 Sum_probs=165.9
Q ss_pred CeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcce-eEecccCCeEEEeecCCCCCCCCCeeeeecC
Q 016769 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (383)
Q Consensus 31 ~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~ 109 (383)
++|++++.|+.|++||..+++.+..+...........++++++ ++. +++++.+++|.+||+.+++... .+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~v~~~~~~~v~~~d~~~~~~~~----~~~~~ 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTGETLG----RIDLS 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTCCEEE----EEECC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCC--CCEEEEEeCCCCeEEEEECCCCCeEe----eEEcC
Confidence 4799999999999999987766544332110002456778874 444 4677788999999998764210 01000
Q ss_pred ceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeecc--------C---
Q 016769 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAG--------E--- 178 (383)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~--- 178 (383)
...... .. .....++++++. ++++. .
T Consensus 76 -----------~~~~~~---~~----------------------------~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 76 -----------TPEERV---KS----------------------------LFGAALSPDGKT-LAIYESPVRLELTHFEV 112 (337)
T ss_dssp -----------BTTEEE---EC----------------------------TTCEEECTTSSE-EEEEEEEEEECSSCEEE
T ss_pred -----------Cccccc---cc----------------------------ccceEECCCCCE-EEEEecccccccccccc
Confidence 000000 00 000112344433 33332 0
Q ss_pred CcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeee
Q 016769 179 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 258 (383)
Q Consensus 179 ~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~ 258 (383)
.++.|.+||+.+++.+..+.....+ . .+ .+.|+. . .++++ ++.|.+||+++.. ....+.
T Consensus 113 ~~~~i~v~d~~~~~~~~~~~~~~~~---------~--~~---~~s~dg---~-~l~~~--~~~i~~~d~~~~~-~~~~~~ 171 (337)
T 1pby_B 113 QPTRVALYDAETLSRRKAFEAPRQI---------T--ML---AWARDG---S-KLYGL--GRDLHVMDPEAGT-LVEDKP 171 (337)
T ss_dssp CCCEEEEEETTTTEEEEEEECCSSC---------C--CE---EECTTS---S-CEEEE--SSSEEEEETTTTE-EEEEEC
T ss_pred cCceEEEEECCCCcEEEEEeCCCCc---------c--ee---EECCCC---C-EEEEe--CCeEEEEECCCCc-Eeeeee
Confidence 3579999999988766555421110 1 11 133432 1 24444 6899999998743 333443
Q ss_pred ccc--cCeEEEEEeCCCCceEEEEc-CC-----------------------cEEEEEccCCCCeeEEeeeeecCCCCeEE
Q 016769 259 VHL--EPVLCLSIDESCNGGISGGA-DQ-----------------------KIVLYNLDHSTGSCVIKKEINLERPGISG 312 (383)
Q Consensus 259 ~h~--~~v~~~~~~~~~~~~~s~~~-d~-----------------------~i~~wdl~~~~~~~~~~~~~~~~~~~i~~ 312 (383)
.+. .++ .+++++..++..+. ++ .|.+||+...... ......+...+.+
T Consensus 172 ~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~ 245 (337)
T 1pby_B 172 IQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA---MREVRIMDVFYFS 245 (337)
T ss_dssp STTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE---EEEEEECSSCEEE
T ss_pred ccccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce---EeecCCCCCceee
Confidence 332 222 45666654433322 22 4678888754322 2223334456788
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
++|+|++++++++ ++.|++||+.+++.+..+.. ...+.+++|+|||++|++++.|+.|++||+..
T Consensus 246 ~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 246 TAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred EEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 9999999998887 79999999999988877753 34678999999999999999999999999853
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.80 E-value=9.4e-18 Score=168.23 Aligned_cols=295 Identities=8% Similarity=0.020 Sum_probs=170.1
Q ss_pred CceeeEEEeCCCCeEEEecCCCeEEEeeCccccccccccccccc-ceeeeeeecCCCCcceeEecccC---------CeE
Q 016769 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-HGIVSVATGPSIGLNKVISQGRD---------GTV 88 (383)
Q Consensus 19 ~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~D---------~ti 88 (383)
..+.+++|+|||++|++ +.||+|++||+.++++...+..+... ..+..++++| ++++|++++.+ +++
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECC--CCCEEEEEecCccceeecceeeE
Confidence 34678999999998877 78999999999887665443322210 1367889998 47888877654 788
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
.+||+++++.. .+... . ... .......++++
T Consensus 94 ~~~d~~~~~~~-----~l~~~------------~--------~~~------------------------~~~~~~~~SPd 124 (723)
T 1xfd_A 94 VLSKIPHGDPQ-----SLDPP------------E--------VSN------------------------AKLQYAGWGPK 124 (723)
T ss_dssp EEEESSSCCCE-----ECCCT------------T--------CCS------------------------CCCSBCCBCSS
T ss_pred EEEECCCCceE-----eccCC------------c--------ccc------------------------ccccccEECCC
Confidence 89999876420 00000 0 000 00001235577
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCC-CCCcCC-------CCCceeeEEEeecCCCCCCceEEEEEeCC-
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG-SPNFSS-------KGRGMCMAVQAYLPSKSQGFVNVLAGYED- 239 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~-s~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~sg~~d- 239 (383)
|+.+..++ . +.|++||+.+++............ ...... .+.. ....|+|+. ..++.++.|
T Consensus 125 G~~la~~~-~--~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~---~~~~~SpDg----~~la~~~~~~ 194 (723)
T 1xfd_A 125 GQQLIFIF-E--NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH---IAHWWSPDG----TRLAYAAIND 194 (723)
T ss_dssp TTCEEEEE-T--TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS---EEEEECTTS----SEEEEEEEEC
T ss_pred CCEEEEEE-C--CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc---ceEEECCCC----CEEEEEEECC
Confidence 76543332 2 689999999877543332211000 000000 0000 011244432 124443322
Q ss_pred ---------------------------------CcEEEEeCCCCCCceeeeecc------ccCeEEEEEeCCCCceEEEE
Q 016769 240 ---------------------------------GSILVWDIRNPGIPLTAMKVH------LEPVLCLSIDESCNGGISGG 280 (383)
Q Consensus 240 ---------------------------------g~i~~wdl~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~s~~ 280 (383)
.+|++||+.+... ...+..+ ...+..+.|++++..+++..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 273 (723)
T 1xfd_A 195 SRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWL 273 (723)
T ss_dssp TTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred CccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-eEEeeCCccCCCccceeEEEEEeCCCeEEEEEE
Confidence 2799999987542 2334433 56788999999998776654
Q ss_pred c----CCcEEEEEccCCCCeeEEeeeeecCCCCe----EEEEECCCCcEEEE--EeCCC------cEEEEEc-CCCce--
Q 016769 281 A----DQKIVLYNLDHSTGSCVIKKEINLERPGI----SGTSIRPDSKIAAT--AGWDR------RVRIYNY-RKGSA-- 341 (383)
Q Consensus 281 ~----d~~i~~wdl~~~~~~~~~~~~~~~~~~~i----~~~~~~p~~~~l~s--~~~dg------~i~iwd~-~~~~~-- 341 (383)
. +..|.+||++.......... .+...+ ..++|+|||+.|+. +..++ .|.+||+ ..++.
T Consensus 274 ~~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 350 (723)
T 1xfd_A 274 NRAQNVSILTLCDATTGVCTKKHED---ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN 350 (723)
T ss_dssp ETTSCEEEEEEEETTTCCEEEEEEE---ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC
T ss_pred cCCCCeEEEEEEeCCCCcceEEEEe---ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc
Confidence 3 35688999875542222211 111222 37899999996664 45677 4666673 33331
Q ss_pred EEEecccccceeE-EEEeCCCCEEEEEeCC---CcEEEEeCC
Q 016769 342 LAILKYHHATCNA-VSFSSDCKLMASASED---STVALWELY 379 (383)
Q Consensus 342 ~~~~~~h~~~v~~-v~~spd~~~las~s~d---~~i~~w~~~ 379 (383)
...+..+...+.. ++|+|||+.|+..+.+ +.++||++.
T Consensus 351 ~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 351 IQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp CCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred eeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 4444433444544 6999999988766555 789999985
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-17 Score=169.54 Aligned_cols=292 Identities=12% Similarity=0.099 Sum_probs=190.5
Q ss_pred eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcc-cccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
...+.+|.+.|.+++|+++ .++++++.|++++||.+.. +.....+..+. .+...+++| ++..++.+ .++.|.
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~Sp--DG~~la~~-~~~~i~ 268 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNT--DGRRILFS-KGGSIY 268 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEE--SSSCEEEE-ETTEEE
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcC--CCCEEEEE-eCCEEE
Confidence 3456899999999999999 7888889999999998653 22222222222 234557777 45667766 589999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC-CC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP-AE 168 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 168 (383)
+||++.... ..+.. ... .......... .......++ ++
T Consensus 269 ~~d~~~~~l-----~~l~~-------------~~~-------~~~~~~~~~~----------------~~v~~~~~S~pd 307 (1045)
T 1k32_A 269 IFNPDTEKI-----EKIEI-------------GDL-------ESPEDRIISI----------------PSKFAEDFSPLD 307 (1045)
T ss_dssp EECTTTCCE-----EECCC-------------CCC-------CBCCSEEEEC----------------GGGGEEEEEECG
T ss_pred EecCCceEe-----eeecc-------------Ccc-------cccccccccc----------------cccceeeecCCC
Confidence 999843210 00000 000 0000000000 000112344 55
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE-EEeC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL-VWDI 247 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~-~wdl 247 (383)
|+. ++.+. ++.+.+|++.++... .+... ... .... ..|. +...++.++.++.+. +||+
T Consensus 308 G~~-la~~~--~~~i~~~~~~~~~~~-~~~~~----------~~~-~~~~-~~~s-----dg~~l~~~s~~~~l~~~~d~ 366 (1045)
T 1k32_A 308 GDL-IAFVS--RGQAFIQDVSGTYVL-KVPEP----------LRI-RYVR-RGGD-----TKVAFIHGTREGDFLGIYDY 366 (1045)
T ss_dssp GGC-EEEEE--TTEEEEECTTSSBEE-ECSCC----------SCE-EEEE-ECSS-----SEEEEEEEETTEEEEEEEET
T ss_pred CCE-EEEEE--cCEEEEEcCCCCceE-EccCC----------Ccc-eEEe-eeEc-----CCCeEEEEECCCceEEEEEC
Confidence 543 33333 578999999876532 22210 010 0011 1122 123566777788888 8898
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 327 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~ 327 (383)
.... ...+..|...+..+.|++++..+++++.++.|++||++...... ....+...+..++|+|||++|++++.
T Consensus 367 ~~~~--~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~----~~~~~~~~v~~~~~SpDG~~la~~~~ 440 (1045)
T 1k32_A 367 RTGK--AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV----IERSREAMITDFTISDNSRFIAYGFP 440 (1045)
T ss_dssp TTCC--EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE----EEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred CCCC--ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE----eccCCCCCccceEECCCCCeEEEEec
Confidence 7633 23344677889999999999999999999999999997543221 22235566789999999999998887
Q ss_pred CC----------cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 328 DR----------RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 328 dg----------~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
++ .|++||+.+++ ...+..|...+.+++|+|||++|++++.++..++|+.
T Consensus 441 ~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 441 LKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp ECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred CccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 54 99999999887 6677788888999999999999999999988888875
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-15 Score=138.62 Aligned_cols=276 Identities=11% Similarity=0.109 Sum_probs=161.6
Q ss_pred eecCCceeeEEEeCCCCeEEEecCC-CeEEEeeCc--cccc--ccccccccccceeeeeeecCCCCcceeE-ecccCCeE
Q 016769 15 RGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTV--QHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTV 88 (383)
Q Consensus 15 ~gH~~~V~~v~f~~~~~~L~sgs~D-~~v~vW~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~ti 88 (383)
..|...+.+++|+|++++|++++.+ +.|++|++. +++. +..+.. ......++++++ ++.++ ++..+++|
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~d--g~~l~~~~~~~~~i 108 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL---PGSLTHISTDHQ--GQFVFVGSYNAGNV 108 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC---SSCCSEEEECTT--SSEEEEEETTTTEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc---CCCCcEEEEcCC--CCEEEEEecCCCeE
Confidence 4688899999999999998888887 999999986 3332 212111 124567788873 56565 45568999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++||++++.. .. ......... . .....++++
T Consensus 109 ~~~d~~~~~~-----~~---------~~~~~~~~~----------~-------------------------~~~~~~s~d 139 (343)
T 1ri6_A 109 SVTRLEDGLP-----VG---------VVDVVEGLD----------G-------------------------CHSANISPD 139 (343)
T ss_dssp EEEEEETTEE-----EE---------EEEEECCCT----------T-------------------------BCCCEECTT
T ss_pred EEEECCCCcc-----cc---------ccccccCCC----------C-------------------------ceEEEECCC
Confidence 9999853210 00 000000000 0 000123344
Q ss_pred CCceeeeccCCcceEEEEecCC-CCeee----EeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNT-AERCT----RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~-~~~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
++ ++++++..++.|++||+.+ ++... .+... .......+ .+.|+ +...++++..++.|.
T Consensus 140 g~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~---~~~pd---g~~l~~~~~~~~~i~ 203 (343)
T 1ri6_A 140 NR-TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV---------EGAGPRHM---VFHPN---EQYAYCVNELNSSVD 203 (343)
T ss_dssp SS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS---------TTCCEEEE---EECTT---SSEEEEEETTTTEEE
T ss_pred CC-EEEEecCCCCEEEEEEecCCCceeeecccccccC---------CCCCcceE---EECCC---CCEEEEEeCCCCEEE
Confidence 44 4555554678999999987 44321 11110 00011111 24443 222344566899999
Q ss_pred EEeCCCC-CCc--eeeee---cc---ccCeEEEEEeCCCCceEE-EEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEE
Q 016769 244 VWDIRNP-GIP--LTAMK---VH---LEPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGT 313 (383)
Q Consensus 244 ~wdl~~~-~~~--~~~~~---~h---~~~v~~~~~~~~~~~~~s-~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~ 313 (383)
+||+... +.. ..... .. ...+..+.|++++..++. +..++.|.+||++..++............ .+..+
T Consensus 204 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~ 282 (343)
T 1ri6_A 204 VWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGF 282 (343)
T ss_dssp EEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCE
T ss_pred EEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceE
Confidence 9999642 111 11111 11 224567999999987764 44789999999985333333222333333 38899
Q ss_pred EECCCCcEEEEEe-CCCcEEEEEcC--CCc--eEEEecccccceeEEEEeCCCC
Q 016769 314 SIRPDSKIAATAG-WDRRVRIYNYR--KGS--ALAILKYHHATCNAVSFSSDCK 362 (383)
Q Consensus 314 ~~~p~~~~l~s~~-~dg~i~iwd~~--~~~--~~~~~~~h~~~v~~v~~spd~~ 362 (383)
+|+|+++++++++ .++.|.+|+++ +++ .+..+.. .....+++|.|+.+
T Consensus 283 ~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 283 NVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred EECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 9999999888887 68999999654 553 2333432 24567788887654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-15 Score=136.18 Aligned_cols=200 Identities=11% Similarity=0.103 Sum_probs=122.4
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEecc----CcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEe
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQ----NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 246 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wd 246 (383)
++++++...++.+.+|++.....+..+.. ......+.........++ .+.|+ +...++++..++.|.+|+
T Consensus 110 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~spd---g~~l~~~~~~~~~v~v~~ 183 (361)
T 3scy_A 110 KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCV---RITPD---GKYLLADDLGTDQIHKFN 183 (361)
T ss_dssp SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEE---EECTT---SSEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEE---EECCC---CCEEEEEeCCCCEEEEEE
Confidence 34566666678999999976443322211 000000000000111111 34443 222345566689999999
Q ss_pred CCCCCC------ce-----eee-eccccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCCeeEEeeeee---cCCCCe
Q 016769 247 IRNPGI------PL-----TAM-KVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEIN---LERPGI 310 (383)
Q Consensus 247 l~~~~~------~~-----~~~-~~h~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~~~---~~~~~i 310 (383)
+..... .. ... ..+......+.|+++++.+++++ .++.|.+|+++.. ......... .+....
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g--~~~~~~~~~~~~~~~~~~ 261 (361)
T 3scy_A 184 INPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG--MLDEIQTVAADTVNAQGS 261 (361)
T ss_dssp ECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT--EEEEEEEEESCSSCCCCE
T ss_pred EcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC--ceEEeEEEecCCCCCCCc
Confidence 875431 11 111 12334567899999998877766 6899999999743 221111121 122456
Q ss_pred EEEEECCCCcEEEEEeCC--CcEEEEEcC--CCc--eEEEecccccceeEEEEeCCCCEEEEEe-CCCcEEEEeCC
Q 016769 311 SGTSIRPDSKIAATAGWD--RRVRIYNYR--KGS--ALAILKYHHATCNAVSFSSDCKLMASAS-EDSTVALWELY 379 (383)
Q Consensus 311 ~~~~~~p~~~~l~s~~~d--g~i~iwd~~--~~~--~~~~~~~h~~~v~~v~~spd~~~las~s-~d~~i~~w~~~ 379 (383)
..++|+||+++|+++..+ ++|.+|+++ +++ .+..+.. ...+..++|+|||++|++++ .++.|.+|++.
T Consensus 262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 799999999988776654 899999996 344 3334433 45678999999999888877 67999998774
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-16 Score=157.75 Aligned_cols=140 Identities=10% Similarity=0.058 Sum_probs=97.3
Q ss_pred CCCcEEEEeCCCCCCceeee--eccccCeEEEEEeCCCCceEEEEcCC-----cEEEEEccCCCCeeEEeeee-ecCCCC
Q 016769 238 EDGSILVWDIRNPGIPLTAM--KVHLEPVLCLSIDESCNGGISGGADQ-----KIVLYNLDHSTGSCVIKKEI-NLERPG 309 (383)
Q Consensus 238 ~dg~i~~wdl~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~s~~~d~-----~i~~wdl~~~~~~~~~~~~~-~~~~~~ 309 (383)
.+..|.+||+.++.. .... ..|...+..+.|+++++.+++++.++ .|.+||+........+.... ......
T Consensus 233 ~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 233 HHVTVGIYHLATGKT-VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp CEEEEEEEETTTTEE-EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred CeeEEEEEECCCCce-EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 456799999986432 2211 24556789999999999888877775 89999987542111111111 111112
Q ss_pred eEEEEECC--CCcEEEEEeCCCcEEEEEcC-CCceEEEecccccceeE-EEEeCCCCEEEEEeC-CC----cEEEEeC
Q 016769 310 ISGTSIRP--DSKIAATAGWDRRVRIYNYR-KGSALAILKYHHATCNA-VSFSSDCKLMASASE-DS----TVALWEL 378 (383)
Q Consensus 310 i~~~~~~p--~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~-v~~spd~~~las~s~-d~----~i~~w~~ 378 (383)
+..++|+| |++++++++.|+.++||+++ +++.+..+..|...+.. ++|+|||+.|+.++. ++ .|..||+
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence 46789999 99999999999999999986 67777788888877876 799999997765544 44 4555554
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-16 Score=159.64 Aligned_cols=296 Identities=9% Similarity=0.008 Sum_probs=170.9
Q ss_pred ceeeEEEeCCCCeEEEecCCCeEEEeeCcccc--cccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCC
Q 016769 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (383)
Q Consensus 20 ~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~ 97 (383)
.|.+++|||||++|++++. +.|++||+.+++ .+..+..+ ...+..+.++| ++++++.++ +++|.+||+++++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~--~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHG--EGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCS--SSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccC--CcccccccCCC--CCCEEEEEe-CCcEEEEecCCCC
Confidence 4899999999999999887 999999998762 33333222 23467788998 467777766 4699999998763
Q ss_pred CCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeecc
Q 016769 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAG 177 (383)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 177 (383)
... +....... +.... ...+...+.+ ......++++|+.++.++.
T Consensus 184 ~~~-----~~~~~~~~----~~~g~---------~~~v~~~~~~-----------------~~~~~~~SpDg~~l~~~~~ 228 (741)
T 2ecf_A 184 QMQ-----LTADGSTT----IGNGI---------AEFVADEEMD-----------------RHTGYWWAPDDSAIAYARI 228 (741)
T ss_dssp EEE-----CCCCCCSS----EEESC---------CCHHHHHHSC-----------------CCCSEEECTTSSCEEEEEE
T ss_pred EEE-----eccCCccc----eeccc---------cceeeeeccc-----------------cccceEECCCCCEEEEEEE
Confidence 211 00000000 00000 0000000000 0000123344432222211
Q ss_pred -----------------------------CC--cceEEEEecCC-CCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCC
Q 016769 178 -----------------------------EQ--LSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS 225 (383)
Q Consensus 178 -----------------------------~~--~~~i~~Wdl~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 225 (383)
.. ...|++||+.+ ++....... ......... ..| |+
T Consensus 229 d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~----------~~~~~~~~~-~~~-pD 296 (741)
T 2ecf_A 229 DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG----------KEQDIYLAR-VNW-RD 296 (741)
T ss_dssp ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC----------SCSSEEEEE-EEE-EE
T ss_pred cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC----------CCcceEEEE-EEe-CC
Confidence 11 11688899988 664322111 000111111 134 54
Q ss_pred CCCCceEEEEEe-----CCCcEEEEeCCCCCCceeeeecccc----CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCe
Q 016769 226 KSQGFVNVLAGY-----EDGSILVWDIRNPGIPLTAMKVHLE----PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS 296 (383)
Q Consensus 226 ~~~~~~~~~sg~-----~dg~i~~wdl~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~ 296 (383)
. . .++.++ .+..|.+||+.++. ....+..+.. .+..+.|++++..+++++.|+.++||.++....
T Consensus 297 g---~-~l~~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~- 370 (741)
T 2ecf_A 297 P---Q-HLSFQRQSRDQKKLDLVEVTLASNQ-QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK- 370 (741)
T ss_dssp T---T-EEEEEEEETTSSEEEEEEEETTTCC-EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-
T ss_pred C---C-EEEEEEecccCCeEEEEEEECCCCc-eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-
Confidence 2 2 244332 36789999998743 3344444432 446788999998778888899888988764332
Q ss_pred eEEeeeeecCCCCeEEE-EECCCCcEEEEE-eCCC--cEEEEEcCC-CceEEEecccccceeEEEEeCCCCEEEEEeCC-
Q 016769 297 CVIKKEINLERPGISGT-SIRPDSKIAATA-GWDR--RVRIYNYRK-GSALAILKYHHATCNAVSFSSDCKLMASASED- 370 (383)
Q Consensus 297 ~~~~~~~~~~~~~i~~~-~~~p~~~~l~s~-~~dg--~i~iwd~~~-~~~~~~~~~h~~~v~~v~~spd~~~las~s~d- 370 (383)
. ..+..+...+..+ .|+|+++.|+.. +.++ +++||++.. ++....+.. ...+.+++|||||++|+....+
T Consensus 371 -~--~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~ 446 (741)
T 2ecf_A 371 -A--AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNN 446 (741)
T ss_dssp -E--EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEET
T ss_pred -e--eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCC
Confidence 1 2233345567776 599999877544 4455 899999964 555566654 5668899999999988765444
Q ss_pred ---CcEEEEeC
Q 016769 371 ---STVALWEL 378 (383)
Q Consensus 371 ---~~i~~w~~ 378 (383)
..+.+|+.
T Consensus 447 ~~p~~~~l~~~ 457 (741)
T 2ecf_A 447 STPPQIELFRA 457 (741)
T ss_dssp TEEEEEEEEET
T ss_pred CCCCeEEEEEc
Confidence 35777775
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-16 Score=155.87 Aligned_cols=296 Identities=11% Similarity=0.029 Sum_probs=168.6
Q ss_pred CceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCC---
Q 016769 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN--- 95 (383)
Q Consensus 19 ~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~--- 95 (383)
..|.+++|+|| ..|+.+ .|+.+++||+.+++.... ..+ ...+..+.++| +++.++. +.|++|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l-~~~--~~~~~~~~~Sp--dG~~la~-~~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYL-FDT--NEETASLDFSP--VGDRVAY-VRNHNLYIARGGKLGE 153 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEE-ECC--TTCCTTCEECT--TSSEEEE-EETTEEEEEECBCTTS
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEc-cCC--cccccCCcCCC--CCCEEEE-EECCeEEEEecCcccc
Confidence 57999999999 544443 469999999977654322 112 23456678888 4677777 4789999999987
Q ss_pred --CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCcee
Q 016769 96 --GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYM 173 (383)
Q Consensus 96 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (383)
++.... ........ ....... .. +. .......++++|+.++
T Consensus 154 ~~g~~~~~----~~~~~~~~-----~~g~~~~-~e----------e~-----------------~~~~~~~~SpDg~~la 196 (706)
T 2z3z_A 154 GMSRAIAV----TIDGTETL-----VYGQAVH-QR----------EF-----------------GIEKGTFWSPKGSCLA 196 (706)
T ss_dssp CCCCCEES----CSCCBTTE-----EESSCCG-GG----------CT-----------------TCCCSEEECTTSSEEE
T ss_pred cCCCcEEe----ccCCCCCe-----Ecccchh-hh----------hc-----------------CCCceEEECCCCCEEE
Confidence 542110 00000000 0000000 00 00 0000011223333221
Q ss_pred eec-------------------------------cCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEee
Q 016769 174 AVA-------------------------------GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 222 (383)
Q Consensus 174 ~~~-------------------------------g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 222 (383)
.++ ...+..|++||+.+++........ .. ..... ...+
T Consensus 197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~--------~~--~~~~~-~~~~ 265 (706)
T 2z3z_A 197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE--------PK--EKFLT-NLSW 265 (706)
T ss_dssp EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS--------CT--TCEEE-EEEE
T ss_pred EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC--------CC--ceeEe-eEEE
Confidence 111 123467999999887643211100 00 01111 1235
Q ss_pred cCCCCCCceEEEEEeCCC-----cEEEEeCCCCCCceeeeec-cc---cCeEEEEEeC--CCCceEEEEcCCcEEEEEcc
Q 016769 223 LPSKSQGFVNVLAGYEDG-----SILVWDIRNPGIPLTAMKV-HL---EPVLCLSIDE--SCNGGISGGADQKIVLYNLD 291 (383)
Q Consensus 223 ~~~~~~~~~~~~sg~~dg-----~i~~wdl~~~~~~~~~~~~-h~---~~v~~~~~~~--~~~~~~s~~~d~~i~~wdl~ 291 (383)
.|+. ..+++++.|+ .|++||+.++......... +. ..+..+.|++ ++..+++++.|+.+++|.++
T Consensus 266 spdg----~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 266 SPDE----NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CTTS----SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred ECCC----CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 5542 2466655565 8999999875232222211 11 1245678998 88888888889999999887
Q ss_pred CCCCeeEEeeeeecCCCCeEE-EEECCCCcEEEEEeCC-C----cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEE
Q 016769 292 HSTGSCVIKKEINLERPGISG-TSIRPDSKIAATAGWD-R----RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMA 365 (383)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~i~~-~~~~p~~~~l~s~~~d-g----~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~la 365 (383)
...... ..+..+...+.. ++|+|+++.|+.++.+ + .|..||+.+++ ...+. |...+.+++|||||++|+
T Consensus 342 ~~~~~~---~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~ 416 (706)
T 2z3z_A 342 TTGRLI---RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAII 416 (706)
T ss_dssp TTSCEE---EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEE
T ss_pred CCCCEE---EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEE
Confidence 332211 123334445666 7999999877666554 3 66677777665 34443 677799999999999887
Q ss_pred EEeCC----CcEEEEeCC
Q 016769 366 SASED----STVALWELY 379 (383)
Q Consensus 366 s~s~d----~~i~~w~~~ 379 (383)
.+..+ +.|++||+.
T Consensus 417 ~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 417 DIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EEEECSSCSCEEEEEESS
T ss_pred EEecCCCCCcEEEEEECC
Confidence 76444 459999974
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-16 Score=148.31 Aligned_cols=118 Identities=14% Similarity=0.032 Sum_probs=92.2
Q ss_pred eeccccCeEEEEEeCC-CCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEE
Q 016769 257 MKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 335 (383)
Q Consensus 257 ~~~h~~~v~~~~~~~~-~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd 335 (383)
+++|..+|.++.|++. ...+++++.|++|++||++.. .... ....+...+.+++|+|++++|++|+.||+|++||
T Consensus 145 ~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~--~~~~--~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd 220 (434)
T 2oit_A 145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET--VKVC--ATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYL 220 (434)
T ss_dssp CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS--EEEE--EEECGGGCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC--ccee--eccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEc
Confidence 4568889999999997 667899999999999999754 2221 2223456799999999999999999999999999
Q ss_pred cCCCceEEEeccc-------ccceeEEEEeCCCCEEEE-EeCCCc------EEEEeCC
Q 016769 336 YRKGSALAILKYH-------HATCNAVSFSSDCKLMAS-ASEDST------VALWELY 379 (383)
Q Consensus 336 ~~~~~~~~~~~~h-------~~~v~~v~~spd~~~las-~s~d~~------i~~w~~~ 379 (383)
++ ++....+..| ...|.+++|++++.++++ ++.||. +++|++.
T Consensus 221 ~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 221 PT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp TT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred cC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence 98 5555555443 338999999999887654 445543 8899985
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.72 E-value=9.4e-15 Score=133.97 Aligned_cols=287 Identities=10% Similarity=0.094 Sum_probs=159.8
Q ss_pred cCCceeeEEEeCCCCeEEEecCC----CeEEEeeCccc-ccccccc-cccccceeeeeeecCCCCcceeE-ecccCCeEE
Q 016769 17 HRASVTDVCFHQTKPILFAGTTG----GELRIWDTVQH-RTVSSSW-VHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVK 89 (383)
Q Consensus 17 H~~~V~~v~f~~~~~~L~sgs~D----~~v~vW~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~ti~ 89 (383)
|...+..++|+|||++|++++.+ +.|++|++... ..+..+. ..........+++ +++.++ +...++++.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~----dg~~l~~~~~~~~~v~ 123 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT----NGKNIVTANYSGGSIT 123 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE----CSSEEEEEETTTTEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE----CCCEEEEEECCCCEEE
Confidence 67788889999999999999986 79999997653 1111111 1111122334444 235555 445789999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+|++............. . .... .+.. .... ........+++++
T Consensus 124 ~~~~~~~g~~~~~~~~~----------~-~~g~--------~~~~----------------~~~~--~~~~~~~~~spdg 166 (361)
T 3scy_A 124 VFPIGQDGALLPASDVI----------E-FKGS--------GPDK----------------ERQT--MPHLHCVRITPDG 166 (361)
T ss_dssp EEEBCTTSCBCSCSEEE----------E-CCCC--------CSCT----------------TTCS--SCCEEEEEECTTS
T ss_pred EEEeCCCCcCcccceeE----------E-ccCC--------CCCc----------------cccC--CCcceEEEECCCC
Confidence 99997543211100000 0 0000 0000 0000 0000112344666
Q ss_pred CceeeeccCCcceEEEEecCCCCe------eeEe---ccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAER------CTRL---HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 240 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~------~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg 240 (383)
+ ++++++..++.+++|++..... +... .... . ..+.... ...|.|+. ...++++..++
T Consensus 167 ~-~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~------~-~~~~~~~--~~~~spdg---~~l~v~~~~~~ 233 (361)
T 3scy_A 167 K-YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK------V-APGSGPR--HLIFNSDG---KFAYLINEIGG 233 (361)
T ss_dssp S-EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE------C-CTTCCEE--EEEECTTS---SEEEEEETTTC
T ss_pred C-EEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee------c-CCCCCCe--EEEEcCCC---CEEEEEcCCCC
Confidence 4 4555555678999999875442 2111 0000 0 0001111 11355542 22234444799
Q ss_pred cEEEEeCCCCCC-ceeee---eccccCeEEEEEeCCCCceEEEEcC--CcEEEEEccCCCCeeEEeeeeecCCCCeEEEE
Q 016769 241 SILVWDIRNPGI-PLTAM---KVHLEPVLCLSIDESCNGGISGGAD--QKIVLYNLDHSTGSCVIKKEINLERPGISGTS 314 (383)
Q Consensus 241 ~i~~wdl~~~~~-~~~~~---~~h~~~v~~~~~~~~~~~~~s~~~d--~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~ 314 (383)
.|.+||+.+... .+..+ ..+......+.|+++++.+++++.+ +.|.+|+++..++.......... ...+..++
T Consensus 234 ~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~ 312 (361)
T 3scy_A 234 TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFI 312 (361)
T ss_dssp EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEE
T ss_pred eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEE
Confidence 999999975321 11112 2233446789999999988666654 88999999754444333333333 35678999
Q ss_pred ECCCCcEEEEEe-CCCcEEEEEcC--CCceEEEe-cccccceeEEEEe
Q 016769 315 IRPDSKIAATAG-WDRRVRIYNYR--KGSALAIL-KYHHATCNAVSFS 358 (383)
Q Consensus 315 ~~p~~~~l~s~~-~dg~i~iwd~~--~~~~~~~~-~~h~~~v~~v~~s 358 (383)
|+||+++|++++ .+++|.+|+++ +++..... ..+...+.||+|.
T Consensus 313 ~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 313 ITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp ECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred ECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 999999888887 67999997654 56654332 2345578888886
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-16 Score=143.89 Aligned_cols=315 Identities=14% Similarity=0.083 Sum_probs=169.5
Q ss_pred CCCeeeeeecCCceee-----EEEeCCCCeEEEecC-CC--eEEEeeCcccccccccccccccceeeeeeecCCCCccee
Q 016769 8 PDPVAVLRGHRASVTD-----VCFHQTKPILFAGTT-GG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV 79 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~-----v~f~~~~~~L~sgs~-D~--~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (383)
-.++..|..|...+.. .+|+|||++|+.++. ++ .|.+||+.+++.......+. ..+....++| ++..|
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~--~~~~~~~~sp--dg~~l 95 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRG--DNTFGGFLSP--DDDAL 95 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSC--BCSSSCEECT--TSSEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCC--CCccceEEcC--CCCEE
Confidence 3456677788877666 899999999988887 67 47788887765443322221 2233567887 46888
Q ss_pred EecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCcc
Q 016769 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSF 159 (383)
Q Consensus 80 ~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (383)
+.++.++.+.+||+++++... .................+. .......... ..
T Consensus 96 ~~~~~~~~l~~~d~~~g~~~~----~~~~~~~~~~~~~~~~~~d--------g~~l~~~~~~----------~~------ 147 (388)
T 3pe7_A 96 FYVKDGRNLMRVDLATLEENV----VYQVPAEWVGYGTWVANSD--------CTKLVGIEIR----------RE------ 147 (388)
T ss_dssp EEEETTTEEEEEETTTCCEEE----EEECCTTEEEEEEEEECTT--------SSEEEEEEEE----------GG------
T ss_pred EEEeCCCeEEEEECCCCccee----eeechhhcccccceeECCC--------CCeecccccc----------Cc------
Confidence 888888999999998874211 0000000000000000000 0000000000 00
Q ss_pred ceecccCCCCC--cee-eeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecC-CCCCCceEEEE
Q 016769 160 EIIDDVPAEGP--KYM-AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP-SKSQGFVNVLA 235 (383)
Q Consensus 160 ~~~~~~~~~~~--~~~-~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s 235 (383)
...+... .+. ......+..|.+||+.+++......... .. ....+.| +. ..++.
T Consensus 148 ----~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-----------~~---~~~~~sp~dg----~~l~~ 205 (388)
T 3pe7_A 148 ----DWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ-----------WL---GHPIYRPYDD----STVAF 205 (388)
T ss_dssp ----GCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS-----------CE---EEEEEETTEE----EEEEE
T ss_pred ----ccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc-----------cc---cccEECCCCC----CEEEE
Confidence 0000000 000 1112334679999999886432222110 00 1112444 31 23444
Q ss_pred EeC------CCcEEEEeCCCCCCceeeeeccc--cCeEEEEEeCCCCceEEEEc--CC---cEEEEEccCCCCeeEEeee
Q 016769 236 GYE------DGSILVWDIRNPGIPLTAMKVHL--EPVLCLSIDESCNGGISGGA--DQ---KIVLYNLDHSTGSCVIKKE 302 (383)
Q Consensus 236 g~~------dg~i~~wdl~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~s~~~--d~---~i~~wdl~~~~~~~~~~~~ 302 (383)
... +..|.++|+.... ...+..+. ..+....|++++..++..+. ++ .|.+||++......+. .
T Consensus 206 ~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~--~ 281 (388)
T 3pe7_A 206 CHEGPHDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLT--S 281 (388)
T ss_dssp EECSCTTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEE--E
T ss_pred EEecCCCCCcceEEEEeCCCCc--eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEE--c
Confidence 333 3377888876432 23333333 35777889999987755433 22 3899998755422211 1
Q ss_pred eecCC---CCeEEEEECCCCcEEEEE---------eCCCcEEEEEcCCCceEEEeccccc-----------ceeEEEEeC
Q 016769 303 INLER---PGISGTSIRPDSKIAATA---------GWDRRVRIYNYRKGSALAILKYHHA-----------TCNAVSFSS 359 (383)
Q Consensus 303 ~~~~~---~~i~~~~~~p~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~v~~sp 359 (383)
..... ......+|+|||+.|+.. ..+..|++||+.+++. ..+..|.. .+.+++|+|
T Consensus 282 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~sp 360 (388)
T 3pe7_A 282 MPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTP 360 (388)
T ss_dssp ECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECT
T ss_pred CCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCC
Confidence 11100 001223689999887754 4567999999988764 44555555 578889999
Q ss_pred CCCEEEEEe-CCCcEEEEeCCCC
Q 016769 360 DCKLMASAS-EDSTVALWELYPP 381 (383)
Q Consensus 360 d~~~las~s-~d~~i~~w~~~~~ 381 (383)
||+.|+.++ .++...||.+..+
T Consensus 361 Dg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 361 DDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp TSSEEEEEECTTSSCEEEEEECC
T ss_pred CCCEEEEEecCCCceeEEEEECC
Confidence 999777655 5888888876543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-14 Score=130.62 Aligned_cols=193 Identities=9% Similarity=0.045 Sum_probs=125.5
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCe-eeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCC-C--c
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-G--S 241 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~d-g--~ 241 (383)
+++++ ++++++..++.|.+||+++++. ...+...... . .++ .+.|+. . .++++..+ + .
T Consensus 48 s~dg~-~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---------~-~~~---~~s~dg---~-~l~~~~~~~~~~~ 109 (331)
T 3u4y_A 48 TSDCS-NVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS---------M-ADV---DITPDD---Q-FAVTVTGLNHPFN 109 (331)
T ss_dssp CSSSC-EEEEEESTTCEEEEEECSSSSCEEEEEEECSSC---------C-CCE---EECTTS---S-EEEECCCSSSSCE
T ss_pred cCCCC-EEEEEeCCCCeEEEEECCCCceeEEecccCCCC---------c-cce---EECCCC---C-EEEEecCCCCccc
Confidence 34554 4555555577999999998886 4444322111 0 001 133332 2 34444444 3 8
Q ss_pred EEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEE-EcCCc-EEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC
Q 016769 242 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG-GADQK-IVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 319 (383)
Q Consensus 242 i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~-~~d~~-i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 319 (383)
|.+||+++. ..+..+..+ .....+.|+++++.++++ ..++. +.+|+++.....................++|+|++
T Consensus 110 i~v~d~~~~-~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg 187 (331)
T 3u4y_A 110 MQSYSFLKN-KFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG 187 (331)
T ss_dssp EEEEETTTT-EEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS
T ss_pred EEEEECCCC-CeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCC
Confidence 999999874 334445443 345899999999866555 45588 99999985432211111111233568899999999
Q ss_pred cEEEEE-eCCCcEEEEEcCCCce---EEEecccccceeEEEEeCCCCEEEEE-eCCCcEEEEeCC
Q 016769 320 KIAATA-GWDRRVRIYNYRKGSA---LAILKYHHATCNAVSFSSDCKLMASA-SEDSTVALWELY 379 (383)
Q Consensus 320 ~~l~s~-~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~v~~spd~~~las~-s~d~~i~~w~~~ 379 (383)
++++.+ ..+++|++||+.+++. +..+.. ...+..++|+|||++|+.+ ..++.|.+||+.
T Consensus 188 ~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 188 NFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp SEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred CEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 965544 4689999999999887 766653 3567889999999966544 468889999985
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-15 Score=135.34 Aligned_cols=281 Identities=9% Similarity=0.054 Sum_probs=156.4
Q ss_pred eEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcce-eEecccCCeEEEeecCCCCCCCC
Q 016769 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGRDGTVKCWDIENGGLSSN 101 (383)
Q Consensus 23 ~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~D~ti~~Wd~~~~~~~~~ 101 (383)
.+++++++.++++++.|++|++||..+++.+..+..+. ......++++++ ++. +++...+++|.+||+++++...
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~d--g~~~~v~~~~~~~i~~~d~~t~~~~~- 79 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-KFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTCKNTF- 79 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS-CCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTTEEEE-
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC-CCCCceeEECCC--CCEEEEEeCCCCcEEEEeCCCCcEEE-
Confidence 46788999999999999999999998876654443221 013456677773 454 4567789999999998763210
Q ss_pred CeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCC--
Q 016769 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQ-- 179 (383)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-- 179 (383)
.+... ..+... + .......++++++ +++++...
T Consensus 80 ---~~~~~----------~~~~~~---------------~----------------~~~~~~~~spdg~-~l~~~~~~~~ 114 (349)
T 1jmx_B 80 ---HANLS----------SVPGEV---------------G----------------RSMYSFAISPDGK-EVYATVNPTQ 114 (349)
T ss_dssp ---EEESC----------CSTTEE---------------E----------------ECSSCEEECTTSS-EEEEEEEEEE
T ss_pred ---EEEcc----------cccccc---------------c----------------ccccceEECCCCC-EEEEEccccc
Confidence 00000 000000 0 0000012334444 34444322
Q ss_pred ---------cceEEEEecCCCCeee---EeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 180 ---------LSEVEIWDLNTAERCT---RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 180 ---------~~~i~~Wdl~~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
.+.|.+||+++++... ..... ....++ .+.++ +. ++++ ++.|.+||+
T Consensus 115 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----------~~~~~~---~~s~d---g~--l~~~--~~~i~~~d~ 173 (349)
T 1jmx_B 115 RLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-----------RQVYLM---RAADD---GS--LYVA--GPDIYKMDV 173 (349)
T ss_dssp ECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-----------SSCCCE---EECTT---SC--EEEE--SSSEEEECT
T ss_pred ccccccccCCCeEEEEECCCccccceeeeccCC-----------Ccccce---eECCC---Cc--EEEc--cCcEEEEeC
Confidence 3789999998854322 22111 011111 13333 22 3344 344999999
Q ss_pred CCCCCceeeeeccc--c----------------------CeEEEEEeCCCCceE-EEEcCCcEEEEEccCCCCeeEEeee
Q 016769 248 RNPGIPLTAMKVHL--E----------------------PVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKE 302 (383)
Q Consensus 248 ~~~~~~~~~~~~h~--~----------------------~v~~~~~~~~~~~~~-s~~~d~~i~~wdl~~~~~~~~~~~~ 302 (383)
++.. ....+..+. . ....+.+.+++.... .......+..+|+.... ... ..
T Consensus 174 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~ 249 (349)
T 1jmx_B 174 KTGK-YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK--THT-QE 249 (349)
T ss_dssp TTCC-EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC--EEE-EE
T ss_pred CCCc-eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCc--EEe-cc
Confidence 8743 233333221 0 112233332211000 00000111223333221 111 11
Q ss_pred eecCCCCeEEEEECC-CCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 303 INLERPGISGTSIRP-DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 303 ~~~~~~~i~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
.......+.+++|+| ++++++++ +++|++||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+..
T Consensus 250 ~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 250 FADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred cccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 112334678899999 99998887 89999999999988777653 34578899999999888889999999999853
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-14 Score=131.70 Aligned_cols=258 Identities=10% Similarity=0.065 Sum_probs=156.3
Q ss_pred ceeeEEEeCCCCeE-EEecCCCeEEEeeCccccccccccccc---ccceeeeeeecCCCCcceeEecc------------
Q 016769 20 SVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHS---AAHGIVSVATGPSIGLNKVISQG------------ 83 (383)
Q Consensus 20 ~V~~v~f~~~~~~L-~sgs~D~~v~vW~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~------------ 83 (383)
.+..++|+|++++| ++++.++.|.+||+.+++.+..+.... .......+.+++ +++.++.++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP--DGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT--TSSEEEEEEEEEEECSSCEEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC--CCCEEEEEecccccccccccc
Confidence 58899999999765 566778999999998776554332211 011345677777 456676664
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
.++.|.+||+++++... .+ . . .. . ....
T Consensus 113 ~~~~i~v~d~~~~~~~~----~~----------~--~-~~-------~----------------------------~~~~ 140 (337)
T 1pby_B 113 QPTRVALYDAETLSRRK----AF----------E--A-PR-------Q----------------------------ITML 140 (337)
T ss_dssp CCCEEEEEETTTTEEEE----EE----------E--C-CS-------S----------------------------CCCE
T ss_pred cCceEEEEECCCCcEEE----EE----------e--C-CC-------C----------------------------ccee
Confidence 57999999997653100 00 0 0 00 0 0001
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCce---EEEEEeCCC
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV---NVLAGYEDG 240 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~sg~~dg 240 (383)
.++++++. ++++ ++.|++||+++++....+..........+++.+..+.. ... .+.. .......++
T Consensus 141 ~~s~dg~~-l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~------~~~-~~~~~~~~~~~~~~~~ 209 (337)
T 1pby_B 141 AWARDGSK-LYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN------QHE-SSGVMATPFYTARKDI 209 (337)
T ss_dssp EECTTSSC-EEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC------CCT-TTTEEEEEEEEEBTTS
T ss_pred EECCCCCE-EEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEee------ecc-CCCceeeeeecccccc
Confidence 13345543 4443 36799999999887666553321122222332221110 000 0000 011122222
Q ss_pred ----------cEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 241 ----------SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 241 ----------~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
.|.+||+++.......+..+...+..+.+++++..++++ ++.|.+||++... .. ..... ...+
T Consensus 210 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~--~~--~~~~~-~~~~ 282 (337)
T 1pby_B 210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA--SI--KRVPL-PHSY 282 (337)
T ss_dssp CTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE--EE--EEEEC-SSCC
T ss_pred ccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc--Cc--ceecC-CCce
Confidence 689999987543222334455567889999999887777 7899999987532 22 12222 2457
Q ss_pred EEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccc
Q 016769 311 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH 349 (383)
Q Consensus 311 ~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~ 349 (383)
.+++|+|+++++++++.++.|++||+.+++.+..+..+.
T Consensus 283 ~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp CEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred eeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 889999999999999999999999999999887776543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-14 Score=133.37 Aligned_cols=119 Identities=12% Similarity=0.033 Sum_probs=83.6
Q ss_pred ccCeEEEEEeCCCCceEEEEc-CCcEEEEEccCCCCeeEE--e--eeeecC--C-C-------CeEEEE-ECCCCcEEEE
Q 016769 261 LEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVI--K--KEINLE--R-P-------GISGTS-IRPDSKIAAT 324 (383)
Q Consensus 261 ~~~v~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~--~--~~~~~~--~-~-------~i~~~~-~~p~~~~l~s 324 (383)
...+..+.|+++++.+++++. ++.|.+|+++..++.... . ..+... . . .+..++ |+|||++|++
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v 271 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence 345778899999988877764 789999998754444321 1 111111 0 1 478899 9999998877
Q ss_pred EeCCC------cEEEEEcC-CCceEE---EecccccceeEEEEeC---CCCEEEEEeCC-CcEEEEeCC
Q 016769 325 AGWDR------RVRIYNYR-KGSALA---ILKYHHATCNAVSFSS---DCKLMASASED-STVALWELY 379 (383)
Q Consensus 325 ~~~dg------~i~iwd~~-~~~~~~---~~~~h~~~v~~v~~sp---d~~~las~s~d-~~i~~w~~~ 379 (383)
+..+. +|++|+++ +++... ....+...+..++|+| ||++|++++.+ +.|++|++.
T Consensus 272 ~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred ECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 66432 89999996 565433 2333455567889999 89999998875 899999874
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=149.62 Aligned_cols=147 Identities=13% Similarity=0.107 Sum_probs=112.4
Q ss_pred EEEEEeCCCcEEEEeCCCC-------C--Cceee-----eeccccCeEEEEEeCCCCceE----EEEcCCcEEEEEccCC
Q 016769 232 NVLAGYEDGSILVWDIRNP-------G--IPLTA-----MKVHLEPVLCLSIDESCNGGI----SGGADQKIVLYNLDHS 293 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~-------~--~~~~~-----~~~h~~~v~~~~~~~~~~~~~----s~~~d~~i~~wdl~~~ 293 (383)
.+++++.|+ +++|+...- . ..+.. ...+..+|.+++|++++..++ +++.|+.|++||++..
T Consensus 50 ~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~ 128 (434)
T 2oit_A 50 LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTF 128 (434)
T ss_dssp EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHH
T ss_pred EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcccc
Confidence 466777777 999875310 0 00110 112445799999999999888 7888999999998643
Q ss_pred -----CC-ee-EEeeeeecCCCCeEEEEECCC-CcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEE
Q 016769 294 -----TG-SC-VIKKEINLERPGISGTSIRPD-SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMA 365 (383)
Q Consensus 294 -----~~-~~-~~~~~~~~~~~~i~~~~~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~la 365 (383)
.. .. ........|...|.+++|+|+ +++|++++.||+|++||++++.......+|...|.+++|+|+|++|+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~la 208 (434)
T 2oit_A 129 SNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLA 208 (434)
T ss_dssp HCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEE
T ss_pred ccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEE
Confidence 11 11 111223345678999999998 78999999999999999999877766677999999999999999999
Q ss_pred EEeCCCcEEEEeCC
Q 016769 366 SASEDSTVALWELY 379 (383)
Q Consensus 366 s~s~d~~i~~w~~~ 379 (383)
+|+.|+.|++||+.
T Consensus 209 sgs~dg~v~iwd~~ 222 (434)
T 2oit_A 209 VGKQNGTVVQYLPT 222 (434)
T ss_dssp EEETTSCEEEECTT
T ss_pred EEcCCCcEEEEccC
Confidence 99999999999985
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-15 Score=149.69 Aligned_cols=330 Identities=9% Similarity=-0.024 Sum_probs=163.9
Q ss_pred CeeeeeecCC---ceeeEEEeCCCCeEEEecCC---------CeEEEeeCccccccccccccc-ccceeeeeeecCCCCc
Q 016769 10 PVAVLRGHRA---SVTDVCFHQTKPILFAGTTG---------GELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGL 76 (383)
Q Consensus 10 ~~~~l~gH~~---~V~~v~f~~~~~~L~sgs~D---------~~v~vW~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 76 (383)
....+.+|.. .|.+++|||||++|++++.| +.+.+||+.+++. ..+.... ....+..++++| ++
T Consensus 49 ~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP--dG 125 (723)
T 1xfd_A 49 STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP--KG 125 (723)
T ss_dssp CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS--ST
T ss_pred EEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC--CC
Confidence 4456666765 49999999999999999875 7788999987764 1121111 112356788888 46
Q ss_pred ceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeec---------cccccccccCCCCccceeccCccc-cc
Q 016769 77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK---------EPYANAKQANEPKDCYEREVGETV-DT 146 (383)
Q Consensus 77 ~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~ 146 (383)
++++.++. ++|++||+++++... ................ ..........+....+........ ..
T Consensus 126 ~~la~~~~-~~i~~~~~~~g~~~~----~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~ 200 (723)
T 1xfd_A 126 QQLIFIFE-NNIYYCAHVGKQAIR----VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIM 200 (723)
T ss_dssp TCEEEEET-TEEEEESSSSSCCEE----EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEE
T ss_pred CEEEEEEC-CeEEEEECCCCceEE----EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceE
Confidence 78877765 799999998764311 0000000000000000 000000001111000000000000 00
Q ss_pred CccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCC
Q 016769 147 DSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK 226 (383)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 226 (383)
.... .............++.+|.. ..+..|++||+.+++....+..+. .... ..... ....++|+.
T Consensus 201 ~~~~-~~~~~~~~~~~~~~~~~G~~------~~~~~l~~~d~~~~~~~~~l~~~~-----~~~~-~~~~~-~~~~~SpDg 266 (723)
T 1xfd_A 201 ELPT-YTGSIYPTVKPYHYPKAGSE------NPSISLHVIGLNGPTHDLEMMPPD-----DPRM-REYYI-TMVKWATST 266 (723)
T ss_dssp EECC-CSSSSSCCCEEEECCBTTSC------CCEEEEEEEESSSSCCCEECCCCC-----CGGG-SSEEE-EEEEESSSS
T ss_pred Eeec-cCCcCCCcceeccCCCCCCC------CCeeEEEEEECCCCceeEEeeCCc-----cCCC-cccee-EEEEEeCCC
Confidence 0000 00000000000001111110 123479999998887544443210 0000 01111 112355542
Q ss_pred CCCceEEEEEe----CCCcEEEEeCCCCCCceeeeec-cccCe----EEEEEeCCCCceEE--EEcCC----c--EEEEE
Q 016769 227 SQGFVNVLAGY----EDGSILVWDIRNPGIPLTAMKV-HLEPV----LCLSIDESCNGGIS--GGADQ----K--IVLYN 289 (383)
Q Consensus 227 ~~~~~~~~sg~----~dg~i~~wdl~~~~~~~~~~~~-h~~~v----~~~~~~~~~~~~~s--~~~d~----~--i~~wd 289 (383)
..+++.. .+..|.+||+.++. ....+.. +...+ ..+.|+++++.++. +..++ . |.+||
T Consensus 267 ----~~l~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 267 ----KVAVTWLNRAQNVSILTLCDATTGV-CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp ----EEEEEEEETTSCEEEEEEEETTTCC-EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred ----eEEEEEEcCCCCeEEEEEEeCCCCc-ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 2344433 34679999998754 2333332 22333 26789999987764 45666 3 55565
Q ss_pred -ccCCCCeeEEeeeeecCCCCeEE-EEECCCCcEEEEEeCC---CcEEEEEcCCCc--eEEEecc---cccceeEEEEeC
Q 016769 290 -LDHSTGSCVIKKEINLERPGISG-TSIRPDSKIAATAGWD---RRVRIYNYRKGS--ALAILKY---HHATCNAVSFSS 359 (383)
Q Consensus 290 -l~~~~~~~~~~~~~~~~~~~i~~-~~~~p~~~~l~s~~~d---g~i~iwd~~~~~--~~~~~~~---h~~~v~~v~~sp 359 (383)
.......+. ..+......+.. ++|+||+++|+..+.+ +++++|+++... ....+.. |...+..++|+|
T Consensus 342 ~~~~~~~~~~--~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~sp 419 (723)
T 1xfd_A 342 SQPNSSNDNI--QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSH 419 (723)
T ss_dssp SSCCSSSCCC--CBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECT
T ss_pred ccCCCCccce--eEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECC
Confidence 222210000 111112233444 6899999998776665 789999986432 2333433 667788999999
Q ss_pred CCCEEEEEe
Q 016769 360 DCKLMASAS 368 (383)
Q Consensus 360 d~~~las~s 368 (383)
||++|+...
T Consensus 420 dg~~l~~~~ 428 (723)
T 1xfd_A 420 SMDFFLLKC 428 (723)
T ss_dssp TSSEEEEEC
T ss_pred CCCEEEEEc
Confidence 999877643
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-14 Score=128.17 Aligned_cols=192 Identities=14% Similarity=0.075 Sum_probs=126.6
Q ss_pred CCCCCceeeeccCCcceEEEEecCC-CCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEe--CCCcE
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSI 242 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~--~dg~i 242 (383)
+++++ ++++++ ++.|++||+++ ++......... .....++ .+.|+. ..++.++ .++.+
T Consensus 50 spdg~-~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~---------~~~~~~~---~~spdg----~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 50 SPDGK-YLLLNS--EGLLYRLSLAGDPSPEKVDTGFA---------TICNNDH---GISPDG----ALYAISDKVEFGKS 110 (297)
T ss_dssp CTTSS-EEEEEE--TTEEEEEESSSCCSCEECCCTTC---------CCBCSCC---EECTTS----SEEEEEECTTTSSC
T ss_pred CCCCC-EEEEEc--CCeEEEEeCCCCCCceEeccccc---------cccccce---EECCCC----CEEEEEEeCCCCcc
Confidence 35554 444433 57999999988 66433222110 0011111 244432 2466666 34556
Q ss_pred EEEeCCCCCCceeeeeccccCeEEEEEeCCCCceE-EEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcE
Q 016769 243 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 321 (383)
Q Consensus 243 ~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 321 (383)
+||.+.........+..+ ..+..+.|++++..++ +++.|+.+++|+++..+.... .+..+...+.+++|+|++++
T Consensus 111 ~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~ 186 (297)
T 2ojh_A 111 AIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET---RLTHGEGRNDGPDYSPDGRW 186 (297)
T ss_dssp EEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE---ECCCSSSCEEEEEECTTSSE
T ss_pred eEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce---EcccCCCccccceECCCCCE
Confidence 666553222223334333 3588889999998776 778899999999865443321 22334467899999999998
Q ss_pred EEEEe-CCCcEEEEEcC-CCceEEEecccccceeEEEEeCCCCEEEEEeCC-----------CcEEEEeCCC
Q 016769 322 AATAG-WDRRVRIYNYR-KGSALAILKYHHATCNAVSFSSDCKLMASASED-----------STVALWELYP 380 (383)
Q Consensus 322 l~s~~-~dg~i~iwd~~-~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d-----------~~i~~w~~~~ 380 (383)
++.++ .|+.+++|+++ .+.....+..|...+.+++|+|||++|++++.+ +.|.+||+..
T Consensus 187 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 187 IYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 87766 59999999986 566677788888889999999999999988876 5699999853
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-13 Score=125.76 Aligned_cols=203 Identities=15% Similarity=0.020 Sum_probs=131.2
Q ss_pred CCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEE-eCCCcEEEE
Q 016769 167 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVW 245 (383)
Q Consensus 167 ~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg-~~dg~i~~w 245 (383)
++++ ++.+++..++.|.+||+++++.+..+........ ..........+ .+.|+. ...++++ +.++.|.+|
T Consensus 98 ~dg~-~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~s~dg---~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 98 NTTQ-TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT-EEVRPLQPREL---VADDAT---NTVYISGIGKESVIWVV 169 (353)
T ss_dssp TTTT-EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC-SSCCCCEEEEE---EEETTT---TEEEEEEESSSCEEEEE
T ss_pred CCCC-EEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc-cccCCCCCceE---EECCCC---CEEEEEecCCCceEEEE
Confidence 4444 3455556678999999999887666643211000 00000001111 233432 2223333 458899999
Q ss_pred eCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEE
Q 016769 246 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 325 (383)
Q Consensus 246 dl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~ 325 (383)
|+++. .....+..+...+..+.+++++..+++++.++.|.+||+........+..........+.+++|+|++++++.+
T Consensus 170 d~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 170 DGGNI-KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp ETTTT-EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred cCCCC-ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 99874 33445554555578899999999899999999999999875432111111011133457889999999977666
Q ss_pred eC-CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEE-EEEeCCCcEEEEeCCC
Q 016769 326 GW-DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASEDSTVALWELYP 380 (383)
Q Consensus 326 ~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~l-as~s~d~~i~~w~~~~ 380 (383)
+. ++.|.+||+.+++.+..+.... ...++|+|||+++ ++...++.|.+||+..
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 65 4999999999999887776433 2568999999954 5555799999999853
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-15 Score=147.13 Aligned_cols=136 Identities=17% Similarity=0.150 Sum_probs=104.3
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcC----CcEEEEEccCCCCeeEEeeeeecCCC
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD----QKIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d----~~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
+++.+.++.+.+||+.++. . ..+..+.. ..+.|+|+++.+++++.| ..|.+||++..... .+..+..
T Consensus 125 ~~~s~~~~~~~l~d~~~g~-~-~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-----~l~~~~~ 195 (582)
T 3o4h_A 125 VFTGATEDRVALYALDGGG-L-RELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-----VFDSGEG 195 (582)
T ss_dssp EEEEECSSCEEEEEEETTE-E-EEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-----EECCSSC
T ss_pred EEEecCCCCceEEEccCCc-E-EEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-----EeecCCC
Confidence 3344444555699997643 2 22332222 788899999998877776 77999998755432 2233445
Q ss_pred CeEEEEECCCCcEEEEEeCCC--cEEEEEcCCCceEEEecccccceeEEE--------EeCCCCEEEEEeCCCcEEEEeC
Q 016769 309 GISGTSIRPDSKIAATAGWDR--RVRIYNYRKGSALAILKYHHATCNAVS--------FSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~v~--------~spd~~~las~s~d~~i~~w~~ 378 (383)
.+..++|+|||++|+++..++ +|++||+.+++.. .+.+|...+..++ |+|||+++++++.|+.+++|++
T Consensus 196 ~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 196 SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 689999999999999888899 8999999998877 7778888787777 9999999999999999999987
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-15 Score=148.69 Aligned_cols=292 Identities=6% Similarity=-0.071 Sum_probs=163.3
Q ss_pred eEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccc-cceeeeeeecCCCCcceeEeccc---------CCeEEEee
Q 016769 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGR---------DGTVKCWD 92 (383)
Q Consensus 23 ~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~---------D~ti~~Wd 92 (383)
+++|+|||++++++ .|++|++||+.++++...+..+.. ...+..++++| ++++|+.++. |++|++||
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECC--CCCeEEEEecCceeEEeecceEEEEEE
Confidence 67999999766655 699999999988765443322211 01367888998 4678887765 79999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
+++++.... ..+ .. ......++++|+.+
T Consensus 97 ~~~g~~~~~--~~l-------------~~-------------------------------------~~~~~~~SPDG~~l 124 (719)
T 1z68_A 97 LSNGEFVRG--NEL-------------PR-------------------------------------PIQYLCWSPVGSKL 124 (719)
T ss_dssp TTTTEECCS--SCC-------------CS-------------------------------------SBCCEEECSSTTCE
T ss_pred CCCCccccc--eec-------------Cc-------------------------------------ccccceECCCCCEE
Confidence 987642100 000 00 00012345777644
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCc------eeeEEEeecCCCCCCceEEEEEeCCC------
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRG------MCMAVQAYLPSKSQGFVNVLAGYEDG------ 240 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~sg~~dg------ 240 (383)
+.+ .++.|++||+.+++.......... ........... -......|+|+. ..++.++.|.
T Consensus 125 -a~~--~~~~i~~~~~~~g~~~~l~~~~~~-~~v~~g~~~~v~~ee~~~~~~~~~wSPDG----~~la~~~~d~~~~~~~ 196 (719)
T 1z68_A 125 -AYV--YQNNIYLKQRPGDPPFQITFNGRE-NKIFNGIPDWVYEEEMLATKYALWWSPNG----KFLAYAEFNDTDIPVI 196 (719)
T ss_dssp -EEE--ETTEEEEESSTTSCCEECCCCCBT-TTEEESSCCHHHHHHTTCSSCCEEECTTS----SEEEEEEEECTTSCEE
T ss_pred -EEE--ECCeEEEEeCCCCCcEEEecCCCc-CCeEcccccceeeeecccCcccEEECCCC----CEEEEEEECCCCCceE
Confidence 333 256999999988775322211100 00000000000 000001244432 1344444331
Q ss_pred ----------------------------cEEEEeCCCCCCc--e-----eeeeccccCeEEEEEeCCCCceEEEEc--CC
Q 016769 241 ----------------------------SILVWDIRNPGIP--L-----TAMKVHLEPVLCLSIDESCNGGISGGA--DQ 283 (383)
Q Consensus 241 ----------------------------~i~~wdl~~~~~~--~-----~~~~~h~~~v~~~~~~~~~~~~~s~~~--d~ 283 (383)
+|++||+.++... + ..+..|...+..+.|+|++..+++... ++
T Consensus 197 ~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~ 276 (719)
T 1z68_A 197 AYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQN 276 (719)
T ss_dssp EEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTT
T ss_pred EeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccC
Confidence 7889998764320 1 112357778899999999665555332 22
Q ss_pred --cEEEEE----ccCCCCeeEEeeeeecCCCCeE-----EEEECCCCcEEE--EEeCCC--cEEEEEcCCCceEEEeccc
Q 016769 284 --KIVLYN----LDHSTGSCVIKKEINLERPGIS-----GTSIRPDSKIAA--TAGWDR--RVRIYNYRKGSALAILKYH 348 (383)
Q Consensus 284 --~i~~wd----l~~~~~~~~~~~~~~~~~~~i~-----~~~~~p~~~~l~--s~~~dg--~i~iwd~~~~~~~~~~~~h 348 (383)
.|.+|| ++..............+...+. .+.|+|||+.++ +...++ .|.+||+..++ ...+..+
T Consensus 277 ~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~ 355 (719)
T 1z68_A 277 VSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG 355 (719)
T ss_dssp EEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS
T ss_pred eEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC
Confidence 377788 4432211111000012333344 788999999544 344555 46666776665 4456566
Q ss_pred ccceeEEEEeCCCCEEEEEeCC-----CcEEEEeCC
Q 016769 349 HATCNAVSFSSDCKLMASASED-----STVALWELY 379 (383)
Q Consensus 349 ~~~v~~v~~spd~~~las~s~d-----~~i~~w~~~ 379 (383)
...+..+.++ |++.|+..+.+ +.+++|.+.
T Consensus 356 ~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 356 KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 6678888888 88877666654 889999874
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-13 Score=126.29 Aligned_cols=270 Identities=11% Similarity=0.125 Sum_probs=158.3
Q ss_pred cCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecc----------cCCeEEEeecCCCCCCCCCeeee
Q 016769 37 TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWDIENGGLSSNPSLTI 106 (383)
Q Consensus 37 s~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~D~ti~~Wd~~~~~~~~~~~~~~ 106 (383)
..|+.|.+||..+++.+..+..+. .- .+++++ ++++++.+. .+++|.+||..+.+.. ..+
T Consensus 28 ~~d~~v~v~D~~t~~~~~~i~~g~---~p-~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~----~~i 97 (361)
T 2oiz_A 28 LTESRVHVYDYTNGKFLGMVPTAF---NG-HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE----KEI 97 (361)
T ss_dssp GGGCEEEEEETTTCCEEEEEECCE---EE-EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE----EEE
T ss_pred cccCeEEEEECCCCeEEEEecCCC---CC-ceEECC--CCCEEEEEEecccccccCCCCCEEEEEECcCCcEE----EEE
Confidence 357899999988777655443221 22 678888 466666553 4788999998765321 111
Q ss_pred ecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCC-cceEEE
Q 016769 107 KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQ-LSEVEI 185 (383)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~i~~ 185 (383)
.+...... .+ .......++++|+ ++.++... ++.|.+
T Consensus 98 ----------~~~~~~~~---------------~g----------------~~p~~i~~spdg~-~l~v~n~~~~~~v~v 135 (361)
T 2oiz_A 98 ----------SLPPKRVQ---------------GL----------------NYDGLFRQTTDGK-FIVLQNASPATSIGI 135 (361)
T ss_dssp ----------EECTTBCC---------------BC----------------CCGGGEEECTTSS-EEEEEEESSSEEEEE
T ss_pred ----------EcCccccc---------------cC----------------CCcceEEECCCCC-EEEEECCCCCCeEEE
Confidence 00000000 00 0000112445664 45555433 578999
Q ss_pred EecCCCCeeeE-eccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCcee------eee
Q 016769 186 WDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT------AMK 258 (383)
Q Consensus 186 Wdl~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~------~~~ 258 (383)
||+++++.+.. +.-.. +..+ .+.|.. ...+++.+.||.+.+|++...+.... .+.
T Consensus 136 ~d~~~~~~~~~~i~~~~--------------~~~v-~~~p~~---~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~ 197 (361)
T 2oiz_A 136 VDVAKGDYVEDVTAAAG--------------CWSV-IPQPNR---PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS 197 (361)
T ss_dssp EETTTTEEEEEEGGGTT--------------EEEE-EECTTS---SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred EECCCCcEEEEEecCCC--------------ccee-EEcCCC---CeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence 99999887666 43210 1111 122322 12466778899999999865333221 111
Q ss_pred ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeec----C----CCCeEEEEECCCCcEEEEEeC---
Q 016769 259 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL----E----RPGISGTSIRPDSKIAATAGW--- 327 (383)
Q Consensus 259 ~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~----~----~~~i~~~~~~p~~~~l~s~~~--- 327 (383)
.+..++ .+.+.+++..++..+.++.+.++|+............... . ..+...++|+|+++.+..+..
T Consensus 198 ~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~ 276 (361)
T 2oiz_A 198 VKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDG 276 (361)
T ss_dssp TTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSC
T ss_pred CCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCC
Confidence 122222 1222334455566677889999998644322111100000 0 011223789999877666543
Q ss_pred --------CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 328 --------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 328 --------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
.++|.+||+.+++.+.++..+. +.+++|+|||++|++++. +.|.+||+..
T Consensus 277 ~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 277 KEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp CTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred CcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence 3589999999999999988777 899999999999988887 9999999753
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-12 Score=114.15 Aligned_cols=115 Identities=14% Similarity=0.180 Sum_probs=83.5
Q ss_pred ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCC-cEEEEEcCCC
Q 016769 261 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR-RVRIYNYRKG 339 (383)
Q Consensus 261 ~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg-~i~iwd~~~~ 339 (383)
...+..+++++++..+++...++.|.+||.+. ..............+.+++++|+++++++...++ .|++||. ++
T Consensus 163 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g---~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g 238 (286)
T 1q7f_A 163 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG---QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DG 238 (286)
T ss_dssp CSSEEEEEECSSSEEEEEEGGGTEEEEEETTC---CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TS
T ss_pred cCCcEEEEECCCCCEEEEECCCCEEEEEcCCC---CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CC
Confidence 34567889998877556666789999999743 2211111111124688999999999888887776 9999995 56
Q ss_pred ceEEEeccccc--ceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 340 SALAILKYHHA--TCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 340 ~~~~~~~~h~~--~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+.+..+..+.. .+.+++|+|+|+++++ +.|+.|++|++..
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 239 QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 66666655433 4779999999987777 6799999999853
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-13 Score=126.80 Aligned_cols=307 Identities=14% Similarity=0.002 Sum_probs=164.8
Q ss_pred CCeeeeeecCCc-----eeeEEEeCCCCeEEEecCC---CeEEEeeCcccccccccccccccceeeeeeecCCCCcceeE
Q 016769 9 DPVAVLRGHRAS-----VTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (383)
Q Consensus 9 ~~~~~l~gH~~~-----V~~v~f~~~~~~L~sgs~D---~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (383)
+.+..|..+... +.+++|+|||++|+..+.+ ..|.+||+.+++...... + .........++| ++++|+
T Consensus 21 ~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~-~~~~~~~~~~sp--dg~~l~ 96 (396)
T 3c5m_A 21 VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-G-KGDNTFGGFIST--DERAFF 96 (396)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-S-SCBCTTTCEECT--TSSEEE
T ss_pred cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-C-CCCccccceECC--CCCEEE
Confidence 345556555444 8889999999987766443 468888987665332211 1 111112255677 467888
Q ss_pred ecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccc
Q 016769 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFE 160 (383)
Q Consensus 81 s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
.++.++.+.+||+++++.. .+......+ .......... ........ ..
T Consensus 97 ~~~~~~~l~~~d~~~~~~~-----~~~~~~~~~---~~~g~~l~~~----~~~~~~~~--------------------~~ 144 (396)
T 3c5m_A 97 YVKNELNLMKVDLETLEEQ-----VIYTVDEEW---KGYGTWVANS----DCTKLVGI--------------------EI 144 (396)
T ss_dssp EEETTTEEEEEETTTCCEE-----EEEECCTTE---EEEEEEEECT----TSSEEEEE--------------------EE
T ss_pred EEEcCCcEEEEECCCCCcE-----EEEeccccc---CCCCCEEEec----cCCccccc--------------------cc
Confidence 8888889999999876421 111100000 0000000000 00000000 00
Q ss_pred eecccCCCCCceeeecc----CCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEE
Q 016769 161 IIDDVPAEGPKYMAVAG----EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 236 (383)
Q Consensus 161 ~~~~~~~~~~~~~~~~g----~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 236 (383)
.....++++.. ++... ..+..|.+||+.+++......... . .....+.|. +...++..
T Consensus 145 ~~~~~spdg~~-~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~-----------~---~~~~~~sp~---dg~~l~~~ 206 (396)
T 3c5m_A 145 LKRDWQPLTSW-EKFAEFYHTNPTCRLIKVDIETGELEVIHQDTA-----------W---LGHPIYRPF---DDSTVGFC 206 (396)
T ss_dssp EGGGCCCCCSH-HHHHHHHHTCCCEEEEEEETTTCCEEEEEEESS-----------C---EEEEEEETT---EEEEEEEE
T ss_pred cccccCCCCcc-eeeeeeccCCCcceEEEEECCCCcEEeeccCCc-----------c---cccceECCC---CCCEEEEE
Confidence 00122344432 33221 345689999998877433222110 0 011123331 01123333
Q ss_pred eCC------CcEEEEeCCCCCCceeeeecc--ccCeEEEEEeCCCCceEEEEcC-----CcEEEEEccCCCCeeEEeeee
Q 016769 237 YED------GSILVWDIRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGGAD-----QKIVLYNLDHSTGSCVIKKEI 303 (383)
Q Consensus 237 ~~d------g~i~~wdl~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~s~~~d-----~~i~~wdl~~~~~~~~~~~~~ 303 (383)
+.+ ..|.+||+.... . ..+..+ ...+..+.|++++..++..+.+ +.|.+||++......+ ...
T Consensus 207 ~~~~~~~~~~~l~~~d~~~~~-~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l--~~~ 282 (396)
T 3c5m_A 207 HEGPHDLVDARMWLVNEDGSN-V-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV--MVM 282 (396)
T ss_dssp ECSCSSSCSCCCEEEETTSCC-C-EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE--EEC
T ss_pred ecCCCCCCCceEEEEECCCCc-e-eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe--eeC
Confidence 322 468888886532 2 222222 2357778999999887766543 4499999875432211 111
Q ss_pred ecCCCCeEEEEECC-CCcEEEEEe----------------CCCcEEEEEcCCCceEEEeccccc-----------ceeEE
Q 016769 304 NLERPGISGTSIRP-DSKIAATAG----------------WDRRVRIYNYRKGSALAILKYHHA-----------TCNAV 355 (383)
Q Consensus 304 ~~~~~~i~~~~~~p-~~~~l~s~~----------------~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~v 355 (383)
.... ..|+| |+++++.++ .+..|++||+.+++.. .+..|.. .+..+
T Consensus 283 ----~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~ 356 (396)
T 3c5m_A 283 ----PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHP 356 (396)
T ss_dssp ----CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCC
T ss_pred ----CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCc
Confidence 1233 88999 999888765 3478999999877643 3444443 25667
Q ss_pred EEeCCCCEEEEEeC-CCcEEEEeCC
Q 016769 356 SFSSDCKLMASASE-DSTVALWELY 379 (383)
Q Consensus 356 ~~spd~~~las~s~-d~~i~~w~~~ 379 (383)
+|+|||+.|+.++. ++...||.+.
T Consensus 357 ~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 357 SFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEE
T ss_pred eEccCCCeEEEEecCCCCceEEEEE
Confidence 89999998877664 6677777653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-12 Score=119.48 Aligned_cols=276 Identities=9% Similarity=0.032 Sum_probs=158.5
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEec----------CCCeEEEeeCccccccccccccc----ccceeeeeeecCCCC
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHS----AAHGIVSVATGPSIG 75 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs----------~D~~v~vW~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 75 (383)
.+.++..+..+ .++|+|||++|+++. .|+.|.+||..+.+.+..+.... .......+++++ +
T Consensus 43 ~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp--d 118 (361)
T 2oiz_A 43 FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT--D 118 (361)
T ss_dssp EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT--T
T ss_pred EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC--C
Confidence 34455555555 799999999999886 36789999988766655443221 011234567777 4
Q ss_pred cceeEecc--cCCeEEEeecCCCCCCCCCeee-eecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccc
Q 016769 76 LNKVISQG--RDGTVKCWDIENGGLSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS 152 (383)
Q Consensus 76 ~~~l~s~~--~D~ti~~Wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (383)
+++|+.+. .+++|.+||+++++... . +.... ++
T Consensus 119 g~~l~v~n~~~~~~v~v~d~~~~~~~~----~~i~~~~------------------------~~---------------- 154 (361)
T 2oiz_A 119 GKFIVLQNASPATSIGIVDVAKGDYVE----DVTAAAG------------------------CW---------------- 154 (361)
T ss_dssp SSEEEEEEESSSEEEEEEETTTTEEEE----EEGGGTT------------------------EE----------------
T ss_pred CCEEEEECCCCCCeEEEEECCCCcEEE----EEecCCC------------------------cc----------------
Confidence 67777654 36899999998753100 0 00000 00
Q ss_pred cccCCccceecccCCCCCceeeeccCCcceEEEEecCC-CCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCce
Q 016769 153 KESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 231 (383)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (383)
. ....++++..+ ++.+.++.+.+|+++. ++........ . .+........+ .+.+. +.
T Consensus 155 -------~--v~~~p~~~~~~-~~~~~dg~~~~v~~~~~g~~~~~~~~~-~----~~~~~~~~~~~---~~~~~---g~- 212 (361)
T 2oiz_A 155 -------S--VIPQPNRPRSF-MTICGDGGLLTINLGEDGKVASQSRSK-Q----MFSVKDDPIFI---APALD---KD- 212 (361)
T ss_dssp -------E--EEECTTSSSEE-EEEETTSSEEEEEECTTSSEEEEEECC-C----CSCTTTSCBCS---CCEEC---SS-
T ss_pred -------e--eEEcCCCCeeE-EEECCCCcEEEEEECCCCcEeeecccc-c----eEcCCCCceEE---Eeccc---CC-
Confidence 0 00112221112 2234467788888865 4332121100 0 00000000000 00111 11
Q ss_pred EEEEEeCCCcEEEEeCCCCCCce-eeeec------cc----cCeEEEEEeCCCCceEEEEc-----------CCcEEEEE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPL-TAMKV------HL----EPVLCLSIDESCNGGISGGA-----------DQKIVLYN 289 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~-~~~~~------h~----~~v~~~~~~~~~~~~~s~~~-----------d~~i~~wd 289 (383)
.++..+.++.|.++|+....... ..+.. +. .....+.+++++..++.+.. .+.|.+||
T Consensus 213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD 292 (361)
T 2oiz_A 213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMD 292 (361)
T ss_dssp EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEE
Confidence 23445578899999986533211 11110 00 11112678888777665432 34789999
Q ss_pred ccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCC--ceEEEecccccceeEEEEeCCCC
Q 016769 290 LDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG--SALAILKYHHATCNAVSFSSDCK 362 (383)
Q Consensus 290 l~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~v~~spd~~ 362 (383)
+...+ . ...+..+. ..+++|+||++++++++. ++|.+||..++ +.+.++..+......++|+|||+
T Consensus 293 ~~t~~--~--v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 293 TKTKQ--R--VARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTTTE--E--EEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCCCc--E--EEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 86542 2 22334443 889999999999998887 99999999999 98888766777888999999986
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-12 Score=116.24 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=84.9
Q ss_pred cCeEEEEEeCC-CCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEE-------eCCCcEEE
Q 016769 262 EPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA-------GWDRRVRI 333 (383)
Q Consensus 262 ~~v~~~~~~~~-~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~-------~~dg~i~i 333 (383)
.....++++++ +..+++...+++|++||.+.. ..............+..++|+| +..+++. ..+.+|++
T Consensus 196 ~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G--~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~ 272 (329)
T 3fvz_A 196 SVPHSLALVPHLDQLCVADRENGRIQCFKTDTK--EFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFV 272 (329)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTTC--CEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEE
T ss_pred CCCcEEEEECCCCEEEEEECCCCEEEEEECCCC--cEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEE
Confidence 34678999998 555566667889999998733 3222221223345688899999 4333333 34559999
Q ss_pred EEcCCCceEEEec---ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 334 YNYRKGSALAILK---YHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 334 wd~~~~~~~~~~~---~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
||..+++.+..+. ++...+..|+|+|||.++++...++.|++|++.
T Consensus 273 ~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 273 MNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 9999999888873 677789999999999999999999999999974
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=137.50 Aligned_cols=285 Identities=11% Similarity=0.088 Sum_probs=147.7
Q ss_pred CCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccc-cceee--eeeecCCCCcceeEecccC---------
Q 016769 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIV--SVATGPSIGLNKVISQGRD--------- 85 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~s~~~D--------- 85 (383)
.....+++|+|||++|+++ |++|++||+.++++...+..+.. ...+. .+.++| ++++++.++.+
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT--TSSEEEEEEEEEECSSSCEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC--CCCEEEEEECCeeeEEEccc
Confidence 4456789999999999986 99999999988876544333321 11222 256787 56788877776
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
+.+.+||+++++.... ... + .......+
T Consensus 92 ~~~~~~d~~~~~~~~l-----~~~------------~-----------------------------------~~~~~~~~ 119 (740)
T 4a5s_A 92 ASYDIYDLNKRQLITE-----ERI------------P-----------------------------------NNTQWVTW 119 (740)
T ss_dssp EEEEEEETTTTEECCS-----SCC------------C-----------------------------------TTEEEEEE
T ss_pred eEEEEEECCCCcEEEc-----ccC------------C-----------------------------------CcceeeEE
Confidence 4456999887642110 000 0 00111235
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCC-----CCceEEEEEeCCC
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS-----QGFVNVLAGYEDG 240 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~sg~~dg 240 (383)
+++|+.+..+ .++.|++||+.++... ++..+. .....+. . .++.. .+....+.=+-||
T Consensus 120 SPdG~~la~~---~~~~i~~~~~~~~~~~-~lt~~g--------~~~~~~~-g----~~~~v~~ee~~~~~~~~~wSpDg 182 (740)
T 4a5s_A 120 SPVGHKLAYV---WNNDIYVKIEPNLPSY-RITWTG--------KEDIIYN-G----ITDWVYEEEVFSAYSALWWSPNG 182 (740)
T ss_dssp CSSTTCEEEE---ETTEEEEESSTTSCCE-ECCSCC--------BTTTEEE-S----BCCHHHHHHTSSSSBCEEECTTS
T ss_pred CCCCCEEEEE---ECCeEEEEECCCCceE-EEcCCC--------Cccceec-C----cccccccchhcCCCcceEECCCC
Confidence 6777654332 5999999999887632 332110 0000000 0 00000 0000012224455
Q ss_pred cEEEE-eCCCCCCceeeeec------cccCeEEEEEeCCCCceEEEEcCCcEEEEEccC---CCCeeEEeeee----ecC
Q 016769 241 SILVW-DIRNPGIPLTAMKV------HLEPVLCLSIDESCNGGISGGADQKIVLYNLDH---STGSCVIKKEI----NLE 306 (383)
Q Consensus 241 ~i~~w-dl~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~---~~~~~~~~~~~----~~~ 306 (383)
.-..+ .........-.+.. +...+..+.+...+.. .....|.+||++. ........... ..+
T Consensus 183 ~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~ 258 (740)
T 4a5s_A 183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIG 258 (740)
T ss_dssp SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTS
T ss_pred CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCC
Confidence 43322 22111111111100 1122333333322211 1122578899876 42101111111 014
Q ss_pred CCCeEEEEECCCCcEEEEEeC----CCcEEEEEcCCCc----eE--EEe--ccccccee-----EEEEeCCCCEEE-EEe
Q 016769 307 RPGISGTSIRPDSKIAATAGW----DRRVRIYNYRKGS----AL--AIL--KYHHATCN-----AVSFSSDCKLMA-SAS 368 (383)
Q Consensus 307 ~~~i~~~~~~p~~~~l~s~~~----dg~i~iwd~~~~~----~~--~~~--~~h~~~v~-----~v~~spd~~~la-s~s 368 (383)
...+..++|+||++.++.... +.+|++||+.+++ +. ..+ ..|...+. ..+|+|||+.|+ ..+
T Consensus 259 ~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s 338 (740)
T 4a5s_A 259 DHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIIS 338 (740)
T ss_dssp CEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEE
T ss_pred CeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEE
Confidence 456889999999996665533 3479999998887 11 111 34665554 788999999877 665
Q ss_pred -CCC--cEEEEeCC
Q 016769 369 -EDS--TVALWELY 379 (383)
Q Consensus 369 -~d~--~i~~w~~~ 379 (383)
.+| .|.+||+.
T Consensus 339 ~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 339 NEEGYRHICYFQID 352 (740)
T ss_dssp CTTSCEEEEEEETT
T ss_pred cCCCceEEEEEECC
Confidence 444 45666653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.8e-13 Score=132.10 Aligned_cols=312 Identities=10% Similarity=-0.027 Sum_probs=163.5
Q ss_pred eeeeeecCC---ceeeEEEeCCCCeEEEecC---------CCeEEEeeCcccccccccccccccceeeeeeecCCCCcce
Q 016769 11 VAVLRGHRA---SVTDVCFHQTKPILFAGTT---------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK 78 (383)
Q Consensus 11 ~~~l~gH~~---~V~~v~f~~~~~~L~sgs~---------D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (383)
...+.+|.. .|.+++|||||++|++++. |+.|++||+.+++.+..... ...+..++++| ++++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SP--DG~~ 123 (719)
T 1z68_A 49 YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSP--VGSK 123 (719)
T ss_dssp EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECS--STTC
T ss_pred EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECC--CCCE
Confidence 334445544 4999999999999999887 79999999987765211111 12466788998 4677
Q ss_pred eEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCc
Q 016769 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRS 158 (383)
Q Consensus 79 l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (383)
|+.+. |++|++|++.+++.... + ....... +.... ...++.-+.. .
T Consensus 124 la~~~-~~~i~~~~~~~g~~~~l---~-~~~~~~~----v~~g~---------~~~v~~ee~~----------------~ 169 (719)
T 1z68_A 124 LAYVY-QNNIYLKQRPGDPPFQI---T-FNGRENK----IFNGI---------PDWVYEEEML----------------A 169 (719)
T ss_dssp EEEEE-TTEEEEESSTTSCCEEC---C-CCCBTTT----EEESS---------CCHHHHHHTT----------------C
T ss_pred EEEEE-CCeEEEEeCCCCCcEEE---e-cCCCcCC----eEccc---------ccceeeeecc----------------c
Confidence 77764 78999999987643110 0 0000000 00000 0000000000 0
Q ss_pred cceecccCCCCCceeeecc--------------------------------CCcceEEEEecCCCCee--eEeccCcCCC
Q 016769 159 FEIIDDVPAEGPKYMAVAG--------------------------------EQLSEVEIWDLNTAERC--TRLHQNSCGG 204 (383)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~g--------------------------------~~~~~i~~Wdl~~~~~~--~~~~~~~~~~ 204 (383)
......++++|+.++..+. .....|++||+.+++.. ..+....
T Consensus 170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~--- 246 (719)
T 1z68_A 170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA--- 246 (719)
T ss_dssp SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH---
T ss_pred CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc---
Confidence 0000112233332111111 11237899999887642 1221100
Q ss_pred CCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCC----CcEEEEe----CCCCCCceeee----eccccCeE-----EE
Q 016769 205 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----GSILVWD----IRNPGIPLTAM----KVHLEPVL-----CL 267 (383)
Q Consensus 205 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~d----g~i~~wd----l~~~~~~~~~~----~~h~~~v~-----~~ 267 (383)
.+.. ....... ..++|+ + ..+++.... ..|.+|| +.++. ....+ ..|...+. .+
T Consensus 247 --~~~~-~~~~~~~-~~~SpD---~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ 317 (719)
T 1z68_A 247 --MIAS-SDYYFSW-LTWVTD---E-RVCLQWLKRVQNVSVLSICDFREDWQTWD-CPKTQEHIEESRTGWAGGFFVSTP 317 (719)
T ss_dssp --HHHT-SCEEEEE-EEESSS---S-EEEEEEEESSTTEEEEEEEEECSSSSSEE-CCGGGEEEEECSSSCSSSSSCCCC
T ss_pred --cCCC-CcceEEE-eEEeCC---C-eEEEEEeccccCeEEEEEEcccCCCCCCc-eEEEEecccccCCceEccccCCcc
Confidence 0000 0111111 235554 2 234443322 2488899 65532 22233 34555555 77
Q ss_pred EEeCCCCceEE--EEcCCc--EEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC-----CcEEEEEcCC
Q 016769 268 SIDESCNGGIS--GGADQK--IVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD-----RRVRIYNYRK 338 (383)
Q Consensus 268 ~~~~~~~~~~s--~~~d~~--i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d-----g~i~iwd~~~ 338 (383)
.|++++..++. ...++. |.+||++... . ..+......+..+.+. +++.|+..+.+ +++++|.+..
T Consensus 318 ~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~---~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 318 VFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--A---IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EECTTSSCEEEEEECTTSCEEEEEESSCSTT--C---EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EECCCCCeEEEEEEccCCceEEEEEECCCCc--e---EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 89999886543 445664 5555654332 1 1222233456676666 77777666665 8899998864
Q ss_pred --Cc-eEEEec----ccccceeEEEEeCCCCEEEE-EeCC--CcEEEEeCC
Q 016769 339 --GS-ALAILK----YHHATCNAVSFSSDCKLMAS-ASED--STVALWELY 379 (383)
Q Consensus 339 --~~-~~~~~~----~h~~~v~~v~~spd~~~las-~s~d--~~i~~w~~~ 379 (383)
+. ....+. +|...+..+.|+||+++++. ++.+ ..+.+||+.
T Consensus 392 ~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~ 442 (719)
T 1z68_A 392 GSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR 442 (719)
T ss_dssp SSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred CCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence 32 123333 26667888999999997664 4444 367788764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-11 Score=122.93 Aligned_cols=137 Identities=15% Similarity=0.044 Sum_probs=87.3
Q ss_pred CcEEEEeCCCCC---CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecC------CCCe
Q 016769 240 GSILVWDIRNPG---IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE------RPGI 310 (383)
Q Consensus 240 g~i~~wdl~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~------~~~i 310 (383)
..|.+||+...+ ........|...+..+.|++++..+++++.++..+||.++..++........... ...+
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~ 296 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGM 296 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTC
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccC
Confidence 479999998323 3333334456788999999999866777778855555444323322111111000 0115
Q ss_pred EEEEECCCCcEEEEEeCCCcEEEE--EcCCCceEEEecccccceeEE-EEeCCCCEEEEEeCCCcEEEEeC
Q 016769 311 SGTSIRPDSKIAATAGWDRRVRIY--NYRKGSALAILKYHHATCNAV-SFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 311 ~~~~~~p~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~h~~~v~~v-~~spd~~~las~s~d~~i~~w~~ 378 (383)
..++|+|+++++++++. ++++|| |+..++ +..+..|...+..+ +++++.-.+++++.+....+|.+
T Consensus 297 ~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 297 RWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp CSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred ceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 67899999999999998 999999 444444 67777787777776 55444335566777766666644
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-12 Score=115.15 Aligned_cols=196 Identities=14% Similarity=0.191 Sum_probs=117.9
Q ss_pred cCCCCCceeeecc-CCcceEEEEecCCCCe--eeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEe-CCC
Q 016769 165 VPAEGPKYMAVAG-EQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG 240 (383)
Q Consensus 165 ~~~~~~~~~~~~g-~~~~~i~~Wdl~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~-~dg 240 (383)
++++++ +++++. +.++.|++||+.++.. +..+.... .....+ .+.|+ +. .+++++ .++
T Consensus 47 ~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~----------~~p~~~---a~spd---g~-~l~~~~~~~~ 108 (347)
T 3hfq_A 47 LSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG----------TPPAYV---AVDEA---RQ-LVYSANYHKG 108 (347)
T ss_dssp ECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES----------CCCSEE---EEETT---TT-EEEEEETTTT
T ss_pred EccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC----------CCCEEE---EECCC---CC-EEEEEeCCCC
Confidence 345555 333332 2368999999976652 22221110 011111 23333 22 355544 789
Q ss_pred cEEEEeCCCCCCc--eeeeec---------cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeec-CCC
Q 016769 241 SILVWDIRNPGIP--LTAMKV---------HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-ERP 308 (383)
Q Consensus 241 ~i~~wdl~~~~~~--~~~~~~---------h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~-~~~ 308 (383)
.|.+||+...+.. +..+.. +...+.++.+++++..+++...++.|.+|+++.. +.......... ...
T Consensus 109 ~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~-g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 109 TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA-GQLSEQSVLTMEAGF 187 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT-SCEEEEEEEECCTTC
T ss_pred EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC-CcEEEeeeEEcCCCC
Confidence 9999999643321 122211 1123778999999984444556788999999832 22222222222 233
Q ss_pred CeEEEEECCCCcEEEE-EeCCCcEEEEEcCC--Cce--EEEecccc------cceeEEEEeCCCCEE-EEEeCCCcEEEE
Q 016769 309 GISGTSIRPDSKIAAT-AGWDRRVRIYNYRK--GSA--LAILKYHH------ATCNAVSFSSDCKLM-ASASEDSTVALW 376 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s-~~~dg~i~iwd~~~--~~~--~~~~~~h~------~~v~~v~~spd~~~l-as~s~d~~i~~w 376 (383)
....++|+|||+++++ ...++.|++|+++. ++. +..+.... ..+..++|+|||++| ++...++.|.+|
T Consensus 188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~ 267 (347)
T 3hfq_A 188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVF 267 (347)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEE
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEE
Confidence 6788999999996555 56789999999974 442 22232222 348889999999976 667779999999
Q ss_pred eCC
Q 016769 377 ELY 379 (383)
Q Consensus 377 ~~~ 379 (383)
++.
T Consensus 268 ~~~ 270 (347)
T 3hfq_A 268 AVT 270 (347)
T ss_dssp EEC
T ss_pred EEC
Confidence 985
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-11 Score=105.40 Aligned_cols=258 Identities=12% Similarity=0.053 Sum_probs=150.1
Q ss_pred CCeeeeeecCCceeeEEEeCCCC-eEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~-~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
..+.++..+.....+++|+|+++ +++++..++.|.+|+..++ ...... ....+.++++.+ +++.+++...++.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~--~~~~~~~l~~~~--dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH--PSHHQNGHCLNK--QGHLIACSHGLRR 91 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES--SCSSEEEEEECT--TCCEEEEETTTTE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC--CCCCcceeeECC--CCcEEEEecCCCe
Confidence 34566777888889999999998 8889999999999998765 222211 223456777777 4566677777889
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
|.+||..++.... + ....... .... ..-..+.+
T Consensus 92 i~~~d~~~g~~~~-----~------------~~~~~~~--~~~~----------------------------~~~i~~d~ 124 (296)
T 3e5z_A 92 LERQREPGGEWES-----I------------ADSFEGK--KLNS----------------------------PNDVCLAP 124 (296)
T ss_dssp EEEECSTTCCEEE-----E------------ECEETTE--ECCC----------------------------CCCEEECT
T ss_pred EEEEcCCCCcEEE-----E------------eeccCCC--CCCC----------------------------CCCEEECC
Confidence 9999987663100 0 0000000 0000 00000112
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
+|. ++++. ...++...++ .. .. . .....+.|..+|.
T Consensus 125 ~G~-l~vtd-~~~g~~~~~~---~~-----~~-------~---------------------------~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 125 DGS-LWFSD-PTYGIDKPEE---GY-----GG-------E---------------------------MELPGRWVFRLAP 160 (296)
T ss_dssp TSC-EEEEE-CSHHHHCGGG---SS-----CC-------C---------------------------CCSSSCEEEEECT
T ss_pred CCC-EEEEC-Cccccccccc---cc-----cc-------c---------------------------ccCCCcEEEEECC
Confidence 222 11110 0000000000 00 00 0 0000223333443
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCee-EEeeeeecCCCCeEEEEECCCCcEEEEEe
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC-VIKKEINLERPGISGTSIRPDSKIAATAG 326 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~s~~ 326 (383)
. +. ...+..+......+++++++..+++.+.++.|.+|+++. ++.. ............+.+++++++|++.++.
T Consensus 161 ~--g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~-~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~- 235 (296)
T 3e5z_A 161 D--GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA-RGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA- 235 (296)
T ss_dssp T--SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS-SSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred C--CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC-CCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence 2 11 223334455667899999998876666788999999872 2222 1111112233456789999999877665
Q ss_pred CCCcEEEEEcCCCceEEEecccccceeEEEE-eCCCCEEEEEeCCC
Q 016769 327 WDRRVRIYNYRKGSALAILKYHHATCNAVSF-SSDCKLMASASEDS 371 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~-spd~~~las~s~d~ 371 (383)
++.|.+||.+ ++.+..+..+.. +.+++| +||++.|..++.++
T Consensus 236 -~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 236 -GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp -TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred -CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 8899999986 777777877777 999999 58999888888874
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.2e-12 Score=113.15 Aligned_cols=153 Identities=8% Similarity=0.041 Sum_probs=96.3
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
+++++..++.|++||+.+++.+..+..... + ....+ .+.|+ +...++++..++.|.+||+.+..
T Consensus 13 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-----~----~~~~~---~~s~d---g~~~~v~~~~~~~i~~~d~~t~~- 76 (349)
T 1jmx_B 13 YMIVTNYPNNLHVVDVASDTVYKSCVMPDK-----F----GPGTA---MMAPD---NRTAYVLNNHYGDIYGIDLDTCK- 76 (349)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECSSC-----C----SSCEE---EECTT---SSEEEEEETTTTEEEEEETTTTE-
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEecCCC-----C----CCcee---EECCC---CCEEEEEeCCCCcEEEEeCCCCc-
Confidence 344555678999999999887666542110 0 00111 23333 22234566778999999998643
Q ss_pred ceeeeecc------ccCeEEEEEeCCCCceEEEEcC------------CcEEEEEccCCCCeeEEeeeeecCCCCeEEEE
Q 016769 253 PLTAMKVH------LEPVLCLSIDESCNGGISGGAD------------QKIVLYNLDHSTGSCVIKKEINLERPGISGTS 314 (383)
Q Consensus 253 ~~~~~~~h------~~~v~~~~~~~~~~~~~s~~~d------------~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~ 314 (383)
....+..+ ...+..+.++++++.+++++.+ +.|.+||+......... .... ....+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~-~~~~~~~~~ 154 (349)
T 1jmx_B 77 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV-RTFP-MPRQVYLMR 154 (349)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-EEEE-CCSSCCCEE
T ss_pred EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee-eecc-CCCccccee
Confidence 33334322 2236788999999988888765 89999999752211111 1111 223578899
Q ss_pred ECCCCcEEEEEeCCCcEEEEEcCCCceEEEec
Q 016769 315 IRPDSKIAATAGWDRRVRIYNYRKGSALAILK 346 (383)
Q Consensus 315 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 346 (383)
|+|+++ +++++ +.|++||+.+++....+.
T Consensus 155 ~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 155 AADDGS-LYVAG--PDIYKMDVKTGKYTVALP 183 (349)
T ss_dssp ECTTSC-EEEES--SSEEEECTTTCCEEEEEC
T ss_pred ECCCCc-EEEcc--CcEEEEeCCCCceecccc
Confidence 999999 55554 349999999888766554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-11 Score=110.42 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=97.3
Q ss_pred CCCcEEEEeCCCCCCceeeee----ccccCeEEEEEeCCCCceEEEEc-CCcEEEEEccCCCCeeEEeeeeec--CCCCe
Q 016769 238 EDGSILVWDIRNPGIPLTAMK----VHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINL--ERPGI 310 (383)
Q Consensus 238 ~dg~i~~wdl~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~~~~~~~--~~~~i 310 (383)
.++++.+|++...+.....+. .+...+..+.|+++++.+++++. ++.|.+|+++. ++.......... +...+
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLA-SGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT-TSCEEEEEEEECSSTTCCE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECC-CCCEEEeeeEecCCCCCCC
Confidence 689999999975343333333 13457889999999988777654 67899999973 233222222221 24568
Q ss_pred EEEEECCCCcEEEEEeC-CCcEEEEEcC--CCceE------EEec----cccc------ceeEEE-EeCCCCEEEEEeCC
Q 016769 311 SGTSIRPDSKIAATAGW-DRRVRIYNYR--KGSAL------AILK----YHHA------TCNAVS-FSSDCKLMASASED 370 (383)
Q Consensus 311 ~~~~~~p~~~~l~s~~~-dg~i~iwd~~--~~~~~------~~~~----~h~~------~v~~v~-~spd~~~las~s~d 370 (383)
..++|+|||+++++++. +++|.+|+++ +++.. ..+. +|.. .+..++ |+|||++|++++.+
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 99999999999887775 7899999875 45532 1221 2222 588999 99999988776643
Q ss_pred C------cEEEEeCC
Q 016769 371 S------TVALWELY 379 (383)
Q Consensus 371 ~------~i~~w~~~ 379 (383)
. .|.+|++.
T Consensus 276 ~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 276 NKFELQGYIAGFKLR 290 (365)
T ss_dssp SSTTSCCEEEEEEEC
T ss_pred CCCCCCCeEEEEEEC
Confidence 3 89999985
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-10 Score=115.49 Aligned_cols=139 Identities=8% Similarity=-0.009 Sum_probs=87.1
Q ss_pred CCcEEEEeCCC------CCCceeeeeccccCeEEEEEeCCCCceEEEEcC----CcEEEEEccCCCCeeEEeeeeecCC-
Q 016769 239 DGSILVWDIRN------PGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD----QKIVLYNLDHSTGSCVIKKEINLER- 307 (383)
Q Consensus 239 dg~i~~wdl~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d----~~i~~wdl~~~~~~~~~~~~~~~~~- 307 (383)
+..|.+||+.+ +......+..+...+.. .+++++..++..+.+ ..|.+||++....... ..+..+.
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~--~~l~~~~~ 334 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW--KVLVPEHE 334 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC--EEEECCCS
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc--eeccCCCC
Confidence 45677777654 22123344445444433 356666666544432 3588898875431100 1111122
Q ss_pred -CCeEEEEECCCCcEEEEEeCCCc--EEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEE-e---CCCcEEEEeCCC
Q 016769 308 -PGISGTSIRPDSKIAATAGWDRR--VRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASA-S---EDSTVALWELYP 380 (383)
Q Consensus 308 -~~i~~~~~~p~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~-s---~d~~i~~w~~~~ 380 (383)
..+.++++++++.+++++..|+. |++||+.+++.+..+..+...+..++++|+++.++.. + ..+.|.+||+..
T Consensus 335 ~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 25778888888888899888985 5556776788777787788888999999999865532 2 346889998853
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-09 Score=94.27 Aligned_cols=115 Identities=12% Similarity=0.024 Sum_probs=82.3
Q ss_pred CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceE
Q 016769 263 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL 342 (383)
Q Consensus 263 ~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~ 342 (383)
....+.+++++...++...++.|.+||.+.... . .........+.++++.++|..+++...++.|.+||.......
T Consensus 151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~--~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~ 226 (270)
T 1rwi_B 151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--V--VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST 226 (270)
T ss_dssp SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE--E--ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE
T ss_pred CceeEEEeCCCCEEEEECCCCEEEEEecCCCce--E--eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce
Confidence 445677887776445555577899998764321 1 111112256889999999988887777899999999765443
Q ss_pred EEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 343 AILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 343 ~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
.....+...+.+++++|+|+++++.+.++.|+++++..+
T Consensus 227 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 227 VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred eeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 322234467899999999999999999999999998643
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-10 Score=114.82 Aligned_cols=98 Identities=8% Similarity=-0.027 Sum_probs=64.8
Q ss_pred CCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcC-CCceEEEeccc-ccceeEEEEeC
Q 016769 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR-KGSALAILKYH-HATCNAVSFSS 359 (383)
Q Consensus 282 d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~v~~sp 359 (383)
++.|.+||++..................+.+++++ ++.++++...|++.+||.++ +++....+..+ ...+..++++|
T Consensus 294 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~ 372 (695)
T 2bkl_A 294 RQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLE 372 (695)
T ss_dssp TCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCT
T ss_pred CCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCC
Confidence 57788898865431100011111113357778887 77889999999999998775 46656666555 66788889999
Q ss_pred CCCEEE----EEeCCCcEEEEeCCC
Q 016769 360 DCKLMA----SASEDSTVALWELYP 380 (383)
Q Consensus 360 d~~~la----s~s~d~~i~~w~~~~ 380 (383)
|++.++ +....+.|++||+..
T Consensus 373 d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 373 DLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp TCSEEEEEEEETTEEEEEEEEETTT
T ss_pred CCCEEEEEEcCCCCCCEEEEEECCC
Confidence 998766 333346899999853
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-08 Score=91.83 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=72.4
Q ss_pred cCeEEEEEeCCCCceEE-EEcCCcEEEEEccCCCCe-eEEeee-e-ecC-CCCeEEEEECCCCcEEEEEeCCCcEEEEEc
Q 016769 262 EPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGS-CVIKKE-I-NLE-RPGISGTSIRPDSKIAATAGWDRRVRIYNY 336 (383)
Q Consensus 262 ~~v~~~~~~~~~~~~~s-~~~d~~i~~wdl~~~~~~-~~~~~~-~-~~~-~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~ 336 (383)
..+..+.+++++..++. ...++.|.+||++..... ..+... . ... ...+..++++++++++++...++.|.+||.
T Consensus 182 ~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 182 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 34677889998875544 445788999998642211 111101 1 111 135788999999998888888899999998
Q ss_pred CCCceEEEeccccc------ceeEEEEeCCCCEEEEEeCC
Q 016769 337 RKGSALAILKYHHA------TCNAVSFSSDCKLMASASED 370 (383)
Q Consensus 337 ~~~~~~~~~~~h~~------~v~~v~~spd~~~las~s~d 370 (383)
+++.+..+..+.. .+.+++|+||++.|..++.+
T Consensus 262 -~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 262 -RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp -TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred -CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 5666666654432 68999999998766554444
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.5e-09 Score=100.54 Aligned_cols=285 Identities=15% Similarity=0.064 Sum_probs=168.1
Q ss_pred eCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecC--CCCCCCCCee
Q 016769 27 HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE--NGGLSSNPSL 104 (383)
Q Consensus 27 ~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~--~~~~~~~~~~ 104 (383)
.|.+.++++...+++|.++|..+++.+..+..... ...+.+++ +++++++++.|++|.+||+. +++. ..
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~---p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~----v~ 234 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA---VHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTT----VA 234 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSC---EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCE----EE
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCC---ccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcE----eE
Confidence 45556788889999999999988776655443322 23567887 46788888899999999985 3321 00
Q ss_pred eeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccC----CCCCceeeeccCCc
Q 016769 105 TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP----AEGPKYMAVAGEQL 180 (383)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~ 180 (383)
.+..+.. + .-..++ ++| +++.++....
T Consensus 235 ~i~~G~~----------P--------------------------------------~~ia~s~~~~pDG-k~l~v~n~~~ 265 (567)
T 1qks_A 235 EIKIGSE----------A--------------------------------------RSIETSKMEGWED-KYAIAGAYWP 265 (567)
T ss_dssp EEECCSE----------E--------------------------------------EEEEECCSTTCTT-TEEEEEEEET
T ss_pred EEecCCC----------C--------------------------------------ceeEEccccCCCC-CEEEEEEccC
Confidence 1110000 0 001123 244 4677777777
Q ss_pred ceEEEEecCCCCeeeEeccCcC-CCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCc-eeeee
Q 016769 181 SEVEIWDLNTAERCTRLHQNSC-GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP-LTAMK 258 (383)
Q Consensus 181 ~~i~~Wdl~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~-~~~~~ 258 (383)
+.+.++|..+.+.+..+.-... .....+.+..+. .++. ..+. +...++.-..+|.|.++|....... +..+.
T Consensus 266 ~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv--a~i~-~s~~---~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~ 339 (567)
T 1qks_A 266 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV--AAIL-ASHY---RPEFIVNVKETGKILLVDYTDLNNLKTTEIS 339 (567)
T ss_dssp TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE--EEEE-ECSS---SSEEEEEETTTTEEEEEETTCSSEEEEEEEE
T ss_pred CeEEEEECCCCcEEEEEeccccccccccccCCCce--EEEE-EcCC---CCEEEEEecCCCeEEEEecCCCccceeeeee
Confidence 8999999999887766542110 000000011111 1111 1221 2234556677899999998764321 11121
Q ss_pred ccccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCCeeEEeeee-e--cCCC-CeEEEEECCCCcEE-EEEe-CCCcE
Q 016769 259 VHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEI-N--LERP-GISGTSIRPDSKIA-ATAG-WDRRV 331 (383)
Q Consensus 259 ~h~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~~-~--~~~~-~i~~~~~~p~~~~l-~s~~-~dg~i 331 (383)
.......+.|+++++++++++ .++.|.++|+.... ....... . .+.+ +++ .++|++..+ +++. .+++|
T Consensus 340 -~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k--l~~~i~vgg~~Phpg~g~~--~~~p~~g~v~~t~~~g~~~V 414 (567)
T 1qks_A 340 -AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK--LVAIEDTGGQTPHPGRGAN--FVHPTFGPVWATSHMGDDSV 414 (567)
T ss_dssp -CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE--EEEEEECSSSSBCCTTCEE--EEETTTEEEEEEEBSSSSEE
T ss_pred -ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc--EEEEEeccCcCCCCcccee--eECCCCCcEEEeCCCCCCeE
Confidence 123345778999999876655 57889999987542 2211111 1 1111 222 268875544 4443 46899
Q ss_pred EEEEcCC-------CceEEEecccccceeEEEEeCCCCEEEEEeC-------CCcEEEEeCCC
Q 016769 332 RIYNYRK-------GSALAILKYHHATCNAVSFSSDCKLMASASE-------DSTVALWELYP 380 (383)
Q Consensus 332 ~iwd~~~-------~~~~~~~~~h~~~v~~v~~spd~~~las~s~-------d~~i~~w~~~~ 380 (383)
.++|.++ .+.+.++......-..+.++||+++|-.... .+.|.++|+..
T Consensus 415 svid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 415 ALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp EEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred EEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 9999987 5566776654333355778999998776553 35899999853
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.9e-09 Score=95.59 Aligned_cols=121 Identities=10% Similarity=0.068 Sum_probs=77.0
Q ss_pred cEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCC--------cEEEEEccCCCCeeEEeeeeecCCCCeEE
Q 016769 241 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ--------KIVLYNLDHSTGSCVIKKEINLERPGISG 312 (383)
Q Consensus 241 ~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~--------~i~~wdl~~~~~~~~~~~~~~~~~~~i~~ 312 (383)
...||.+.+ +. ...+..+ ..+..+ ++++..++..+.+. .|.+|| ++... .....+...+..
T Consensus 199 ~~~l~~~d~-~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d----~~~~~--~l~~~~~~~~~~ 267 (347)
T 2gop_A 199 FWDIYIWED-GK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD----GKEVM--GILDEVDRGVGQ 267 (347)
T ss_dssp CEEEEEEET-TE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC----SSCEE--ESSTTCCSEEEE
T ss_pred cccEEEeCC-Cc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC----CCceE--eccccCCcccCC
Confidence 345554442 33 2334334 444444 77888777766443 466665 22211 112223345665
Q ss_pred -EEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcE-EEEeC
Q 016769 313 -TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTV-ALWEL 378 (383)
Q Consensus 313 -~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i-~~w~~ 378 (383)
+.|+ |+ ++++++.+++++|| +.+++.. .+..+...|.+++|+| +++++++.++.. +||.+
T Consensus 268 ~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 268 AKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp EEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred ccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 8899 88 88999999999999 8866554 3444577899999999 777777777765 78865
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-08 Score=87.50 Aligned_cols=283 Identities=5% Similarity=-0.055 Sum_probs=159.2
Q ss_pred eeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeec
Q 016769 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (383)
Q Consensus 14 l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~ 93 (383)
+..+...+.+|+++++|++.++...++.|.+||.. ++. ..............+++.+ ++..+++...++.|..||.
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYPLPTPDAKVMCLTISS--DGEVWFTENAANKIGRITK 85 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEecCCcccCceeeEEECC--CCCEEEeCCCCCeEEEECC
Confidence 44566789999999999988877778999999987 332 1111111123455667766 3566677677888999987
Q ss_pred CCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCcee
Q 016769 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYM 173 (383)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (383)
+ +.. .. +.+ +.. ... .......+++. ++
T Consensus 86 ~-g~~-----~~----------~~~---~~~-------~~~-------------------------~~~i~~~~~g~-l~ 113 (299)
T 2z2n_A 86 K-GII-----KE----------YTL---PNP-------DSA-------------------------PYGITEGPNGD-IW 113 (299)
T ss_dssp T-SCE-----EE----------EEC---SST-------TCC-------------------------EEEEEECTTSC-EE
T ss_pred C-CcE-----EE----------EeC---CCc-------CCC-------------------------ceeeEECCCCC-EE
Confidence 5 210 00 000 000 000 00001123333 22
Q ss_pred eeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCc
Q 016769 174 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 253 (383)
Q Consensus 174 ~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~ 253 (383)
++...++.|..||. +++.. ...... .......+. +.+ .+. ..++...++.|..||. +....
T Consensus 114 -v~~~~~~~i~~~d~-~g~~~-~~~~~~--------~~~~~~~i~---~~~---~g~-l~v~~~~~~~i~~~~~-~g~~~ 174 (299)
T 2z2n_A 114 -FTEMNGNRIGRITD-DGKIR-EYELPN--------KGSYPSFIT---LGS---DNA-LWFTENQNNAIGRITE-SGDIT 174 (299)
T ss_dssp -EEETTTTEEEEECT-TCCEE-EEECSS--------TTCCEEEEE---ECT---TSC-EEEEETTTTEEEEECT-TCCEE
T ss_pred -EEecCCceEEEECC-CCCEE-EecCCC--------CCCCCceEE---EcC---CCC-EEEEeCCCCEEEEEcC-CCcEE
Confidence 33333567888988 44422 111100 000111111 111 222 3444555788999998 43221
Q ss_pred eeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEE
Q 016769 254 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 333 (383)
Q Consensus 254 ~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~i 333 (383)
......+...+..+.+++++...++...++.|.+||. ... ... .........+.++++.++++..++...++.|..
T Consensus 175 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 250 (299)
T 2z2n_A 175 EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE--ITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGR 250 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc--EEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEE
Confidence 1112233456778999988765454445788999987 322 211 112223356889999999997776667899999
Q ss_pred EEcCCCceEE-EecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 334 YNYRKGSALA-ILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 334 wd~~~~~~~~-~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
||. +++... .+..+...+.++++ ++|++.++.+. +.|..++.
T Consensus 251 ~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~-~~l~~~~~ 293 (299)
T 2z2n_A 251 LTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMEC-DKIGKLTL 293 (299)
T ss_dssp EET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETT-TEEEEEEE
T ss_pred ECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecC-CcEEEEEc
Confidence 998 454322 23345567899999 99988777664 45555554
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.20 E-value=5.3e-10 Score=112.33 Aligned_cols=191 Identities=9% Similarity=0.038 Sum_probs=120.5
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcC-CCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCC-----
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSC-GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----- 239 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~d----- 239 (383)
.+++ ++++. + +++|++||+.+++....+..... .....+ .-..++|+. ..++.++.+
T Consensus 25 ~~dg-~~~~~-~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Spdg----~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 25 ISDH-EYLYK-Q--ENNILVFNAEYGNSSVFLENSTFDEFGHSI---------NDYSISPDG----QFILLEYNYVKQWR 87 (740)
T ss_dssp CSSS-EEEEE-E--TTEEEEEETTTCCEEEEECTTTTTTCCSCC---------CEEEECTTS----SEEEEEEEEEECSS
T ss_pred CCCC-cEEEE-c--CCcEEEEECCCCceEEEEechhhhhhcccc---------cceEECCCC----CEEEEEECCeeeEE
Confidence 3454 34443 3 78999999999886554443211 000000 001234432 245555554
Q ss_pred ----CcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCC--------
Q 016769 240 ----GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER-------- 307 (383)
Q Consensus 240 ----g~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~-------- 307 (383)
+.+.+||+.++. ...+..|...+....|+|+++.++.+ .|+.|.+|++....... +. .....
T Consensus 88 ~~~~~~~~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~-lt--~~g~~~~~~~g~~ 161 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR-IT--WTGKEDIIYNGIT 161 (740)
T ss_dssp SCEEEEEEEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE-CC--SCCBTTTEEESBC
T ss_pred EccceEEEEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE-Ec--CCCCccceecCcc
Confidence 567799998743 33456677789999999999988776 57899999987543221 11 11111
Q ss_pred ---------CCeEEEEECCCCcEEEEEeCCC------------------------------------cEEEEEcCC---C
Q 016769 308 ---------PGISGTSIRPDSKIAATAGWDR------------------------------------RVRIYNYRK---G 339 (383)
Q Consensus 308 ---------~~i~~~~~~p~~~~l~s~~~dg------------------------------------~i~iwd~~~---~ 339 (383)
.....+.|||||++||.++.|. +|++||+.+ +
T Consensus 162 ~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~ 241 (740)
T 4a5s_A 162 DWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSV 241 (740)
T ss_dssp CHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSS
T ss_pred cccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCC
Confidence 1123588999999999886432 488899988 7
Q ss_pred c--eEEEec------ccccceeEEEEeCCCCEEEEEeC----CCcEEEEeCC
Q 016769 340 S--ALAILK------YHHATCNAVSFSSDCKLMASASE----DSTVALWELY 379 (383)
Q Consensus 340 ~--~~~~~~------~h~~~v~~v~~spd~~~las~s~----d~~i~~w~~~ 379 (383)
+ ....+. +|...+..++|||||+.++.... +..|.+||+.
T Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 242 TNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293 (740)
T ss_dssp SCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred CcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC
Confidence 2 222333 37888999999999996665432 3478999874
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.20 E-value=7e-09 Score=93.60 Aligned_cols=184 Identities=8% Similarity=0.003 Sum_probs=112.8
Q ss_pred eccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEe-CCCcEEEEeCCCCCCc
Q 016769 175 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGIP 253 (383)
Q Consensus 175 ~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~-~dg~i~~wdl~~~~~~ 253 (383)
++...++.|.+||+.+++....+.-.... ........++ + . . ....++.. .++.|.++|+++.. .
T Consensus 99 v~~~~~~~v~~iD~~t~~~~~~i~~g~~~---~~~~~p~~i~--~-----~--~-~~lyv~~~~~~~~v~viD~~t~~-~ 164 (328)
T 3dsm_A 99 VTQIWDYRIFIINPKTYEITGYIECPDMD---MESGSTEQMV--Q-----Y--G-KYVYVNCWSYQNRILKIDTETDK-V 164 (328)
T ss_dssp EEEBSCSEEEEEETTTTEEEEEEECTTCC---TTTCBCCCEE--E-----E--T-TEEEEEECTTCCEEEEEETTTTE-E
T ss_pred EEECCCCeEEEEECCCCeEEEEEEcCCcc---ccCCCcceEE--E-----E--C-CEEEEEcCCCCCEEEEEECCCCe-E
Confidence 33334679999999998866555421100 0000111222 1 0 1 12234443 48899999998743 3
Q ss_pred eeeeeccccCeEEEEEeCCCCceEEEEcC----------CcEEEEEccCCCCeeEEeeeeecC-CCCeEEEEECCCCcEE
Q 016769 254 LTAMKVHLEPVLCLSIDESCNGGISGGAD----------QKIVLYNLDHSTGSCVIKKEINLE-RPGISGTSIRPDSKIA 322 (383)
Q Consensus 254 ~~~~~~h~~~v~~~~~~~~~~~~~s~~~d----------~~i~~wdl~~~~~~~~~~~~~~~~-~~~i~~~~~~p~~~~l 322 (383)
...+.... ....+.+++++..++++..+ +.|.++|.+.. ... ..+... ......++|+|+++++
T Consensus 165 ~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~--~v~--~~~~~~~g~~p~~la~~~d~~~l 239 (328)
T 3dsm_A 165 VDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF--TVE--KQFKFKLGDWPSEVQLNGTRDTL 239 (328)
T ss_dssp EEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT--EEE--EEEECCTTCCCEEEEECTTSCEE
T ss_pred EEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC--eEE--EEEecCCCCCceeEEEecCCCEE
Confidence 44444322 33567888887755554443 67999987643 222 222221 2368899999999988
Q ss_pred EEEeCCCcEEEEEcCCCceEE--EecccccceeEEEEeC-CCCEEEEE----eCCCcEEEEeCC
Q 016769 323 ATAGWDRRVRIYNYRKGSALA--ILKYHHATCNAVSFSS-DCKLMASA----SEDSTVALWELY 379 (383)
Q Consensus 323 ~s~~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~v~~sp-d~~~las~----s~d~~i~~w~~~ 379 (383)
..+.. +|.+||..+++... .+..+......++++| +++++++. ..++.|.+||..
T Consensus 240 yv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 240 YWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 77654 89999998877532 1222245688999999 56677777 788999999874
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=4.4e-08 Score=89.39 Aligned_cols=282 Identities=13% Similarity=0.086 Sum_probs=164.8
Q ss_pred eEEEeCCCCeEEEecC-----CCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecc----------cCCe
Q 016769 23 DVCFHQTKPILFAGTT-----GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGT 87 (383)
Q Consensus 23 ~v~f~~~~~~L~sgs~-----D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~D~t 87 (383)
.....|+++.|+.... ++.|.+.|..+.+.+..+...... .+.++| ++++++.+. .+++
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P----~va~sp--DG~~lyVan~~~~r~~~G~~~~~ 110 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP----NPVVAD--DGSFIAHASTVFSRIARGERTDY 110 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC----EEEECT--TSSCEEEEEEEEEETTEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC----cEEECC--CCCEEEEEcccccccccCCCCCE
Confidence 3566899998887755 679999999887776655433222 267777 456665443 4688
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeecc-ccccccccCCCCccceeccCcccccCccccccccCCccceecccC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE-PYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVP 166 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
|.+||..+.+... .+ . +.. ... . . +.......++
T Consensus 111 VsviD~~t~~v~~----~I----------~-v~~g~r~---~-----------~----------------g~~P~~~a~s 145 (386)
T 3sjl_D 111 VEVFDPVTLLPTA----DI----------E-LPDAPRF---L-----------V----------------GTYPWMTSLT 145 (386)
T ss_dssp EEEECTTTCCEEE----EE----------E-ETTCCCC---C-----------B----------------SCCGGGEEEC
T ss_pred EEEEECCCCeEEE----EE----------E-CCCcccc---c-----------c----------------CCCCceEEEc
Confidence 9999998764211 11 0 000 000 0 0 0000012345
Q ss_pred CCCCceeeeccC-CcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEE
Q 016769 167 AEGPKYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245 (383)
Q Consensus 167 ~~~~~~~~~~g~-~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~w 245 (383)
++|+. +.++.. .++.|.++|+.+.+.+.++.-. + |..+. |. +...+++.+.||++.+.
T Consensus 146 pDGk~-lyVan~~~~~~VsVID~~t~~vv~tI~v~-----------g---~~~~~---P~---g~~~~~~~~~DG~~~~v 204 (386)
T 3sjl_D 146 PDGKT-LLFYQFSPAPAVGVVDLEGKAFKRMLDVP-----------D---CYHIF---PT---APDTFFMHCRDGSLAKV 204 (386)
T ss_dssp TTSSE-EEEEECSSSCEEEEEETTTTEEEEEEECC-----------S---EEEEE---EE---ETTEEEEEETTSCEEEE
T ss_pred CCCCE-EEEEEcCCCCeEEEEECCCCcEEEEEECC-----------C---cceee---cC---CCceeEEECCCCCEEEE
Confidence 66654 444433 3578999999999987777421 1 11111 11 11235577789999999
Q ss_pred eCCCCCCceeeeeccc----cCeE-EEEEe-CCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee----------cCCCC
Q 016769 246 DIRNPGIPLTAMKVHL----EPVL-CLSID-ESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN----------LERPG 309 (383)
Q Consensus 246 dl~~~~~~~~~~~~h~----~~v~-~~~~~-~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~----------~~~~~ 309 (383)
++...+........+. .++. ...|+ +++ .++-.+.++++.+.|+....... ..... ....+
T Consensus 205 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~vs~~g~V~v~d~~~~~~~v--~~~~~~~~~~~~~~g~~p~g 281 (386)
T 3sjl_D 205 AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLVWPTYTGKIHQIDLSSGDAKF--LPAVEALTEAERADGWRPGG 281 (386)
T ss_dssp ECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEEEEBTTSEEEEEECTTSSCEE--CCCEESSCHHHHHTTEEECS
T ss_pred ECCCCCeEEEeecceeccccccccccceeEcCCC-cEEEEeCCCEEEEEECCCCccee--ecceeccccccccccccCCC
Confidence 9876333222111111 2221 13444 344 34445668899999986543221 11111 01123
Q ss_pred eEEEEECCCCcEEEEEeC----------CCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEE-eCCCcEEEEe
Q 016769 310 ISGTSIRPDSKIAATAGW----------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASA-SEDSTVALWE 377 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~-s~d~~i~~w~ 377 (383)
...++++|+++.+...-. .++|.++|+.+++.+..+.- ...++.++|+||++ +|.++ ..++.|.++|
T Consensus 282 ~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 282 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEE
T ss_pred cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 345788898876665532 25799999999999887753 23688999999997 55554 5589999999
Q ss_pred CCC
Q 016769 378 LYP 380 (383)
Q Consensus 378 ~~~ 380 (383)
...
T Consensus 361 ~~t 363 (386)
T 3sjl_D 361 AES 363 (386)
T ss_dssp TTT
T ss_pred CCC
Confidence 853
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-09 Score=107.07 Aligned_cols=295 Identities=11% Similarity=0.022 Sum_probs=151.8
Q ss_pred eeeeeecCCcee---------eEEEe--CCCCe-EEEecC-CCeEEEeeCc--c-ccccccccccc---ccceeeeeeec
Q 016769 11 VAVLRGHRASVT---------DVCFH--QTKPI-LFAGTT-GGELRIWDTV--Q-HRTVSSSWVHS---AAHGIVSVATG 71 (383)
Q Consensus 11 ~~~l~gH~~~V~---------~v~f~--~~~~~-L~sgs~-D~~v~vW~~~--~-~~~~~~~~~~~---~~~~~~~~~~~ 71 (383)
...|.+|...|. ..+++ |||++ |+.++. +..|.+|+.. + +. ...+.... ....+..++++
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~s 138 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLL 138 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEE
T ss_pred cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEEC
Confidence 456667777766 66665 99988 665543 5566666664 2 22 22222211 12345678888
Q ss_pred CCCCcceeEecccC----------CeEEEeecCC------CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCcc
Q 016769 72 PSIGLNKVISQGRD----------GTVKCWDIEN------GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC 135 (383)
Q Consensus 72 ~~~~~~~l~s~~~D----------~ti~~Wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (383)
| +++.|+.++.| .+|.+||+++ +... .+.. ...
T Consensus 139 p--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~l~~-----------~~~------------- 187 (662)
T 3azo_A 139 P--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-----ELSD-----------DAH------------- 187 (662)
T ss_dssp T--TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-----ESSC-----------SCS-------------
T ss_pred C--CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-----EEEe-----------cCC-------------
Confidence 8 46788877766 5899999876 3210 0000 000
Q ss_pred ceeccCcccccCccccccccCCccceecccCCCCCceeeeccCC------cceEEEEecC-CCC--eeeEeccCcCCCCC
Q 016769 136 YEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQ------LSEVEIWDLN-TAE--RCTRLHQNSCGGSP 206 (383)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~i~~Wdl~-~~~--~~~~~~~~~~~~s~ 206 (383)
.......++++|+.++.++... ...|++||++ ++. ....+....
T Consensus 188 ----------------------~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~----- 240 (662)
T 3azo_A 188 ----------------------RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP----- 240 (662)
T ss_dssp ----------------------SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET-----
T ss_pred ----------------------CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC-----
Confidence 0000112446665433333221 2479999998 562 222332110
Q ss_pred CcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC--cEEEEeCCCCCCceeeeeccccC--------eEEEEEeCCCCce
Q 016769 207 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEP--------VLCLSIDESCNGG 276 (383)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg--~i~~wdl~~~~~~~~~~~~h~~~--------v~~~~~~~~~~~~ 276 (383)
... ... ..+.|+ +. .++++..++ .|.+||+.++ ........+... +..+.+.+++..+
T Consensus 241 ----~~~--~~~-~~~spd---g~-l~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~ 308 (662)
T 3azo_A 241 ----EEA--IAQ-AEWAPD---GS-LIVATDRTGWWNLHRVDPATG-AATQLCRREEEFAGPLWTPGMRWFAPLANGLIA 308 (662)
T ss_dssp ----TBC--EEE-EEECTT---SC-EEEEECTTSSCEEEEECTTTC-CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEE
T ss_pred ----Cce--Ecc-eEECCC---Ce-EEEEECCCCCeEEEEEECCCC-ceeecccccccccCccccccCceEeEeCCCEEE
Confidence 000 011 124443 22 456677778 5666665443 222222222222 4567888877777
Q ss_pred EEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEE-EECCCCcEEEEEeCCCcEEEE--EcCCCceEEEeccccccee
Q 016769 277 ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGT-SIRPDSKIAATAGWDRRVRIY--NYRKGSALAILKYHHATCN 353 (383)
Q Consensus 277 ~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~-~~~p~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~h~~~v~ 353 (383)
++++. +.++||.++..++.. ..+..+...+..+ +++++.-++++++.+....+| |+.+++.......|...+.
T Consensus 309 ~~~~~-~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~ 384 (662)
T 3azo_A 309 VVHGK-GAAVLGILDPESGEL---VDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVD 384 (662)
T ss_dssp EEEBS-SSCEEEEEETTTTEE---EECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSC
T ss_pred EEEEc-CccEEEEEECCCCcE---EEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCC
Confidence 88887 999999665443332 2233344456666 555444455666666554554 6666665443344543333
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 354 AVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 354 ~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
...+++.....+.+..+..|..|-+.|
T Consensus 385 ~~~~~~~~~~~~~~~dg~~i~~~~~~P 411 (662)
T 3azo_A 385 PAYYPEPQIRTFTAPDGREIHAHIYPP 411 (662)
T ss_dssp GGGSCCCEEEEEECTTSCEEEEEEECC
T ss_pred ccccCcceEEEEEcCCCCEEEEEEECC
Confidence 333443333444444444666665543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.14 E-value=9.4e-08 Score=85.03 Aligned_cols=117 Identities=11% Similarity=0.133 Sum_probs=83.8
Q ss_pred cCeEEEEEe----CCCCceEEE-EcCCcEEEEEccCCCCeeEE---eeeeecCC-CCeEEEEECCCCcEEEEEeCCCcEE
Q 016769 262 EPVLCLSID----ESCNGGISG-GADQKIVLYNLDHSTGSCVI---KKEINLER-PGISGTSIRPDSKIAATAGWDRRVR 332 (383)
Q Consensus 262 ~~v~~~~~~----~~~~~~~s~-~~d~~i~~wdl~~~~~~~~~---~~~~~~~~-~~i~~~~~~p~~~~l~s~~~dg~i~ 332 (383)
.....+.++ +++..++.+ ..++.|.+||++. ++.... ........ .....++++++|++.++...++.|.
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~-~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG-PAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE-TTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC-CCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence 345677788 877655554 4578899999862 122111 11111111 4578899999999888887899999
Q ss_pred EEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 333 IYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 333 iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
+||..+++.+..+..+...+.+++|+||++ ++++...++.|..|++.
T Consensus 251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 999987777666666667899999999999 55666677899999875
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-08 Score=94.28 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=112.6
Q ss_pred cCCCCCceeeeccCCcc--eEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcE
Q 016769 165 VPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 242 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~--~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i 242 (383)
++++|+.++. +...++ .|.+||+.+++.......... ..... .+.|+. ..++.++.++.|
T Consensus 43 ~SpDg~~l~~-~~~~~g~~~l~~~d~~~g~~~~lt~~~~~----------~~~~~---~~spdg----~~l~~~~~~~~l 104 (388)
T 3pe7_A 43 FTRDGSKLLF-GGAFDGPWNYYLLDLNTQVATQLTEGRGD----------NTFGG---FLSPDD----DALFYVKDGRNL 104 (388)
T ss_dssp BCTTSCEEEE-EECTTSSCEEEEEETTTCEEEECCCSSCB----------CSSSC---EECTTS----SEEEEEETTTEE
T ss_pred CCCCCCEEEE-EEcCCCCceEEEEeCCCCceEEeeeCCCC----------Cccce---EEcCCC----CEEEEEeCCCeE
Confidence 5567764444 434344 588889888775433221110 00000 244432 257777888999
Q ss_pred EEEeCCCCCCceeeeeccccCeEEE--EEeCCCCceEEE----------------------EcCCcEEEEEccCCCCeeE
Q 016769 243 LVWDIRNPGIPLTAMKVHLEPVLCL--SIDESCNGGISG----------------------GADQKIVLYNLDHSTGSCV 298 (383)
Q Consensus 243 ~~wdl~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~~s~----------------------~~d~~i~~wdl~~~~~~~~ 298 (383)
.+||+.+.. .......+...+... .+++++..++.. +.+..|.+||+.......
T Consensus 105 ~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~- 182 (388)
T 3pe7_A 105 MRVDLATLE-ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV- 182 (388)
T ss_dssp EEEETTTCC-EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-
T ss_pred EEEECCCCc-ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-
Confidence 999998743 233344444333333 336776655422 234668888887543211
Q ss_pred EeeeeecCCCCeEEEEECC-CCcEEEEEeCC------CcEEEEEcCCCceEEEecccc--cceeEEEEeCCCCEEEEEeC
Q 016769 299 IKKEINLERPGISGTSIRP-DSKIAATAGWD------RRVRIYNYRKGSALAILKYHH--ATCNAVSFSSDCKLMASASE 369 (383)
Q Consensus 299 ~~~~~~~~~~~i~~~~~~p-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~h~--~~v~~v~~spd~~~las~s~ 369 (383)
+......+..++|+| |++.|+....+ ..|.++|+..++.. .+..+. ..+...+|||||+.|+..+.
T Consensus 183 ----l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 183 ----ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp ----EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred ----eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEec
Confidence 112334578999999 99988877753 37888887655443 343344 35788899999997766544
Q ss_pred C-C----cEEEEeCC
Q 016769 370 D-S----TVALWELY 379 (383)
Q Consensus 370 d-~----~i~~w~~~ 379 (383)
+ + .|.+||+.
T Consensus 258 ~~~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 258 LKGSPDRFIYSADPE 272 (388)
T ss_dssp ETTCCCEEEEEECTT
T ss_pred CCCCCcceEEEEecC
Confidence 2 2 39999985
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.7e-09 Score=94.17 Aligned_cols=180 Identities=14% Similarity=0.136 Sum_probs=116.1
Q ss_pred ceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeee---
Q 016769 181 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM--- 257 (383)
Q Consensus 181 ~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~--- 257 (383)
+.|.+||..+++.+....... +. ...+ ++ +.+ .+. .+++...++.|++||.......+..+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~------~~-~p~g--ia---~d~---~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~ 132 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNL------FY-LPHG--LS---IDT---DGN-YWVTDVALHQVFKLDPHSKEGPLLILGRS 132 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTT------CS-SEEE--EE---ECT---TSC-EEEEETTTTEEEEECTTCSSCCSEEESBT
T ss_pred CcEEEEECCCCeEEeccCCCc------cC-CceE--EE---ECC---CCC-EEEEECCCCEEEEEeCCCCeEEEEEeccc
Confidence 479999998888654443110 00 0011 11 222 222 46677888999999976432133333
Q ss_pred ------eccccCeEEEEEeC-CCCceEEEE-cCCcEEEEEccCCCCeeEEeeeeec--------CCCCeEEEEECCC-Cc
Q 016769 258 ------KVHLEPVLCLSIDE-SCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINL--------ERPGISGTSIRPD-SK 320 (383)
Q Consensus 258 ------~~h~~~v~~~~~~~-~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~~~~--------~~~~i~~~~~~p~-~~ 320 (383)
..+......+++++ .+..+++.+ .++.|++||.+ +.......... ......+++++|+ ++
T Consensus 133 ~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~---g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~ 209 (329)
T 3fvz_A 133 MQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS---GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ 209 (329)
T ss_dssp TBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT---SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTE
T ss_pred CCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC---CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCE
Confidence 23445678999999 666556665 58999999843 22222111111 1123789999998 78
Q ss_pred EEEEEeCCCcEEEEEcCCCceEEEec--ccccceeEEEEeC------CCCEEEEEeCCCcEEEEeCC
Q 016769 321 IAATAGWDRRVRIYNYRKGSALAILK--YHHATCNAVSFSS------DCKLMASASEDSTVALWELY 379 (383)
Q Consensus 321 ~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~sp------d~~~las~s~d~~i~~w~~~ 379 (383)
++++...+++|++||..+++.+..+. .+...+.+++|+| +|+.+++.+.+..|++||+.
T Consensus 210 l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~ 276 (329)
T 3fvz_A 210 LCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS 276 (329)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETT
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcC
Confidence 88888889999999999898888774 4566788999999 44444444555689999864
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.3e-07 Score=82.71 Aligned_cols=281 Identities=9% Similarity=-0.019 Sum_probs=157.0
Q ss_pred EEeCCCCeEEEecC--CC---eEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecc----------cCCeEE
Q 016769 25 CFHQTKPILFAGTT--GG---ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVK 89 (383)
Q Consensus 25 ~f~~~~~~L~sgs~--D~---~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~D~ti~ 89 (383)
...|++++++.... .. +|.++|..+++.+..+.... .- .+.++| +++.++.+. .+++|.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~---~p-~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~ 100 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF---LP-NPVAAH--SGSEFALASTSFSRIAKGKRTDYVE 100 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC---CC-CeEECC--CCCEEEEEeccccccccCCCCCeEE
Confidence 44578887777654 22 88999998877654433211 12 667777 456665443 478899
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
++|..+.+... .+... ..... . .+ . ......++++|
T Consensus 101 viD~~t~~~~~----~i~~~----------~~~~~---~-----------~g------------~----~p~~~~~spDG 136 (373)
T 2mad_H 101 VFDPVTFLPIA----DIELP----------DAPRF---D-----------VG------------P----YSWMNANTPNN 136 (373)
T ss_pred EEECCCCcEEE----EEECC----------Ccccc---c-----------cC------------C----CccceEECCCC
Confidence 99987653211 11000 00000 0 00 0 00011244666
Q ss_pred CceeeeccC-CcceEEEEecCCCCeeeE-eccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 170 PKYMAVAGE-QLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 170 ~~~~~~~g~-~~~~i~~Wdl~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
+ ++.++.. ..+.|.++| ++++.+.. +.-. -|.. +.+.. ...+++.+.||++.++|.
T Consensus 137 ~-~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~--------------~~~~---~~~~~---~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 137 A-DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP--------------TCYH---IHPGA---PSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred C-EEEEEecCCCCeEEEEE-CCCCEEeEEcCCC--------------ceEE---EEeCC---CceEEEEcCCCCEEEEEC
Confidence 5 4444443 257899999 99887665 4311 0111 11221 113456677999999998
Q ss_pred CCCCCceeeee-----ccccCe-EEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee--------cCCCCeEEE
Q 016769 248 RNPGIPLTAMK-----VHLEPV-LCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN--------LERPGISGT 313 (383)
Q Consensus 248 ~~~~~~~~~~~-----~h~~~v-~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~--------~~~~~i~~~ 313 (383)
+... ..... ....++ ....+.+.+..++..+..+.+.+.|+.............. ....+...+
T Consensus 195 -~g~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~ 272 (373)
T 2mad_H 195 -AGGA-AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV 272 (373)
T ss_pred -CCcE-EEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence 5432 21111 111222 1223344444444444677888888764322111110000 011223447
Q ss_pred EECCCCcEEEEEeC----------CCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEe-CCCcEEEEeCCC
Q 016769 314 SIRPDSKIAATAGW----------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASAS-EDSTVALWELYP 380 (383)
Q Consensus 314 ~~~p~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s-~d~~i~~w~~~~ 380 (383)
.++|+++.+..+.. ++.|.++|+.+++.+.++. -......++|+|||+ .+.++. .++.|.+||+..
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 89999887666543 3589999999999888875 333578999999999 777777 589999999853
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-08 Score=88.29 Aligned_cols=134 Identities=10% Similarity=0.172 Sum_probs=96.9
Q ss_pred CCcEEEEeCCCCCCceeeee-ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC
Q 016769 239 DGSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 317 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p 317 (383)
++.|.+||. + +..+..+. .+...+..+.+++++..+++...++.|.+||.+. ..............+.+++++|
T Consensus 99 ~~~i~~~d~-~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g---~~~~~~~~~~~~~~p~~i~~~~ 173 (286)
T 1q7f_A 99 THQIQIYNQ-Y-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG---NVLHKFGCSKHLEFPNGVVVND 173 (286)
T ss_dssp GCEEEEECT-T-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS---CEEEEEECTTTCSSEEEEEECS
T ss_pred CCEEEEECC-C-CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC---CEEEEeCCCCccCCcEEEEECC
Confidence 889999994 3 23333332 2345678999999887656666788999998642 2221111112234688999999
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCceEEEeccc--ccceeEEEEeCCCCEEEEEeCCC-cEEEEeC
Q 016769 318 DSKIAATAGWDRRVRIYNYRKGSALAILKYH--HATCNAVSFSSDCKLMASASEDS-TVALWEL 378 (383)
Q Consensus 318 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~v~~spd~~~las~s~d~-~i~~w~~ 378 (383)
+++++++...++.|++||. .++.+..+..+ ...+..++++|+|+++++...++ .|++||.
T Consensus 174 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 174 KQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp SSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred CCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 9998888888999999998 45666666433 36789999999999999988886 9999985
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3e-07 Score=88.92 Aligned_cols=295 Identities=13% Similarity=0.066 Sum_probs=161.1
Q ss_pred ceeeEEEeCCCCeEEEecCCCeEEEeeCc--ccccccccccccccceeeeeeec----CCCCcceeEe-cccCCeEEEee
Q 016769 20 SVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATG----PSIGLNKVIS-QGRDGTVKCWD 92 (383)
Q Consensus 20 ~V~~v~f~~~~~~L~sgs~D~~v~vW~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~s-~~~D~ti~~Wd 92 (383)
.+..+.|+|||++|++++.|+.|.+||+. +.+.+..+... ..-..++++ | ++++++. ...++++.++|
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G---~~P~~ia~s~~~~p--DGk~l~v~n~~~~~v~ViD 272 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG---SEARSIETSKMEGW--EDKYAIAGAYWPPQYVIMD 272 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC---SEEEEEEECCSTTC--TTTEEEEEEEETTEEEEEE
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC---CCCceeEEccccCC--CCCEEEEEEccCCeEEEEE
Confidence 45578999999999999999999999985 55544443322 223466777 4 3566654 55779999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
..+.+. ...+..... ..........+ +...+ ..++.++.+
T Consensus 273 ~~t~~~----~~~i~~~~~----------~~~~~~~~p~~------------------------rva~i--~~s~~~~~~ 312 (567)
T 1qks_A 273 GETLEP----KKIQSTRGM----------TYDEQEYHPEP------------------------RVAAI--LASHYRPEF 312 (567)
T ss_dssp TTTCCE----EEEEECCEE----------CTTTCCEESCC------------------------CEEEE--EECSSSSEE
T ss_pred CCCCcE----EEEEecccc----------ccccccccCCC------------------------ceEEE--EEcCCCCEE
Confidence 876532 111111000 00000000000 00000 011223333
Q ss_pred eeeccCCcceEEEEecCCCCee--eEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 250 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~ 250 (383)
++. -...+.|.++|..+.+.+ ..+... .+ .... .|.++ +...++++..+++|.++|+.+.
T Consensus 313 vv~-~~~~g~v~~vd~~~~~~~~v~~i~~~------~~-----~~d~---~~~pd---gr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 313 IVN-VKETGKILLVDYTDLNNLKTTEISAE------RF-----LHDG---GLDGS---HRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEE-ETTTTEEEEEETTCSSEEEEEEEECC------SS-----EEEE---EECTT---SCEEEEEEGGGTEEEEEETTTT
T ss_pred EEE-ecCCCeEEEEecCCCccceeeeeecc------cc-----ccCc---eECCC---CCEEEEEeCCCCeEEEEECCCC
Confidence 333 345678999998765422 222110 00 0001 13332 2334555667889999999874
Q ss_pred CCceeeeec-----cccCeEEEEEeCCCCce-EEEE-cCCcEEEEEccCCCCe---eEEeeeeecCCCCeEEEEECCCCc
Q 016769 251 GIPLTAMKV-----HLEPVLCLSIDESCNGG-ISGG-ADQKIVLYNLDHSTGS---CVIKKEINLERPGISGTSIRPDSK 320 (383)
Q Consensus 251 ~~~~~~~~~-----h~~~v~~~~~~~~~~~~-~s~~-~d~~i~~wdl~~~~~~---~~~~~~~~~~~~~i~~~~~~p~~~ 320 (383)
. ....+.. |-.....+ +++++..+ +++. .++.|.++|.+..... ......+.....+-.-+.++|+++
T Consensus 375 k-l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~ 452 (567)
T 1qks_A 375 K-LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQ 452 (567)
T ss_dssp E-EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCS
T ss_pred c-EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCC
Confidence 3 3333332 22112222 47764444 3443 4689999998752210 111223333223334467899999
Q ss_pred EEEEEeC-------CCcEEEEEcCCC-----c-eEEEec--------ccccceeEEEEeCCCCEEEEEe-----CCCcEE
Q 016769 321 IAATAGW-------DRRVRIYNYRKG-----S-ALAILK--------YHHATCNAVSFSSDCKLMASAS-----EDSTVA 374 (383)
Q Consensus 321 ~l~s~~~-------dg~i~iwd~~~~-----~-~~~~~~--------~h~~~v~~v~~spd~~~las~s-----~d~~i~ 374 (383)
++..... ..+|.+||+.+. . .+..+. .-...+..+.|+|||+.+-.+. .++.|.
T Consensus 453 ~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~ 532 (567)
T 1qks_A 453 YLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALV 532 (567)
T ss_dssp EEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEE
T ss_pred eEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEE
Confidence 9887663 359999999866 2 123331 1134688899999999654442 378999
Q ss_pred EEeCC
Q 016769 375 LWELY 379 (383)
Q Consensus 375 ~w~~~ 379 (383)
++|..
T Consensus 533 v~D~~ 537 (567)
T 1qks_A 533 VVDDK 537 (567)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 98863
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-08 Score=90.39 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=70.6
Q ss_pred cCeEEEEEeCCCCceEEEEc----CCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEE-EEEeCCCcEEEEEc
Q 016769 262 EPVLCLSIDESCNGGISGGA----DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA-ATAGWDRRVRIYNY 336 (383)
Q Consensus 262 ~~v~~~~~~~~~~~~~s~~~----d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l-~s~~~dg~i~iwd~ 336 (383)
..+..+.+++++...++... +....||.++..+....... .....+.+++|+|+++++ ++.+.++.|++||+
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~ 211 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII---QNISVANGIALSTDEKVLWVTETTANRLHRIAL 211 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee---cCCCcccceEECCCCCEEEEEeCCCCeEEEEEe
Confidence 35667777777754444332 12344554443332221111 112347889999999855 44556889999999
Q ss_pred CC-CceEEE--------ecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 337 RK-GSALAI--------LKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 337 ~~-~~~~~~--------~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
.+ +..+.. +.++ ..+..++++++|+++++...++.|.+||.
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred cCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 64 333221 1222 36788999999999888888899999986
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.8e-08 Score=87.06 Aligned_cols=258 Identities=8% Similarity=-0.052 Sum_probs=145.1
Q ss_pred ceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCC
Q 016769 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (383)
Q Consensus 20 ~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~ 99 (383)
....|++. ++++.++...++.|.+||..+++.+..+... .....+++++ ++..+++...+++|.+||.+++...
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~---~~p~~i~~~~--~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF---TSPRYIHFLS--DEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC---SSEEEEEEEE--TTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC---CCCcEEEEeC--CCeEEEEECCCCeEEEEECCCCeEE
Confidence 45677775 3456666677899999999887766554221 2234555554 3444555558899999999876311
Q ss_pred CCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccC-
Q 016769 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGE- 178 (383)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 178 (383)
. .+.. ..... ....+ ..+ .+ ++.+ +.++..
T Consensus 119 ~----~i~~-----------g~~~~---~~~~p--------------------------~~i--~~--~~~~-lyv~~~~ 149 (328)
T 3dsm_A 119 G----YIEC-----------PDMDM---ESGST--------------------------EQM--VQ--YGKY-VYVNCWS 149 (328)
T ss_dssp E----EEEC-----------TTCCT---TTCBC--------------------------CCE--EE--ETTE-EEEEECT
T ss_pred E----EEEc-----------CCccc---cCCCc--------------------------ceE--EE--ECCE-EEEEcCC
Confidence 0 0000 00000 00000 000 01 1223 333333
Q ss_pred CcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCC----------CcEEEEeCC
Q 016769 179 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----------GSILVWDIR 248 (383)
Q Consensus 179 ~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~d----------g~i~~wdl~ 248 (383)
.++.|.++|+++++.+.++.....+. .+. +.+ .+. ..+++..+ +.|.++|.+
T Consensus 150 ~~~~v~viD~~t~~~~~~i~~g~~p~---------~i~-----~~~---dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 150 YQNRILKIDTETDKVVDELTIGIQPT---------SLV-----MDK---YNK-MWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp TCCEEEEEETTTTEEEEEEECSSCBC---------CCE-----ECT---TSE-EEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEEcCCCcc---------ceE-----EcC---CCC-EEEEECCCccCCccccCCceEEEEECC
Confidence 36799999999988766654321111 111 111 122 23343333 789999987
Q ss_pred CCCCceeeeecc-ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC-CCcEEEEE-
Q 016769 249 NPGIPLTAMKVH-LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATA- 325 (383)
Q Consensus 249 ~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~s~- 325 (383)
+.. ....+... ......+++++++..++.+.. .|.+||.+..... .............+++++| +++.+++.
T Consensus 212 t~~-v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~--~~~~~~~~~~~p~gi~vdp~~g~lyva~~ 286 (328)
T 3dsm_A 212 TFT-VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP--VRPFLEFRDTKYYGLTVNPNNGEVYVADA 286 (328)
T ss_dssp TTE-EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC--SSCSBCCCSSCEEEEEECTTTCCEEEEEC
T ss_pred CCe-EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee--eeeeecCCCCceEEEEEcCCCCeEEEEcc
Confidence 643 23333322 235788999998887776644 8888988654321 0111111134688999999 55666665
Q ss_pred ---eCCCcEEEEEcCCCceEEEecccccceeEEEE
Q 016769 326 ---GWDRRVRIYNYRKGSALAILKYHHATCNAVSF 357 (383)
Q Consensus 326 ---~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 357 (383)
..+++|.+||.. ++.+..+.-- .....++|
T Consensus 287 ~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 287 IDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp TTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred cccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 578999999998 8888777532 23455555
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-08 Score=101.92 Aligned_cols=135 Identities=15% Similarity=0.126 Sum_probs=78.3
Q ss_pred cEEEEeCCCCCCc-eeeeeccccCeEEEEEeCCCCceEEEEc----CCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEE
Q 016769 241 SILVWDIRNPGIP-LTAMKVHLEPVLCLSIDESCNGGISGGA----DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 315 (383)
Q Consensus 241 ~i~~wdl~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~s~~~----d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (383)
.|.+||+.++... ...+..+...+... +++++..++..+. ...|.+||++... .. ...........+.++++
T Consensus 295 ~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~-~~~l~~~~~~~l~~~~~ 371 (741)
T 1yr2_A 295 TVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PR-FDTVVPESKDNLESVGI 371 (741)
T ss_dssp EEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CE-EEEEECCCSSEEEEEEE
T ss_pred eEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cc-cEEEecCCCCeEEEEEE
Confidence 5666666543111 22333333333222 2345555555544 3448888886532 11 11112222234667777
Q ss_pred CCCCcEEEEEeCCCcEEEEEcC-CCceEEEecc-cccceeEEEEeCCCCEEEE----EeCCCcEEEEeCC
Q 016769 316 RPDSKIAATAGWDRRVRIYNYR-KGSALAILKY-HHATCNAVSFSSDCKLMAS----ASEDSTVALWELY 379 (383)
Q Consensus 316 ~p~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~-h~~~v~~v~~spd~~~las----~s~d~~i~~w~~~ 379 (383)
. ++.++++...|+..+||.++ +++....+.. +...+..++++||++.|+. ....+.|++||+.
T Consensus 372 ~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 372 A-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp E-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred E-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 7 66788888999988888665 4565666654 3667888999999986652 2334788999874
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-07 Score=81.18 Aligned_cols=98 Identities=6% Similarity=-0.073 Sum_probs=73.7
Q ss_pred EEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEE
Q 016769 265 LCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI 344 (383)
Q Consensus 265 ~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~ 344 (383)
..+.+.+++..+++...++.|..||.+ +..+.+... . ....++.+.++++++++++.+++|..||..+++.+..
T Consensus 128 ~~v~~~~~G~~lv~~~~~~~v~~~d~~---G~~~w~~~~--~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 128 RQINKNKKGNYLVPLFATSEVREIAPN---GQLLNSVKL--S-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp SCCEECTTSCEEEEETTTTEEEEECTT---SCEEEEEEC--S-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred cCceECCCCCEEEEecCCCEEEEECCC---CCEEEEEEC--C-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 344567778888888889999999875 333333222 1 3456678889999999988888999999999999988
Q ss_pred ecccc------cceeEEEEeCCCCEEEEEe
Q 016769 345 LKYHH------ATCNAVSFSSDCKLMASAS 368 (383)
Q Consensus 345 ~~~h~------~~v~~v~~spd~~~las~s 368 (383)
+..+. ..+..++..++|.++++..
T Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 202 VNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred ecCCCCCCccccccccceEcCCCCEEEEec
Confidence 86432 2378888899999888874
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.7e-07 Score=82.69 Aligned_cols=110 Identities=7% Similarity=-0.014 Sum_probs=77.5
Q ss_pred EEEEeCCCCce-EEEEcCCcEEEEEccCCCCeeEEeeee-e----------cCCCCeEEEEECCCCcEEEEEe-CCCcEE
Q 016769 266 CLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEI-N----------LERPGISGTSIRPDSKIAATAG-WDRRVR 332 (383)
Q Consensus 266 ~~~~~~~~~~~-~s~~~d~~i~~wdl~~~~~~~~~~~~~-~----------~~~~~i~~~~~~p~~~~l~s~~-~dg~i~ 332 (383)
.++++++...+ ++-...+.|..|+.+.. ...+.... . ..-....+++++|+++++++-+ .+++|+
T Consensus 271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~ 348 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLR 348 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEE
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEE
Confidence 88999864444 44455778999987532 11110000 0 0013478999999999888877 899999
Q ss_pred EEEcCCCceEEEeccc---------------ccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 333 IYNYRKGSALAILKYH---------------HATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 333 iwd~~~~~~~~~~~~h---------------~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
.||+.+++. .++.++ -.....++++|+|.++++-..++.|+.+++
T Consensus 349 ~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 349 KLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 999877764 444444 246889999999999999999999988875
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.9e-08 Score=85.75 Aligned_cols=182 Identities=13% Similarity=0.050 Sum_probs=122.4
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
++++++.++.|.+||.++++.+.++..+.. ...... .+.|+ +. ++. +.++.|..||. ++ .
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~---------~~~~~~---~~~pd---G~--ilv-s~~~~V~~~d~-~G-~ 66 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWEYPLEKG---------WECNSV---AATKA---GE--ILF-SYSKGAKMITR-DG-R 66 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEEEECCTT---------CCCCEE---EECTT---SC--EEE-ECBSEEEEECT-TS-C
T ss_pred EEEeeCCCCEEEEEECCCCeEEEEeCCCcc---------CCCcCe---EECCC---CC--EEE-eCCCCEEEECC-CC-C
Confidence 456677789999999999998877753210 001111 13332 22 333 45788999997 43 3
Q ss_pred ceeeeecc-ccCeEEEEEeCCCCceEEEEc-CCcEEEEEccCCCCeeEEeeeeecC----CCCeEEEEECCCCcEEEEEe
Q 016769 253 PLTAMKVH-LEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLE----RPGISGTSIRPDSKIAATAG 326 (383)
Q Consensus 253 ~~~~~~~h-~~~v~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~~~~~~~~----~~~i~~~~~~p~~~~l~s~~ 326 (383)
.+-.++.+ ...+.++.+.+++..+++.+. ++++..+|. ++..+........ ......+++.++|+++++..
T Consensus 67 ~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~---~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~ 143 (276)
T 3no2_A 67 ELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM---KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF 143 (276)
T ss_dssp EEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT---TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET
T ss_pred EEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC---CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec
Confidence 34444443 235677888899988887776 565655553 3443333222111 11244567889999999999
Q ss_pred CCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 327 WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.+++|..||.. ++.+..+... ..+.++.+.|+|+++++++.++.|..+|..
T Consensus 144 ~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 144 ATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp TTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred CCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 99999999998 9999888754 356678889999999999999888888764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.1e-07 Score=78.13 Aligned_cols=281 Identities=8% Similarity=0.004 Sum_probs=154.9
Q ss_pred ecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCC
Q 016769 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~ 95 (383)
.....+.+|++.++|++.++...++.|.+||.. ++.. .............+++.+ ++..+++...++.|..+|..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSS--LGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEEECC--CCCEEEEecCCCeEEEECCC-
Confidence 445688999999999988888788999999976 3322 111111112345566665 35666666667889999876
Q ss_pred CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeee
Q 016769 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAV 175 (383)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (383)
+... .. .. +.. .... .. ..+.+++. ++ +
T Consensus 92 g~~~-----~~----------~~---~~~-------~~~~-----------------------~~--i~~~~~g~-l~-v 119 (300)
T 2qc5_A 92 GGFT-----EY----------PL---PQP-------DSGP-----------------------YG--ITEGLNGD-IW-F 119 (300)
T ss_dssp SCEE-----EE----------EC---SST-------TCCE-----------------------EE--EEECSTTC-EE-E
T ss_pred CCeE-----Ee----------cC---CCC-------CCCC-----------------------cc--ceECCCCC-EE-E
Confidence 4210 00 00 000 0000 00 01122333 22 3
Q ss_pred ccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCcee
Q 016769 176 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 255 (383)
Q Consensus 176 ~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~ 255 (383)
+....+.|..+|.. ++.. .+.... .......+. +.+ .+. ..++...++.|..+|. +......
T Consensus 120 ~~~~~~~i~~~~~~-g~~~-~~~~~~--------~~~~~~~i~---~d~---~g~-l~v~~~~~~~i~~~~~-~g~~~~~ 181 (300)
T 2qc5_A 120 TQLNGDRIGKLTAD-GTIY-EYDLPN--------KGSYPAFIT---LGS---DNA-LWFTENQNNSIGRITN-TGKLEEY 181 (300)
T ss_dssp EETTTTEEEEECTT-SCEE-EEECSS--------TTCCEEEEE---ECT---TSS-EEEEETTTTEEEEECT-TCCEEEE
T ss_pred EccCCCeEEEECCC-CCEE-EccCCC--------CCCCceeEE---ECC---CCC-EEEEecCCCeEEEECC-CCcEEEe
Confidence 33334678888876 4432 221100 000111111 111 222 3444555788999987 3222111
Q ss_pred eeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEE
Q 016769 256 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 335 (383)
Q Consensus 256 ~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd 335 (383)
....+...+..+.+++++...++....+.|.+||.+ +.... .........+.++++.++++..++...++.|..||
T Consensus 182 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~---g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 182 PLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT---GEISE-YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT---CCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred eCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC---CcEEE-EECCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 122234467889999887544444446679999872 22211 11222335688999999999777766779999999
Q ss_pred cCCCceE-EEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 336 YRKGSAL-AILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 336 ~~~~~~~-~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
. +++.. ..+......+.++++.|+|++.++.. + .|..+|.
T Consensus 258 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 258 N-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp T-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred C-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 8 45433 22333455688999999999777665 4 5555553
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-08 Score=93.23 Aligned_cols=192 Identities=10% Similarity=0.020 Sum_probs=107.8
Q ss_pred cCCCCCceeeeccC-CcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 165 VPAEGPKYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 165 ~~~~~~~~~~~~g~-~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
++++|+.++.+... .+..|.+||+.+++.. .+...... .... ..+.|+. ..++..+.++.|.
T Consensus 43 ~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~-~l~~~~~~---------~~~~---~~~spdg----~~l~~~~~~~~l~ 105 (396)
T 3c5m_A 43 FTQDGKKLLFAGDFDGNRNYYLLNLETQQAV-QLTEGKGD---------NTFG---GFISTDE----RAFFYVKNELNLM 105 (396)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETTTTEEE-ECCCSSCB---------CTTT---CEECTTS----SEEEEEETTTEEE
T ss_pred CCCCCCEEEEEEecCCCceEEEEECCCCcEE-EeecCCCC---------cccc---ceECCCC----CEEEEEEcCCcEE
Confidence 45666644433322 2346888899887642 22211000 0000 0133332 2466777788999
Q ss_pred EEeCCCCCCceeeeeccccCeEE-------------------EEEeCCCCceEEE-----EcCCcEEEEEccCCCCeeEE
Q 016769 244 VWDIRNPGIPLTAMKVHLEPVLC-------------------LSIDESCNGGISG-----GADQKIVLYNLDHSTGSCVI 299 (383)
Q Consensus 244 ~wdl~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~~~~s~-----~~d~~i~~wdl~~~~~~~~~ 299 (383)
+||+.... .......+...... ..+++++..++.. ..+..|.+||++........
T Consensus 106 ~~d~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~ 184 (396)
T 3c5m_A 106 KVDLETLE-EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH 184 (396)
T ss_dssp EEETTTCC-EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE
T ss_pred EEECCCCC-cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec
Confidence 99987643 22223323221111 1234445443322 34567888998754322111
Q ss_pred eeeeecCCCCeEEEEECC-CCcEEEEEeCC------CcEEEEEcCCCceEEEeccc-ccceeEEEEeCCCCEEEEEeCC-
Q 016769 300 KKEINLERPGISGTSIRP-DSKIAATAGWD------RRVRIYNYRKGSALAILKYH-HATCNAVSFSSDCKLMASASED- 370 (383)
Q Consensus 300 ~~~~~~~~~~i~~~~~~p-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~h-~~~v~~v~~spd~~~las~s~d- 370 (383)
.....+..+.|+| +++.|+..+.+ ..|.+||+..++........ ...+..++|+|||++|+.++.+
T Consensus 185 -----~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 185 -----QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp -----EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred -----cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 2334678899999 78877666543 36888898765543322211 2357889999999988877655
Q ss_pred ----CcEEEEeCC
Q 016769 371 ----STVALWELY 379 (383)
Q Consensus 371 ----~~i~~w~~~ 379 (383)
+.|++||+.
T Consensus 260 ~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 260 GQTDRVIYKANPE 272 (396)
T ss_dssp TTCCEEEEEECTT
T ss_pred CCccceEEEEECC
Confidence 459999985
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-08 Score=88.30 Aligned_cols=143 Identities=10% Similarity=0.041 Sum_probs=99.1
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
.++++..++.|..||.... ...+..+...+..+.+++++..+++...++.|.+||....................++
T Consensus 42 l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 118 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPN 118 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCC
T ss_pred EEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCC
Confidence 3667888999999998764 4555566677899999998876555555688999987544322111111111123467
Q ss_pred EEEECCCCcEEEEEeC-----------------CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEE
Q 016769 312 GTSIRPDSKIAATAGW-----------------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVA 374 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~ 374 (383)
.++++|+|+++++.+. .+.|..++.. ++ +..+..+....+.++|+|||+.|++.+.++.|.
T Consensus 119 ~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~ 196 (296)
T 3e5z_A 119 DVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATH 196 (296)
T ss_dssp CEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEE
T ss_pred CEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEE
Confidence 8999999998887321 2345555544 43 444555667789999999999888888899999
Q ss_pred EEeCC
Q 016769 375 LWELY 379 (383)
Q Consensus 375 ~w~~~ 379 (383)
+|++.
T Consensus 197 ~~~~~ 201 (296)
T 3e5z_A 197 RYCLN 201 (296)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99985
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.90 E-value=4.8e-06 Score=73.64 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=77.7
Q ss_pred cCeEEEEEeCCCCceEE-EEcCCcEEEEEccCCCCeeEEee---eeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcC
Q 016769 262 EPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKK---EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 337 (383)
Q Consensus 262 ~~v~~~~~~~~~~~~~s-~~~d~~i~~wdl~~~~~~~~~~~---~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~ 337 (383)
.....++++++++.++. .+.++.|.+|+++..++...... ..........++++.++|++.++...+++|..||.+
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV 228 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence 34567899999887654 45578899999864343321111 111122457889999999988887778899999999
Q ss_pred CCceEEEecccccceeEEEEe-CCCCEE-EEEeC
Q 016769 338 KGSALAILKYHHATCNAVSFS-SDCKLM-ASASE 369 (383)
Q Consensus 338 ~~~~~~~~~~h~~~v~~v~~s-pd~~~l-as~s~ 369 (383)
+++.+..+..+...+.+++|. ||++.| ++...
T Consensus 229 tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 229 TGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp TCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred CceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 999888887777789999999 888854 44443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-06 Score=80.35 Aligned_cols=278 Identities=13% Similarity=0.094 Sum_probs=159.4
Q ss_pred CCCCeEEEecCC-----CeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecc----------cCCeEEEee
Q 016769 28 QTKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWD 92 (383)
Q Consensus 28 ~~~~~L~sgs~D-----~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~D~ti~~Wd 92 (383)
++++.++..... +.|.+.|..+.+.+..+..... . .+.++| ++++++.+. .+++|.++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~--P--gia~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL--P--HPVAAE--DGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS--C--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC--C--ceEECC--CCCEEEEEeccccccccCCCCCEEEEEE
Confidence 466655554442 6999999988877766543322 1 567777 356555443 478999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
..+.+... .+ . +...... . .+ .......++++++.
T Consensus 156 ~~t~~vv~----~I----------~-v~g~~r~--~-----------~g----------------~~P~~~~~spDGk~- 190 (426)
T 3c75_H 156 PVTFLPIA----DI----------E-LPDAPRF--L-----------VG----------------TYQWMNALTPDNKN- 190 (426)
T ss_dssp TTTCCEEE----EE----------E-ETTCCCC--C-----------BS----------------CCGGGSEECTTSSE-
T ss_pred CCCCcEEE----EE----------E-CCCcccc--c-----------cC----------------CCcceEEEcCCCCE-
Confidence 98764211 11 0 0000000 0 00 00001124456654
Q ss_pred eeeccC-CcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC
Q 016769 173 MAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251 (383)
Q Consensus 173 ~~~~g~-~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~ 251 (383)
+.++.. ..+.|.+.|+.+.+.+.++.-. + |..+ .|.. ...+++.+.||++.+.++.+.
T Consensus 191 lyV~n~~~~~~VsVID~~t~kvv~~I~v~-----------g---~~~~---~p~g---~~~~v~~~~dG~~~~V~~~~~- 249 (426)
T 3c75_H 191 LLFYQFSPAPAVGVVDLEGKTFDRMLDVP-----------D---CYHI---FPAS---PTVFYMNCRDGSLARVDFADG- 249 (426)
T ss_dssp EEEEECSSSCEEEEEETTTTEEEEEEECC-----------S---EEEE---EEEE---TTEEEEEETTSSEEEEECCTT-
T ss_pred EEEEecCCCCeEEEEECCCCeEEEEEEcC-----------C---ceee---ccCC---CcEEEEEcCCCCEEEEECCCC-
Confidence 444433 3578999999999877766421 0 1111 1111 113456667888888888432
Q ss_pred Ccee----eeeccccCe-EEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeec----------CCCCeEEEEEC
Q 016769 252 IPLT----AMKVHLEPV-LCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL----------ERPGISGTSIR 316 (383)
Q Consensus 252 ~~~~----~~~~h~~~v-~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~----------~~~~i~~~~~~ 316 (383)
.... .+.....++ ..+.+.+++..++..+..+.+.+.|+...... ....... ...+...++|+
T Consensus 250 ~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~--v~~~~~~~~~~~i~~g~~p~g~~~va~s 327 (426)
T 3c75_H 250 ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT--FRAPIEALTEAERADDWRPGGWQQTAYH 327 (426)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE--ECCCEESSCTTTGGGTEEECSSSCEEEE
T ss_pred cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE--EeeeeeeccccccccccccCCceeeEEc
Confidence 2221 111111222 12455777776666677888888888543211 1111100 00122237899
Q ss_pred CCCcEEEEEeC----------CCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEe-CCCcEEEEeCCC
Q 016769 317 PDSKIAATAGW----------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASAS-EDSTVALWELYP 380 (383)
Q Consensus 317 p~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s-~d~~i~~w~~~~ 380 (383)
|+++.+..+.. +++|.++|+.+.+.+.++.-- .....++|+|||+ ++.++. .++.|.++|+..
T Consensus 328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 99876555432 357999999999999887532 2588999999999 888887 599999999854
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-07 Score=92.88 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=56.4
Q ss_pred CcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCC---cEEEEEcCCCceEEEec-ccccceeEEEEe
Q 016769 283 QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR---RVRIYNYRKGSALAILK-YHHATCNAVSFS 358 (383)
Q Consensus 283 ~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~-~h~~~v~~v~~s 358 (383)
+.|..+|++........ .+..+...+. .|++++++|+....++ .|++||+..+. ...+. .....+..+.++
T Consensus 305 ~~l~~~d~~~~~~~~~~--~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~ 379 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHWR--DLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGK 379 (693)
T ss_dssp CEEEEEETTSCCGGGCE--EEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCC
T ss_pred CEEEEEeCCCCCccccE--EEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecC
Confidence 46777887654321111 1122223333 7888888877666544 78899987443 33343 344567777888
Q ss_pred CCCCEEEEEeCC----CcEEEEeCC
Q 016769 359 SDCKLMASASED----STVALWELY 379 (383)
Q Consensus 359 pd~~~las~s~d----~~i~~w~~~ 379 (383)
||++.|+....+ +.|..||+.
T Consensus 380 ~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 380 HDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp TTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCCCEEEEEecCCCCCCEEEEEECC
Confidence 998866655544 788888874
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.6e-07 Score=91.02 Aligned_cols=193 Identities=10% Similarity=-0.015 Sum_probs=111.7
Q ss_pred ccCCCCCceeee---ccCCcceEEEEecCCCCee-eEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCC
Q 016769 164 DVPAEGPKYMAV---AGEQLSEVEIWDLNTAERC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 239 (383)
Q Consensus 164 ~~~~~~~~~~~~---~g~~~~~i~~Wdl~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~d 239 (383)
.++++|+.+..+ .|+.+.+|++||+++++.+ ..........++ .+.|++ ..++.++.|
T Consensus 127 ~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~--------------~wspDg----~~l~~~~~d 188 (695)
T 2bkl_A 127 AVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATP--------------KWTPDS----KGFYYEWLP 188 (695)
T ss_dssp EECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCC--------------EECTTS----SEEEEEECC
T ss_pred EECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccce--------------EEecCC----CEEEEEEec
Confidence 355677643322 3455578999999998753 110000000111 244432 235556666
Q ss_pred Cc-------------EEEEeCCCCCC---ceeeeeccccCeEEEEEeCCCCceEEEEcCC--cEEEEEccCCCCeeEEee
Q 016769 240 GS-------------ILVWDIRNPGI---PLTAMKVHLEPVLCLSIDESCNGGISGGADQ--KIVLYNLDHSTGSCVIKK 301 (383)
Q Consensus 240 g~-------------i~~wdl~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~--~i~~wdl~~~~~~~~~~~ 301 (383)
.. |++|++.++.. .+.....|...+..+.++++++.++..+.++ ...+|-++..++...
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~--- 265 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR--- 265 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE---
T ss_pred CCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE---
Confidence 55 99999987532 1222233445678899999999887776655 334443333222211
Q ss_pred eeecCCCCeEEEEECCCCcEEEEEe---CCCcEEEEEcCCCce---EEEeccc-ccceeEEEEeCCCCEEEEEeCCCcEE
Q 016769 302 EINLERPGISGTSIRPDSKIAATAG---WDRRVRIYNYRKGSA---LAILKYH-HATCNAVSFSSDCKLMASASEDSTVA 374 (383)
Q Consensus 302 ~~~~~~~~i~~~~~~p~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~h-~~~v~~v~~spd~~~las~s~d~~i~ 374 (383)
.+..+........+ +++++++.+. .+++|.+||+.+++. ...+..+ ...+..++|+ +++++++...|+..+
T Consensus 266 ~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 266 LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 11122233444445 5666444443 258999999987653 3333333 4467888998 778999999999999
Q ss_pred EEeCC
Q 016769 375 LWELY 379 (383)
Q Consensus 375 ~w~~~ 379 (383)
||.+.
T Consensus 344 l~~~~ 348 (695)
T 2bkl_A 344 VRVAT 348 (695)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.7e-08 Score=88.91 Aligned_cols=129 Identities=6% Similarity=-0.017 Sum_probs=91.1
Q ss_pred EEEEEeCCCcEEEEeCCCCC----------CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEee
Q 016769 232 NVLAGYEDGSILVWDIRNPG----------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK 301 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~ 301 (383)
.+++|+.+ .+++|++.+.. .+.... .+.. |..++| ++..++++ .++.|++||+........
T Consensus 51 ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~--- 121 (388)
T 1xip_A 51 LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRT--- 121 (388)
T ss_dssp EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEE---
T ss_pred EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCc---
Confidence 46677776 56679864211 111222 2344 999999 66777777 889999999876542211
Q ss_pred eeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 302 EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 302 ~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
...+...+.++.+.+. .+++++.||.+.+||+..+.... +...|.|++|||+| ++.|..||.|++|+.
T Consensus 122 -~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~ 189 (388)
T 1xip_A 122 -VTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAW 189 (388)
T ss_dssp -EEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEE
T ss_pred -cceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcC
Confidence 2223345777666543 38888999999999998877643 45689999999999 688999999999965
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.5e-07 Score=91.31 Aligned_cols=191 Identities=7% Similarity=-0.015 Sum_probs=112.7
Q ss_pred ccCCCCCceeeeccCCc----ceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCC
Q 016769 164 DVPAEGPKYMAVAGEQL----SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 239 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~----~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~d 239 (383)
.++++|+. ++.+.+.. ..|++||+++++.+..........++ .+.|++ ..++.++.+
T Consensus 131 ~~SPDg~~-la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~--------------~wspDg----~~l~~~~~~ 191 (710)
T 2xdw_A 131 AFSEDGEY-FAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCM--------------AWTHDG----KGMFYNAYP 191 (710)
T ss_dssp EECTTSSE-EEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCE--------------EECTTS----SEEEEEECC
T ss_pred EECCCCCE-EEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceE--------------EEEeCC----CEEEEEEEC
Confidence 35567654 43332222 38999999998865422211111111 233332 134445555
Q ss_pred Cc----------------EEEEeCCCCCCc-eeeeec--cccCeEEEEEeCCCCceEEEEc-----CCcEEEEEccC---
Q 016769 240 GS----------------ILVWDIRNPGIP-LTAMKV--HLEPVLCLSIDESCNGGISGGA-----DQKIVLYNLDH--- 292 (383)
Q Consensus 240 g~----------------i~~wdl~~~~~~-~~~~~~--h~~~v~~~~~~~~~~~~~s~~~-----d~~i~~wdl~~--- 292 (383)
+. |++|++.++... ...... |...+..+.++++++.++..+. +..|.+||++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred CccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence 44 999999764321 122222 3445678899999998876654 56799999875
Q ss_pred ---CCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC----CcEEEEEcCCCce--EEEeccccc--ceeEEEEeCCC
Q 016769 293 ---STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD----RRVRIYNYRKGSA--LAILKYHHA--TCNAVSFSSDC 361 (383)
Q Consensus 293 ---~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~h~~--~v~~v~~spd~ 361 (383)
...... .+..+...+.. .|+|+|+.|+..+.+ +.|.+||+.++.. ...+..|.. .+..++|++++
T Consensus 272 ~~~~~~~~~---~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 272 GITGILKWV---KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN 347 (710)
T ss_dssp SSCSSCCCE---EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred ccCCccceE---EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence 221111 11122223333 478888877766653 3699999987642 233444543 68889999888
Q ss_pred CEEEEEeCCCcEEEEe
Q 016769 362 KLMASASEDSTVALWE 377 (383)
Q Consensus 362 ~~las~s~d~~i~~w~ 377 (383)
.+++++..|+..+||-
T Consensus 348 ~lv~~~~~~g~~~l~~ 363 (710)
T 2xdw_A 348 FLVLCYLHDVKNTLQL 363 (710)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred EEEEEEEECCEEEEEE
Confidence 8999999999665553
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.8e-07 Score=80.97 Aligned_cols=110 Identities=13% Similarity=0.014 Sum_probs=69.6
Q ss_pred eEEEEEeCCCCceEEEEcCC-cEEEEEccC---CCCe--eEEe-eeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEc
Q 016769 264 VLCLSIDESCNGGISGGADQ-KIVLYNLDH---STGS--CVIK-KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 336 (383)
Q Consensus 264 v~~~~~~~~~~~~~s~~~d~-~i~~wdl~~---~~~~--~~~~-~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~ 336 (383)
+..+++++++..++.+..++ .+..++.+. .... .... ...........+++++++|+++++...+++|.+||.
T Consensus 197 ~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 45688999988887776665 344443221 0000 0000 000011234567999999999999889999999999
Q ss_pred CCCceEEEecc-cccceeEEEEeCCCCEEEEEeCCCcE
Q 016769 337 RKGSALAILKY-HHATCNAVSFSSDCKLMASASEDSTV 373 (383)
Q Consensus 337 ~~~~~~~~~~~-h~~~v~~v~~spd~~~las~s~d~~i 373 (383)
.+++....... +...+.+++|.|+++++++.+..+.+
T Consensus 277 ~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 277 ADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp TTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred CCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 56654332221 24568899999999988888765544
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.79 E-value=9.3e-07 Score=76.71 Aligned_cols=141 Identities=9% Similarity=0.010 Sum_probs=97.4
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeee-ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
+..+..++.|.+||...... ..+. .....+..+.+++++...++...++.|.+|+..... ... ........+.
T Consensus 80 l~v~~~~~~i~~~d~~~~~~--~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~--~~~--~~~~~~~~p~ 153 (270)
T 1rwi_B 80 VYVTDFNNRVVTLAAGSNNQ--TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT--QTV--LPFTGLNDPD 153 (270)
T ss_dssp EEEEETTTEEEEECTTCSCC--EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS--CEE--CCCCSCCSCC
T ss_pred EEEEcCCCEEEEEeCCCceE--eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce--eEe--eccccCCCce
Confidence 33333388999999765322 2222 223567889999988755555667889999654322 111 1111223578
Q ss_pred EEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 312 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+++++|+++++++...++.|.+||............+...+..++++|+|.++++...++.|.+|+..
T Consensus 154 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 154 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred eEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 89999999988877778999999998766544333344678899999999988888889999999874
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.78 E-value=9.1e-06 Score=74.10 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=73.4
Q ss_pred EeCCCcEEEEeCCCCCC-ceeeee--------c--cccCeEEEEEeCCCCceEEEEc----------CCcEEEEEccCCC
Q 016769 236 GYEDGSILVWDIRNPGI-PLTAMK--------V--HLEPVLCLSIDESCNGGISGGA----------DQKIVLYNLDHST 294 (383)
Q Consensus 236 g~~dg~i~~wdl~~~~~-~~~~~~--------~--h~~~v~~~~~~~~~~~~~s~~~----------d~~i~~wdl~~~~ 294 (383)
.+.+|+|.+.|+..... ....+. . .-+....+.+++.+..++.... .++|.+.|+...
T Consensus 243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~- 321 (386)
T 3sjl_D 243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG- 321 (386)
T ss_dssp EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC-
T ss_pred EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC-
Confidence 45589999999875431 111111 0 1123345777888777766432 245667776543
Q ss_pred CeeEEeeeeecCCCCeEEEEECCCCc-EEEEEe-CCCcEEEEEcCCCceEEEecccccceeEEEEeCC
Q 016769 295 GSCVIKKEINLERPGISGTSIRPDSK-IAATAG-WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSD 360 (383)
Q Consensus 295 ~~~~~~~~~~~~~~~i~~~~~~p~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd 360 (383)
+........ ..+.+++|+||++ +|+++. .+++|.++|..+++.+.++..- ...+.+.+++|
T Consensus 322 -kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 322 -ERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp -CEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred -eEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 332222221 2577999999997 666554 5899999999999999887532 22344567776
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.2e-06 Score=74.33 Aligned_cols=126 Identities=9% Similarity=0.030 Sum_probs=79.7
Q ss_pred cEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcC------CcEEEEEccCCCCeeEEeeeeecCCCCeEEEE
Q 016769 241 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD------QKIVLYNLDHSTGSCVIKKEINLERPGISGTS 314 (383)
Q Consensus 241 ~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d------~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~ 314 (383)
.|..||..++.. ..+. .......+++++++..++.+... +.|.+|+++... ................+++
T Consensus 170 ~v~~~d~~~g~~--~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 170 SVYRLPPDGSPL--QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFC 245 (305)
T ss_dssp EEEEECSSSCCC--EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEE
T ss_pred eEEEEcCCCCcE--EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEE
Confidence 455566544322 1122 33455678999999877776665 689999987432 1100111111234456789
Q ss_pred ECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEE
Q 016769 315 IRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVA 374 (383)
Q Consensus 315 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~ 374 (383)
+.++|++.+ ++.++ |.+||. .++.+..+..+. .+..++|+|+++.|..++.++..+
T Consensus 246 ~d~~G~lwv-~~~~g-v~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 246 VDRGGWLWS-SSGTG-VCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp ECTTSCEEE-CCSSE-EEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred ECCCCCEEE-ecCCc-EEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 999999555 44554 999998 577777666544 588999999998887777764333
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.1e-07 Score=85.11 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=91.6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
.|+++ .++.|++||+++.. .....+.|..++..+.+.+. .+++++.||.+.+||+...... . ....++
T Consensus 99 ~L~v~-~~~~l~v~dv~sl~-~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~----~----~~~~Vs 166 (388)
T 1xip_A 99 QVLVS-TRNALYSLDLEELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK----Q----LAQNVT 166 (388)
T ss_dssp EEEEE-ESSEEEEEESSSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE----E----EEESEE
T ss_pred EEEEE-cCCcEEEEEchhhh-ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc----c----ccCCce
Confidence 46666 88999999998744 23445567777877666432 3888999999999999754321 1 124799
Q ss_pred EEEECCCCcEEEEEeCCCcEEEEEcCCCce--EEEe------c---ccccceeEEEEeCCCCEEEE
Q 016769 312 GTSIRPDSKIAATAGWDRRVRIYNYRKGSA--LAIL------K---YHHATCNAVSFSSDCKLMAS 366 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~--~~~~------~---~h~~~v~~v~~spd~~~las 366 (383)
+++|+|.| ++.|..||++++|+.+.++. ..++ . +|...|.+|.|.+++++|++
T Consensus 167 ~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 167 SFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999999 67789999999998877664 4445 2 47788999999999998876
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-07 Score=84.21 Aligned_cols=123 Identities=10% Similarity=0.069 Sum_probs=81.9
Q ss_pred CcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCC-------cEEEEEccCCCCeeEEeeeeecCCCCeEE
Q 016769 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ-------KIVLYNLDHSTGSCVIKKEINLERPGISG 312 (383)
Q Consensus 240 g~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~-------~i~~wdl~~~~~~~~~~~~~~~~~~~i~~ 312 (383)
..|.+||+.++. .+..+.. . .+..+.|++++ .+++++.+. ...+|.++ ++.... +... ..+..
T Consensus 152 ~~l~~~d~~~~~-~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~---l~~~-~~~~~ 221 (347)
T 2gop_A 152 TTFWIFDTESEE-VIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEK---MFEK-VSFYA 221 (347)
T ss_dssp EEEEEEETTTTE-EEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEE---EEEE-ESEEE
T ss_pred ceEEEEECCCCe-EEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEE---eccC-cceee
Confidence 578999987643 2233433 3 67788999988 666665542 45677666 332211 1111 23433
Q ss_pred EEECCCCcEEEEEeCCC--------cEEEEEcCCCceEEEecccccceeE-EEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 313 TSIRPDSKIAATAGWDR--------RVRIYNYRKGSALAILKYHHATCNA-VSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~h~~~v~~-v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+ +|||++|+.++.++ .|.+|| +++.......|...+.. +.|+ |+ ++++++.|+.++|| +.
T Consensus 222 ~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 222 V--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp E--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred E--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 3 89999888877553 677777 55554445566777886 8999 98 99999999999999 74
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-05 Score=69.38 Aligned_cols=140 Identities=8% Similarity=-0.043 Sum_probs=94.7
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 312 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~ 312 (383)
.++...++.|..||. +..........+...+..+.+++++...++...++.|.+||. .. .... .........+.+
T Consensus 113 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g--~~~~-~~~~~~~~~~~~ 187 (299)
T 2z2n_A 113 WFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SG--DITE-FKIPTPASGPVG 187 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC--CEEE-EECSSTTCCEEE
T ss_pred EEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC--cEEE-eeCCCCCCccee
Confidence 445556789999997 322211112223456788999988765555545678999987 22 2211 112222346889
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCCceEE-EecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYRKGSALA-ILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
+++.+++++.++...++.|.+||. +++... ....+...+.+++++|+|+++++...++.|..||.
T Consensus 188 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 188 ITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred EEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 999999998777767889999999 665432 23335567899999999998887777888999986
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-05 Score=68.95 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=72.9
Q ss_pred CeEEEEEeCCCCceEEE-EcCCcEEEEEccCCCC-e----eEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEc
Q 016769 263 PVLCLSIDESCNGGISG-GADQKIVLYNLDHSTG-S----CVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 336 (383)
Q Consensus 263 ~v~~~~~~~~~~~~~s~-~~d~~i~~wdl~~~~~-~----~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~ 336 (383)
....+.++++++.++.+ ..++.|.+||++..++ . ..+ ...........++++.++|++.++...++.|.+||.
T Consensus 180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~-~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF-IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEE-EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred ccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEE-EECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 45678888888766544 4568899999862222 1 111 111112345678999999998877767789999998
Q ss_pred CCCceEEEecccccceeEEEEe-CCCCEE-EEEeCC
Q 016769 337 RKGSALAILKYHHATCNAVSFS-SDCKLM-ASASED 370 (383)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~v~~s-pd~~~l-as~s~d 370 (383)
+++.+..+..+...+.+++|+ ||++.| ++...+
T Consensus 259 -~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 259 -DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp -TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred -CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 677777777677789999998 898855 444444
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.4e-06 Score=76.98 Aligned_cols=188 Identities=10% Similarity=-0.024 Sum_probs=113.0
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC--cEE
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SIL 243 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg--~i~ 243 (383)
.+++. +.++...++.|+.||+.++.......... ... + .+.+. +. .++++..++ .|.
T Consensus 139 d~~g~--lyv~d~~~~~I~~id~~~g~~~~~~~~~~---------~~~---i---a~~~~---g~-~l~~~d~~~~~~I~ 197 (409)
T 3hrp_A 139 VGNNT--VLAYQRDDPRVRLISVDDNKVTTVHPGFK---------GGK---P---AVTKD---KQ-RVYSIGWEGTHTVY 197 (409)
T ss_dssp CSTTE--EEEEETTTTEEEEEETTTTEEEEEEETCC---------BCB---C---EECTT---SS-EEEEEBSSTTCEEE
T ss_pred eCCCC--EEEEecCCCcEEEEECCCCEEEEeeccCC---------CCc---e---eEecC---CC-cEEEEecCCCceEE
Confidence 34443 44445556789999998776433322110 001 1 12222 11 355555544 788
Q ss_pred EEeCCCCCCceeee---ec-cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEee-eeecCCCCe-E-EEEEC
Q 016769 244 VWDIRNPGIPLTAM---KV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK-EINLERPGI-S-GTSIR 316 (383)
Q Consensus 244 ~wdl~~~~~~~~~~---~~-h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~-~~~~~~~~i-~-~~~~~ 316 (383)
+||...... ...+ .. .......+++++....++.+..++.|..||.+.... ..+.. ........- . .++|+
T Consensus 198 ~~d~~~~~~-~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 198 VYMKASGWA-PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYY 275 (409)
T ss_dssp EEEGGGTTC-EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEE
T ss_pred EEEcCCCce-eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EEEecccccCCCCCCccccEEEe
Confidence 888765332 2222 11 334567889999555666677788899999875431 11100 011111111 2 89999
Q ss_pred CC-CcEEEEEeCCCcEEEEEcCCCceEEEecccc---------------cceeEEEEeCCCCEEEEEe-CCCcEEEEeC
Q 016769 317 PD-SKIAATAGWDRRVRIYNYRKGSALAILKYHH---------------ATCNAVSFSSDCKLMASAS-EDSTVALWEL 378 (383)
Q Consensus 317 p~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~---------------~~v~~v~~spd~~~las~s-~d~~i~~w~~ 378 (383)
|+ +.++++-..+++|+.|+.+.. ...+.++. .....++|+|+|+++++-+ .++.|+.|++
T Consensus 276 p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 276 FVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET
T ss_pred CCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC
Confidence 94 667777778899999998643 33333332 3578999999999889888 8999999995
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.1e-08 Score=92.01 Aligned_cols=174 Identities=12% Similarity=-0.005 Sum_probs=89.4
Q ss_pred ccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCcee
Q 016769 176 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 255 (383)
Q Consensus 176 ~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~ 255 (383)
+++.++.++.||..+++.+.++.. .... +.. +.. .+ ..+++++.|+.|..||.+++.. +-
T Consensus 14 ~gs~dg~v~a~d~~tG~~~W~~~~-~~~~-----------s~p---~~~---~g-~~~v~~s~dg~l~a~d~~tG~~-~w 73 (369)
T 2hz6_A 14 VSTLDGSLHAVSKRTGSIKWTLKE-DPVL-----------QVP---THV---EE-PAFLPDPNDGSLYTLGSKNNEG-LT 73 (369)
T ss_dssp EEETTSEEEEEETTTCCEEEEEEC-CCSC-----------CCC------------CCEEECTTTCCEEEC-----CC-SE
T ss_pred EEcCCCEEEEEECCCCCEEEEecC-CCce-----------ecc---eEc---CC-CEEEEeCCCCEEEEEECCCCce-ee
Confidence 345678999999999998766643 1110 000 111 11 1355668999999999876443 22
Q ss_pred eeecccc-CeE-EEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEE
Q 016769 256 AMKVHLE-PVL-CLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 333 (383)
Q Consensus 256 ~~~~h~~-~v~-~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~i 333 (383)
..+.+.. .+. ...+. .+..+++++.|+.+..||.++.. ...... ... ...++|++..+++++.|+.|+.
T Consensus 74 ~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~--~~w~~~--~~~----~~~~~p~~~~v~~~~~dg~v~a 144 (369)
T 2hz6_A 74 KLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGE--KQQTLS--SAF----ADSLSPSTSLLYLGRTEYTITM 144 (369)
T ss_dssp ECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEEC
T ss_pred eeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCc--EEEEec--CCC----cccccccCCEEEEEecCCEEEE
Confidence 2222211 000 00011 12345677889999999886543 222111 111 2345678888999999999999
Q ss_pred EEcCCCceEEEecccccceeEEEEeCCC---CEEEEEeCCCcEEEEeCCC
Q 016769 334 YNYRKGSALAILKYHHATCNAVSFSSDC---KLMASASEDSTVALWELYP 380 (383)
Q Consensus 334 wd~~~~~~~~~~~~h~~~v~~v~~spd~---~~las~s~d~~i~~w~~~~ 380 (383)
||..+++.+..+..+. ....+++++. ..++.++.|+.|..||...
T Consensus 145 ~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 145 YDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp CCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred EECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 9999998776554221 2223344432 4567789999999999754
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.56 E-value=0.00023 Score=65.07 Aligned_cols=247 Identities=11% Similarity=0.029 Sum_probs=132.2
Q ss_pred eEEEeCCCCeEEEec----------CCCeEEEeeCcccccccccccccc-----cceeeeeeecCCCCcceeEecc-c-C
Q 016769 23 DVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSA-----AHGIVSVATGPSIGLNKVISQG-R-D 85 (383)
Q Consensus 23 ~v~f~~~~~~L~sgs----------~D~~v~vW~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~s~~-~-D 85 (383)
.++|+|||++|+.+. .++.|.+||..+.+.+..+..... ...-..+.++| ++++|+.+. . +
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp--DG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP--NNADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC--CCCEEEEEecCCC
Confidence 789999999999875 367899999977655443322100 01122466777 467776654 3 5
Q ss_pred CeEEEeecCCCCCCCCCeee-eecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 86 GTVKCWDIENGGLSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
++|.++| ++++... . +.. ..| . .
T Consensus 148 ~~v~viD-~t~~~~~----~~i~~---~~~---------------------~---------------------------~ 171 (373)
T 2mad_H 148 PAVGLVV-QGGSSDD----QLLSS---PTC---------------------Y---------------------------H 171 (373)
T ss_pred CeEEEEE-CCCCEEe----EEcCC---Cce---------------------E---------------------------E
Confidence 8899999 8764211 0 000 000 0 0
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEE
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~ 244 (383)
+.+.+++.++ +...++.+.++|+ +++......... .+......+.. ..+.+. +...++.. .++.|.+
T Consensus 172 ~~~~~~~~~~-~~~~dg~~~~vd~-~g~~~~~~~~~~-----~~~~~~p~~~~--~~~~~~---~~~~~~~~-~~~~v~v 238 (373)
T 2mad_H 172 IHPGAPSTFY-LLCAQGGLAKTDH-AGGAAGAGLVGA-----MLTAAQNLLTQ--PAQANK---SGRIVWPV-YSGKILQ 238 (373)
T ss_pred EEeCCCceEE-EEcCCCCEEEEEC-CCcEEEEEeccc-----cccCCcceeec--ceeEec---CCEEEEEc-CCceEEE
Confidence 0112222122 2234678888888 766543221000 00000000000 001111 11122222 5678888
Q ss_pred EeCCCCCC-ceeeeecc----------ccCeEEEEEeCCCCceEEEEc----------CCcEEEEEccCCCCeeEEeeee
Q 016769 245 WDIRNPGI-PLTAMKVH----------LEPVLCLSIDESCNGGISGGA----------DQKIVLYNLDHSTGSCVIKKEI 303 (383)
Q Consensus 245 wdl~~~~~-~~~~~~~h----------~~~v~~~~~~~~~~~~~s~~~----------d~~i~~wdl~~~~~~~~~~~~~ 303 (383)
.|+..... .+..+... -.....+.+++++..++.... .+.|.++|+.... .. ..+
T Consensus 239 id~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~--vv--~~i 314 (373)
T 2mad_H 239 ADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ--TS--SQI 314 (373)
T ss_pred EeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE--EE--EEE
Confidence 88864321 11111110 112334677888777665432 3568888876432 21 222
Q ss_pred ecCCCCeEEEEECCCCc-EEEEEe-CCCcEEEEEcCCCceEEEe
Q 016769 304 NLERPGISGTSIRPDSK-IAATAG-WDRRVRIYNYRKGSALAIL 345 (383)
Q Consensus 304 ~~~~~~i~~~~~~p~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~ 345 (383)
... ....+++|+||++ .++++. .+++|.+||+.+++.+.++
T Consensus 315 ~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 315 SLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 222 3578999999999 777777 4899999999999988773
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.8e-07 Score=82.33 Aligned_cols=157 Identities=13% Similarity=0.025 Sum_probs=78.7
Q ss_pred eccCCcceEEEEecCCCCeeeEeccCcC---CCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC
Q 016769 175 VAGEQLSEVEIWDLNTAERCTRLHQNSC---GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251 (383)
Q Consensus 175 ~~g~~~~~i~~Wdl~~~~~~~~~~~~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~ 251 (383)
++++.++.++.||.++++.+.+...... ..++.. . .. ..+++|+.|+.|..||.+++.
T Consensus 53 v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~---------------~--~~--~~v~~g~~dg~v~a~D~~tG~ 113 (369)
T 2hz6_A 53 LPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCR---------------S--SD--GILYMGKKQDIWYVIDLLTGE 113 (369)
T ss_dssp EECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------------------------CCCCEEEEEEEEECCC---
T ss_pred EEeCCCCEEEEEECCCCceeeeeeccCccccccCceE---------------e--cC--CEEEEEeCCCEEEEEECCCCc
Confidence 3445678999999998886555432100 000000 0 01 135667789999999998754
Q ss_pred CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC---cEEEEEeCC
Q 016769 252 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS---KIAATAGWD 328 (383)
Q Consensus 252 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~---~~l~s~~~d 328 (383)
. +-.+..+. ...+.+.+..+++++.|+.+..||.+.......+ ... .....++.++. ..++.++.|
T Consensus 114 ~-~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~--~~~----~~~~~~~~~~~~~~~~v~~~~~d 182 (369)
T 2hz6_A 114 K-QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA--TYF----DYAASLPEDDVDYKMSHFVSNGD 182 (369)
T ss_dssp ------------------------EEEEEEEEEEECCCSSSSSCCCEE--EEE----EECCBCCCCCTTCCCCEEEEETS
T ss_pred E-EEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeE--ecc----cccCccccCCccccceEEEECCC
Confidence 3 32232222 1223345567788889999999998754432222 111 11223344432 456678899
Q ss_pred CcEEEEEcCCCceEEEeccccccee-EEEEeCCCC
Q 016769 329 RRVRIYNYRKGSALAILKYHHATCN-AVSFSSDCK 362 (383)
Q Consensus 329 g~i~iwd~~~~~~~~~~~~h~~~v~-~v~~spd~~ 362 (383)
|.|+.||..+++.+...+ ...++. ...+++||.
T Consensus 183 g~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 183 GLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGL 216 (369)
T ss_dssp CEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSC
T ss_pred CEEEEEECCCCcEEEEec-CCCceEEEEEecCCce
Confidence 999999999999887765 333443 344556664
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-05 Score=72.78 Aligned_cols=140 Identities=11% Similarity=0.040 Sum_probs=83.4
Q ss_pred EEEEeCCCcEEEEeCCC----CCCce----eeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee
Q 016769 233 VLAGYEDGSILVWDIRN----PGIPL----TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN 304 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~----~~~~~----~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~ 304 (383)
.++.+.|+++.+.|+.. .+... ..+.....|. . .+.+..++..+. +.+.+.|+....... ...+.
T Consensus 178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v--~~~~~ 250 (368)
T 1mda_H 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATM--KAAID 250 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEE--ECCCC
T ss_pred EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceE--EEEEE
Confidence 34556688888888765 11111 0111122343 2 444444455455 788888875432111 11111
Q ss_pred cC-------C---CCeEEEEECCCCcEEEEEeC---------CCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EE
Q 016769 305 LE-------R---PGISGTSIRPDSKIAATAGW---------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LM 364 (383)
Q Consensus 305 ~~-------~---~~i~~~~~~p~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~l 364 (383)
.. . .+...++|+|+++.+..+.. ++.+.++|+.+.+.+..+.-.. ....++|+|||+ .+
T Consensus 251 ~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~ 329 (368)
T 1mda_H 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDN 329 (368)
T ss_dssp SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEE
T ss_pred eccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEE
Confidence 10 0 11122789999887665432 2356699999999888776444 588999999998 56
Q ss_pred EEEe-CCCcEEEEeCCC
Q 016769 365 ASAS-EDSTVALWELYP 380 (383)
Q Consensus 365 as~s-~d~~i~~w~~~~ 380 (383)
++.. .++.|.++|+..
T Consensus 330 va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 330 YANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEEETTTTEEEEEESSS
T ss_pred EEccCCCCeEEEEECCC
Confidence 6666 599999999853
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-05 Score=80.74 Aligned_cols=135 Identities=6% Similarity=0.007 Sum_probs=84.6
Q ss_pred cEEEEeCCCCCC-ceeeeec--cccCeEEEEEeCCCCceEEEEcCC-----cEEEEEccCCCCeeEEeeeeecCCCCeEE
Q 016769 241 SILVWDIRNPGI-PLTAMKV--HLEPVLCLSIDESCNGGISGGADQ-----KIVLYNLDHSTGSCVIKKEINLERPGISG 312 (383)
Q Consensus 241 ~i~~wdl~~~~~-~~~~~~~--h~~~v~~~~~~~~~~~~~s~~~d~-----~i~~wdl~~~~~~~~~~~~~~~~~~~i~~ 312 (383)
.|.+|++.++.. ....... +...+..+.++++++.++..+.++ .|.+||++...... .. .+.........
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~-~~-~l~~~~~~~~~ 321 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP-VT-ALIPDLKAQWD 321 (741)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC-CE-EEECSSSSCEE
T ss_pred EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc-cE-EecCCCCceEE
Confidence 489999876432 1122222 223477889999999887666543 78999987542110 01 11112222333
Q ss_pred EEECCCCcEEEEEeCC----CcEEEEEcCCC--ceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 313 TSIRPDSKIAATAGWD----RRVRIYNYRKG--SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~d----g~i~iwd~~~~--~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
. ++|+++.|+..+.+ +.|.+||+.++ +....+..+...+..++|+ ++.++++...|+..+||.+.
T Consensus 322 ~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 322 F-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 3 34888888877764 45999999875 3333444455556678887 66788999999999888653
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00029 Score=64.22 Aligned_cols=272 Identities=14% Similarity=0.089 Sum_probs=142.9
Q ss_pred CCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecC
Q 016769 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (383)
Q Consensus 30 ~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~ 109 (383)
+..|+.++.|+.|..+|..+++..-...... .+.+. +...+..++.++.++.+..+|.++++. .+..
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~---~~~~~---p~~~~~~v~v~~~~g~l~~~d~~tG~~----~W~~--- 169 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAG---EALSR---PVVSDGLVLIHTSNGQLQALNEADGAV----KWTV--- 169 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSS---CCCSC---CEEETTEEEEECTTSEEEEEETTTCCE----EEEE---
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCC---ceEcC---CEEECCEEEEEcCCCeEEEEECCCCcE----EEEE---
Confidence 4567778889999999988776542221111 11110 111135677778889999999887742 1110
Q ss_pred ceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecC
Q 016769 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLN 189 (383)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~ 189 (383)
.... +... . . . .....+ . +. .+. .+..++.+..+|.+
T Consensus 170 -------~~~~-~~~~--~-~-------------------~------~~~~~~----~-~~-~v~-~g~~~g~l~~~d~~ 206 (376)
T 3q7m_A 170 -------NLDM-PSLS--L-R-------------------G------ESAPTT----A-FG-AAV-VGGDNGRVSAVLME 206 (376)
T ss_dssp -------ECCC---------C-------------------C------CCCCEE----E-TT-EEE-ECCTTTEEEEEETT
T ss_pred -------eCCC-Ccee--e-c-------------------C------CCCcEE----E-CC-EEE-EEcCCCEEEEEECC
Confidence 0000 0000 0 0 0 000000 1 11 222 34556789999999
Q ss_pred CCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEE
Q 016769 190 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI 269 (383)
Q Consensus 190 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~ 269 (383)
+++.+.+..............-.......+ . .. ..+..++.++.|..+|.+++.. +-.. .......+..
T Consensus 207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~--~----~~--~~v~~~~~~g~l~~~d~~tG~~-~w~~--~~~~~~~~~~ 275 (376)
T 3q7m_A 207 QGQMIWQQRISQATGSTEIDRLSDVDTTPV--V----VN--GVVFALAYNGNLTALDLRSGQI-MWKR--ELGSVNDFIV 275 (376)
T ss_dssp TCCEEEEEECCC-----------CCCCCCE--E----ET--TEEEEECTTSCEEEEETTTCCE-EEEE--CCCCEEEEEE
T ss_pred CCcEEEEEecccCCCCcccccccccCCCcE--E----EC--CEEEEEecCcEEEEEECCCCcE-Eeec--cCCCCCCceE
Confidence 988765554211000000000000000000 0 01 1466778899999999887542 2111 1223334444
Q ss_pred eCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccc
Q 016769 270 DESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH 349 (383)
Q Consensus 270 ~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~ 349 (383)
+ +..++.++.++.+..+|.++. ........ ..........+ .+..|+.++.+|.+..+|..+++.+.......
T Consensus 276 ~--~~~l~~~~~~g~l~~~d~~tG--~~~w~~~~-~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~ 348 (376)
T 3q7m_A 276 D--GNRIYLVDQNDRVMALTIDGG--VTLWTQSD-LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDS 348 (376)
T ss_dssp E--TTEEEEEETTCCEEEEETTTC--CEEEEECT-TTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCT
T ss_pred E--CCEEEEEcCCCeEEEEECCCC--cEEEeecc-cCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCC
Confidence 4 346777888999999988654 33332220 11112222222 24567888999999999999999887665433
Q ss_pred cceeE-EEEeCCCCEEEEEeCCCcEEEEe
Q 016769 350 ATCNA-VSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 350 ~~v~~-v~~spd~~~las~s~d~~i~~w~ 377 (383)
..+.+ ... .+..|..++.||.|..|+
T Consensus 349 ~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 349 SGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 33322 222 245778899999999987
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00043 Score=63.05 Aligned_cols=267 Identities=8% Similarity=0.048 Sum_probs=144.1
Q ss_pred CCCeEEEecCCCeEEEeeCcccccccccccccc-------cceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCC
Q 016769 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-------AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101 (383)
Q Consensus 29 ~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~ 101 (383)
++..|+.++.++.|..+|..+++.+-....... ...+.+. +...+..++.++.|+.|..+|.++++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~v~~~~g~l~a~d~~tG~~--- 125 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG---VTVSGGHVYIGSEKAQVYALNTSDGTV--- 125 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE---EEEETTEEEEEETTSEEEEEETTTCCE---
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC---ceEeCCEEEEEcCCCEEEEEECCCCCE---
Confidence 456788889999999999987765422111100 1111111 111235677788889999999988742
Q ss_pred CeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcc
Q 016769 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLS 181 (383)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 181 (383)
.+.. .+.. . .. ....+ . +. .+.+ +..++
T Consensus 126 -~W~~----------~~~~-~---------------------~~------------~~p~~----~-~~-~v~v-~~~~g 153 (376)
T 3q7m_A 126 -AWQT----------KVAG-E---------------------AL------------SRPVV----S-DG-LVLI-HTSNG 153 (376)
T ss_dssp -EEEE----------ECSS-C---------------------CC------------SCCEE----E-TT-EEEE-ECTTS
T ss_pred -EEEE----------eCCC-c---------------------eE------------cCCEE----E-CC-EEEE-EcCCC
Confidence 1110 0000 0 00 00000 1 11 1222 34567
Q ss_pred eEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccc
Q 016769 182 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 261 (383)
Q Consensus 182 ~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~ 261 (383)
.+..+|.++++.+-+.......... ......+ . .. ..++.++.++.|..+|.+++.. +-......
T Consensus 154 ~l~~~d~~tG~~~W~~~~~~~~~~~------~~~~~~~--~----~~--~~v~~g~~~g~l~~~d~~tG~~-~w~~~~~~ 218 (376)
T 3q7m_A 154 QLQALNEADGAVKWTVNLDMPSLSL------RGESAPT--T----AF--GAAVVGGDNGRVSAVLMEQGQM-IWQQRISQ 218 (376)
T ss_dssp EEEEEETTTCCEEEEEECCC-----------CCCCCCE--E----ET--TEEEECCTTTEEEEEETTTCCE-EEEEECCC
T ss_pred eEEEEECCCCcEEEEEeCCCCceee------cCCCCcE--E----EC--CEEEEEcCCCEEEEEECCCCcE-EEEEeccc
Confidence 8999999999877655432110000 0000000 0 01 1467788899999999877542 21111110
Q ss_pred c-------C---eEE-EEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCc
Q 016769 262 E-------P---VLC-LSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 330 (383)
Q Consensus 262 ~-------~---v~~-~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~ 330 (383)
. . +.. ..+. +..++.++.++.+..+|.... ....... ......... ++..+..++.++.
T Consensus 219 ~~~~~~~~~~~~~~~~p~~~--~~~v~~~~~~g~l~~~d~~tG--~~~w~~~----~~~~~~~~~--~~~~l~~~~~~g~ 288 (376)
T 3q7m_A 219 ATGSTEIDRLSDVDTTPVVV--NGVVFALAYNGNLTALDLRSG--QIMWKRE----LGSVNDFIV--DGNRIYLVDQNDR 288 (376)
T ss_dssp -----------CCCCCCEEE--TTEEEEECTTSCEEEEETTTC--CEEEEEC----CCCEEEEEE--ETTEEEEEETTCC
T ss_pred CCCCcccccccccCCCcEEE--CCEEEEEecCcEEEEEECCCC--cEEeecc----CCCCCCceE--ECCEEEEEcCCCe
Confidence 0 0 000 0111 245667778899999987644 3332221 123344444 3456777888999
Q ss_pred EEEEEcCCCceEEEeccc-ccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 331 VRIYNYRKGSALAILKYH-HATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 331 i~iwd~~~~~~~~~~~~h-~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+..+|..+++.+...... ...+..... .+..|..++.+|.+.++|...
T Consensus 289 l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 289 VMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp EEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred EEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence 999999999988766522 222222333 246788889999999998754
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=3.2e-05 Score=76.57 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=42.2
Q ss_pred CcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 329 RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 329 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+.|..||+.+++.+..+. +..++....+++++.+++.++.|+.+++||+..
T Consensus 457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred cEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence 789999999999988775 444556666778888999999999999999854
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00016 Score=71.64 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=51.8
Q ss_pred CcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccc-cceeEEEEeCCC
Q 016769 283 QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH-ATCNAVSFSSDC 361 (383)
Q Consensus 283 ~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~spd~ 361 (383)
+.|..||+.+. +...+.... ....+..+...+..++.++.||.+++||..+++.+..+.-.. ..-.-+.|.++|
T Consensus 457 g~l~A~D~~tG--~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G 531 (677)
T 1kb0_A 457 GRLLAWDPVAQ--KAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDG 531 (677)
T ss_dssp EEEEEEETTTT--EEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred cEEEEEeCCCC--cEEeecCCC---CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCC
Confidence 67888888643 333332221 122333455667788889999999999999999998776332 222334567899
Q ss_pred C-EEEEEe
Q 016769 362 K-LMASAS 368 (383)
Q Consensus 362 ~-~las~s 368 (383)
+ +++..+
T Consensus 532 ~~~v~~~~ 539 (677)
T 1kb0_A 532 RQYVSVAV 539 (677)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 8 444433
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00018 Score=62.84 Aligned_cols=140 Identities=6% Similarity=-0.068 Sum_probs=93.1
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 312 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~ 312 (383)
.++...++.|..+|.. .......+......+..+.+++++...++...++.|..+|.+ . .... .........+.+
T Consensus 118 ~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g--~~~~-~~~~~~~~~~~~ 192 (300)
T 2qc5_A 118 WFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-G--KLEE-YPLPTNAAAPVG 192 (300)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-C--CEEE-EECSSTTCCEEE
T ss_pred EEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-C--cEEE-eeCCCCCCCcce
Confidence 4455557889999876 332111122234567889999888744444446788888863 2 2211 112222346889
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCCceEE-EecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYRKGSALA-ILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
+++.++++..++....+.|.+||. +++... ....+...+.++++.|+|++.++...++.|..||.
T Consensus 193 i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 193 ITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred EEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 999999988777767788999998 554433 23334567889999999998887777788988876
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-05 Score=70.12 Aligned_cols=142 Identities=11% Similarity=0.140 Sum_probs=90.2
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 312 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~ 312 (383)
+++...++.|..||..+... ..+. ....+.++.+++++. ++.+. ++.|.+||.+..................++.
T Consensus 28 ~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~d 102 (297)
T 3g4e_A 28 LFVDIPAKKVCRWDSFTKQV--QRVT-MDAPVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFND 102 (297)
T ss_dssp EEEETTTTEEEEEETTTCCE--EEEE-CSSCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEE
T ss_pred EEEECCCCEEEEEECCCCcE--EEEe-CCCceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCC
Confidence 45666788999999876432 2222 245788999999887 44444 6779999886432211111100111235788
Q ss_pred EEECCCCcEEEEEeCC---------CcEEEEEcCCCceEEEecccccceeEEEEeCCCCEE-EEEeCCCcEEEEeCC
Q 016769 313 TSIRPDSKIAATAGWD---------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASEDSTVALWELY 379 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~l-as~s~d~~i~~w~~~ 379 (383)
++++|+|+++++...+ ..-.+|.++.......+..+....+.++|+||++.| ++.+.++.|.+|++.
T Consensus 103 i~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d 179 (297)
T 3g4e_A 103 GKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYD 179 (297)
T ss_dssp EEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred EEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence 9999999976654322 334566665333333333445567899999999854 677778999999874
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00012 Score=72.49 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=52.9
Q ss_pred CcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEeccccc-ceeEEEEeCCC
Q 016769 283 QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA-TCNAVSFSSDC 361 (383)
Q Consensus 283 ~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~v~~spd~ 361 (383)
+.|..||+.+. +...+..... ....-.+...+..++.++.||.++.||.++++.+..++.... ...-+.|..||
T Consensus 455 g~l~A~D~~tG--~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G 529 (689)
T 1yiq_A 455 GKLIAWDPVKQ--QAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDG 529 (689)
T ss_dssp EEEEEEETTTT--EEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred eeEEEEECCCC--CeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECC
Confidence 67888988644 3333322211 122224445677888899999999999999999987764322 22335678899
Q ss_pred C-EEEEEeC
Q 016769 362 K-LMASASE 369 (383)
Q Consensus 362 ~-~las~s~ 369 (383)
+ +++..+.
T Consensus 530 ~qyv~~~~G 538 (689)
T 1yiq_A 530 EQYVTFMAG 538 (689)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEec
Confidence 8 5555443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00016 Score=71.71 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=41.8
Q ss_pred CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 328 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 328 dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+|+|+.||+.+++.+..+..+. +...-.++..+.+++.|+.|+.++.||...
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~t 505 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADT 505 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred ceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCC
Confidence 4789999999999988776443 344446677888999999999999999854
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.37 E-value=3.9e-05 Score=67.80 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=87.6
Q ss_pred EEEEeCCCcEEEEeCCCCCCceee-ee----ccccCeEEEEEeCCCCceEEEEcC---------------CcEEEEEccC
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTA-MK----VHLEPVLCLSIDESCNGGISGGAD---------------QKIVLYNLDH 292 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~-~~----~h~~~v~~~~~~~~~~~~~s~~~d---------------~~i~~wdl~~ 292 (383)
+..+...+.|.+||.. ... ... .. .....+..+.+++++...++...+ +.|..||.+
T Consensus 85 l~v~~~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 85 LFVADMRLGLLVVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp EEEEETTTEEEEEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred EEEEECCCCEEEEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence 4445545579999987 332 211 11 112357889999988755554444 345555543
Q ss_pred CCCeeEEeeeeecCCCCeEEEEEC----CCCcEEEEE-eCCCcEEEEEcC-CCc-----eEEEecccc-cceeEEEEeCC
Q 016769 293 STGSCVIKKEINLERPGISGTSIR----PDSKIAATA-GWDRRVRIYNYR-KGS-----ALAILKYHH-ATCNAVSFSSD 360 (383)
Q Consensus 293 ~~~~~~~~~~~~~~~~~i~~~~~~----p~~~~l~s~-~~dg~i~iwd~~-~~~-----~~~~~~~h~-~~v~~v~~spd 360 (383)
+..... . ........++++ |+++.+..+ ..++.|.+||+. +++ ....+..+. ..+..++++++
T Consensus 162 --g~~~~~--~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~ 236 (314)
T 1pjx_A 162 --GQMIQV--D-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED 236 (314)
T ss_dssp --SCEEEE--E-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred --CCEEEe--c-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCC
Confidence 222111 1 111346788999 999755444 568999999986 443 223333443 56788999999
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 016769 361 CKLMASASEDSTVALWELY 379 (383)
Q Consensus 361 ~~~las~s~d~~i~~w~~~ 379 (383)
|+++++...++.|.+||..
T Consensus 237 G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 237 NNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp CCEEEEEETTTEEEEECTT
T ss_pred CCEEEEEcCCCEEEEEcCC
Confidence 9999988889999999864
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00013 Score=67.61 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=53.4
Q ss_pred EEEeCCCCceEEEEc----------CCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCc-EEEEEeC-CCcEEEE
Q 016769 267 LSIDESCNGGISGGA----------DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK-IAATAGW-DRRVRIY 334 (383)
Q Consensus 267 ~~~~~~~~~~~s~~~----------d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~l~s~~~-dg~i~iw 334 (383)
+.+++++..++.... ++.|.++|+..... .. .+... ....+++|+||++ +++++.+ +++|.++
T Consensus 324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv--v~--~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER--IN--KIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--EE--EEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE--EE--EEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence 678888776655432 34688888865432 21 12111 2477899999999 8888884 9999999
Q ss_pred EcCCCceEEEe
Q 016769 335 NYRKGSALAIL 345 (383)
Q Consensus 335 d~~~~~~~~~~ 345 (383)
|+.+++.+.++
T Consensus 399 D~~t~kvv~tI 409 (426)
T 3c75_H 399 DAATGEELRSV 409 (426)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCCEEEEe
Confidence 99999999886
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.0016 Score=60.05 Aligned_cols=128 Identities=20% Similarity=0.238 Sum_probs=80.9
Q ss_pred CCCcEEEEeCCCCCCceeeeecc--ccCeEEEEE--eCCCCceEEEE------cCCcEEEEEccCCCCeeEEeeee--ec
Q 016769 238 EDGSILVWDIRNPGIPLTAMKVH--LEPVLCLSI--DESCNGGISGG------ADQKIVLYNLDHSTGSCVIKKEI--NL 305 (383)
Q Consensus 238 ~dg~i~~wdl~~~~~~~~~~~~h--~~~v~~~~~--~~~~~~~~s~~------~d~~i~~wdl~~~~~~~~~~~~~--~~ 305 (383)
.+.+|.+||+.+ ...+.++... ......+.| ++++..++.++ .+++|.+|..+. +.....+.+ ..
T Consensus 226 ~~d~V~v~D~~~-~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~ 302 (462)
T 2ece_A 226 YGNRIHFWDLRK-RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPA 302 (462)
T ss_dssp SCCEEEEEETTT-TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECC
T ss_pred cCCEEEEEECCC-CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCC
Confidence 478999999987 3444555432 122334445 99888776655 566888777664 222222211 00
Q ss_pred ---C-------------CCCeEEEEECCCCcEEEEEeC-CCcEEEEEcCC---CceEEEeccc-----------c---cc
Q 016769 306 ---E-------------RPGISGTSIRPDSKIAATAGW-DRRVRIYNYRK---GSALAILKYH-----------H---AT 351 (383)
Q Consensus 306 ---~-------------~~~i~~~~~~p~~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~~h-----------~---~~ 351 (383)
. ......+.++||+++|.++.+ .+.|.+||+.. .+.+..+.-. . ..
T Consensus 303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~gg 382 (462)
T 2ece_A 303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGA 382 (462)
T ss_dssp EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCC
Confidence 0 234678999999998887775 78999999853 3444433211 0 12
Q ss_pred eeEEEEeCCCCEEEEEe
Q 016769 352 CNAVSFSSDCKLMASAS 368 (383)
Q Consensus 352 v~~v~~spd~~~las~s 368 (383)
...++++|||++|..+.
T Consensus 383 Pr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 383 PQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSSEEEEEC
T ss_pred CCEEEEcCCCCEEEEEc
Confidence 46788999999888887
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.6e-05 Score=70.43 Aligned_cols=142 Identities=10% Similarity=0.007 Sum_probs=90.9
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
.++++..++.|..|+.. +. ...+..+...+..+.+++++..+++...++.|.+|+.+ .+...............++
T Consensus 59 l~~~d~~~~~i~~~~~~-g~--~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~ 134 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWRED-GT--VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN 134 (305)
T ss_dssp EEEEETTTTEEEEEETT-SC--EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC
T ss_pred EEEEECCCCEEEEEeCC-CC--EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC
Confidence 35667788999999873 22 34444455678889999988744433345789999875 2211111111111123467
Q ss_pred EEEECCCCcEEEE----EeC-------------CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCC----
Q 016769 312 GTSIRPDSKIAAT----AGW-------------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED---- 370 (383)
Q Consensus 312 ~~~~~p~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d---- 370 (383)
.+++.|+|++.++ |.. .+.|..||..+++..... .....+.++|+||++.|..+..+
T Consensus 135 ~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~ 212 (305)
T 3dr2_A 135 DLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGH 212 (305)
T ss_dssp CEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---
T ss_pred CEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCC
Confidence 8999999998876 332 246777777666644332 44567889999999977666554
Q ss_pred --CcEEEEeCC
Q 016769 371 --STVALWELY 379 (383)
Q Consensus 371 --~~i~~w~~~ 379 (383)
+.|.+|++.
T Consensus 213 ~~~~i~~~~~~ 223 (305)
T 3dr2_A 213 GSVEITAFAWR 223 (305)
T ss_dssp CCCEEEEEEEE
T ss_pred CCCEEEEEEec
Confidence 689988864
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=5.3e-05 Score=75.33 Aligned_cols=191 Identities=7% Similarity=0.038 Sum_probs=105.7
Q ss_pred ccCCCCCceeee---ccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCC-
Q 016769 164 DVPAEGPKYMAV---AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED- 239 (383)
Q Consensus 164 ~~~~~~~~~~~~---~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~d- 239 (383)
.++++|+.++.+ .|+...+|++||+++++.+..........++..+ ++. .++.+..+
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~------------------~l~y~~~~~ 195 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNE------------------GFFYSSYDK 195 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTT------------------EEEEEESSC
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCC------------------EEEEEEecC
Confidence 356777643322 3444468999999998854322111101111222 111 23333333
Q ss_pred ------------CcEEEEeCCCCCC-ceeee--ec-cccCeEEEEEeCCCCceEEE-E---cCCcEEEEEccCCCCeeEE
Q 016769 240 ------------GSILVWDIRNPGI-PLTAM--KV-HLEPVLCLSIDESCNGGISG-G---ADQKIVLYNLDHSTGSCVI 299 (383)
Q Consensus 240 ------------g~i~~wdl~~~~~-~~~~~--~~-h~~~v~~~~~~~~~~~~~s~-~---~d~~i~~wdl~~~~~~~~~ 299 (383)
..|++|++.++.. ..... .. |...+..+.+++++..++.. + ..+.|.++|++.......
T Consensus 196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~- 274 (693)
T 3iuj_A 196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL- 274 (693)
T ss_dssp CC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-
T ss_pred cccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE-
Confidence 4599999976532 11222 22 33346778899999876433 2 235789999876542221
Q ss_pred eeeeecCCCCeEEEEECCCCcEEE-EEeCC---CcEEEEEcCCCce--EEEecccccceeEEEEeCCCCEEEEEeCCC--
Q 016769 300 KKEINLERPGISGTSIRPDSKIAA-TAGWD---RRVRIYNYRKGSA--LAILKYHHATCNAVSFSSDCKLMASASEDS-- 371 (383)
Q Consensus 300 ~~~~~~~~~~i~~~~~~p~~~~l~-s~~~d---g~i~iwd~~~~~~--~~~~~~h~~~v~~v~~spd~~~las~s~d~-- 371 (383)
.+.......... ++++++.|+ .+..+ ++|..+|+.++.. ...+..|...+. .|+|++++|+....++
T Consensus 275 --~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~ 349 (693)
T 3iuj_A 275 --TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDAT 349 (693)
T ss_dssp --EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTE
T ss_pred --EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCe
Confidence 111222223333 555655444 44333 6799999987654 234555666665 8999999877666544
Q ss_pred -cEEEEeCC
Q 016769 372 -TVALWELY 379 (383)
Q Consensus 372 -~i~~w~~~ 379 (383)
.|++|++.
T Consensus 350 ~~l~~~d~~ 358 (693)
T 3iuj_A 350 ARVEQFDYE 358 (693)
T ss_dssp EEEEEECTT
T ss_pred eEEEEEECC
Confidence 57788763
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0007 Score=58.36 Aligned_cols=176 Identities=7% Similarity=-0.030 Sum_probs=109.5
Q ss_pred cceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeec
Q 016769 180 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 259 (383)
Q Consensus 180 ~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~ 259 (383)
.+.|++.|+++++.+..+.-+. ..+...+. + . +....++.-.++.+.++|..+. ..+..+..
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~-----------~~fgeGi~-~--~---g~~lyv~t~~~~~v~viD~~t~-~v~~~i~~ 104 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDD-----------SYFGEGLT-L--L---NEKLYQVVWLKNIGFIYDRRTL-SNIKNFTH 104 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCT-----------TCCEEEEE-E--E---TTEEEEEETTCSEEEEEETTTT-EEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEecCC-----------CcceEEEE-E--e---CCEEEEEEecCCEEEEEECCCC-cEEEEEEC
Confidence 5789999999999776654211 00111111 1 1 1123345567889999998863 34555543
Q ss_pred c-ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeec---CCCCeEEEEECCCCcEEEEEeCCCcEEEEE
Q 016769 260 H-LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL---ERPGISGTSIRPDSKIAATAGWDRRVRIYN 335 (383)
Q Consensus 260 h-~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~---~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd 335 (383)
. .+. ..++. ++..++.+..++.+.++|.+.......+ .... .....+.+.+. +++.++..-.++.|.+.|
T Consensus 105 g~~~g-~glt~--Dg~~l~vs~gs~~l~viD~~t~~v~~~I--~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID 178 (266)
T 2iwa_A 105 QMKDG-WGLAT--DGKILYGSDGTSILYEIDPHTFKLIKKH--NVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARIS 178 (266)
T ss_dssp CSSSC-CEEEE--CSSSEEEECSSSEEEEECTTTCCEEEEE--ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred CCCCe-EEEEE--CCCEEEEECCCCeEEEEECCCCcEEEEE--EECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEE
Confidence 2 111 23444 4566666666788888887643321111 1111 11236677887 776555554688999999
Q ss_pred cCCCceEEEeccc---c----------cceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 336 YRKGSALAILKYH---H----------ATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 336 ~~~~~~~~~~~~h---~----------~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
..+++.+..+.-. . ...+.|+|+|+++ .++++.....|..-++.
T Consensus 179 ~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 179 AKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp TTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred CCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 9999988877521 0 2458999999987 77788888888887764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=7.5e-05 Score=66.88 Aligned_cols=138 Identities=12% Similarity=-0.005 Sum_probs=86.5
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee--cCCCC
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN--LERPG 309 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~--~~~~~ 309 (383)
.++++..++.|..||..+.. ...+. ....+.++.+++++..++ ++ +..|.+||.+....... .... .....
T Consensus 63 l~~~d~~~~~i~~~d~~~~~--~~~~~-~~~~v~~i~~~~dg~l~v-~~-~~gl~~~d~~~g~~~~~--~~~~~~~~~~~ 135 (326)
T 2ghs_A 63 AWWFNILERELHELHLASGR--KTVHA-LPFMGSALAKISDSKQLI-AS-DDGLFLRDTATGVLTLH--AELESDLPGNR 135 (326)
T ss_dssp EEEEEGGGTEEEEEETTTTE--EEEEE-CSSCEEEEEEEETTEEEE-EE-TTEEEEEETTTCCEEEE--ECSSTTCTTEE
T ss_pred EEEEECCCCEEEEEECCCCc--EEEEE-CCCcceEEEEeCCCeEEE-EE-CCCEEEEECCCCcEEEE--eeCCCCCCCCC
Confidence 35566678899999987632 22222 235688899988876544 44 44588898764432111 1111 11235
Q ss_pred eEEEEECCCCcEEEEEeC------CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEE-EEEeCCCcEEEEeCC
Q 016769 310 ISGTSIRPDSKIAATAGW------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASEDSTVALWELY 379 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~l-as~s~d~~i~~w~~~ 379 (383)
++.++++|+|+++++... .+.|..+| +++ +..+..+....+.++|+||++.| ++.+.++.|.+|++.
T Consensus 136 ~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 136 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 789999999997765542 24455555 444 33333344457889999999865 555667899999974
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00036 Score=63.44 Aligned_cols=87 Identities=7% Similarity=-0.006 Sum_probs=59.6
Q ss_pred EEEeCCCCceEEEEc---------CCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCc-EEEEEe-CCCcEEEEE
Q 016769 267 LSIDESCNGGISGGA---------DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK-IAATAG-WDRRVRIYN 335 (383)
Q Consensus 267 ~~~~~~~~~~~s~~~---------d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~l~s~~-~dg~i~iwd 335 (383)
+.+++++..++.+.. ++.+.++|+..... . ..+... ....+++|+||++ .+++.. .+++|.++|
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v--v--~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--S--GPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--E--ECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE--E--EEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 678888887765432 23566999875432 1 122221 2478899999997 566666 599999999
Q ss_pred cCCCceEEEecccccceeEEEEeC
Q 016769 336 YRKGSALAILKYHHATCNAVSFSS 359 (383)
Q Consensus 336 ~~~~~~~~~~~~h~~~v~~v~~sp 359 (383)
+.+++.+.++.-... ...+++.+
T Consensus 344 ~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 344 AASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp SSSCEEEEECCCCSC-CCEEECCC
T ss_pred CCCCcEEEEEECCCC-CCEEEeec
Confidence 999999988864443 45666654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00017 Score=66.51 Aligned_cols=196 Identities=13% Similarity=0.148 Sum_probs=111.0
Q ss_pred CCceeeeccCCcceEEEEecCCC----CeeeEeccCcCCCCCCcCCCCCceeeEE-EeecCCCCCCceEEEEEeCC----
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAV-QAYLPSKSQGFVNVLAGYED---- 239 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~----~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sg~~d---- 239 (383)
..+++.+.+..++.|.+.|+.+. +....+..... +. ..+..... ....|+ + .++++..+
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~-----~~--~~g~s~Ph~~~~~pd---G--i~Vs~~g~~~g~ 161 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEV-----KK--VSGYSRLHTVHCGPD---A--IYISALGNEEGE 161 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHH-----HH--HHCEEEEEEEEECSS---C--EEEEEEEETTSC
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhc-----cc--ccCCCcccceeECCC---e--EEEEcCCCcCCC
Confidence 34678888888889999999754 23333310000 00 00000000 001222 1 34444333
Q ss_pred --CcEEEEeCCCCCCceeeeeccccC---eEEEEEeCCCCceEEEE-------------------cCCcEEEEEccCCCC
Q 016769 240 --GSILVWDIRNPGIPLTAMKVHLEP---VLCLSIDESCNGGISGG-------------------ADQKIVLYNLDHSTG 295 (383)
Q Consensus 240 --g~i~~wdl~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~~s~~-------------------~d~~i~~wdl~~~~~ 295 (383)
+.|.+.|.++.. .+........+ -..+-+++..+.+++.. .+.+|.+||++..
T Consensus 162 ~~g~v~vlD~~T~~-v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-- 238 (462)
T 2ece_A 162 GPGGILMLDHYSFE-PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-- 238 (462)
T ss_dssp SCCEEEEECTTTCC-EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--
T ss_pred CCCeEEEEECCCCe-EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--
Confidence 789999988643 34444322111 12355688888766664 3788999999853
Q ss_pred eeEEeeeeecC--CCCeEEEEE--CCCCcEEEEEe------CCCcEEEEEcCCCce--EEE--eccc-------------
Q 016769 296 SCVIKKEINLE--RPGISGTSI--RPDSKIAATAG------WDRRVRIYNYRKGSA--LAI--LKYH------------- 348 (383)
Q Consensus 296 ~~~~~~~~~~~--~~~i~~~~~--~p~~~~l~s~~------~dg~i~iwd~~~~~~--~~~--~~~h------------- 348 (383)
+.. ..+... ......+.| +|+++++..++ .+++|.+|..+.++. ... +...
T Consensus 239 k~~--~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 239 KRI--HSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp EEE--EEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred cEe--eEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 222 223322 123445555 99999877776 567888776654421 111 1110
Q ss_pred ---ccceeEEEEeCCCCEE-EEEeCCCcEEEEeCCCC
Q 016769 349 ---HATCNAVSFSSDCKLM-ASASEDSTVALWELYPP 381 (383)
Q Consensus 349 ---~~~v~~v~~spd~~~l-as~s~d~~i~~w~~~~~ 381 (383)
......+.+||||++| ++.-..+.|.+||+.+|
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 2346788999999955 55555789999999755
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0045 Score=54.71 Aligned_cols=134 Identities=10% Similarity=-0.022 Sum_probs=83.6
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 312 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~ 312 (383)
+..++ +.|..+| .++. .+-........+.++..++++ .+..++.++.+..+|.+ +...... ......+..
T Consensus 190 l~v~t--~~l~~~d-~~g~-~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~~---g~~~~~~--~~~~~~~~~ 259 (330)
T 3hxj_A 190 IYFGS--DKVYAIN-PDGT-EKWNFYAGYWTVTRPAISEDG-TIYVTSLDGHLYAINPD---GTEKWRF--KTGKRIESS 259 (330)
T ss_dssp EEEES--SSEEEEC-TTSC-EEEEECCSSCCCSCCEECTTS-CEEEEETTTEEEEECTT---SCEEEEE--ECSSCCCSC
T ss_pred EEEEe--CEEEEEC-CCCc-EEEEEccCCcceeceEECCCC-eEEEEcCCCeEEEECCC---CCEeEEe--eCCCCcccc
Confidence 45555 7888898 4432 232333333456677777765 45667778888888632 2222221 122222344
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+.+.+++. |..++.++.|..+|. +++.+..+......+.++...++|++ ..|+.+|.+++....
T Consensus 260 ~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 260 PVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYALFNL 323 (330)
T ss_dssp CEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEEEC-
T ss_pred ceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEEecc
Confidence 55665664 556788889999996 67777666545556777777788765 458899999998764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.002 Score=54.96 Aligned_cols=164 Identities=14% Similarity=0.146 Sum_probs=96.3
Q ss_pred ceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeecc
Q 016769 181 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 260 (383)
Q Consensus 181 ~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h 260 (383)
+.|+..|+++++.+.++.-+. ..+...+.. . +....+..-.++.+.++|.++. ..+..+...
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~-----------~~FgeGit~---~---g~~ly~ltw~~~~v~v~D~~t~-~~~~ti~~~ 126 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGK-----------RYFGEGISD---W---KDKIVGLTWKNGLGFVWNIRNL-RQVRSFNYD 126 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCT-----------TCCEEEEEE---E---TTEEEEEESSSSEEEEEETTTC-CEEEEEECS
T ss_pred ceEEEEECCCCcEEEEEecCC-----------ccceeEEEE---e---CCEEEEEEeeCCEEEEEECccC-cEEEEEECC
Confidence 489999999999877664211 111111111 1 1122334556889999998874 345556543
Q ss_pred ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeec---CCCCeEEEEECCCCcEEEEEeCCCcEEEEEcC
Q 016769 261 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL---ERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 337 (383)
Q Consensus 261 ~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~---~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~ 337 (383)
.+. ..++. ++..++.+..++.|.++|...... ........ .-..++.+.+. +|+..+..-.+..|.+.|..
T Consensus 127 ~eG-~glt~--dg~~L~~SdGs~~i~~iDp~T~~v--~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~ 200 (262)
T 3nol_A 127 GEG-WGLTH--NDQYLIMSDGTPVLRFLDPESLTP--VRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE 200 (262)
T ss_dssp SCC-CCEEE--CSSCEEECCSSSEEEEECTTTCSE--EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT
T ss_pred CCc-eEEec--CCCEEEEECCCCeEEEEcCCCCeE--EEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC
Confidence 222 23333 345565555567788877654332 21111111 11335567775 67655554468899999999
Q ss_pred CCceEEEeccc------------ccceeEEEEeCCCCEEEEEe
Q 016769 338 KGSALAILKYH------------HATCNAVSFSSDCKLMASAS 368 (383)
Q Consensus 338 ~~~~~~~~~~h------------~~~v~~v~~spd~~~las~s 368 (383)
+++.+..+.-. ..-.+.|||+|+++.|...+
T Consensus 201 tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 201 TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 99988766531 12458999999988555444
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0027 Score=62.53 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=37.9
Q ss_pred EEEECCCCcEEEEEeCC-----------CcEEEEEcCCCceEE--EecccccceeEEEEeCCCCEEEEEeC
Q 016769 312 GTSIRPDSKIAATAGWD-----------RRVRIYNYRKGSALA--ILKYHHATCNAVSFSSDCKLMASASE 369 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~d-----------g~i~iwd~~~~~~~~--~~~~h~~~v~~v~~spd~~~las~s~ 369 (383)
+..+.|+++.++.|+.+ ..+.+||..+.+-.. .+......-.+..+.|||++++.|+.
T Consensus 460 ~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 460 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 44567899999999865 568999997754221 11111112223446799999999985
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0033 Score=53.76 Aligned_cols=170 Identities=10% Similarity=0.045 Sum_probs=100.6
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
+..+.+.++.|+..|+++++.+.++ -+. ..+...+. + . .+. ..+..-.++.+.+||.++. .
T Consensus 67 Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-----------~~FgeGit-~--~--g~~-Ly~ltw~~~~v~V~D~~Tl-~ 127 (268)
T 3nok_A 67 FFESTGHQGTLRQLSLESAQPVWME-RLG-----------NIFAEGLA-S--D--GER-LYQLTWTEGLLFTWSGMPP-Q 127 (268)
T ss_dssp EEEEETTTTEEEECCSSCSSCSEEE-ECT-----------TCCEEEEE-E--C--SSC-EEEEESSSCEEEEEETTTT-E
T ss_pred EEEEcCCCCEEEEEECCCCcEEeEE-CCC-----------CcceeEEE-E--e--CCE-EEEEEccCCEEEEEECCcC-c
Confidence 3444455677999999999976655 211 11111111 1 1 112 2344567899999998873 4
Q ss_pred ceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecC---CCCeEEEEECCCCcEEEEEeCCC
Q 016769 253 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE---RPGISGTSIRPDSKIAATAGWDR 329 (383)
Q Consensus 253 ~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~---~~~i~~~~~~p~~~~l~s~~~dg 329 (383)
.+..+....+. ..++.+ +..++.+..++.|.++|.+.... ......... -..++.+.+. +|+..+..-.+.
T Consensus 128 ~~~ti~~~~eG-wGLt~D--g~~L~vSdGs~~l~~iDp~T~~v--~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~ 201 (268)
T 3nok_A 128 RERTTRYSGEG-WGLCYW--NGKLVRSDGGTMLTFHEPDGFAL--VGAVQVKLRGQPVELINELECA-NGVIYANIWHSS 201 (268)
T ss_dssp EEEEEECSSCC-CCEEEE--TTEEEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred EEEEEeCCCce-eEEecC--CCEEEEECCCCEEEEEcCCCCeE--EEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence 45555543222 344444 45666666678888887654432 211111111 1235666666 776555444588
Q ss_pred cEEEEEcCCCceEEEeccc-------------ccceeEEEEeCCCC-EEEEE
Q 016769 330 RVRIYNYRKGSALAILKYH-------------HATCNAVSFSSDCK-LMASA 367 (383)
Q Consensus 330 ~i~iwd~~~~~~~~~~~~h-------------~~~v~~v~~spd~~-~las~ 367 (383)
.|.+.|..+++.+..+.-. ..-.+.||++|+++ +++||
T Consensus 202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999999988766522 12468999999876 55555
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0061 Score=53.85 Aligned_cols=133 Identities=14% Similarity=0.037 Sum_probs=82.4
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 312 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~ 312 (383)
+..++.++.|..+|.. +. .+.........+..+.++.++. +..++ +.+..+| . ++...... ......+.+
T Consensus 150 l~vgt~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~--~g~~~~~~--~~~~~~~~~ 219 (330)
T 3hxj_A 150 IYVGSNDNYLYAINPD-GT-EKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-P--DGTEKWNF--YAGYWTVTR 219 (330)
T ss_dssp EEEECTTSEEEEECTT-SC-EEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-T--TSCEEEEE--CCSSCCCSC
T ss_pred EEEEcCCCEEEEECCC-CC-EeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-C--CCcEEEEE--ccCCcceec
Confidence 6678888999999977 33 2333333344555666766655 44444 7788887 3 22222222 222345777
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
+.+.+++.. ..++.++.+..+|. +++.+..+......+.++.+.++++ |..++.++.|..+|.
T Consensus 220 ~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 220 PAISEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp CEECTTSCE-EEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred eEECCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 888888764 45677888888874 5666665554444445556665664 556777878888874
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0034 Score=61.99 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=40.6
Q ss_pred CCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 327 WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
.+|.|..||+.+++.+.....+ .......+...+.+++.|+.|+.++.||...
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred ccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence 3588999999999998776533 3344345556778899999999999999753
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.024 Score=47.86 Aligned_cols=163 Identities=12% Similarity=0.102 Sum_probs=95.9
Q ss_pred ceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeecc
Q 016769 181 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 260 (383)
Q Consensus 181 ~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h 260 (383)
+.|+..|+++++.+.++.-+. ..+-..+. .. .+. ..+..-.++.+.++|.++ ...+..+...
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~-----------~~fgeGi~-~~----~~~-ly~ltw~~~~v~v~D~~t-l~~~~ti~~~ 104 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPP-----------PYFGAGIV-AW----RDR-LIQLTWRNHEGFVYDLAT-LTPRARFRYP 104 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCT-----------TCCEEEEE-EE----TTE-EEEEESSSSEEEEEETTT-TEEEEEEECS
T ss_pred ceEEEEECCCCCEEEEEeCCC-----------CcceeEEE-Ee----CCE-EEEEEeeCCEEEEEECCc-CcEEEEEeCC
Confidence 589999999999877664211 11111111 11 112 233456789999999887 3345555543
Q ss_pred ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecC---CCCeEEEEECCCCcEEEEEeCCCcEEEEEcC
Q 016769 261 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE---RPGISGTSIRPDSKIAATAGWDRRVRIYNYR 337 (383)
Q Consensus 261 ~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~---~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~ 337 (383)
.+. ..++. ++..++.+..++.|.++|.+.......+ ..... -..++.+.+. +|+.++..-.+..|.+.|..
T Consensus 105 ~~G-wglt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I--~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~ 178 (243)
T 3mbr_X 105 GEG-WALTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSI--KVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPA 178 (243)
T ss_dssp SCC-CEEEE--CSSCEEEECSSSEEEEECTTTCCEEEEE--ECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTT
T ss_pred CCc-eEEee--CCCEEEEECCCCeEEEEeCCCCeEEEEE--EEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECC
Confidence 332 34444 4455666666778888876644322111 11111 1234555654 66655544458899999999
Q ss_pred CCceEEEeccc------------c-cceeEEEEeCCCCE-EEEE
Q 016769 338 KGSALAILKYH------------H-ATCNAVSFSSDCKL-MASA 367 (383)
Q Consensus 338 ~~~~~~~~~~h------------~-~~v~~v~~spd~~~-las~ 367 (383)
+++.+..+.-. . .-.+.||++|+++. ++||
T Consensus 179 tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 179 SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 99988776521 1 24589999998774 4554
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0012 Score=59.38 Aligned_cols=116 Identities=10% Similarity=0.083 Sum_probs=73.8
Q ss_pred cccCeEEEEEeCCCCceEEEEc-----CCcEEEEEccCCCCeeEEeeeee----cCCCCeEEEEECCCCc-EEEEEe---
Q 016769 260 HLEPVLCLSIDESCNGGISGGA-----DQKIVLYNLDHSTGSCVIKKEIN----LERPGISGTSIRPDSK-IAATAG--- 326 (383)
Q Consensus 260 h~~~v~~~~~~~~~~~~~s~~~-----d~~i~~wdl~~~~~~~~~~~~~~----~~~~~i~~~~~~p~~~-~l~s~~--- 326 (383)
|...+..+.+++++...++-.. ++.|.+||++... ........ ......+.++++|++. .+++..
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD 142 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence 4457788999888653333222 5789999986432 21111111 1123468899998654 445544
Q ss_pred CCCcEEEEEcCCCceEEEecccc-----------------------------cceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 327 WDRRVRIYNYRKGSALAILKYHH-----------------------------ATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~~~~~~~h~-----------------------------~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
.++.|.+||+.+++....+.+|. ..++.++|+|||+.|..+..++. ++|.
T Consensus 143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~ 221 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYR 221 (343)
T ss_dssp GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEE
T ss_pred CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEE
Confidence 68899999998887665554431 13588999999998887776663 4554
Q ss_pred C
Q 016769 378 L 378 (383)
Q Consensus 378 ~ 378 (383)
+
T Consensus 222 ~ 222 (343)
T 2qe8_A 222 I 222 (343)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.047 Score=46.71 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=87.9
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEE-EcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~-~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
.++...++.|..+|+.... ....+.........+++++.+..++.+ ...+.|.+++++....... .........
T Consensus 51 y~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~----~~~~~~~P~ 125 (267)
T 1npe_A 51 YWTDISEPSIGRASLHGGE-PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL----FDTGLVNPR 125 (267)
T ss_dssp EEEETTTTEEEEEESSSCC-CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----ECSSCSSEE
T ss_pred EEEECCCCEEEEEecCCCC-cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE----EECCCCCcc
Confidence 4455667889999986532 222222223456789999876555544 4567899998874332211 111224678
Q ss_pred EEEECCCCcEEEEEeC---CCcEEEEEcCCCceEEEe-cccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 312 GTSIRPDSKIAATAGW---DRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~---dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
.++++|++..|..+.. .++|..++++... ...+ .........++++|+++ ++++-...+.|..+|+.
T Consensus 126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~ 197 (267)
T 1npe_A 126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (267)
T ss_dssp EEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence 9999996555444443 3689888886432 2222 22334678899999876 55666677889988874
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0045 Score=59.16 Aligned_cols=128 Identities=10% Similarity=0.051 Sum_probs=81.1
Q ss_pred CcEEEEeCCC--CCCceeeeeccccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCC----e----eEEeeeeecCCC
Q 016769 240 GSILVWDIRN--PGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTG----S----CVIKKEINLERP 308 (383)
Q Consensus 240 g~i~~wdl~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~----~----~~~~~~~~~~~~ 308 (383)
+.|.+.|.++ ....+..+.... ...++.++|++++++.++ .+.+|.++|++.... . .....+.. -..
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~ 331 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGL 331 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCS
T ss_pred CcEEEEeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCC
Confidence 4588899876 332233443322 335788999999876554 678899999874210 0 00111222 124
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCC----------CceEEEecccccc-----eeEEEEeCCCCEEEEEeC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRK----------GSALAILKYHHAT-----CNAVSFSSDCKLMASASE 369 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~h~~~-----v~~v~~spd~~~las~s~ 369 (383)
+...++|+|+|...++.-.|+.|..||+++ .+.+..+.-|-.+ -..+.++|||++|.++..
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 688999999996556666899999999976 4455555444332 122346899999888644
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.017 Score=51.17 Aligned_cols=144 Identities=10% Similarity=0.060 Sum_probs=86.1
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeec--------------------cccCeEEEEEeCCCCceEEEEcCCcEEEEEccC
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKV--------------------HLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 292 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~--------------------h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~ 292 (383)
+.++..++.|..||..... +..+.. .......+.+++....++.+...+.+..+|.+.
T Consensus 33 l~v~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~ 110 (322)
T 2fp8_A 33 FYTSVQDGRVIKYEGPNSG--FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEG 110 (322)
T ss_dssp EEEECTTSEEEEECCTTTC--EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTC
T ss_pred EEEEcCCCeEEEECCCCCc--eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCC
Confidence 4566678888888876432 222110 112467888987334566666666687777543
Q ss_pred CCCeeEEeeeeecCCCCeEEEEECC-CCcEEEEEeC-----------------CCcEEEEEcCCCceEEEecccccceeE
Q 016769 293 STGSCVIKKEINLERPGISGTSIRP-DSKIAATAGW-----------------DRRVRIYNYRKGSALAILKYHHATCNA 354 (383)
Q Consensus 293 ~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~h~~~v~~ 354 (383)
..................+.+++.| +|++.++... ++.|..||..+++...... .....+.
T Consensus 111 g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~g 189 (322)
T 2fp8_A 111 GHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGG 189 (322)
T ss_dssp EECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCE
T ss_pred CEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-CCccCcc
Confidence 2111111100001113478899999 9987665432 3678888987665432222 2234577
Q ss_pred EEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 355 VSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 355 v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
++|+|||+ ++++-+.++.|..|++.
T Consensus 190 ia~~~dg~~lyv~d~~~~~I~~~~~~ 215 (322)
T 2fp8_A 190 AEVSADSSFVLVAEFLSHQIVKYWLE 215 (322)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred eEECCCCCEEEEEeCCCCeEEEEECC
Confidence 89999998 45555677889999875
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.039 Score=52.73 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=53.2
Q ss_pred CeEEEEECCCCcEEEEEe-CCCcEEEEEcCCCc------------eEEEecccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 016769 309 GISGTSIRPDSKIAATAG-WDRRVRIYNYRKGS------------ALAILKYHHATCNAVSFSSDCKLMASASEDSTVAL 375 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~------------~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~ 375 (383)
...++.++|||+++++++ .+.+|.++|+.+.+ ....+. -......++|+|||...++.-.|+.|.+
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~k 356 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVK 356 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEE
Confidence 456799999999766655 78899999998653 233332 2234688999999976778889999999
Q ss_pred EeCC
Q 016769 376 WELY 379 (383)
Q Consensus 376 w~~~ 379 (383)
||+.
T Consensus 357 wdi~ 360 (595)
T 1fwx_A 357 WNIE 360 (595)
T ss_dssp EEHH
T ss_pred EEhh
Confidence 9973
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.11 Score=45.75 Aligned_cols=110 Identities=11% Similarity=0.067 Sum_probs=72.0
Q ss_pred eEEEEEeCCCCceEEE-EcCCcEEEEEccCCC-CeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC----------CCcE
Q 016769 264 VLCLSIDESCNGGISG-GADQKIVLYNLDHST-GSCVIKKEINLERPGISGTSIRPDSKIAATAGW----------DRRV 331 (383)
Q Consensus 264 v~~~~~~~~~~~~~s~-~~d~~i~~wdl~~~~-~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~----------dg~i 331 (383)
...+++++++..++.+ ...+.|.+++++... +..... .. ..+ ...+++.++|++.++... .+.|
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~--~~-~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v 262 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL--VK-IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKG 262 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE--EE-CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE--Ee-CCC-CCCeEECCCCCEEEEecCcccccccCCCccEE
Confidence 4568899988766555 456889999987421 111111 11 112 788999999987666544 4678
Q ss_pred EEEEcCCCceEEEeccc----ccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 332 RIYNYRKGSALAILKYH----HATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 332 ~iwd~~~~~~~~~~~~h----~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
..+|. .++.+..+... ...+.++++ .+++++++...++.|..+++.
T Consensus 263 ~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 263 IKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred EEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 88887 47666655432 235677777 477777777788899999874
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.19 Score=48.36 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 328 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 328 dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
++.|..||+.+++.+..+.. ...+.+..+...+..+..++.|+.++.||...
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKD 494 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred CCeEEEEECCCCCEEEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCC
Confidence 57899999999998877652 22333333344566777799999999999754
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.28 Score=47.35 Aligned_cols=83 Identities=8% Similarity=0.118 Sum_probs=48.1
Q ss_pred CCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccce-eEEEEeCC
Q 016769 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC-NAVSFSSD 360 (383)
Q Consensus 282 d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~v~~spd 360 (383)
++.|.-||+.+. +...+...... ...-.+...+..++.++.|+.++.||.++++.+..++....-. .-+.+..|
T Consensus 465 ~G~l~A~D~~tG--~~~W~~~~~~~---~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~ 539 (582)
T 1flg_A 465 VGSLRAMDPVSG--KVVWEHKEHLP---LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQD 539 (582)
T ss_dssp SEEEEEECTTTC--CEEEEEEESSC---CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred cceEEEEECCCC--CEEEEecCCCC---CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEEC
Confidence 466777777643 33333222111 1111111134567779999999999999999998776432211 12556778
Q ss_pred CC-EEEEEeC
Q 016769 361 CK-LMASASE 369 (383)
Q Consensus 361 ~~-~las~s~ 369 (383)
|+ ++++.+.
T Consensus 540 G~qYv~~~~G 549 (582)
T 1flg_A 540 GEQYLGVTVG 549 (582)
T ss_dssp TEEEEEEEEC
T ss_pred CEEEEEEEcc
Confidence 88 5554443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.29 Score=47.07 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=47.3
Q ss_pred CCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEeccccc-ceeEEEEeCC
Q 016769 282 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA-TCNAVSFSSD 360 (383)
Q Consensus 282 d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~v~~spd 360 (383)
++.+..||+.+. +...+..... .+.+..+...+..++.++.|+.++.||..+++.+..++.... .-.-+.+.++
T Consensus 443 ~g~l~a~D~~tG--~~~W~~~~~~---~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~ 517 (571)
T 2ad6_A 443 MGQIRAFDLTTG--KAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFK 517 (571)
T ss_dssp CEEEEEECTTTC--CEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred CCeEEEEECCCC--CEEEEecCCC---CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEEC
Confidence 466777777643 3333322211 111112222345666689999999999999999987753221 1122345678
Q ss_pred CC-EEEEEeCC
Q 016769 361 CK-LMASASED 370 (383)
Q Consensus 361 ~~-~las~s~d 370 (383)
|+ ++++.+..
T Consensus 518 G~~yv~~~~G~ 528 (571)
T 2ad6_A 518 GKQYIGSMYGV 528 (571)
T ss_dssp TEEEEEEEECC
T ss_pred CEEEEEEECCC
Confidence 87 44444433
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.32 Score=47.10 Aligned_cols=51 Identities=10% Similarity=0.090 Sum_probs=34.8
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCceEEEecccccc-eeEEEEeCCCC-EEEEEe
Q 016769 318 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT-CNAVSFSSDCK-LMASAS 368 (383)
Q Consensus 318 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~v~~spd~~-~las~s 368 (383)
.+..+..++.|+.++.||.++++.+..++-.... ..-+.+..||+ ++++.+
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 3456667899999999999999999877532211 12244567887 555544
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.1 Score=44.51 Aligned_cols=136 Identities=6% Similarity=-0.104 Sum_probs=85.2
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccC-eEEEEEeCCCCceEE-EEcCCcEEEEEccCCCCeeEEeeeeecCCCC
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP-VLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINLERPG 309 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~s-~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~ 309 (383)
..++.+.+|.|+.+|+++... +..+ ..... ...++++. +.++. .-.++.+.+||.++.... ..+.....
T Consensus 67 Ly~stG~~g~v~~iD~~Tgkv-~~~~-l~~~~FgeGit~~g--~~Ly~ltw~~~~v~V~D~~Tl~~~----~ti~~~~e- 137 (268)
T 3nok_A 67 FFESTGHQGTLRQLSLESAQP-VWME-RLGNIFAEGLASDG--ERLYQLTWTEGLLFTWSGMPPQRE----RTTRYSGE- 137 (268)
T ss_dssp EEEEETTTTEEEECCSSCSSC-SEEE-ECTTCCEEEEEECS--SCEEEEESSSCEEEEEETTTTEEE----EEEECSSC-
T ss_pred EEEEcCCCCEEEEEECCCCcE-EeEE-CCCCcceeEEEEeC--CEEEEEEccCCEEEEEECCcCcEE----EEEeCCCc-
Confidence 456778888999999998654 3333 22211 12355554 34433 345788999998754322 22222211
Q ss_pred eEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecc--cc---cceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY--HH---ATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~---~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
-.+ +.+|++.|+.+..+++|.++|..+.+.+.++.- +. ..++.+.|. +|+..|....+..|.+-|..
T Consensus 138 GwG--Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~ 209 (268)
T 3nok_A 138 GWG--LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA 209 (268)
T ss_dssp CCC--EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred eeE--EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence 122 335777777777799999999999888776542 22 245677877 88877777677788777753
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.19 Score=43.94 Aligned_cols=97 Identities=11% Similarity=0.029 Sum_probs=58.3
Q ss_pred eCCCCceEEE-EcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEE--Eec
Q 016769 270 DESCNGGISG-GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA--ILK 346 (383)
Q Consensus 270 ~~~~~~~~s~-~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~ 346 (383)
++++..++.+ ...++|.+++++.. +......... .......+++.++|+++++....++|.+||.. ++... .+.
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~-g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~ 251 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDST-DKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE 251 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTT-SCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCC-CCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc
Confidence 3444444443 45677888888641 1110000010 11245678999999988877778899999975 65432 233
Q ss_pred ccccceeEEEEe---CCCCEEEEEeC
Q 016769 347 YHHATCNAVSFS---SDCKLMASASE 369 (383)
Q Consensus 347 ~h~~~v~~v~~s---pd~~~las~s~ 369 (383)
.......+++|. ||++.|..++.
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred cccCCceEEEEecccCCCCEEEEECC
Confidence 233568999998 89875554443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.077 Score=49.17 Aligned_cols=141 Identities=8% Similarity=0.070 Sum_probs=85.2
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcC-C----cEEEEEccCCCCeeEEeeeeecCC
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD-Q----KIVLYNLDHSTGSCVIKKEINLER 307 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d-~----~i~~wdl~~~~~~~~~~~~~~~~~ 307 (383)
|......+.|+.+|+.... +..+.........++++++++.++.+... + .+...+.+. ..... ..+. ..
T Consensus 152 Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~~~~--~~l~-~~ 225 (430)
T 3tc9_A 152 LYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GFKVI--TELT-KG 225 (430)
T ss_dssp EEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TSCSE--EEEE-EC
T ss_pred EEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-ceeee--eeec-cC
Confidence 4343333788899987532 23333334457789999998866655542 1 223333221 11100 0111 12
Q ss_pred CCeEEEEECC-CCcEEEEEeCCCcEEEEEcCCCceEEEec-ccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 308 PGISGTSIRP-DSKIAATAGWDRRVRIYNYRKGSALAILK-YHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 308 ~~i~~~~~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
....+++++| ++.++++-..+++|+.|+...+....... +-......++|+|+|+ ++++-...+.|..++..
T Consensus 226 ~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 226 QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 3467889999 77777766678899999998765422111 1123467899999999 66777788889888753
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.2 Score=44.08 Aligned_cols=142 Identities=7% Similarity=-0.005 Sum_probs=84.1
Q ss_pred EEEEeCCCcEEEEeCCCC---CCceeeeeccccCeEEEEEeCCCCceEE-EEcCCcEEEEEccCCCCeeEEeeeeecCCC
Q 016769 233 VLAGYEDGSILVWDIRNP---GIPLTAMKVHLEPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~s-~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
.++-..++.|..+|+... ......+.........++++..+..++. -...+.|.+.+++....... ......
T Consensus 45 y~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~----~~~~~~ 120 (316)
T 1ijq_A 45 YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL----FRENGS 120 (316)
T ss_dssp EEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE----EECTTC
T ss_pred EEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEE----EECCCC
Confidence 445566788888887641 1111222222234568888865555544 34577899998864321111 122234
Q ss_pred CeEEEEECCCCcEEEEEeCC--CcEEEEEcCCCceEEEe-cccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 309 GISGTSIRPDSKIAATAGWD--RRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~d--g~i~iwd~~~~~~~~~~-~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
....+++.|.+..|..+.+. ++|..++++- .....+ ...-...+.++|+|+++ ++++-+..+.|..+|+.
T Consensus 121 ~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 67899999876655444543 6888888853 333323 22345678999998766 45556667788888873
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.14 Score=46.01 Aligned_cols=140 Identities=13% Similarity=0.096 Sum_probs=81.3
Q ss_pred CCCcEEEEeCCCCCCceeeee--c-----cccCeEEEEEeC--CCC-ceEEEEc---CCcEEEEEccCCCCeeEEeeeee
Q 016769 238 EDGSILVWDIRNPGIPLTAMK--V-----HLEPVLCLSIDE--SCN-GGISGGA---DQKIVLYNLDHSTGSCVIKKEIN 304 (383)
Q Consensus 238 ~dg~i~~wdl~~~~~~~~~~~--~-----h~~~v~~~~~~~--~~~-~~~s~~~---d~~i~~wdl~~~~~~~~~~~~~~ 304 (383)
.+|.|.++|+.++......+. + ..-....+.+.. ++. .++.+.. +.+|.+|+++..+....+.....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999874321122222 1 112345566533 333 3444432 46788998886655443333332
Q ss_pred -cCCCCeEEEEECCCCcEEEEEeC-----------------CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCE-EE
Q 016769 305 -LERPGISGTSIRPDSKIAATAGW-----------------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKL-MA 365 (383)
Q Consensus 305 -~~~~~i~~~~~~p~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~-la 365 (383)
..-...+.+.+.++|++.++..- .|.|..+|. ++ ...+...-...+.++||||++. ++
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 22346889999999988776541 134444443 33 2222223345799999999984 45
Q ss_pred EEeCCCcEEEEeCCC
Q 016769 366 SASEDSTVALWELYP 380 (383)
Q Consensus 366 s~s~d~~i~~w~~~~ 380 (383)
+-+..+.|..|++.+
T Consensus 238 adt~~~~I~~~~~~~ 252 (355)
T 3sre_A 238 AELLAHKIHVYEKHA 252 (355)
T ss_dssp EEGGGTEEEEEEECT
T ss_pred EeCCCCeEEEEEECC
Confidence 566788999998853
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.1 Score=46.08 Aligned_cols=148 Identities=10% Similarity=0.095 Sum_probs=89.1
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeec----cc--cCeEEEEE---eCCCCceEEEE-------------cCCcEEEEEc
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKV----HL--EPVLCLSI---DESCNGGISGG-------------ADQKIVLYNL 290 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~----h~--~~v~~~~~---~~~~~~~~s~~-------------~d~~i~~wdl 290 (383)
.++.-..++|..||..........+.. .. ..+..+.+ |+.+..+++.. .+..+..+|+
T Consensus 28 ~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl 107 (334)
T 2p9w_A 28 YQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNL 107 (334)
T ss_dssp EEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEES
T ss_pred EEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcC
Confidence 344457889999987643211111211 11 12468888 68754444333 2577889998
Q ss_pred c---CCCCeeEEeee--eec-------CCCCeEEEEECCCCcEEEEEeCC-CcEEEEEcCCCceEEEecc------cccc
Q 016769 291 D---HSTGSCVIKKE--INL-------ERPGISGTSIRPDSKIAATAGWD-RRVRIYNYRKGSALAILKY------HHAT 351 (383)
Q Consensus 291 ~---~~~~~~~~~~~--~~~-------~~~~i~~~~~~p~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~------h~~~ 351 (383)
. +.......... ... .....+.+++.++|+..++++.- +.|..++.+-. .+..+.- ..--
T Consensus 108 ~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G 186 (334)
T 2p9w_A 108 PLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPG 186 (334)
T ss_dssp SCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCS
T ss_pred CcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccC
Confidence 7 33322221110 000 11358899999999998988888 88777776533 3333211 1112
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 352 CNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 352 v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
.+.++++|||+.|+....++.+.-+|+..|
T Consensus 187 ~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 187 YSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp CSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred cceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 568999999997777766999999997543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.37 Score=42.91 Aligned_cols=188 Identities=12% Similarity=0.195 Sum_probs=105.9
Q ss_pred CCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEe-ecCCCCCCceE-EEEEeC--CCcEEEEeCCCCCCc
Q 016769 178 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA-YLPSKSQGFVN-VLAGYE--DGSILVWDIRNPGIP 253 (383)
Q Consensus 178 ~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~sg~~--dg~i~~wdl~~~~~~ 253 (383)
...+-+.++|+ +++.+..+.. ++.....+.. |.... ..... +++.-. +++|.+|++.-....
T Consensus 47 ~k~~gL~Vydl-~G~~l~~~~~------------g~~nnVD~r~~~~l~g-~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 47 NKKSGLVVYSL-DGKMLHSYNT------------GKLNNVDIRYDFPLNG-KKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp ETTTEEEEEET-TSCEEEEECC------------SCEEEEEEEEEEEETT-EEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred cCCCCEEEEcC-CCcEEEEccC------------CCcccEEEecccccCC-ceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 33467999999 8887777642 1111111111 10000 00001 333444 678999977321222
Q ss_pred eeeeec-------cccCeEEEEE--eCCCC--ceEEEEcCCcEEEEEccCC-CC--eeEEeeeeecCCCCeEEEEECCCC
Q 016769 254 LTAMKV-------HLEPVLCLSI--DESCN--GGISGGADQKIVLYNLDHS-TG--SCVIKKEINLERPGISGTSIRPDS 319 (383)
Q Consensus 254 ~~~~~~-------h~~~v~~~~~--~~~~~--~~~s~~~d~~i~~wdl~~~-~~--~~~~~~~~~~~~~~i~~~~~~p~~ 319 (383)
+..+.. ....+..+++ ++... +++....++.+..|++... .+ ...+...+... +.+-.+.+.+..
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~ 191 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEY 191 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTT
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCC
Confidence 433311 0022333444 66433 4677888999999998532 22 12222233332 467788888888
Q ss_pred cEEEEEeCCCcEEEEEcC-----CCceEEEec-ccc-cceeEEEE--eCCCC-EEEEEe-CCCcEEEEeCCC
Q 016769 320 KIAATAGWDRRVRIYNYR-----KGSALAILK-YHH-ATCNAVSF--SSDCK-LMASAS-EDSTVALWELYP 380 (383)
Q Consensus 320 ~~l~s~~~dg~i~iwd~~-----~~~~~~~~~-~h~-~~v~~v~~--spd~~-~las~s-~d~~i~~w~~~~ 380 (383)
.+|..+-.|.-|..++.+ +++.+..+. +|. ..+..+++ .++++ +|+.++ .+....+||...
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 889989998777666754 344555542 333 36888887 56666 555544 677999999853
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.11 Score=44.50 Aligned_cols=131 Identities=8% Similarity=-0.040 Sum_probs=82.0
Q ss_pred CCcEEEEeCCCCCCceeeeecccc-CeEEEEEeCCCCceEEE-EcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEEC
Q 016769 239 DGSILVWDIRNPGIPLTAMKVHLE-PVLCLSIDESCNGGISG-GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 316 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~s~-~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (383)
++.|.++|+.+.. .+..+..... -...++++. ..++.. -.++.+.++|.+... ... .+...... ...++
T Consensus 43 ~s~v~~iD~~tg~-v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~--v~~--~i~~g~~~--g~glt 113 (266)
T 2iwa_A 43 RSSVRQVALQTGK-VENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLS--NIK--NFTHQMKD--GWGLA 113 (266)
T ss_dssp TCEEEEEETTTCC-EEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTE--EEE--EEECCSSS--CCEEE
T ss_pred CCEEEEEECCCCC-EEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCc--EEE--EEECCCCC--eEEEE
Confidence 6899999998854 3444332111 123455553 445444 457889999986432 222 22222111 23355
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCceEEEecc--cc---cceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 317 PDSKIAATAGWDRRVRIYNYRKGSALAILKY--HH---ATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 317 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~---~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+|++.++.+..+++|.++|..+.+....+.- +. ..++.+.|. +|+..+....++.|.+-|..
T Consensus 114 ~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~ 180 (266)
T 2iwa_A 114 TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAK 180 (266)
T ss_dssp ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETT
T ss_pred ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECC
Confidence 6777666666789999999999887776542 11 246788888 78777777778888888874
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.12 Score=43.94 Aligned_cols=137 Identities=10% Similarity=0.058 Sum_probs=82.7
Q ss_pred EEEEEeCCC--cEEEEeCCCCCCceeeeeccccCe-EEEEEeCCCCceEEEE-cCCcEEEEEccCCCCeeEEeeeeecCC
Q 016769 232 NVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPV-LCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLER 307 (383)
Q Consensus 232 ~~~sg~~dg--~i~~wdl~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~~~~~~ 307 (383)
...+.+.+| .|+.+|+++... +..+....... ..++++. +.+.... .++.+.+||.++..... .+....
T Consensus 55 LyestG~~g~S~v~~vD~~Tgkv-~~~~~l~~~~FgeGit~~g--~~ly~ltw~~~~v~v~D~~t~~~~~----ti~~~~ 127 (262)
T 3nol_A 55 FYESTGLNGRSSIRKVDIESGKT-LQQIELGKRYFGEGISDWK--DKIVGLTWKNGLGFVWNIRNLRQVR----SFNYDG 127 (262)
T ss_dssp EEEEEEETTEEEEEEECTTTCCE-EEEEECCTTCCEEEEEEET--TEEEEEESSSSEEEEEETTTCCEEE----EEECSS
T ss_pred EEEECCCCCCceEEEEECCCCcE-EEEEecCCccceeEEEEeC--CEEEEEEeeCCEEEEEECccCcEEE----EEECCC
Confidence 345556655 899999998543 44443322221 2345543 4444443 57889999987544222 222221
Q ss_pred CCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecc----cc-cceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 308 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY----HH-ATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 308 ~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----h~-~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
.+..+.+|++.++.+..+++|.++|..+.+.+.++.- .. ..++.+.|. +|+..|..-.+..|.+.|..
T Consensus 128 ---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~ 200 (262)
T 3nol_A 128 ---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE 200 (262)
T ss_dssp ---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT
T ss_pred ---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC
Confidence 1122335676666666678899999999888776542 12 345667886 78877777677788777653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.27 Score=44.65 Aligned_cols=142 Identities=12% Similarity=0.076 Sum_probs=85.0
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEE-EEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s-~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
.++-...+.|..+++.... ....+.........+++++....++. -...+.|.+.+++....... .........
T Consensus 131 y~~D~~~~~I~r~~~~g~~-~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l----~~~~l~~P~ 205 (386)
T 3v65_B 131 FWSDVTLDRILRANLNGSN-VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL----LWQSLEKPR 205 (386)
T ss_dssp EEEETTTTEEEEEETTSCC-EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE----ECSSCSCEE
T ss_pred EEEeCCCCcEEEEecCCCC-cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe----ecCCCCCCc
Confidence 4455567788888876532 12222222234456888875555544 44467788888764332221 112234678
Q ss_pred EEEECCCCcEEEEEeC-C-CcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 312 GTSIRPDSKIAATAGW-D-RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
++++.|.+.+|..+.+ + ++|..++++...............+.++|+|+++ ++++=+..+.|..+|+.
T Consensus 206 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 206 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred EEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 9999987665544443 4 6888888864433333333344578999998665 55666667788888863
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.31 Score=43.58 Aligned_cols=142 Identities=11% Similarity=0.044 Sum_probs=85.5
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceE-EEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
.++-...+.|..+++.... ....+.........++++.....++ +-...+.|.+.+++....... .........
T Consensus 88 y~~D~~~~~I~r~~~~g~~-~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l----~~~~l~~P~ 162 (349)
T 3v64_C 88 FWSDVTLDRILRANLNGSN-VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL----LWQSLEKPR 162 (349)
T ss_dssp EEEETTTTEEEEEETTSCS-CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----ECTTCSCEE
T ss_pred EEEeccCCceEEEecCCCC-ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE----EeCCCCCcc
Confidence 3455567788888876532 1222222233456788887555554 444567899998875432221 112234578
Q ss_pred EEEECCCCcEEEEEe-CC-CcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 312 GTSIRPDSKIAATAG-WD-RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
++++.|.+..|.-+. .+ ++|..++++...........-...+.++|+|+++ +.++=+..+.|..+|+.
T Consensus 163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 999998665544444 44 7898888864433322222344578999998665 55666667788888864
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.26 E-value=0.51 Score=41.60 Aligned_cols=143 Identities=13% Similarity=0.050 Sum_probs=85.9
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceE-EEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
..+-...+.|..+++.........+.........++++.....++ +-...+.|.+++++........ ........
T Consensus 50 yw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~----~~~~~~P~ 125 (318)
T 3sov_A 50 YWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF----WQELDQPR 125 (318)
T ss_dssp EEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----CSSCSSEE
T ss_pred EEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEE----eCCCCCcc
Confidence 345556677888887653211122222233456788887555554 4445678999988753322221 12334678
Q ss_pred EEEECCCCcEEEEEeC--CCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 312 GTSIRPDSKIAATAGW--DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
++++.|.+.+|.-+.+ .+.|..++++-..........-...+.++|+|+++ +..+=+..+.|..+|+.
T Consensus 126 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 126 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp EEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 9999987665555553 57888888863332222222334578999999665 55666677888888874
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.08 E-value=0.83 Score=41.68 Aligned_cols=143 Identities=6% Similarity=-0.027 Sum_probs=84.9
Q ss_pred EEEEeCCCcEEEEeCCCCC---CceeeeeccccCeEEEEEeCCCCceEEE-EcCCcEEEEEccCCCCeeEEeeeeecCCC
Q 016769 233 VLAGYEDGSILVWDIRNPG---IPLTAMKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~s~-~~d~~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
..+-...+.|..+++.... .....+.........++++.....++.. ...+.|.+.+++......+ ......
T Consensus 127 ywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l----~~~~~~ 202 (400)
T 3p5b_L 127 YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL----FRENGS 202 (400)
T ss_dssp EEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE----EECSSC
T ss_pred EEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEE----EeCCCC
Confidence 3455566778888875411 1122222233456788898755555444 4567888888764332221 122234
Q ss_pred CeEEEEECCCCcEEEEEeC--CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCE-EEEEeCCCcEEEEeCC
Q 016769 309 GISGTSIRPDSKIAATAGW--DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKL-MASASEDSTVALWELY 379 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~-las~s~d~~i~~w~~~ 379 (383)
...++++.|.+.+|.-+.+ .+.|...+++-..........-...+.|+|+|+++. ..+=+..+.|..+|+.
T Consensus 203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 5789999997665555543 378999998654433333333456789999987764 4555566788888763
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.18 Score=46.74 Aligned_cols=133 Identities=8% Similarity=0.029 Sum_probs=79.7
Q ss_pred CcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCC----c-EEEEEccCCCCeeEEeeeeecCCCCeEEEE
Q 016769 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ----K-IVLYNLDHSTGSCVIKKEINLERPGISGTS 314 (383)
Q Consensus 240 g~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~----~-i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~ 314 (383)
+.|+.+|+.+.. +..+.........+++++++. ++.+...+ . +...+.... .... .... .......++
T Consensus 162 ~~I~~id~~~g~--v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~-~~~~--~~~~-~~~~P~gia 234 (433)
T 4hw6_A 162 DAFRHVDFVNQY--VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG-FTER--LSLC-NARGAKTCA 234 (433)
T ss_dssp SCEEEEETTTTE--EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT-TCCE--EEEE-ECSSBCCCE
T ss_pred CCEEEEECCCCE--EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC-eecc--cccc-ccCCCCEEE
Confidence 789999986532 223333344578899999988 55544322 1 222222111 0000 0111 123467789
Q ss_pred ECC-CCcEEEEEeCCCcEEEEEcCCCceEEEecc--cccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 315 IRP-DSKIAATAGWDRRVRIYNYRKGSALAILKY--HHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 315 ~~p-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
++| ++.++++-..+++|+.+|..++.....+.. .......++|+|+++ ++++-...+.|..+++.
T Consensus 235 vd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 235 VHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp ECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred EeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 999 777766666788999999987765222211 122234699999998 66777778889988764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.3 Score=48.06 Aligned_cols=187 Identities=11% Similarity=0.060 Sum_probs=102.7
Q ss_pred CCcceEEEEecCCCCeeeEeccCcCCCCC-CcC--CCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCce
Q 016769 178 EQLSEVEIWDLNTAERCTRLHQNSCGGSP-NFS--SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 254 (383)
Q Consensus 178 ~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~ 254 (383)
+.++.|..+|.++++.+-+.......... ... ....+. ++. . ..++.++.|+.|..+|.+++.. +
T Consensus 73 ~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~--~~v~v~~~dg~l~alD~~tG~~-~ 140 (668)
T 1kv9_A 73 MSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGV--ALW-------G--DKVYVGTLDGRLIALDAKTGKA-I 140 (668)
T ss_dssp EGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCC--EEE-------B--TEEEEECTTSEEEEEETTTCCE-E
T ss_pred CCCCeEEEEECCCChhceEECCCCCccccccccccCCccce--EEE-------C--CEEEEEcCCCEEEEEECCCCCE-e
Confidence 34678999999999987666422100000 000 000000 110 1 1477788899999999887543 2
Q ss_pred eeeecc-c---cCeEE-EEEeCCCCceEEEEc------CCcEEEEEccCCCCeeEEeeeeecC-----------------
Q 016769 255 TAMKVH-L---EPVLC-LSIDESCNGGISGGA------DQKIVLYNLDHSTGSCVIKKEINLE----------------- 306 (383)
Q Consensus 255 ~~~~~h-~---~~v~~-~~~~~~~~~~~s~~~------d~~i~~wdl~~~~~~~~~~~~~~~~----------------- 306 (383)
=..+.. . ..+.. ..+. ...++.+.. ++.|..+|.++. ...........
T Consensus 141 W~~~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG--~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 216 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTG--KLAWRFYTVPGDPALPYEHPELREAAKT 216 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTC--CEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred eeeccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCC--cEEEEecccCCCCCcccccccccccccc
Confidence 111110 0 00000 0111 123344432 577888887644 33332221000
Q ss_pred ------------CCCeEEEEECCCCcEEEEEeCCCc-------------------EEEEEcCCCceEEEecc--cc----
Q 016769 307 ------------RPGISGTSIRPDSKIAATAGWDRR-------------------VRIYNYRKGSALAILKY--HH---- 349 (383)
Q Consensus 307 ------------~~~i~~~~~~p~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~--h~---- 349 (383)
......+++.|+...+..++.++. |..+|.++++.+..++. |.
T Consensus 217 ~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~ 296 (668)
T 1kv9_A 217 WQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF 296 (668)
T ss_dssp CCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred CCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc
Confidence 001124678888888888877764 99999999999887764 32
Q ss_pred ---cceeEEEEeCCCC---EEEEEeCCCcEEEEeCCC
Q 016769 350 ---ATCNAVSFSSDCK---LMASASEDSTVALWELYP 380 (383)
Q Consensus 350 ---~~v~~v~~spd~~---~las~s~d~~i~~w~~~~ 380 (383)
.+.....+..||+ .++.++.+|.++++|...
T Consensus 297 ~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t 333 (668)
T 1kv9_A 297 TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN 333 (668)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC
Confidence 2233333444775 688999999999998753
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.2 Score=49.96 Aligned_cols=135 Identities=12% Similarity=-0.007 Sum_probs=74.3
Q ss_pred cEEEEeCCCC-CCceeeeeccccCeEEEEEeCCCCceEEEEcC-----CcEEEEEccCCCCeeEEeeeeecCCCCeEEEE
Q 016769 241 SILVWDIRNP-GIPLTAMKVHLEPVLCLSIDESCNGGISGGAD-----QKIVLYNLDHSTGSCVIKKEINLERPGISGTS 314 (383)
Q Consensus 241 ~i~~wdl~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d-----~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~ 314 (383)
+|+++|+.++ ......+.. ....+.|+++++.++....| ..|.++++........+.... ........+.
T Consensus 202 ~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~ 277 (751)
T 2xe4_A 202 TIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE-HNPLFSAFMY 277 (751)
T ss_dssp EEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC-CCTTCEEEEE
T ss_pred EEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEec-CCCceEEEEE
Confidence 5999999875 321111211 12357789998877766655 246677776543211111111 1112356788
Q ss_pred ECCCCcEEEEEeC---CCcEEEEEcCCCc-eE--EEe-cccccceeEEEEeCCCCEEEEEeCC--C--cEEEEeCC
Q 016769 315 IRPDSKIAATAGW---DRRVRIYNYRKGS-AL--AIL-KYHHATCNAVSFSSDCKLMASASED--S--TVALWELY 379 (383)
Q Consensus 315 ~~p~~~~l~s~~~---dg~i~iwd~~~~~-~~--~~~-~~h~~~v~~v~~spd~~~las~s~d--~--~i~~w~~~ 379 (383)
++||+++|+..+. ...|+++|+.++. .. ..+ ........++.|+.++.+++....+ + .|..+++.
T Consensus 278 ~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 278 KAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp ECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence 9999998887663 3468888987752 12 333 3344455566665444445555544 3 44445543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=1.3 Score=42.89 Aligned_cols=53 Identities=9% Similarity=-0.031 Sum_probs=36.4
Q ss_pred CCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 327 WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 327 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
.+|.+..||+.+++.+.... +..+...-.+...+..++.++.|+.++.||...
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~t 503 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDT 503 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred CcCeEEEEECCCCCEEeEec-CCCCccCcceEecCCEEEEECCCCeEEEEECCC
Confidence 35789999999999887664 222222112233566777799999999998754
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.066 Score=53.50 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=70.0
Q ss_pred CeEEEEEe-CCCCceEEE-EcCC----cEEEEEccCC-CCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC-----Cc
Q 016769 263 PVLCLSID-ESCNGGISG-GADQ----KIVLYNLDHS-TGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD-----RR 330 (383)
Q Consensus 263 ~v~~~~~~-~~~~~~~s~-~~d~----~i~~wdl~~~-~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d-----g~ 330 (383)
.+....++ |++..++-. ..+| .|+++|++.. .. +...+. ....+++|+||++.|+-...| ..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~---l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT---IADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC---CCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe---CCcccc---CceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 46678889 999876533 2222 4889998764 31 111111 113467899999887777765 25
Q ss_pred EEEEEcCCCce--EEEec-ccccceeEEEEeCCCCEEEEEeC---CCcEEEEeCCCC
Q 016769 331 VRIYNYRKGSA--LAILK-YHHATCNAVSFSSDCKLMASASE---DSTVALWELYPP 381 (383)
Q Consensus 331 i~iwd~~~~~~--~~~~~-~h~~~v~~v~~spd~~~las~s~---d~~i~~w~~~~~ 381 (383)
|+++++.++.. ...+. ........+.|||||++|+..+. ...|.++|+..+
T Consensus 249 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 249 VWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 88888877642 22232 22334567899999998876553 335677777543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.47 Score=39.90 Aligned_cols=136 Identities=13% Similarity=0.030 Sum_probs=80.3
Q ss_pred EEEEeCC--CcEEEEeCCCCCCceeeeeccccCe-EEEEEeCCCCceEE-EEcCCcEEEEEccCCCCeeEEeeeeecCCC
Q 016769 233 VLAGYED--GSILVWDIRNPGIPLTAMKVHLEPV-LCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 233 ~~sg~~d--g~i~~wdl~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~s-~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
..+.+.+ +.|+.+|++++.. +..+.....+. ..+++.. ..+.. .-.++.+.+||.++... . ..+.....
T Consensus 34 yestG~~g~S~v~~vD~~tgkv-~~~~~l~~~~fgeGi~~~~--~~ly~ltw~~~~v~v~D~~tl~~--~--~ti~~~~~ 106 (243)
T 3mbr_X 34 YESTGETGRSSVRKVDLETGRI-LQRAEVPPPYFGAGIVAWR--DRLIQLTWRNHEGFVYDLATLTP--R--ARFRYPGE 106 (243)
T ss_dssp EEEECCTTSCEEEEEETTTCCE-EEEEECCTTCCEEEEEEET--TEEEEEESSSSEEEEEETTTTEE--E--EEEECSSC
T ss_pred EEECCCCCCceEEEEECCCCCE-EEEEeCCCCcceeEEEEeC--CEEEEEEeeCCEEEEEECCcCcE--E--EEEeCCCC
Confidence 4455554 5899999998543 44443322211 2344443 44433 34578899999875432 1 22222211
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecc--cc---cceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY--HH---ATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~---~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
-.+ +.++++.++.+..+++|.++|..+.+.+.++.- +. ..++-+.+. +|+.+|....+..|.+-|..
T Consensus 107 -Gwg--lt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~ 178 (243)
T 3mbr_X 107 -GWA--LTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPA 178 (243)
T ss_dssp -CCE--EEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTT
T ss_pred -ceE--EeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECC
Confidence 123 335666666666789999999999888776642 21 345667765 77777777667777776653
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=1.8 Score=43.24 Aligned_cols=139 Identities=9% Similarity=0.100 Sum_probs=86.5
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeee---------ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeee
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMK---------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI 303 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~ 303 (383)
+-.|+.++-|..||..+... ..+. .....|.++..+..+..+..|+.++.+.++|.+............
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~ 447 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRF--TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS 447 (795)
T ss_dssp EEEEESSSCEEEECTTTCCE--EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS
T ss_pred EEEEECCCCeEEEcCCCCcE--EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC
Confidence 66788888899999765322 2221 113568888888776536777777889999876432111100000
Q ss_pred ecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecc-------cccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 016769 304 NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY-------HHATCNAVSFSSDCKLMASASEDSTVALW 376 (383)
Q Consensus 304 ~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~v~~spd~~~las~s~d~~i~~w 376 (383)
......|.++...++++..+ |+.+ -+.+||..+++... +.. ....|.++...++|++.+... + -+..|
T Consensus 448 ~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~ 522 (795)
T 4a2l_A 448 QLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRSFTT-IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVF 522 (795)
T ss_dssp CCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTEEEE-CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEE
T ss_pred CcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCeEEE-ccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEE
Confidence 12235688899888887655 4454 48889987765432 211 235788999999998666554 4 46666
Q ss_pred eC
Q 016769 377 EL 378 (383)
Q Consensus 377 ~~ 378 (383)
|.
T Consensus 523 ~~ 524 (795)
T 4a2l_A 523 KQ 524 (795)
T ss_dssp EE
T ss_pred eC
Confidence 64
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.68 E-value=1.6 Score=41.97 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=37.0
Q ss_pred CCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 328 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 328 dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+|.|..||+.+++.+....... ++..-.+...+.+++.|+.|+.++.||...
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~t 516 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKS 516 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTT
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCC
Confidence 6889999999999887665322 222222233466788899999999999754
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.85 Score=38.72 Aligned_cols=113 Identities=11% Similarity=0.106 Sum_probs=71.4
Q ss_pred cCeEEEEEeCCCCceEE-EEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCc
Q 016769 262 EPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 340 (383)
Q Consensus 262 ~~v~~~~~~~~~~~~~s-~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~ 340 (383)
..+..++++++...+++ ...++.|...|++ +.......+ ......-++++.+++.++++.-.++.+.++++....
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~---g~v~~~i~l-~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN---GDLIRTIPL-DFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT---CCEEEEEEC-SSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC---CCEEEEEec-CCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 46788999987776654 5556667666664 332222112 122457788999999887776677899999986544
Q ss_pred eE---EEec------ccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 341 AL---AILK------YHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 341 ~~---~~~~------~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
.+ .... ......-.++|.|+++.|..+.+..-..+|.+
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence 22 2221 11223578999999976666666555555554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=95.59 E-value=1.3 Score=40.30 Aligned_cols=138 Identities=13% Similarity=0.086 Sum_probs=82.1
Q ss_pred CCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECC
Q 016769 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 317 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p 317 (383)
...|+..|+..... ..+......+..++|++....++-.. ..+.|..++++....................++++.+
T Consensus 91 ~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~ 168 (400)
T 3p5b_L 91 RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 168 (400)
T ss_dssp TTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEET
T ss_pred cceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEe
Confidence 57888888875322 22223345678899998666665544 4677888887642100001111222234578899987
Q ss_pred -CCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEe-C-CCcEEEEeC
Q 016769 318 -DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS-E-DSTVALWEL 378 (383)
Q Consensus 318 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s-~-d~~i~~w~~ 378 (383)
.++.+++-...++|.+.+++.......+.........|++.|.+..|..+. . .+.|...++
T Consensus 169 ~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 169 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp TTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred cCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 556666666788999999976554434433444578999999665444333 2 366777665
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.58 E-value=1.1 Score=39.28 Aligned_cols=135 Identities=12% Similarity=0.054 Sum_probs=79.2
Q ss_pred CCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCC---CCeeEEeeeeecCCCCeEEEE
Q 016769 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHS---TGSCVIKKEINLERPGISGTS 314 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~---~~~~~~~~~~~~~~~~i~~~~ 314 (383)
...|+..|+..... ...+. .......+.+++....++... ..+.|..++++.. +.... ..........+++
T Consensus 9 ~~~I~~i~~~~~~~-~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~---~~~~~~~~p~gla 83 (316)
T 1ijq_A 9 RHEVRKMTLDRSEY-TSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT---VISRDIQAPDGLA 83 (316)
T ss_dssp BSSEEEEETTSCCC-EEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE---EECSSCSCCCEEE
T ss_pred CCeEEEEECCCcce-Eehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE---EEeCCCCCcCEEE
Confidence 45688899876432 22222 344567899998766555444 4678888888641 11111 1111223467889
Q ss_pred ECCC-CcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEE-EEEeCC-CcEEEEeC
Q 016769 315 IRPD-SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASED-STVALWEL 378 (383)
Q Consensus 315 ~~p~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~l-as~s~d-~~i~~w~~ 378 (383)
+.+. ++.+++-..+++|.++|++.......+.........+++.|++..| .+.... +.|...++
T Consensus 84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~ 150 (316)
T 1ijq_A 84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 150 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence 9864 4555666678899999987543332333234567899999966644 443333 56777665
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=2.4 Score=42.36 Aligned_cols=139 Identities=12% Similarity=0.104 Sum_probs=88.1
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeee-------ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeee--
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMK-------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI-- 303 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~-- 303 (383)
+-.|+.++-|..|+...... ..+. .....|.++..+.++. +..|+.++.+..||.....-... ....
T Consensus 323 lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~-~~~~~~ 398 (795)
T 4a2l_A 323 MWLGTYFGGLNYYHPIRNRF--KNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSY-TLQEDE 398 (795)
T ss_dssp EEEEESSSCEEEECGGGGSS--EEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEE-CCC---
T ss_pred EEEEECCCCeEEeCCCcccc--eEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEE-ecCCCC
Confidence 66788888899998654321 1111 1234688888888764 56677777899997654321111 0000
Q ss_pred ---ecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEec-----ccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 016769 304 ---NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK-----YHHATCNAVSFSSDCKLMASASEDSTVAL 375 (383)
Q Consensus 304 ---~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~v~~spd~~~las~s~d~~i~~ 375 (383)
......|.++...++++.|..|+.++-|..||..+++.. .+. .....|.++...++|++.+... +| +.+
T Consensus 399 ~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~ 475 (795)
T 4a2l_A 399 SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVR 475 (795)
T ss_dssp ---CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEE
T ss_pred cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeE
Confidence 112356888888888885666888778999999877643 232 1345788998888888665544 44 666
Q ss_pred EeC
Q 016769 376 WEL 378 (383)
Q Consensus 376 w~~ 378 (383)
||.
T Consensus 476 ~~~ 478 (795)
T 4a2l_A 476 FNP 478 (795)
T ss_dssp EET
T ss_pred EeC
Confidence 764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.41 E-value=1.8 Score=43.25 Aligned_cols=142 Identities=6% Similarity=-0.009 Sum_probs=84.8
Q ss_pred EEEEeCCCcEEEEeCCCCC---CceeeeeccccCeEEEEEeCCCCceEEE-EcCCcEEEEEccCCCCeeEEeeeeecCCC
Q 016769 233 VLAGYEDGSILVWDIRNPG---IPLTAMKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~s~-~~d~~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
.++-...+.|+.+++.... .....+.........++++..+..++.. ...++|.+.+++......+ ......
T Consensus 439 Y~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l----~~~~l~ 514 (791)
T 3m0c_C 439 YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL----FRENGS 514 (791)
T ss_dssp EEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE----EECTTC
T ss_pred EEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEE----EeCCCC
Confidence 4455556778888875421 1122222233455678898777655544 4567899998874332221 122234
Q ss_pred CeEEEEECCCCcEEEEEeC--CCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeC
Q 016769 309 GISGTSIRPDSKIAATAGW--DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWEL 378 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~ 378 (383)
...++++.|...+|.-+.+ .++|...+++-......+...-...+.|++.|.++ ++++=.....|...++
T Consensus 515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 5889999997655555543 26899999865444434443445788999997665 4455455667877776
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.63 Score=41.04 Aligned_cols=138 Identities=16% Similarity=0.125 Sum_probs=81.3
Q ss_pred CCcEEEEeCC---CCCCc-eeeeecc-----------ccCeEEEEEeCCCCceEEEEcC-CcEEEEEccCCCCeeEEeee
Q 016769 239 DGSILVWDIR---NPGIP-LTAMKVH-----------LEPVLCLSIDESCNGGISGGAD-QKIVLYNLDHSTGSCVIKKE 302 (383)
Q Consensus 239 dg~i~~wdl~---~~~~~-~~~~~~h-----------~~~v~~~~~~~~~~~~~s~~~d-~~i~~wdl~~~~~~~~~~~~ 302 (383)
+..|..+|+. ++... ...+... ......+.+|+.++..++++.. +.|...+-+... ...+...
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~~~~~~~ 177 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-VSTFAWE 177 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-EEEEEEC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-Eeeeeec
Confidence 6778889988 43332 1122111 1246789999999988888887 777766654321 1111111
Q ss_pred e--ecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCce--EEEec-ccc---cceeE-EEEeCCCCE-EEEEeCCCc
Q 016769 303 I--NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA--LAILK-YHH---ATCNA-VSFSSDCKL-MASASEDST 372 (383)
Q Consensus 303 ~--~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-~h~---~~v~~-v~~spd~~~-las~s~d~~ 372 (383)
. .....+.++++++|+++.|+....+|.+..||+.+... +..-+ +.. ..... +.---+|+. |++.+..+.
T Consensus 178 ~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~ 257 (334)
T 2p9w_A 178 SGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYA 257 (334)
T ss_dssp CCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEE
T ss_pred CCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCE
Confidence 1 11223578999999999888887799999999986543 32110 211 11222 222236775 677777766
Q ss_pred EEEEe
Q 016769 373 VALWE 377 (383)
Q Consensus 373 i~~w~ 377 (383)
+.+.+
T Consensus 258 ~~l~S 262 (334)
T 2p9w_A 258 ISFRS 262 (334)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 55544
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.23 E-value=1 Score=45.11 Aligned_cols=140 Identities=12% Similarity=0.056 Sum_probs=80.7
Q ss_pred eCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEE-EcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEE
Q 016769 237 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 315 (383)
Q Consensus 237 ~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~-~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (383)
+....|+..++.... ...+......+..++++.....++.. ...+.|+.++++...........+........++++
T Consensus 401 an~~~Ir~i~l~~~~--~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv 478 (791)
T 3m0c_C 401 TNRHEVRKMTLDRSE--YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 478 (791)
T ss_dssp ECBSSEEEECTTSCC--CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred ccccceeEeeccCCc--ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence 345678888876532 22233334566788998865555444 445778888886421100111112222345678999
Q ss_pred CCCC-cEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEE-EEEeCC-CcEEEEeC
Q 016769 316 RPDS-KIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASED-STVALWEL 378 (383)
Q Consensus 316 ~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~l-as~s~d-~~i~~w~~ 378 (383)
.+.+ +++++-...++|.+.+++.......+.........|++.|.+..| .+-..+ +.|...++
T Consensus 479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 479 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred eecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 8766 556666678899999997554333333344567899999975544 443232 56766665
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.41 Score=43.75 Aligned_cols=71 Identities=10% Similarity=0.158 Sum_probs=54.3
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCc------------eEEEecc------cccceeEEEEeCCC---CEEEEE
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGS------------ALAILKY------HHATCNAVSFSSDC---KLMASA 367 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~------h~~~v~~v~~spd~---~~las~ 367 (383)
.+..+.++|+|+++|..+ +..|.|-.+..+. +.+++.- ...+|..+.|||-+ ..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 577899999999998765 6689999997432 1112221 24679999999954 589999
Q ss_pred eCCCcEEEEeCCC
Q 016769 368 SEDSTVALWELYP 380 (383)
Q Consensus 368 s~d~~i~~w~~~~ 380 (383)
..|++|++||+..
T Consensus 146 tsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 146 KEDDTITMFDILN 158 (452)
T ss_dssp ETTSCEEEEETTC
T ss_pred ecCCEEEEEEccc
Confidence 9999999999963
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=95.08 E-value=1.7 Score=38.62 Aligned_cols=140 Identities=15% Similarity=0.309 Sum_probs=82.8
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCC----CC----ceEEEEc--CCcEEEEEccCCCCeeEEeee
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES----CN----GGISGGA--DQKIVLYNLDHSTGSCVIKKE 302 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~----~~----~~~s~~~--d~~i~~wdl~~~~~~~~~~~~ 302 (383)
++.....+-+.+||+ + +..+..+.. ..++.+.+-+. +. .+++... +++|.+|+++..+........
T Consensus 43 ii~t~k~~gL~Vydl-~-G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-D-GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEETTTEEEEEET-T-SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEcCCCCEEEEcC-C-CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 455566778999999 4 333554542 33444444221 11 1233334 588999998654433211100
Q ss_pred ----eecCCCCeEEEEE--CCC-Cc-EEEEEeCCCcEEEEEcC-------CCceEEEecccccceeEEEEeCCCCEEEEE
Q 016769 303 ----INLERPGISGTSI--RPD-SK-IAATAGWDRRVRIYNYR-------KGSALAILKYHHATCNAVSFSSDCKLMASA 367 (383)
Q Consensus 303 ----~~~~~~~i~~~~~--~p~-~~-~l~s~~~dg~i~iwd~~-------~~~~~~~~~~h~~~v~~v~~spd~~~las~ 367 (383)
+......+.++++ +|. ++ |++....+|++..|++. +.+.+.++.- ...+..+...++...|..+
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~ 197 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIA 197 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEe
Confidence 1111145667777 774 43 68888899999999993 2244555542 3456677778888899999
Q ss_pred eCCCcEEEEeCC
Q 016769 368 SEDSTVALWELY 379 (383)
Q Consensus 368 s~d~~i~~w~~~ 379 (383)
-+|.- ||.+.
T Consensus 198 eEd~G--Iw~~d 207 (355)
T 3amr_A 198 EEDEA--IWKFS 207 (355)
T ss_dssp ETTTE--EEEEE
T ss_pred cccce--EEEEe
Confidence 99865 56553
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=94.92 E-value=1.5 Score=37.05 Aligned_cols=140 Identities=12% Similarity=-0.048 Sum_probs=83.0
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEc---CCcEEEEEccCCCCeeEEeeeeecCCCC
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA---DQKIVLYNLDHSTGSCVIKKEINLERPG 309 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~---d~~i~~wdl~~~~~~~~~~~~~~~~~~~ 309 (383)
.++....+.|.++|+..... .............+++++.+..++.+.. .+.|..++++....... .......
T Consensus 94 yv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~----~~~~~~~ 168 (267)
T 1npe_A 94 FWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL----AQDNLGL 168 (267)
T ss_dssp EEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE----ECTTCSC
T ss_pred EEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE----EECCCCC
Confidence 44556678899999864221 1122222235578999986666555543 36788888764332111 1112245
Q ss_pred eEEEEECCCCcEE-EEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 310 ISGTSIRPDSKIA-ATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 310 i~~~~~~p~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
..+++++|+++.| ++-...++|.++|++.......+.+ ......+++. ++..+++...++.|..+|..
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCC
Confidence 7899999986544 5555678999999975443333332 2234556654 34455555566888888764
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.15 Score=50.37 Aligned_cols=141 Identities=6% Similarity=-0.013 Sum_probs=77.5
Q ss_pred EEeCCCcEEEEeCCCC---CCceeeeeccccCeEEEEEeCCCCceEEE-EcCCcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 235 AGYEDGSILVWDIRNP---GIPLTAMKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 235 sg~~dg~i~~wdl~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~s~-~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
+-...+.|+.+++... ......+.........++++.....++.. ...+.|.+.+++...... .........
T Consensus 423 sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~----l~~~~~~~P 498 (699)
T 1n7d_A 423 SDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT----LFREQGSKP 498 (699)
T ss_dssp CCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEE----ECCCSSCCC
T ss_pred EecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEE----EEeCCCCCc
Confidence 3345677888887641 11111111112233467777544444433 456788888876432111 111122346
Q ss_pred EEEEECCCCcEEEEEeC--CCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 311 SGTSIRPDSKIAATAGW--DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 311 ~~~~~~p~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
..+++.|.+.+|..+.+ .++|..++++...........-...+.|+|+|+++ ++++-+..+.|..+++.
T Consensus 499 ~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 499 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp CCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred ceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 78899997655444443 26888888753322222222234567899999754 66666777788888873
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=94.69 E-value=1.4 Score=38.21 Aligned_cols=109 Identities=16% Similarity=0.102 Sum_probs=63.9
Q ss_pred eEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCC--cEEEEEcCCCce
Q 016769 264 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR--RVRIYNYRKGSA 341 (383)
Q Consensus 264 v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg--~i~iwd~~~~~~ 341 (383)
...+.+++++..+++...++.|..||.+.. . .. ... ......++++.++++++++..... .|..+|..+++.
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~--~-~~--~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGN--Q-QI--HAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC--E-EE--EEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCc--e-EE--EEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 346777776653344345677877775431 1 11 111 124578999999999766654433 477778777765
Q ss_pred EEEec-ccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 342 LAILK-YHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 342 ~~~~~-~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
..... ........+++.+++..+++-+.++.|..+|.
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~ 145 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV 145 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence 32221 12223455565666656666666887777775
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.76 Score=41.09 Aligned_cols=103 Identities=12% Similarity=0.104 Sum_probs=60.1
Q ss_pred CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeee-ecCCCCeEEEEECCC----CcEEEEEeCC-----CcEE
Q 016769 263 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI-NLERPGISGTSIRPD----SKIAATAGWD-----RRVR 332 (383)
Q Consensus 263 ~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~-~~~~~~i~~~~~~p~----~~~l~s~~~d-----g~i~ 332 (383)
....+.+++++. ++.+..++.|.+++ + .+......... .........++|+|+ +...++-..+ .+|.
T Consensus 32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSC-EEEEETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCe-EEEEeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 446788999887 55556778898887 2 22111111111 112356899999998 4444444432 6788
Q ss_pred EEEcCCCc-----eE-EEec---ccccceeEEEEeCCCCEEEEEe
Q 016769 333 IYNYRKGS-----AL-AILK---YHHATCNAVSFSSDCKLMASAS 368 (383)
Q Consensus 333 iwd~~~~~-----~~-~~~~---~h~~~v~~v~~spd~~~las~s 368 (383)
.|+...+. .+ ..+. +.......++|.|||.++++-+
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 88886431 11 1132 1112346889999998777644
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.62 E-value=1.8 Score=36.66 Aligned_cols=143 Identities=13% Similarity=0.104 Sum_probs=83.5
Q ss_pred EEEEEeCCCcEEEEeCCCCCC--ceeeee------ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCC--CCeeEEee
Q 016769 232 NVLAGYEDGSILVWDIRNPGI--PLTAMK------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS--TGSCVIKK 301 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~--~~~~~~------~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~--~~~~~~~~ 301 (383)
.+++.-.++.+.++++..... ...... ..+.....+++++.+..++.+.......+|.++.. +.......
T Consensus 83 ~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~ 162 (255)
T 3qqz_A 83 FVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISK 162 (255)
T ss_dssp EEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeec
Confidence 345544567788887765442 111111 12334578999999888777666555666665421 11111111
Q ss_pred e--e--ecCCCCeEEEEECCCC-cEEEEEeCCCcEEEEEcCCCceEEEec---cc------ccceeEEEEeCCCCEEEEE
Q 016769 302 E--I--NLERPGISGTSIRPDS-KIAATAGWDRRVRIYNYRKGSALAILK---YH------HATCNAVSFSSDCKLMASA 367 (383)
Q Consensus 302 ~--~--~~~~~~i~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~---~h------~~~v~~v~~spd~~~las~ 367 (383)
. . ......+.+++++|.. ++++.....+.+..+|.. ++.+..+. +. ......|+|.|+|+++++
T Consensus 163 ~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv- 240 (255)
T 3qqz_A 163 DKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV- 240 (255)
T ss_dssp CHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-
T ss_pred chhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-
Confidence 1 0 1122457899999865 566666778888888875 55554332 21 125688999999996666
Q ss_pred eCCCcEEEE
Q 016769 368 SEDSTVALW 376 (383)
Q Consensus 368 s~d~~i~~w 376 (383)
|+-+.+..|
T Consensus 241 sE~n~~y~f 249 (255)
T 3qqz_A 241 SEPNRFYRF 249 (255)
T ss_dssp ETTTEEEEE
T ss_pred cCCceEEEE
Confidence 666655444
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.61 E-value=1.2 Score=41.78 Aligned_cols=135 Identities=10% Similarity=0.063 Sum_probs=80.0
Q ss_pred CCcEEEEeCCCCCCceeee-ec---cccCeEEEEE-------eCCCCceEEEEcCC-----c--EEEEEccCCCCeeEE-
Q 016769 239 DGSILVWDIRNPGIPLTAM-KV---HLEPVLCLSI-------DESCNGGISGGADQ-----K--IVLYNLDHSTGSCVI- 299 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~-~~---h~~~v~~~~~-------~~~~~~~~s~~~d~-----~--i~~wdl~~~~~~~~~- 299 (383)
.+.|++.|++... +..+ .. .......++| ++++..++.....+ . +.+.+.+. ++....
T Consensus 161 ~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~-~G~~~~~ 237 (496)
T 3kya_A 161 HKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNA-DGTFDDR 237 (496)
T ss_dssp EEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCT-TSCCSTT
T ss_pred CCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCC-CCceeec
Confidence 4678888887632 2222 21 1234788999 99988666665543 2 44444222 111110
Q ss_pred --eeeeecCCCCeEEEEECCC-CcEEEEEeCCCcEEEEEcC-------CCce--------------EEEecccccceeEE
Q 016769 300 --KKEINLERPGISGTSIRPD-SKIAATAGWDRRVRIYNYR-------KGSA--------------LAILKYHHATCNAV 355 (383)
Q Consensus 300 --~~~~~~~~~~i~~~~~~p~-~~~l~s~~~dg~i~iwd~~-------~~~~--------------~~~~~~h~~~v~~v 355 (383)
...+. ......+++++|+ +.++++-..++.|+.+|+. ++.. +... +.......+
T Consensus 238 ~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~i 315 (496)
T 3kya_A 238 SDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQI 315 (496)
T ss_dssp SCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEE
T ss_pred ccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEE
Confidence 00111 1124568899995 5556666678889999997 4543 1122 122345789
Q ss_pred EEeCCCC-EEEEEeCCCcEEEEeC
Q 016769 356 SFSSDCK-LMASASEDSTVALWEL 378 (383)
Q Consensus 356 ~~spd~~-~las~s~d~~i~~w~~ 378 (383)
+|+|+|+ ++++=+....|+.+++
T Consensus 316 a~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 316 FIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEcCCCCEEEEEeCCCCEEEEEec
Confidence 9999999 5677777888888665
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=94.41 E-value=1.8 Score=39.83 Aligned_cols=143 Identities=8% Similarity=0.028 Sum_probs=85.6
Q ss_pred EEeCCCcEEEEeCCCCCCceeeeecc-ccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCCee----EEeeeee----
Q 016769 235 AGYEDGSILVWDIRNPGIPLTAMKVH-LEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSC----VIKKEIN---- 304 (383)
Q Consensus 235 sg~~dg~i~~wdl~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~----~~~~~~~---- 304 (383)
+-..++.|..+|..+.......+... ...-..+++++++..++.+. ..+.|..++++..++.. .+.....
T Consensus 245 ~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~ 324 (433)
T 4hw6_A 245 TRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGW 324 (433)
T ss_dssp CBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCC
T ss_pred EECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCcc
Confidence 34456778888876432201111111 12234699999988665544 46788888876433211 1110000
Q ss_pred -------cCCCCeEEEEE---------CCCCcEEEEEeCCCcEEEEEcCCCceEEEeccc------------------cc
Q 016769 305 -------LERPGISGTSI---------RPDSKIAATAGWDRRVRIYNYRKGSALAILKYH------------------HA 350 (383)
Q Consensus 305 -------~~~~~i~~~~~---------~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h------------------~~ 350 (383)
..-.....+++ .+++.++++-...++|+.++. ++.. .++.+. -.
T Consensus 325 ~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~ 402 (433)
T 4hw6_A 325 VDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFN 402 (433)
T ss_dssp BCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCS
T ss_pred CCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeC
Confidence 01123667999 778888787777889999985 4543 333211 12
Q ss_pred ceeEEEEe-CCCCEEEEEeCCCcEEEEeCC
Q 016769 351 TCNAVSFS-SDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 351 ~v~~v~~s-pd~~~las~s~d~~i~~w~~~ 379 (383)
....|++. ++|.++++=..++.|+.+++.
T Consensus 403 ~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 403 HPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 46789999 778888888888889888763
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.5 Score=43.63 Aligned_cols=110 Identities=12% Similarity=0.065 Sum_probs=66.5
Q ss_pred CeEEEEEeC-CCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC-CC----cEEEEEc
Q 016769 263 PVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW-DR----RVRIYNY 336 (383)
Q Consensus 263 ~v~~~~~~~-~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~-dg----~i~iwd~ 336 (383)
....+++++ ....++.+...+.|+.+|++...... .. ........++|++++++|..+.. ++ .+.+++.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~----~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST----VY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE----EE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE----Ee-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 445788887 34456665555778888876432111 11 13346889999999995555554 22 3444444
Q ss_pred CCCceE--EEecccccceeEEEEeC-CCCEEEEEeCCCcEEEEeCC
Q 016769 337 RKGSAL--AILKYHHATCNAVSFSS-DCKLMASASEDSTVALWELY 379 (383)
Q Consensus 337 ~~~~~~--~~~~~h~~~v~~v~~sp-d~~~las~s~d~~i~~w~~~ 379 (383)
. +... ..+.. ......++++| +|.++++-..++.|..++..
T Consensus 213 ~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~ 256 (430)
T 3tc9_A 213 E-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFT 256 (430)
T ss_dssp G-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred C-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 3 2211 22221 23456788999 77788877788888888864
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=93.91 E-value=3.1 Score=36.50 Aligned_cols=141 Identities=14% Similarity=0.005 Sum_probs=84.0
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEc--CCcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA--DQKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~--d~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
.++-...+.|.++++.... ....+.........+++++....++.... .+.|...+++........ .......
T Consensus 94 y~~d~~~~~I~~~~~dG~~-~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~----~~~l~~P 168 (318)
T 3sov_A 94 YWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII----NSEIYWP 168 (318)
T ss_dssp EEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE----CSSCSCE
T ss_pred EEEECCCCEEEEEECCCCc-EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE----ECCCCCc
Confidence 3455567788888876422 12222233445678899986555554442 467888887643222111 1122457
Q ss_pred EEEEECCCCc-EEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 311 SGTSIRPDSK-IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 311 ~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
++++++|+++ ..++=+..++|..+|++.........+.......+++.. +..+.+-...+.|..++..
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~ 237 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKY 237 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECC
Confidence 8999998655 445555678999999964333322332344556777753 4566667777888888764
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=93.56 E-value=1.1 Score=40.02 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=58.6
Q ss_pred CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEee-ee-ecCCCCeEEEEECCC----CcEEEEEeC---C----C
Q 016769 263 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK-EI-NLERPGISGTSIRPD----SKIAATAGW---D----R 329 (383)
Q Consensus 263 ~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~-~~-~~~~~~i~~~~~~p~----~~~l~s~~~---d----g 329 (383)
....+++++++. ++.+..++.|.+++- ++...+.. .. .........++|+|+ +.+.++-+. + .
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d~---~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERPGRLVLISP---SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CEEEEEEEETTE-EEEEETTTEEEEECS---SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCeEEEEcCCCe-EEEEeCCCEEEEEeC---CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345788888775 556667788888863 22211111 01 112356889999997 444444432 3 6
Q ss_pred cEEEEEcCCC-------ceE-EEec-ccccceeEEEEeCCCCEEEEEe
Q 016769 330 RVRIYNYRKG-------SAL-AILK-YHHATCNAVSFSSDCKLMASAS 368 (383)
Q Consensus 330 ~i~iwd~~~~-------~~~-~~~~-~h~~~v~~v~~spd~~~las~s 368 (383)
.|..|+.... +.+ ..+. +.......++|.|||+++++-+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 7888887643 111 1122 1112346789999999777644
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.77 Score=44.92 Aligned_cols=111 Identities=11% Similarity=0.037 Sum_probs=65.7
Q ss_pred EEEeC-CCCceEEEEcCC-----------cEEEEEccCCCCeeEEeeeeec-CCCCeEEEEECCCCcEEEEEeC-CCcEE
Q 016769 267 LSIDE-SCNGGISGGADQ-----------KIVLYNLDHSTGSCVIKKEINL-ERPGISGTSIRPDSKIAATAGW-DRRVR 332 (383)
Q Consensus 267 ~~~~~-~~~~~~s~~~d~-----------~i~~wdl~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~l~s~~~-dg~i~ 332 (383)
.++.+ .+..++.||.+. .+.+||....+...+ ..+.. ......+.++.++++.++.|+. +..+.
T Consensus 191 ~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~--~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 191 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR--TVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC--EEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred EEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC--cccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 34444 445555665432 467788765443222 11211 1222445778889999999984 56899
Q ss_pred EEEcCCCceEEEeccc-ccceeEEEEeCCCCEEEEEe-CC-----CcEEEEeCC
Q 016769 333 IYNYRKGSALAILKYH-HATCNAVSFSSDCKLMASAS-ED-----STVALWELY 379 (383)
Q Consensus 333 iwd~~~~~~~~~~~~h-~~~v~~v~~spd~~~las~s-~d-----~~i~~w~~~ 379 (383)
+||..+.+-...-..+ .+.-.++++.+||++++.|+ .+ ..+.+||..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 9999776432211111 22224456678999999998 44 568888874
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.18 E-value=4.7 Score=36.37 Aligned_cols=139 Identities=9% Similarity=-0.024 Sum_probs=84.5
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEc-C-CcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-D-QKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d-~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
.++-...+.|.+.++.... ....+.........+++++....++.... . +.|...+++........ .......
T Consensus 174 Y~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~----~~~~~~P 248 (386)
T 3v65_B 174 YWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA----DTHLFWP 248 (386)
T ss_dssp EEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE----CSSCSCE
T ss_pred EEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE----ECCCCCe
Confidence 4455667788888876422 22223333345678999987665554443 3 67888887643322211 1222357
Q ss_pred EEEEECCCCc-EEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 311 SGTSIRPDSK-IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 311 ~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
++++|+|+++ ++++-+..++|..+|++.......+.........+++ .++.++.+-...+.|..++
T Consensus 249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 249 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred eeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence 8999997655 4455556788999998654433333333445677787 3556777777788888877
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=7.2 Score=37.73 Aligned_cols=142 Identities=13% Similarity=0.039 Sum_probs=83.4
Q ss_pred EEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEE-EcCCcEEEEEccCCCCeeEEeeeeecCCCCeEE
Q 016769 234 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTGSCVIKKEINLERPGISG 312 (383)
Q Consensus 234 ~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~-~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~ 312 (383)
++-...+.|..+++.........+.........+++|..+..++.+ ...+.|.+.+++......+.. .......+
T Consensus 56 ~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~ 131 (619)
T 3s94_A 56 WSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRA 131 (619)
T ss_dssp EEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----SSCSCCCC
T ss_pred EEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe----CCCCCCce
Confidence 3444566777777754321122222223467789999866655544 456789999987543322221 22345778
Q ss_pred EEECCCCcEEEEEeC--CCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 313 TSIRPDSKIAATAGW--DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
+++.|.+.+|.-+.+ .+.|...+++-..........-...+.+++.|+++ ++.+=+..+.|...|+.
T Consensus 132 Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 132 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred EEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence 999987655555554 36777777754333333333445678999998755 55555666778877763
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=3.3 Score=36.89 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=69.9
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeee---ccccCeEEEEEeCC---CCceEEEEc----C----CcEEEEEccCCCCe--
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMK---VHLEPVLCLSIDES---CNGGISGGA----D----QKIVLYNLDHSTGS-- 296 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~---~h~~~v~~~~~~~~---~~~~~s~~~----d----~~i~~wdl~~~~~~-- 296 (383)
++.+..+|.|+++|. .....+..+. ........++++++ ...++.+.. + +.|..|+++.....
T Consensus 42 l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~ 120 (354)
T 3a9g_A 42 YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLK 120 (354)
T ss_dssp EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEE
T ss_pred EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcC
Confidence 455556688888873 2211121111 11235678999987 344443332 3 56777777643111
Q ss_pred ---eEEeeeeecCCCCeEEEEECCCCcEEEEEeC-------------CCcEEEEEcCCC---------ceEEEecccccc
Q 016769 297 ---CVIKKEINLERPGISGTSIRPDSKIAATAGW-------------DRRVRIYNYRKG---------SALAILKYHHAT 351 (383)
Q Consensus 297 ---~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~-------------dg~i~iwd~~~~---------~~~~~~~~h~~~ 351 (383)
.++.............++|.|||.++++.+. .|+|..++.+.. ..+... +|.+
T Consensus 121 ~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~-G~rn- 198 (354)
T 3a9g_A 121 EVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSY-GHRN- 198 (354)
T ss_dssp EEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEE-CCSC-
T ss_pred ccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEE-ccCC-
Confidence 1111111111123567999999987776442 256666665421 122222 4544
Q ss_pred eeEEEEeC-CCCEEEEEe
Q 016769 352 CNAVSFSS-DCKLMASAS 368 (383)
Q Consensus 352 v~~v~~sp-d~~~las~s 368 (383)
...++|+| +|+++++-.
T Consensus 199 p~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 199 PQGIDWHRASGVMVATEH 216 (354)
T ss_dssp CCEEEECTTTCCEEEEEC
T ss_pred cceEEEeCCCCCEEEEec
Confidence 57899999 677666543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=92.42 E-value=6.4 Score=36.00 Aligned_cols=138 Identities=12% Similarity=0.136 Sum_probs=86.4
Q ss_pred CCCcEEEEeCCCCCCceeeeecc----ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCC-Ce--------e-EEeeee
Q 016769 238 EDGSILVWDIRNPGIPLTAMKVH----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHST-GS--------C-VIKKEI 303 (383)
Q Consensus 238 ~dg~i~~wdl~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~-~~--------~-~~~~~~ 303 (383)
.++.||.-++.... .++.++.. ...+..+..++++..++.. .+..|.+-.+-... .. . .....+
T Consensus 39 ~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l 116 (452)
T 3pbp_A 39 QDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI 116 (452)
T ss_dssp ETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred ECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccccccceeEEEc
Confidence 36788888877433 35555543 2356778899999877665 46678887775221 00 0 001111
Q ss_pred ec----CCCCeEEEEECCCC---cEEEEEeCCCcEEEEEcCCCc--eE--------EEecccccceeEEEEeCCCCE--E
Q 016769 304 NL----ERPGISGTSIRPDS---KIAATAGWDRRVRIYNYRKGS--AL--------AILKYHHATCNAVSFSSDCKL--M 364 (383)
Q Consensus 304 ~~----~~~~i~~~~~~p~~---~~l~s~~~dg~i~iwd~~~~~--~~--------~~~~~h~~~v~~v~~spd~~~--l 364 (383)
.. ....|..+.|||-+ ..|++-..|++||+||+.... +. .........|.+++|.+++=. +
T Consensus 117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence 11 23569999999964 578888999999999997521 11 111223467899999997754 4
Q ss_pred EEEeCCCcEEEEe
Q 016769 365 ASASEDSTVALWE 377 (383)
Q Consensus 365 as~s~d~~i~~w~ 377 (383)
++.+++|.|+-.-
T Consensus 197 l~~t~~GDIYAlc 209 (452)
T 3pbp_A 197 LNTTEGGDIFAFY 209 (452)
T ss_dssp EECTTSCEEEEES
T ss_pred EecCCCCCEEEEC
Confidence 4455888775543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=92.16 E-value=3.2 Score=38.45 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=57.3
Q ss_pred CeEEEEEeCCCCceEEEEcC-CcEEEEEccCCCCeeEEeeeee-----cCCCCeEEEEECCC----CcEEEEEeC-----
Q 016769 263 PVLCLSIDESCNGGISGGAD-QKIVLYNLDHSTGSCVIKKEIN-----LERPGISGTSIRPD----SKIAATAGW----- 327 (383)
Q Consensus 263 ~v~~~~~~~~~~~~~s~~~d-~~i~~wdl~~~~~~~~~~~~~~-----~~~~~i~~~~~~p~----~~~l~s~~~----- 327 (383)
....|++++++..+++ ... +.|.+++..... ...+..... ....+...++|+|+ +.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~-e~~gg~I~~~~~~~g~-~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 28 KPHALLWGPDNQIWLT-ERATGKILRVNPESGS-VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SEEEEEECTTSCEEEE-ETTTCEEEEECTTTCC-EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CceEEEEcCCCcEEEE-EcCCCEEEEEECCCCc-EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3457889998875444 455 468777643222 111111111 12456789999995 444444432
Q ss_pred -------CCcEEEEEcCCC-------ceEE-Eec-ccccceeEEEEeCCCCEEEEEeC
Q 016769 328 -------DRRVRIYNYRKG-------SALA-ILK-YHHATCNAVSFSSDCKLMASASE 369 (383)
Q Consensus 328 -------dg~i~iwd~~~~-------~~~~-~~~-~h~~~v~~v~~spd~~~las~s~ 369 (383)
...|..|+.... +.+. .+. ........++|.|||+++++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666766432 1111 121 11234788999999997776553
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.08 E-value=6.1 Score=35.01 Aligned_cols=139 Identities=9% Similarity=-0.015 Sum_probs=83.9
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEE-cC-CcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-AD-QKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d-~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
.++-...+.|.+.++.... ....+.........+++++....++... .. +.|...+++....... ........
T Consensus 131 y~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~----~~~~~~~P 205 (349)
T 3v64_C 131 YWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII----ADTHLFWP 205 (349)
T ss_dssp EEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES----CCSSCSCE
T ss_pred EEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE----EECCCCCc
Confidence 4555667788888876432 2222223334567899998666554443 33 6788888764322111 11123457
Q ss_pred EEEEECCCCc-EEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 311 SGTSIRPDSK-IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 311 ~~~~~~p~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
++++++|+++ +.++-...++|..+|++.......+.........+++. ++..+.+-...+.|..++
T Consensus 206 nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEE
Confidence 8999998655 44554567889999987544333333334456777773 556667777777777776
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=90.78 E-value=10 Score=39.66 Aligned_cols=111 Identities=12% Similarity=0.106 Sum_probs=67.7
Q ss_pred CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCC------CcEEEEEeC-CCcEEEEE
Q 016769 263 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD------SKIAATAGW-DRRVRIYN 335 (383)
Q Consensus 263 ~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~------~~~l~s~~~-dg~i~iwd 335 (383)
.|...+... ..++.+. ++.+.++.++..+ ........ ....|.++++.|. +++++.|.+ |++++|+.
T Consensus 515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~--L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~s 588 (1158)
T 3ei3_A 515 NISVASCNS--SQVVVAV-GRALYYLQIHPQE--LRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILK 588 (1158)
T ss_dssp CCCEEEECS--SEEEEEE-TTEEEEEEEETTE--EEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEE
T ss_pred EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCc--eeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEE
Confidence 455555443 2344443 6778788877532 11111222 2457999999764 369999998 99999999
Q ss_pred cCCCceEEEecc-cccceeEEEEe--CCCCEEEEEeCCCcEEEEeCC
Q 016769 336 YRKGSALAILKY-HHATCNAVSFS--SDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 336 ~~~~~~~~~~~~-h~~~v~~v~~s--pd~~~las~s~d~~i~~w~~~ 379 (383)
+++.+.+....- -.....++.+. ....+|..|-.||.+.-+.+.
T Consensus 589 L~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 589 LPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp TTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 988776643221 11233334332 223488999999988776654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=90.72 E-value=1.5 Score=36.23 Aligned_cols=109 Identities=12% Similarity=0.064 Sum_probs=62.0
Q ss_pred CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCee--EE--eeeeec-CCCCeEEEEECCCCcEEEEEeCCCcEEEEEcC
Q 016769 263 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC--VI--KKEINL-ERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 337 (383)
Q Consensus 263 ~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~--~~--~~~~~~-~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~ 337 (383)
.+..++|+|++. +... .++. ||..+..++.. .+ ...+.. .-.....+.|.|+|.+.++ .||+|+-++-.
T Consensus 42 ~~~~laf~P~G~-LYaV-~~G~--Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGGE-LYGV-LNDK--IYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECTTSC-EEEE-ETTE--EEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECCCcc-EEEE-eCCe--EEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 455889999766 4444 5664 55444332110 00 011100 1112467889999988776 57999888764
Q ss_pred CCceE------EEe-cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 338 KGSAL------AIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 338 ~~~~~------~~~-~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
+...- ..+ +.-=+.+..|.|.|+|.+.|.. |+. ++.-.+|
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~--lyr~~~P 162 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ--FYKALPP 162 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE--EEEECCC
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc--EEecCCC
Confidence 42111 111 1122467899999999988777 665 4445555
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=90.10 E-value=7.7 Score=34.44 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=59.7
Q ss_pred cCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee--e-ecCCCCeEEEEECCC----CcEEEEEe--CCCcEE
Q 016769 262 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE--I-NLERPGISGTSIRPD----SKIAATAG--WDRRVR 332 (383)
Q Consensus 262 ~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~--~-~~~~~~i~~~~~~p~----~~~l~s~~--~dg~i~ 332 (383)
.....|++.+++..+++--..+.|++++.+..... .+... . .....+...++|+|+ +.+.++-+ .+++|.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34567889888875454433888888864332211 11110 1 123457899999995 44444333 456677
Q ss_pred EEEcCCC----------ceE-EEec-ccccceeEEEEeCCCCEEEEEe
Q 016769 333 IYNYRKG----------SAL-AILK-YHHATCNAVSFSSDCKLMASAS 368 (383)
Q Consensus 333 iwd~~~~----------~~~-~~~~-~h~~~v~~v~~spd~~~las~s 368 (383)
-|.+..+ +.+ ..+. +.......++|.|||.++++.+
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 7766541 111 1221 1122356789999999777754
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=90.05 E-value=1.4 Score=43.56 Aligned_cols=141 Identities=11% Similarity=-0.026 Sum_probs=78.9
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEc--CCcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA--DQKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~--d~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
.++-...+.|.++++.... ....+.........+++++.+..++.... .+.|.+.+++......+. .......
T Consensus 468 Y~tD~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~----~~~l~~P 542 (699)
T 1n7d_A 468 YWTDSVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV----TENIQWP 542 (699)
T ss_dssp EECCTTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES----CSSCSSC
T ss_pred EEEeccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE----eCCCCCc
Confidence 3444556788888876422 12222222234467788876555544332 267777776543221111 1122346
Q ss_pred EEEEECCCC-cEEEEEeCCCcEEEEEcCCCceEEEecc--cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 311 SGTSIRPDS-KIAATAGWDRRVRIYNYRKGSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 311 ~~~~~~p~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
++++|+|++ +++++-+..++|..+|++.......+.. .......+++..+ .++++....+.|..++..
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL 613 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence 789999875 4555556678999999964333322221 1223445566544 566667777888888753
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=89.60 E-value=9.1 Score=35.52 Aligned_cols=109 Identities=8% Similarity=0.039 Sum_probs=61.0
Q ss_pred CeEEEEEeCCCC-ceEEEEcCCcEEEEEccCCCC-eeEEee-e-ee-----cCCCCeEEEEECCC----CcEEEEEeCC-
Q 016769 263 PVLCLSIDESCN-GGISGGADQKIVLYNLDHSTG-SCVIKK-E-IN-----LERPGISGTSIRPD----SKIAATAGWD- 328 (383)
Q Consensus 263 ~v~~~~~~~~~~-~~~s~~~d~~i~~wdl~~~~~-~~~~~~-~-~~-----~~~~~i~~~~~~p~----~~~l~s~~~d- 328 (383)
.-..|+|.+++. .++.+...|.|++++-+.... ...... . .. ....+...++|+|+ +.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 445788888875 466677889999886432110 111100 0 10 11357889999997 5555544421
Q ss_pred -----------CcEEEEEcCC----------CceEEEec--ccccceeEEEEeCCCCEEEEEeCCC
Q 016769 329 -----------RRVRIYNYRK----------GSALAILK--YHHATCNAVSFSSDCKLMASASEDS 371 (383)
Q Consensus 329 -----------g~i~iwd~~~----------~~~~~~~~--~h~~~v~~v~~spd~~~las~s~d~ 371 (383)
.+|.-|.+.. .+.+..+. ........|+|.|||++.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1455566642 12222221 1123467899999999777666544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=89.37 E-value=4.9 Score=35.74 Aligned_cols=107 Identities=9% Similarity=0.092 Sum_probs=57.9
Q ss_pred CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEee-ee-ecCCCCeEEEEECCC----CcEEEEEeC-------CC
Q 016769 263 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK-EI-NLERPGISGTSIRPD----SKIAATAGW-------DR 329 (383)
Q Consensus 263 ~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~-~~-~~~~~~i~~~~~~p~----~~~l~s~~~-------dg 329 (383)
....|.+++++..++.+...+.|++++-+.......... .. .....+...++|+|+ +.+.++-+. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 446788999887455666788888887431100000000 01 112346789999995 544444333 23
Q ss_pred cEEEEEcCCC--c--eEE-Eecc------cccceeEEEEeCCCCEEEEEeC
Q 016769 330 RVRIYNYRKG--S--ALA-ILKY------HHATCNAVSFSSDCKLMASASE 369 (383)
Q Consensus 330 ~i~iwd~~~~--~--~~~-~~~~------h~~~v~~v~~spd~~~las~s~ 369 (383)
+|..|++... + ... .+.. .......++|.|||.++++-+.
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 6777777532 1 111 1111 1112467899999986666543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.10 E-value=18 Score=35.87 Aligned_cols=143 Identities=12% Similarity=0.030 Sum_probs=83.9
Q ss_pred EEEEEeCCCcEEEEeCCCCCCce-ee------------eeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPL-TA------------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV 298 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~-~~------------~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~ 298 (383)
.+-.|+..+-|.++|..+..... .. .......|.++..|..+. +-.|+.++.|..++.....-...
T Consensus 270 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~ 348 (781)
T 3v9f_A 270 KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTW 348 (781)
T ss_dssp EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEE
T ss_pred CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceee
Confidence 46667775678888876532110 00 011234688888888764 56777788888887654322111
Q ss_pred Eee-----eeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEe----cccccceeEEEEeCCCCEEEEEeC
Q 016769 299 IKK-----EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL----KYHHATCNAVSFSSDCKLMASASE 369 (383)
Q Consensus 299 ~~~-----~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~v~~spd~~~las~s~ 369 (383)
... ........|.++...+++.+ ..|+.++-|..||..++... .+ ......|.++...++|++.+ |+.
T Consensus 349 ~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~ 425 (781)
T 3v9f_A 349 SYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAI-YNKENRELLSNSVLCSLKDSEGNLWF-GTY 425 (781)
T ss_dssp C----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEE-CC-----CCCSBEEEEEECTTSCEEE-EET
T ss_pred ccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEE-EccCCCCCCCcceEEEEECCCCCEEE-Eec
Confidence 000 01112346888988888865 45665666888998654322 11 12345788888888887655 565
Q ss_pred CCcEEEEeC
Q 016769 370 DSTVALWEL 378 (383)
Q Consensus 370 d~~i~~w~~ 378 (383)
++-+..+|.
T Consensus 426 ~~Gl~~~~~ 434 (781)
T 3v9f_A 426 LGNISYYNT 434 (781)
T ss_dssp TEEEEEECS
T ss_pred cCCEEEEcC
Confidence 555666654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.04 E-value=15 Score=34.40 Aligned_cols=148 Identities=9% Similarity=0.076 Sum_probs=89.6
Q ss_pred EEEEEeCCCcEEEEeCC-------CCCC-----c-----eee-eec-cccCeEEEEEeCCCCceEEE-EcCCcEEEEEcc
Q 016769 232 NVLAGYEDGSILVWDIR-------NPGI-----P-----LTA-MKV-HLEPVLCLSIDESCNGGISG-GADQKIVLYNLD 291 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~-------~~~~-----~-----~~~-~~~-h~~~v~~~~~~~~~~~~~s~-~~d~~i~~wdl~ 291 (383)
..++-..++.|..+|+. +... + ... +.. .......+++++++..++.+ ...+.|+.++.+
T Consensus 261 LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 261 LYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 34556778889999986 3322 0 111 111 12335789999999865544 456778887776
Q ss_pred CCCCee----EEeeeeec-----------CCCCeE-EEEEC-------CCCcEEEEEeCCCcEEEEEcCCCceEEEeccc
Q 016769 292 HSTGSC----VIKKEINL-----------ERPGIS-GTSIR-------PDSKIAATAGWDRRVRIYNYRKGSALAILKYH 348 (383)
Q Consensus 292 ~~~~~~----~~~~~~~~-----------~~~~i~-~~~~~-------p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h 348 (383)
...... .+.-.... .-.... .+++. +++.++++=..+.+|+.++ .++. +.++-+.
T Consensus 341 g~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~ 418 (496)
T 3kya_A 341 EIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGR 418 (496)
T ss_dssp TTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEES
T ss_pred CCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecc
Confidence 443221 11110000 001234 45554 5677777777889999998 4554 4344221
Q ss_pred ------------------------ccceeEEEEeCC-CCEEEEEeCCCcEEEEeCCCC
Q 016769 349 ------------------------HATCNAVSFSSD-CKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 349 ------------------------~~~v~~v~~spd-~~~las~s~d~~i~~w~~~~~ 381 (383)
-.....|++.++ |.++++=+.+..|+.+++..+
T Consensus 419 g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 419 GASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp CTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred cccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 124678999997 888888888999999988654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=88.18 E-value=7.3 Score=32.16 Aligned_cols=111 Identities=15% Similarity=0.049 Sum_probs=60.4
Q ss_pred eEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEE---eeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCc
Q 016769 264 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI---KKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 340 (383)
Q Consensus 264 v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~---~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~ 340 (383)
-..+.||+++...++ .|+.|..++--+......+ .+.....=..+..+.|.|+|...+.. |++++-....+..
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSN 165 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSST
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCC
Confidence 356788988865444 6788876652111111000 00001111357889999999877765 8886543333211
Q ss_pred ------eEEEec-ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q 016769 341 ------ALAILK-YHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 382 (383)
Q Consensus 341 ------~~~~~~-~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~~ 382 (383)
....+. ..-+.-..+.|.|++.+.+.. ++ ++|...+|.
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p~ 210 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPPS 210 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESCCC
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCCcc
Confidence 011111 112223346699999877665 66 777777664
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=87.50 E-value=14 Score=34.08 Aligned_cols=115 Identities=21% Similarity=0.192 Sum_probs=61.4
Q ss_pred cCeEEEEEeCC---CCceEEEE-c------------CCcEEEEEccCCCCee-----EEeeeeecCCCCeEEEEECCCCc
Q 016769 262 EPVLCLSIDES---CNGGISGG-A------------DQKIVLYNLDHSTGSC-----VIKKEINLERPGISGTSIRPDSK 320 (383)
Q Consensus 262 ~~v~~~~~~~~---~~~~~s~~-~------------d~~i~~wdl~~~~~~~-----~~~~~~~~~~~~i~~~~~~p~~~ 320 (383)
.-...++++|+ ...++.+. . ...|..++++...... ++.............++|.|||+
T Consensus 77 ~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~ 156 (454)
T 1cru_A 77 NGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK 156 (454)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC
T ss_pred CceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe
Confidence 34568999985 34443332 1 2356666665432211 11111111223578999999999
Q ss_pred EEEEEeCC--------------------------------CcEEEEEcCCCc-----------eEEEec-ccccceeEEE
Q 016769 321 IAATAGWD--------------------------------RRVRIYNYRKGS-----------ALAILK-YHHATCNAVS 356 (383)
Q Consensus 321 ~l~s~~~d--------------------------------g~i~iwd~~~~~-----------~~~~~~-~h~~~v~~v~ 356 (383)
+.++.+.. |+|.-++.+ ++ ....+. +|. ....++
T Consensus 157 Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~R-Np~gla 234 (454)
T 1cru_A 157 IYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGHR-NPQGLA 234 (454)
T ss_dssp EEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCCS-EEEEEE
T ss_pred EEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECCC-CcceEE
Confidence 77765532 445444443 22 112222 454 468899
Q ss_pred EeCCCCEEEE-EeCCCcEEEEeC
Q 016769 357 FSSDCKLMAS-ASEDSTVALWEL 378 (383)
Q Consensus 357 ~spd~~~las-~s~d~~i~~w~~ 378 (383)
|.|+|++.++ -+.|+.-+|.-+
T Consensus 235 ~dp~G~L~~~d~g~~~~dein~i 257 (454)
T 1cru_A 235 FTPNGKLLQSEQGPNSDDEINLI 257 (454)
T ss_dssp ECTTSCEEEEEECSSSCEEEEEC
T ss_pred ECCCCCEEEEecCCCCCeEEEEe
Confidence 9999886554 444544444433
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=85.30 E-value=19 Score=31.82 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=71.6
Q ss_pred EEEEeC-CCcEEEEeCCCCCC-ceeee----eccccCeEEEEEeCC---CCceEEE---EcCCcEEEEEccCCC------
Q 016769 233 VLAGYE-DGSILVWDIRNPGI-PLTAM----KVHLEPVLCLSIDES---CNGGISG---GADQKIVLYNLDHST------ 294 (383)
Q Consensus 233 ~~sg~~-dg~i~~wdl~~~~~-~~~~~----~~h~~~v~~~~~~~~---~~~~~s~---~~d~~i~~wdl~~~~------ 294 (383)
++.... .|.|++++...... .+..+ .........++++|+ ...++.. ..+++|..|.++...
T Consensus 45 llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~ 124 (347)
T 3das_A 45 LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQL 124 (347)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCB
T ss_pred EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccC
Confidence 444444 78888887543221 11111 112345678999885 2233322 245667777765421
Q ss_pred --CeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC-------------CCcEEEEEcCCC---------ceEEEeccccc
Q 016769 295 --GSCVIKKEINLERPGISGTSIRPDSKIAATAGW-------------DRRVRIYNYRKG---------SALAILKYHHA 350 (383)
Q Consensus 295 --~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~-------------dg~i~iwd~~~~---------~~~~~~~~h~~ 350 (383)
...++.............+.|.|||.+.++.+. .|+|.-++.+.. ..+... +|.+
T Consensus 125 ~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~-G~RN 203 (347)
T 3das_A 125 GAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSY-GHRN 203 (347)
T ss_dssp CCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEB-CCSB
T ss_pred CCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEee-CCCC
Confidence 112221111111223567999999987776542 466666665422 123222 5654
Q ss_pred ceeEEEEeCCCCEEEEE
Q 016769 351 TCNAVSFSSDCKLMASA 367 (383)
Q Consensus 351 ~v~~v~~spd~~~las~ 367 (383)
...++|+|+|++.++-
T Consensus 204 -p~Gla~dp~G~L~~~d 219 (347)
T 3das_A 204 -VQGLAWDDKQRLFASE 219 (347)
T ss_dssp -CCEEEECTTCCEEEEE
T ss_pred -cceEEECCCCCEEEEe
Confidence 5789999998876653
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=84.78 E-value=42 Score=35.19 Aligned_cols=132 Identities=14% Similarity=0.200 Sum_probs=78.6
Q ss_pred CCCcEEEEeCCCCCCceeee--eccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEE
Q 016769 238 EDGSILVWDIRNPGIPLTAM--KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 315 (383)
Q Consensus 238 ~dg~i~~wdl~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (383)
..|.|.+|++...+ +..+ +...+++.++.--. + .+.++..+.+++|++..... +....... ..+..+.+
T Consensus 862 ~~Gri~vf~v~~~k--L~lv~~~~v~g~v~al~~~~-g--~Lla~ig~~l~vy~l~~~~~---L~~~~~~~-~~i~~~~l 932 (1158)
T 3ei3_A 862 KQGRIVVFQYSDGK--LQTVAEKEVKGAVYSMVEFN-G--KLLASINSTVRLYEWTTEKE---LRTECNHY-NNIMALYL 932 (1158)
T ss_dssp CCEEEEEEEEETTE--EEEEEEEEESSCEEEEEEET-T--EEEEEETTEEEEEEECTTSC---EEEEEEEC-CCSCEEEE
T ss_pred CceEEEEEEEECCE--EEEEEEEEcCCcCEEEeeeC-C--EEEEEcCCEEEEEECCCCce---EEEEeecc-ccEEEEEE
Confidence 35789999986322 2222 12245777766432 2 34455678999999975431 11111111 11223333
Q ss_pred CCCCcEEEEEeCCCcEEEEEc--CCCceEEEe--cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 316 RPDSKIAATAGWDRRVRIYNY--RKGSALAIL--KYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 316 ~p~~~~l~s~~~dg~i~iwd~--~~~~~~~~~--~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
...+.+++.|..-+.|.++.. ..++ +..+ ..+...+.++.|--+ ..++.+..+|.+.+....+
T Consensus 933 ~~~~~~I~vgD~~~Sv~~~~y~~~~~~-L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 933 KTKGDFILVGDLMRSVLLLAYKPMEGN-FEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEETTEEEEEESSBCEEEEEEETTTTE-EEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred eccCCEEEEEEhhheEEEEEEEcCCCe-EEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence 335678888888888877544 3333 3333 235678888888644 5788899999999988753
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=82.84 E-value=39 Score=33.41 Aligned_cols=138 Identities=14% Similarity=0.083 Sum_probs=81.3
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeee----eccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAM----KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
+-.|+.++-|..||..+.. ...+ ......|.++..+..+. +..|+.++.+..+|.+. +.............
T Consensus 376 lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~--~~~~~~~~~~~~~~ 450 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRV--AIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRL--KKFQIIELEKNELL 450 (781)
T ss_dssp EEEEEBSSCEEEEETTEEE--EECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSS--CEEEECCSTTTCCC
T ss_pred EEEEeCCCcEEEEECCCCe--EEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCC--CcEEEeccCCCCCC
Confidence 6667777778889865421 1111 11235678888887654 55666667788886543 22211100012235
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEeccc-----ccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH-----HATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
.|.++...+++++.+ |+. +-+..||..+++........ ...|.++...++|++.+....+| +..||.
T Consensus 451 ~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~ 522 (781)
T 3v9f_A 451 DVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTP 522 (781)
T ss_dssp CEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECT
T ss_pred eEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeC
Confidence 688888888887554 555 45888998776543222111 35788998888888665444344 555654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=82.37 E-value=26 Score=30.97 Aligned_cols=132 Identities=7% Similarity=0.004 Sum_probs=66.7
Q ss_pred EEEEeCCCcEEEEeCCCCC-Cceeee----eccccCeEEEEEeCC---CCceEEE-Ec-------CCcEEEEEccCCCCe
Q 016769 233 VLAGYEDGSILVWDIRNPG-IPLTAM----KVHLEPVLCLSIDES---CNGGISG-GA-------DQKIVLYNLDHSTGS 296 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~-~~~~~~----~~h~~~v~~~~~~~~---~~~~~s~-~~-------d~~i~~wdl~~~~~~ 296 (383)
++.+...|.|++++..... ..+..+ .........++++++ ...++.+ .. ...|..++++.....
T Consensus 32 l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~ 111 (353)
T 2g8s_A 32 MLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSK 111 (353)
T ss_dssp EEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSB
T ss_pred EEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCC
Confidence 4445557888888743210 011111 111234578899885 3334333 22 235666776543221
Q ss_pred eEEee----eee---cCCCCeEEEEECCCCcEEEEEeC-------------CCcEEEEEcCCC--------------ceE
Q 016769 297 CVIKK----EIN---LERPGISGTSIRPDSKIAATAGW-------------DRRVRIYNYRKG--------------SAL 342 (383)
Q Consensus 297 ~~~~~----~~~---~~~~~i~~~~~~p~~~~l~s~~~-------------dg~i~iwd~~~~--------------~~~ 342 (383)
..... .+. ........++|.|||.+.++.+. .|+|.-+|.+.. ..+
T Consensus 112 ~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i 191 (353)
T 2g8s_A 112 VTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEI 191 (353)
T ss_dssp EEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTE
T ss_pred CCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccE
Confidence 11111 111 11122467999999976666543 246777776532 112
Q ss_pred EEecccccceeEEEEeC-CCCEEEE
Q 016769 343 AILKYHHATCNAVSFSS-DCKLMAS 366 (383)
Q Consensus 343 ~~~~~h~~~v~~v~~sp-d~~~las 366 (383)
... +|. ....++|.| +|+++++
T Consensus 192 ~a~-G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 192 WSY-GIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp EEE-CCS-EEEEEEEETTTTEEEEE
T ss_pred EEE-cCc-CccceEEECCCCCEEEE
Confidence 222 444 468899999 6665554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=81.65 E-value=28 Score=30.90 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=70.1
Q ss_pred CCcEEEEeCCCCCCcee---eeecc-ccCeEEEEEeCCCCceEEEE---cC------------CcEEEEEccCCCCeeEE
Q 016769 239 DGSILVWDIRNPGIPLT---AMKVH-LEPVLCLSIDESCNGGISGG---AD------------QKIVLYNLDHSTGSCVI 299 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~---~~~~h-~~~v~~~~~~~~~~~~~s~~---~d------------~~i~~wdl~~~~~~~~~ 299 (383)
+++|.+|++........ .+.+. ....+.+.+++++...++.. .| ..=.+|-++..+.....
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~ 217 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA 217 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEE
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEee
Confidence 67888888765332222 22211 23457788888775434332 01 12244444433222111
Q ss_pred eeeeecCCCCeEEEEECCCCcEEEEE-eCCCcEEEEEcCC-Cce--EEEecccccceeEEEEeC-CCCEEEEEeCC
Q 016769 300 KKEINLERPGISGTSIRPDSKIAATA-GWDRRVRIYNYRK-GSA--LAILKYHHATCNAVSFSS-DCKLMASASED 370 (383)
Q Consensus 300 ~~~~~~~~~~i~~~~~~p~~~~l~s~-~~dg~i~iwd~~~-~~~--~~~~~~h~~~v~~v~~sp-d~~~las~s~d 370 (383)
. .-...++++|+||++++..+ +..++|..|+++. ++. ...+ ......-.+++.+ +|++.+++..+
T Consensus 218 -~----~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 218 -E----GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp -E----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred -c----CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 1 11347899999999765544 4678999999964 322 1223 2234566778888 58877766544
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.08 E-value=25 Score=29.89 Aligned_cols=91 Identities=15% Similarity=0.216 Sum_probs=46.2
Q ss_pred CcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC-----CcEEEEEcCCCceEE--EecccccceeEE
Q 016769 283 QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD-----RRVRIYNYRKGSALA--ILKYHHATCNAV 355 (383)
Q Consensus 283 ~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~~~~~--~~~~h~~~v~~v 355 (383)
..+.+||+...+ ......+.........+.+ +++.++.|+.+ ..+.+||+.+.+=.. .+. ....-.++
T Consensus 173 ~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~ 247 (302)
T 2xn4_A 173 STVECYNATTNE--WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN-MCRRNAGV 247 (302)
T ss_dssp CCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEE
T ss_pred cEEEEEeCCCCc--EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC-CccccCeE
Confidence 346777775432 2221222222222233333 56777777764 368899997754221 111 11111122
Q ss_pred EEeCCCCEEEEEeCCC-----cEEEEeCC
Q 016769 356 SFSSDCKLMASASEDS-----TVALWELY 379 (383)
Q Consensus 356 ~~spd~~~las~s~d~-----~i~~w~~~ 379 (383)
+. -++++++.|+.++ .|.+||+.
T Consensus 248 ~~-~~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 248 CA-VNGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp EE-ETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred EE-ECCEEEEECCcCCCcccccEEEEcCC
Confidence 22 3678888888664 37777763
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.86 E-value=25 Score=29.81 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=49.6
Q ss_pred ceEEEEcC-----CcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC-----CcEEEEEcCCCceEEE
Q 016769 275 GGISGGAD-----QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD-----RRVRIYNYRKGSALAI 344 (383)
Q Consensus 275 ~~~s~~~d-----~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d-----g~i~iwd~~~~~~~~~ 344 (383)
.++.||.+ ..+.+||+...+ ......+.........+.+ +++.++.|+.+ ..+.+||+.+.+-...
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 237 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTGH--WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred EEEECCCCCCcccceEEEEeCCCCc--EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEEC
Confidence 34455543 446777776432 2211122222222233333 56777777764 4688999987643221
Q ss_pred ecc-cccceeEEEEeCCCCEEEEEeCCC-----cEEEEeCC
Q 016769 345 LKY-HHATCNAVSFSSDCKLMASASEDS-----TVALWELY 379 (383)
Q Consensus 345 ~~~-h~~~v~~v~~spd~~~las~s~d~-----~i~~w~~~ 379 (383)
-.. ....-.++. .-++++++.|+.++ .|.+||+.
T Consensus 238 ~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 238 TSMTTPRCYVGAT-VLRGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp CCCSSCCBSCEEE-EETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred CCCCCcccceeEE-EECCEEEEEcCcCCCcccccEEEEcCC
Confidence 110 111111222 22678888887663 46666653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=80.38 E-value=11 Score=33.50 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=43.4
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCCCce--EEEec---ccccceeEEEEeCC----CCEEEEEeCC-----CcEE
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA--LAILK---YHHATCNAVSFSSD----CKLMASASED-----STVA 374 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~---~h~~~v~~v~~spd----~~~las~s~d-----~~i~ 374 (383)
....++|.|+|+++++ ..+++|++++ .++. +..+. ........++|+|| +...++-+.+ +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4678999999996654 5679999998 4432 21111 12346789999998 4455554432 4566
Q ss_pred EEeCC
Q 016769 375 LWELY 379 (383)
Q Consensus 375 ~w~~~ 379 (383)
.|++.
T Consensus 109 r~~~~ 113 (352)
T 2ism_A 109 RLRHL 113 (352)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 66553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 383 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-20 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-18 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-16 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.001 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.002 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 9e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 9e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.004 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-04 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 88.3 bits (217), Expect = 4e-20
Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 3/143 (2%)
Query: 234 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 293
++G D S +WD+R G+ H + + + N +G D L++L
Sbjct: 200 VSGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 294 TGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN 353
+ GI+ S ++ D +++ K +L H +
Sbjct: 259 QELMTYSHDNI--ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Query: 354 AVSFSSDCKLMASASEDSTVALW 376
+ + D +A+ S DS + +W
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.1 bits (131), Expect = 5e-09
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
GH + + +CF G+ R++D + + + + GI SV+
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENG 96
S +++ D WD
Sbjct: 278 FSKS--GRLLLAGYDDFNCNVWDALKA 302
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.6 bits (114), Expect = 5e-07
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 6/124 (4%)
Query: 257 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 316
H V+ LS+ +SG D L+++ G C + I+
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR--EGMCR--QTFTGHESDINAICFF 235
Query: 317 PDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC--NAVSFSSDCKLMASASEDSTVA 374
P+ AT D R+++ R L + + C +VSFS +L+ + +D
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 375 LWEL 378
+W+
Sbjct: 296 VWDA 299
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.4 bits (111), Expect = 1e-06
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 320 KIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379
++ + D ++++ R+G H + NA+ F + A+ S+D+T L++L
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 380 PPH 382
Sbjct: 257 ADQ 259
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
D VL GH V+ + + G+ L+IW+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.9 bits (211), Expect = 2e-19
Identities = 54/372 (14%), Positives = 97/372 (26%), Gaps = 59/372 (15%)
Query: 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
P P L GHR+ VT V FH ++ +
Sbjct: 5 PRPPEKYALSGHRSPVTRVIFHPVFSVMVSA----------------------------- 35
Query: 66 VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN 125
D T+K WD E G +L T+S + A+
Sbjct: 36 -----------------SEDATIKVWDYETGDFER--TLKGHTDSVQDISFDHSGKLLAS 76
Query: 126 AKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEI 185
K + + S D + + E + +
Sbjct: 77 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 136
Query: 186 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245
R+ + + G+ S ++ L + +
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVR----VWVVATKECKAELREHRHVVECIS 192
Query: 246 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL 305
+ E SG D+ I ++ D STG C+ +
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLL---SGSRDKTIKMW--DVSTGMCL--MTLVG 245
Query: 306 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMA 365
+ G K + D+ +R+++Y+ + L H ++ F +
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305
Query: 366 SASEDSTVALWE 377
+ S D TV +WE
Sbjct: 306 TGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.3 bits (90), Expect = 5e-04
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 338 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378
+ L H + V F +M SASED+T+ +W+
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY 46
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 83.7 bits (205), Expect = 2e-18
Identities = 51/374 (13%), Positives = 105/374 (28%), Gaps = 35/374 (9%)
Query: 27 HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG--IVSVATGPSIGLNKVISQGR 84
Q+ P T +++ R + S H + V + ++ G
Sbjct: 25 SQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND---GEYLATGC 81
Query: 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV 144
+ T + + + +G L + S K+P ++ D Y R V +
Sbjct: 82 NKTTQVYRVSDGSL-------VARLSDDSA---ANKDPENLNTSSSPSSDLYIRSVCFSP 131
Query: 145 DTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG 204
D L E + + S + +
Sbjct: 132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191
Query: 205 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI------PLTAMK 258
+ + AG D ++ VWD + +
Sbjct: 192 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT 251
Query: 259 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLD--------HSTGSCVIKKEINLERPGI 310
H + V + +SG D+ + L+NL + S + + +
Sbjct: 252 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 311
Query: 311 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH------ATCNAVSFSSDCKLM 364
+ + + + DR V ++ + G+ L +L+ H A N S + +
Sbjct: 312 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371
Query: 365 ASASEDSTVALWEL 378
A+ S D +W+
Sbjct: 372 ATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.3 bits (134), Expect = 2e-09
Identities = 53/348 (15%), Positives = 117/348 (33%), Gaps = 45/348 (12%)
Query: 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG 75
H + V V F L G +++ V+ SAA+
Sbjct: 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE-------N 111
Query: 76 LNKVISQGRDGTVKC----WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131
LN S D ++ D + + L + + + +++ + +
Sbjct: 112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 171
Query: 132 PKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQL------SEVEI 185
+ G T + D + S + + G+ + V +
Sbjct: 172 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231
Query: 186 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245
WD T RL + G G +V + + ++ V ++G D S+ +W
Sbjct: 232 WDSETGFLVERLDSENE--------SGTGHKDSVYSVVFTRDGQSV--VSGSLDRSVKLW 281
Query: 246 DIRNPGIP-----------LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 294
+++N H + VL ++ ++ +SG D+ ++ ++ +
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK--S 339
Query: 295 GSCVIKKEINLER----PGISGTSIRPDSKIAATAGWDRRVRIYNYRK 338
G+ ++ + + +G+S+ P+ + AT D + RI+ Y+K
Sbjct: 340 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA------ 61
GH+ SV V F + + +G+ +++W+ S S ++
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303
Query: 62 ----AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96
++SVAT + ++S +D V WD ++G
Sbjct: 304 YIGHKDFVLSVATTQND--EYILSGSKDRGVLFWDKKSG 340
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 6e-04
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 317 PDSKIAATAGWDRRVRIYNYRKG-------SALAILKYHHATCNAVSFSSDCKLMASASE 369
D K A DR VR+++ G S H + +V F+ D + + S S
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274
Query: 370 DSTVALWELYPPH 382
D +V LW L +
Sbjct: 275 DRSVKLWNLQNAN 287
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 78.0 bits (190), Expect = 2e-16
Identities = 41/364 (11%), Positives = 98/364 (26%), Gaps = 19/364 (5%)
Query: 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV 79
++ +++ + + E+ I++ ++ V + + V P N++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD--SNRI 66
Query: 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYERE 139
++ G D W ++ + + + P
Sbjct: 67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR----WAPNEKKFAVGSGSRVISIC 122
Query: 140 VGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLH 198
E + +C + ++ +A + I+ E
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD-FKCRIFSAYIKEVEERPAP 181
Query: 199 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 258
P + S V D ++ + D T
Sbjct: 182 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 241
Query: 259 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 318
L + I ES ++ G D VL+ D + G +++ +S R
Sbjct: 242 ETLPLLAVTFITESSL--VAAGHDCFPVLFTYDSAAGKLSFGGRLDVP----KQSSQRGL 295
Query: 319 SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSD----CKLMASASEDSTVA 374
+ D++ A + H + + +S S C + D ++
Sbjct: 296 TARERFQNLDKKASSEGSAAAGA-GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 354
Query: 375 LWEL 378
+W++
Sbjct: 355 IWDV 358
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.4 bits (134), Expect = 2e-09
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 310 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA--LAILKYHHATCNAVSFSSDCKLMASA 367
IS + D A + V IY + LK H+ V ++ D + +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 368 SEDSTVALWELYPPH 382
D +W L
Sbjct: 70 GTDRNAYVWTLKGRT 84
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.1 bits (102), Expect = 2e-05
Identities = 40/344 (11%), Positives = 79/344 (22%), Gaps = 20/344 (5%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
V L+ H VT V + + T +W + +
Sbjct: 41 WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC 100
Query: 68 VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK 127
V P+ V S + E N K L + + N+
Sbjct: 101 VRWAPNEKKFAVGSG--SRVISICYFE----QENDWWVCKHIKKPIRSTVLSLDWHPNSV 154
Query: 128 QANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWD 187
++ + + + ++ +
Sbjct: 155 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 214
Query: 188 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247
C + + L +++A D +++
Sbjct: 215 RVA---WVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTY 271
Query: 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 307
+ L+ L+ S D+K + +L +
Sbjct: 272 DSAAGKLS-FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG-----AGLDSLHK 325
Query: 308 PGISGTSIRPDSKIA----ATAGWDRRVRIYNYRKG-SALAILK 346
+S S+ K T G D + I++ R SAL LK
Sbjct: 326 NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLK 369
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.7 bits (101), Expect = 2e-05
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 260 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 319
+EP+ C + ++ + ++ +Y V E+ ++G PDS
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKS--GNKWVQVHELKEHNGQVTGVDWAPDS 63
Query: 320 KIAATAGWDRRVRIYNY 336
T G DR ++
Sbjct: 64 NRIVTCGTDRNAYVWTL 80
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.3 bits (152), Expect = 1e-11
Identities = 47/384 (12%), Positives = 111/384 (28%), Gaps = 56/384 (14%)
Query: 4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
R VL+GH V C + +G+ L++W V + + + H+
Sbjct: 2 RRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--G 58
Query: 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123
G+ S +I + + N ++ + ++
Sbjct: 59 GVWSSQMRDNI-------------IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 105
Query: 124 ANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEV 183
+ + +D D + + V+G V
Sbjct: 106 HEKRVVSGSRDAT------LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV 159
Query: 184 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243
++WD T L ++ V++G D SI
Sbjct: 160 KVWDPETETCLHTLQGHTNRVYSLQFDGIH-------------------VVSGSLDTSIR 200
Query: 244 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI 303
VWD+ + + H + + ++ +SG AD + ++++ ++
Sbjct: 201 VWDVETGN-CIHTLTGHQSLTSGMELKDNIL--VSGNADSTVKIWDIKTGQCLQTLQGPN 257
Query: 304 NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK-----YHHATCNAVSFS 358
+ ++ + T+ D V++++ + G + L + S
Sbjct: 258 KHQSAVTC---LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314
Query: 359 SDCKLMASASEDST----VALWEL 378
+ + A S + T + + +
Sbjct: 315 NTKLVCAVGSRNGTEETKLLVLDF 338
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.001
Identities = 24/147 (16%), Positives = 54/147 (36%), Gaps = 11/147 (7%)
Query: 236 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG 295
G D ++ VWDI + + +SG D + +++ + T
Sbjct: 113 GSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC 169
Query: 296 SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAV 355
L+ S++ D + D +R+++ G+ + L H + + +
Sbjct: 170 LHT------LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 223
Query: 356 SFSSDCKLMASASEDSTVALWELYPPH 382
+ ++ S + DSTV +W++
Sbjct: 224 ELKDN--ILVSGNADSTVKIWDIKTGQ 248
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.3 bits (144), Expect = 1e-10
Identities = 39/391 (9%), Positives = 90/391 (23%), Gaps = 70/391 (17%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HRTVSSSWVHSAAHG 64
+ H A + V + + G L++WD S +VH +
Sbjct: 7 ANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64
Query: 65 IVSVATG---PSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE 121
V V + L V + G + + I
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE------------------------- 99
Query: 122 PYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLS 181
D ++ + E +D K S + + + +
Sbjct: 100 ------------DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-G 146
Query: 182 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 241
IW + + + + Q + G+ +G+
Sbjct: 147 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGT 206
Query: 242 ILVWD-----IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIV---------- 286
+ + + +M + + + +
Sbjct: 207 VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 266
Query: 287 --LYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI 344
+ +L T S + S + +AGWD ++R ++ + +
Sbjct: 267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT 326
Query: 345 LKYHH----ATCNAVSFSSDCKLMASASEDS 371
L H + ++ +A
Sbjct: 327 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 3e-04
Identities = 40/362 (11%), Positives = 97/362 (26%), Gaps = 84/362 (23%)
Query: 52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY 111
T ++ H A I SV+ + +S DG +K WD + + +
Sbjct: 6 TANAGKAHDAD--IFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS---- 55
Query: 112 HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPK 171
K +++ + + +
Sbjct: 56 -------------------------------------HFVHKSGLHHVDVLQAIERDAFE 78
Query: 172 YMAVA-GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF 230
VA ++ + + + ++ S + A++ +
Sbjct: 79 LCLVATTSFSGDLLFYRITREDETKKVIFEK--LDLLDSDMKKHSFWALKWGASNDRLLS 136
Query: 231 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL---------------SIDESCNG 275
++A G+ +W ++ ++ P L L S+D S G
Sbjct: 137 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG 196
Query: 276 GI-SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP------------DSKIA 322
I +G + + + L + + ++ S S++ +
Sbjct: 197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 256
Query: 323 ATAGWDRRVRIYNY------RKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376
++ A H + ++SF+ + + SA D + W
Sbjct: 257 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316
Query: 377 EL 378
++
Sbjct: 317 DV 318
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.9 bits (86), Expect = 0.002
Identities = 34/344 (9%), Positives = 85/344 (24%), Gaps = 45/344 (13%)
Query: 17 HRASVTDVCFHQTKPILFA-GTTGGELRIWDTVQHRTVSSSWVHSAA--------HGIVS 67
H + + + L A + G+L + + H +
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 68 VATGPS---IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA 124
+ G S + +++++ GT W + S V+ P
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA--DESNSLTLNWSPTLELQGTVESPMT 182
Query: 125 NAKQAN--------------EPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGP 170
++ A E+ + + I V
Sbjct: 183 PSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242
Query: 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF 230
+ + L E R+ S + + + S +
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS-QASLGEFAHSSWVMSLSFNDSG 301
Query: 231 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 290
+ + DG + WD++ +T + +H + + + I+ +
Sbjct: 302 ETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIE---------------EDILAVDE 345
Query: 291 DHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 334
+ + ++ + G ++ DR +R +
Sbjct: 346 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 389
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.1 bits (141), Expect = 2e-10
Identities = 45/372 (12%), Positives = 98/372 (26%), Gaps = 54/372 (14%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG--IVSV 68
V + + + ++D+ +K +L + G L ++ + + + S + ++
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYK-FDIQAKNVDLLQSLRYKHPLLCC 62
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
+ I G G S + N + A
Sbjct: 63 NFIDNTD--LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120
Query: 129 ANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDL 188
+ R G+ V +S + +I + + S+V+ + L
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN---SQVQWFRL 177
Query: 189 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248
E + G + A LP + +G+ DG + V
Sbjct: 178 PLCEDDNGTIEE----------SGLKYQIRDVALLPKEQEGYA---CSSIDGRVAVEFFD 224
Query: 249 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 308
+ G + K ++ L + + + I
Sbjct: 225 DQGDDYNSSKRFAFR------------------CHRLNLKDTNLAYPVNSI--------- 257
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368
P K TAG D + +N + + + + V + ++ A+
Sbjct: 258 -----EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-SVVKIACSDNILCLAT 311
Query: 369 EDSTVALWELYP 380
D T
Sbjct: 312 SDDTFKTNAAID 323
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (141), Expect = 2e-10
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 317 PDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 376
K + G D + + G+++ K ++ + S D K + + S D ++
Sbjct: 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Query: 377 EL 378
E+
Sbjct: 334 EV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 7e-06
Identities = 37/307 (12%), Positives = 73/307 (23%), Gaps = 24/307 (7%)
Query: 3 KRPPPPDPVAVLR--GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSW 57
P P + H V V ++ G G +++WD VS
Sbjct: 34 IGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLD 92
Query: 58 VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS 117
+ + I S P +I G T+ WD+ LT + + +S
Sbjct: 93 CLNRDNYIRSCKLLPDG--CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 150
Query: 118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAG 177
+ + D + G +
Sbjct: 151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Query: 178 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN----- 232
+ ++ + + L G + + +
Sbjct: 211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS 270
Query: 233 ---------VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ 283
++ +D + W G + K VL I ++G D+
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSK-ESSSVLSCDISVDDKYIVTGSGDK 328
Query: 284 KIVLYNL 290
K +Y +
Sbjct: 329 KATVYEV 335
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.3 bits (136), Expect = 7e-10
Identities = 34/289 (11%), Positives = 81/289 (28%), Gaps = 13/289 (4%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----- 62
+ + + GH +T + + L +G+ G + W + S+ + S
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ 58
Query: 63 --HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
I T G+ K + + + +N + S+ + V+
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118
Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQL 180
+ + E + +
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178
Query: 181 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 240
+ + + + +R + S A + + + + G D
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA-TGSLDT 237
Query: 241 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 289
+I ++ ++ P + A+ H + V L + + +S GAD I +N
Sbjct: 238 NIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 9e-07
Identities = 31/305 (10%), Positives = 80/305 (26%), Gaps = 39/305 (12%)
Query: 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
++ +N +IS DG + W + + + SL +
Sbjct: 18 ALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIV-----------SLDNSKAQEYSSISWD 66
Query: 133 KDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 192
+ + + +N F + + + G+ + V + +A
Sbjct: 67 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126
Query: 193 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252
++ + N + + V L + + + ++ + + I
Sbjct: 127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186
Query: 253 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 312
L ++ I+ +
Sbjct: 187 LLYDLQSRE--------------------------VKTSRWAFRTSKINAISWKPAEKGA 220
Query: 313 TSIRPDSKIAATAGWDRRVRIYNYRKGSA-LAILKYHHATCNAVSFSSDCKLMASASEDS 371
+ + AT D + IY+ ++ + L H N + + + L S+ D+
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTL-VSSGADA 279
Query: 372 TVALW 376
+ W
Sbjct: 280 CIKRW 284
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.3 bits (131), Expect = 4e-09
Identities = 51/366 (13%), Positives = 107/366 (29%), Gaps = 22/366 (6%)
Query: 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG 71
LRGH SV C + G +R++D++ + + H G+ ++
Sbjct: 6 TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHD--GGVWALKYA 62
Query: 72 PSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131
++S D TV+ WDI+ G + T + + N
Sbjct: 63 HG---GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119
Query: 132 PKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTA 191
++ +V + + + +S ++ +
Sbjct: 120 LH-VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178
Query: 192 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251
T + + + G + Y ++ D +I +WD+ N
Sbjct: 179 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIY----DHERKRCISASMDTTIRIWDLENGE 234
Query: 252 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311
+ T L D+ + ++ + +K +
Sbjct: 235 LMYTLQGHTALVGLLRLSDKFLVSAAAD--------GSIRGWDANDYSRKFSYHHTNLSA 286
Query: 312 GTSIRPDSKIAATAGWDRRVRIYNYRKGSAL-AILKYHHATCNAVSFSSDCKLMASASED 370
T+ I + G + + IYN R G + A + +V+F L+A+ +D
Sbjct: 287 ITTFYVSDNILVS-GSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKD 344
Query: 371 STVALW 376
L
Sbjct: 345 GQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 3e-06
Identities = 22/315 (6%), Positives = 67/315 (21%), Gaps = 35/315 (11%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
+ L GH V + + ++ + + + + + + +
Sbjct: 45 FLLQLSGHDGGVWALKYAHGGILV---SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 101
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHF---CKLSLVKEPYANA 126
+ +++ RD T+ W + + V +
Sbjct: 102 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161
Query: 127 KQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIW 186
V + D + + I+ + +
Sbjct: 162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM 221
Query: 187 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV--------------- 231
D + + + G +
Sbjct: 222 DTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH 281
Query: 232 -------------NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS 278
N+L + ++++R+ + + + + ++ +
Sbjct: 282 TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAA 340
Query: 279 GGADQKIVLYNLDHS 293
D + L LD S
Sbjct: 341 VEKDGQSFLEILDFS 355
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 2e-08
Identities = 50/310 (16%), Positives = 95/310 (30%), Gaps = 51/310 (16%)
Query: 77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY 136
K++S RD T+K WD + + H Q +E
Sbjct: 26 QKIVSGLRDNTIKIWDKNTLEC-------KRILTGH--------TGSVLCLQYDERVIIT 70
Query: 137 EREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR 196
D + + M V + + +WD+ + T
Sbjct: 71 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130
Query: 197 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 256
+ + Y+ S S D +I VW+ +
Sbjct: 131 RRVLVGHRAAVN------VVDFDDKYIVSASG----------DRTIKVWNTST-CEFVRT 173
Query: 257 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 316
+ H + CL + +SG +D I L++++ V++ L R IR
Sbjct: 174 LNGHKRGIACLQYRDRLV--VSGSSDNTIRLWDIECGACLRVLEGHEELVRC------IR 225
Query: 317 PDSKIAATAGWDRRVRIYNYRKG---------SALAILKYHHATCNAVSFSSDCKLMASA 367
D+K + +D ++++++ L L H + F D + S+
Sbjct: 226 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS 283
Query: 368 SEDSTVALWE 377
S D T+ +W+
Sbjct: 284 SHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 6e-05
Identities = 41/326 (12%), Positives = 83/326 (25%), Gaps = 44/326 (13%)
Query: 14 LRGHRASVTDV-CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
+ + V C + +G ++IWD H+
Sbjct: 8 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHT------------ 55
Query: 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
G+V C + + + S + L + +
Sbjct: 56 -------------GSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 102
Query: 133 KDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 192
+ + ++ D V + ++ D
Sbjct: 103 FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD----- 157
Query: 193 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252
T N+ + G +A Y V++G D +I +WDI
Sbjct: 158 -RTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR------LVVSGSSDNTIRLWDIECGAC 210
Query: 253 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER-PGIS 311
+ L I +SG D KI +++L + + L S
Sbjct: 211 L---RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 267
Query: 312 G--TSIRPDSKIAATAGWDRRVRIYN 335
G ++ D ++ D + I++
Sbjct: 268 GRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 2e-04
Identities = 6/52 (11%), Positives = 18/52 (34%)
Query: 313 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM 364
++ D + + D ++I++ IL H + + + +
Sbjct: 19 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 70
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.5 bits (124), Expect = 3e-08
Identities = 29/344 (8%), Positives = 82/344 (23%), Gaps = 21/344 (6%)
Query: 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89
+ + A +L + DT + + A + P G + + ++
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLV 59
Query: 90 CWDIENG---GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT 146
D+ G G + + S LS + A + + + V
Sbjct: 60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119
Query: 147 DSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP 206
+ + ++ + D S
Sbjct: 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET 179
Query: 207 NFSSKGRGM------CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 260
+ + + + +L D+ + + +++
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239
Query: 261 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK 320
+++ + GA + ++L+ + + K + L ++ D
Sbjct: 240 DVFYFSTAVNP--AKTRAFGAYNVLESFDLE--KNASI--KRVPLPH-SYYSVNVSTDGS 292
Query: 321 IAATAGWDRRVRIYNYRKGSALAILKY----HHATCNAVSFSSD 360
G + Y+ + + + F+ D
Sbjct: 293 TVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.5 bits (121), Expect = 5e-08
Identities = 40/323 (12%), Positives = 76/323 (23%), Gaps = 33/323 (10%)
Query: 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
V GH ++T + LF+ G + WD + + + A I + T
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWD-ISTGISNRVFPDVHATMITGIKTTS 65
Query: 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
L D +K G+ S+ ++ K +S A A
Sbjct: 66 KGDLFT---VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 133 KDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 192
K + A VA +
Sbjct: 123 AIY--------------SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 168
Query: 193 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252
+ + A+L + Q + + L
Sbjct: 169 SVSEVKTIVHPAEITSV-----AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 223
Query: 253 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 312
V P +G D ++++N++ S
Sbjct: 224 TAKVACVSWSPD--------NVRLATGSLDNSVIVWNMN--KPSDHPIIIKGAHAMSSVN 273
Query: 313 TSIRPDSKIAATAGWDRRVRIYN 335
+ I + +AG D ++ +N
Sbjct: 274 SVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.7 bits (111), Expect = 9e-07
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 317 PDSKIAATAGWDRRVRIYNYRKGSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVA 374
PD+ AT D V ++N K S I+ H + + + SA +DS +
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293
Query: 375 LWEL 378
W +
Sbjct: 294 FWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.3 bits (97), Expect = 5e-05
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 339 GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378
GS + H+ A+S S+D K + SA + + W++
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 41
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.0 bits (86), Expect = 0.001
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC-NAVSFSSDCKLMASA 367
I+ S D K +A + + ++ G + + HAT + +S L +
Sbjct: 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 73
Query: 368 SEDSTVALW 376
+D +
Sbjct: 74 WDDHLKVVP 82
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 50.5 bits (119), Expect = 1e-07
Identities = 28/335 (8%), Positives = 66/335 (19%), Gaps = 22/335 (6%)
Query: 26 FHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85
+ L + D S + G + P +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF-GPGTAMMAPD-NRTAYVLNNHY 61
Query: 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETV 144
G + D++ + + +L+ S P P
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 145 DTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQL-----SEVEIWDLNTAERCTRLHQ 199
+ + + + + M A + ++ D+ T + L
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181
Query: 200 NSCGGSPNFSSKGRGMCMAVQ--------AYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251
+ + + + L D++
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241
Query: 252 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311
E I G ++ D + K NL+
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKY---DLKQRKLI--KAANLDH-TYY 295
Query: 312 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK 346
+ G + ++N + +K
Sbjct: 296 CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.9 bits (117), Expect = 2e-07
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 314 SIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH-ATCNAVSFSSDCKLMASASEDST 372
+ PD A+A D+ ++I+N + + + + S S +
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304
Query: 373 VALWEL 378
+
Sbjct: 305 INFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.0 bits (112), Expect = 9e-07
Identities = 26/284 (9%), Positives = 70/284 (24%), Gaps = 20/284 (7%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
+ H T + +G G +RIWDT Q + + + + +
Sbjct: 48 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 107
Query: 68 VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK 127
++ + +GR+ + + +N + +
Sbjct: 108 ISWDSESKRIAAVGEGRERFGHVFLFDT----------GTSNGNLTGQARAMNSVDFKPS 157
Query: 128 QANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWD 187
+ + + + + V + + + +++
Sbjct: 158 RPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 217
Query: 188 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247
+ +S + S + + D +I +W++
Sbjct: 218 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI----------ASASADKTIKIWNV 267
Query: 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 291
+ T L I + +S A+ I N +
Sbjct: 268 ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.7 bits (101), Expect = 2e-05
Identities = 10/77 (12%), Positives = 13/77 (16%), Gaps = 1/77 (1%)
Query: 306 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMA 365
R P V + I H S A
Sbjct: 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA 74
Query: 366 SASEDSTVALWELYPPH 382
S V +W+
Sbjct: 75 SGDVHGNVRIWDTTQTT 91
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 46.8 bits (109), Expect = 2e-06
Identities = 34/357 (9%), Positives = 77/357 (21%), Gaps = 41/357 (11%)
Query: 33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG--IVSVATGPSIGLNKVISQGRDGTVKC 90
L A + G+ I D VS ++V I V G + + +
Sbjct: 17 LIAFVSRGQAFIQD------VSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGI 70
Query: 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC 150
+D G + + V + E+
Sbjct: 71 YDYRTG--------KAEKFEENLGN---VFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119
Query: 151 DSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS 210
E +R I D ++ +++A + A + + +S
Sbjct: 120 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS 179
Query: 211 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN------PGIPLTAMKVHLEPV 264
+ + D + +
Sbjct: 180 HDYAPAFDADSKN---------LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSP 230
Query: 265 LCLSIDESCNGGISGG---ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 321
+ +G D ++ G + + S +
Sbjct: 231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY 290
Query: 322 AATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378
A + Y+ + + + S+D K + +D + + L
Sbjct: 291 YQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.5 bits (90), Expect = 5e-04
Identities = 23/340 (6%), Positives = 69/340 (20%), Gaps = 29/340 (8%)
Query: 12 AVLRGHRASVTDVCFHQ-TKPILFAGTTGGE-LRIWDT----VQHRTVSSSWVHSAAHGI 65
+ + V TK GT G+ L I+D + + V +
Sbjct: 36 VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR 95
Query: 66 VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN 125
+ ++++ + + I + +
Sbjct: 96 NGKFAVVANDRFEIMTVDLETGKPTVIERS------REAMITDFTISDNSRFIAYGFPLK 149
Query: 126 AKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEI 185
+ + D + + + K + + S
Sbjct: 150 HGETDGYVMQAIH----VYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYR-SLDPS 204
Query: 186 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245
D + S + + S +
Sbjct: 205 PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL----NDMYKRSSPIN 260
Query: 246 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL 305
+ ++ + E ++ Y++ +++
Sbjct: 261 VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK--------TRKVTE 312
Query: 306 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL 345
+ ++ + D K D ++ + K +
Sbjct: 313 VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 3e-06
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 317 PDSKIAATAGWDRRVRIYNYRKGSALAILKYH--HATCNAVSFS-SDCKLMASASEDSTV 373
DS+ AT G D +R+++ + V + + S S D T+
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320
Query: 374 ALWEL 378
+EL
Sbjct: 321 NFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 9e-05
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84
+R+WD + V + G V + G ++IS
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSL 316
Query: 85 DGTVKCWDI 93
DGT+ +++
Sbjct: 317 DGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 1e-04
Identities = 38/341 (11%), Positives = 86/341 (25%), Gaps = 30/341 (8%)
Query: 3 KRPPPPDPVAVLRGHRASVTDVCFH-QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA 61
K PP P R T + + T I + +R D +
Sbjct: 6 KEIIPPQP----STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH 61
Query: 62 AHGIV-SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIK-TNSYHFCKLSLV 119
+V +V P G + S G V W S++ + +K +S +
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQ 179
+ + G + DS E + + I+ + + M
Sbjct: 122 S--WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 179
Query: 180 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 239
++ + + + +
Sbjct: 180 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC------- 232
Query: 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG--ISGGADQKIVLYNLDHSTGSC 297
+D ++ + + + GAD I ++++ +T C
Sbjct: 233 -----FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV--TTSKC 285
Query: 298 VIKKEINLERPGISGTSIR---PDSKIAATAGWDRRVRIYN 335
V ++ L++ + + + + D + Y
Sbjct: 286 V--QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.4 bits (82), Expect = 0.004
Identities = 44/294 (14%), Positives = 78/294 (26%), Gaps = 33/294 (11%)
Query: 9 DPVAVLRGHRAS-VTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG- 64
PV GH +S VT V F K L +G G++ +W + +S V+ +
Sbjct: 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ 112
Query: 65 -----IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
I ++ V+ +GRD L V
Sbjct: 113 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISW-----------------DSGNSLGEV 155
Query: 120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQ 179
+ + R + D + + +G V
Sbjct: 156 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP 215
Query: 180 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 239
S + + + + + S + + A SQ F D
Sbjct: 216 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA---TVGAD 272
Query: 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG---ISGGADQKIVLYNL 290
+I VWD+ + + + + + G IS D + Y L
Sbjct: 273 ATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.9 bits (107), Expect = 4e-06
Identities = 44/371 (11%), Positives = 89/371 (23%), Gaps = 41/371 (11%)
Query: 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
P PD R V D + + D R + + +
Sbjct: 9 PAPD------ARRVYVNDPA---------HFAAVTQQFVIDGEAGRVIGMIDGGFLPNPV 53
Query: 66 VS-----VATGPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFC 114
V+ +A S +++ R V+ +D P + T +
Sbjct: 54 VADDGSFIAH-ASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 112
Query: 115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMA 174
K + E + D + +
Sbjct: 113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAK 172
Query: 175 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV---QAYLPSKSQGFV 231
VA EI P +S K + + + S G
Sbjct: 173 VAFGTEGTPEITHTEV----FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA 228
Query: 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 291
L E + + H + + + A + +V+ D
Sbjct: 229 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL--D 286
Query: 292 HSTGSCVIKKEINLERPGISGTSIRPDSK--IAATAGWDRRVRIYNYRKGSALAILKYHH 349
TG + + + I ++ D K + A + D+ + I++ G L +
Sbjct: 287 AKTGERL--AKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 343
Query: 350 ATCNAVSFSSD 360
++ +
Sbjct: 344 HGPQVITTADM 354
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.2 bits (90), Expect = 6e-04
Identities = 18/231 (7%), Positives = 48/231 (20%), Gaps = 43/231 (18%)
Query: 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG 229
+ S + A SC P +
Sbjct: 135 SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH-----------------IHPGAAAT 177
Query: 230 FVNVLAGYEDGSILVWDIRNPGIPL---TAMKVHLEPVLCLSIDESCNGGISGGADQKIV 286
G S+ D+ A + + + G + I+
Sbjct: 178 HY---LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSIL 234
Query: 287 LYNLDHSTGSCVIK--------KEINLERPGISGTSIRPDSKIAATAGWDR--------- 329
++ + + K N G + ++ +
Sbjct: 235 QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAE 294
Query: 330 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCK--LMASASEDSTVALWEL 378
G + + +A+ + D A+++ + +++
Sbjct: 295 NTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 383 | |||
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.95 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.93 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.92 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.92 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.91 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.89 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.89 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.89 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.83 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.83 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.81 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.77 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.75 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.73 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.72 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.72 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.69 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.69 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.69 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.67 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.6 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.55 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.53 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.4 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.13 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.99 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.87 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.76 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.57 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.55 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.53 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.43 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.43 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.27 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.02 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.73 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.71 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.7 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.48 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.44 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.28 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.15 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.97 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 96.32 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.22 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.18 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 95.82 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 94.47 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 93.94 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.16 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 91.7 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 89.97 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 87.73 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 85.36 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 84.76 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 83.19 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 81.23 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 80.69 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3e-38 Score=284.65 Aligned_cols=295 Identities=18% Similarity=0.271 Sum_probs=217.4
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
++..+|+||++.|++|+|+|++++|+|||.||+|+|||+.+++.+..+..|. ..+.++++.+ ++..+++++.|+++
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~--~~v~~v~~~~--~~~~l~~~~~d~~i 121 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAYAP--SGNYVACGGLDNIC 121 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSC--SCEEEEEECT--TSSEEEEEETTCCE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEeccc--ccEEeeEeec--cceeeeeeccccee
Confidence 4567899999999999999999999999999999999999888776665544 4688899988 46889999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++|+.............+..+.. ... .. ....
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~------------------------~~-~~~~ 153 (340)
T d1tbga_ 122 SIYNLKTREGNVRVSRELAGHTG-----------------------YLS------------------------CC-RFLD 153 (340)
T ss_dssp EEEESSSSCSCCCEEEEECCCSS-----------------------CEE------------------------EE-EEEE
T ss_pred ecccccccccccccceecccccc-----------------------ccc------------------------cc-cccc
Confidence 99998754321110000000000 000 00 0000
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
+ . .......+...+.|+.............. ....+ ..+.+. ...+++|+.|+.|++||++
T Consensus 154 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~---~~~~~~----~~~~~~~~~d~~v~i~d~~ 214 (340)
T d1tbga_ 154 D-N-QIVTSSGDTTCALWDIETGQQTTTFTGHT----------GDVMS---LSLAPD----TRLFVSGACDASAKLWDVR 214 (340)
T ss_dssp T-T-EEEEEETTTEEEEEETTTTEEEEEEECCS----------SCEEE---EEECTT----SSEEEEEETTTEEEEEETT
T ss_pred c-c-ccccccccccccccccccccccccccccc----------eeEee---eccccc----cceeEEeecCceEEEEECC
Confidence 0 1 11223345567777766655433322110 01111 112221 2357889999999999998
Q ss_pred CCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC
Q 016769 249 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 328 (383)
Q Consensus 249 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d 328 (383)
+ ..++..+..|..+|.+++|++++..+++++.|+.|++||+.... .........+...+.+++|+|++++|++|+.|
T Consensus 215 ~-~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d 291 (340)
T d1tbga_ 215 E-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291 (340)
T ss_dssp T-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECSSSCEEEEEETT
T ss_pred C-CcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc--cccccccccccCceEEEEECCCCCEEEEEECC
Confidence 7 45577788999999999999999999999999999999997543 22222233445679999999999999999999
Q ss_pred CcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 329 RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 329 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
|+|++||+.+++.+.++.+|..+|.+++|+||+++|||||.||.|+|||
T Consensus 292 g~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9e-38 Score=277.64 Aligned_cols=291 Identities=17% Similarity=0.290 Sum_probs=221.0
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
+++.++|+||+++|++|+|+|++++|+|||.||+|+|||+.+++.+..+..|. ..+.++.+.+ ++..+++++.+++
T Consensus 7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~--~~V~~~~~~~--~~~~~~~~~~~~~ 82 (317)
T d1vyhc1 7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT--DSVQDISFDH--SGKLLASCSADMT 82 (317)
T ss_dssp SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS--SCEEEEEECT--TSSEEEEEETTSC
T ss_pred CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCC--CcEEEEeeec--ccccccccccccc
Confidence 34567999999999999999999999999999999999999888777665554 4578888888 4678899999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
+.+|+........ .... .. . ......+.+
T Consensus 83 ~~~~~~~~~~~~~----~~~~-------------~~---------~-------------------------~~~~~~~~~ 111 (317)
T d1vyhc1 83 IKLWDFQGFECIR----TMHG-------------HD---------H-------------------------NVSSVSIMP 111 (317)
T ss_dssp CCEEETTSSCEEE----CCCC-------------CS---------S-------------------------CEEEEEECS
T ss_pred ccccccccccccc----cccc-------------cc---------c-------------------------cceeeeccC
Confidence 9999976542100 0000 00 0 000011122
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
++. .+ ++++.++.+++||+++++.+..+..+. ....++ .+.+. ...+++++.|+.|++|++
T Consensus 112 ~~~-~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~----------~~~~~~---~~~~~----~~~l~~~~~d~~v~~~~~ 172 (317)
T d1vyhc1 112 NGD-HI-VSASRDKTIKMWEVQTGYCVKTFTGHR----------EWVRMV---RPNQD----GTLIASCSNDQTVRVWVV 172 (317)
T ss_dssp SSS-EE-EEEETTSEEEEEETTTCCEEEEEECCS----------SCEEEE---EECTT----SSEEEEEETTSCEEEEET
T ss_pred CCc-eE-EeeccCcceeEeecccceeeeEEccCC----------Ccceee---ecccC----CCEEEEEeCCCeEEEEee
Confidence 332 33 445668999999999988776664311 111121 23332 235889999999999999
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCC--------------------CceEEEEcCCcEEEEEccCCCCeeEEeeeeecCC
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESC--------------------NGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 307 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~--------------------~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~ 307 (383)
++. .....+..|...+.++.+.+.. ..+++++.|+.|++||+.... .. ..+..+.
T Consensus 173 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~--~~~~~~~ 247 (317)
T d1vyhc1 173 ATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CL--MTLVGHD 247 (317)
T ss_dssp TTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--EE--EEEECCS
T ss_pred ccc-eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc--EE--EEEeCCC
Confidence 874 4466777888888888886543 246789999999999987542 22 2344567
Q ss_pred CCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 308 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 308 ~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
..+.+++++|++++|++++.||+|++||+.+++.+..+.+|.+.|.+++|+|++++||+|+.|++|+|||
T Consensus 248 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.2e-37 Score=279.61 Aligned_cols=284 Identities=14% Similarity=0.226 Sum_probs=208.8
Q ss_pred ecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccc---cccccceeeeeeecCCCCcceeEecccCCeEEEee
Q 016769 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd 92 (383)
+|...|++|+|+|+|++|+||+ ||.|+|||+.+......+. ...+...+.+++++| +++.|++++.|++|++||
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~--dg~~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC--CCCEEEEeeccccccccc
Confidence 8999999999999999999998 8999999987654332221 112234588999998 468899999999999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
+..... ... ..+.. .. .. .....+.+++ .
T Consensus 126 ~~~~~~----~~~----------~~~~~-~~---------~~-------------------------v~~~~~~~~~-~- 154 (337)
T d1gxra_ 126 LAAPTP----RIK----------AELTS-SA---------PA-------------------------CYALAISPDS-K- 154 (337)
T ss_dssp CCCC------EEE----------EEEEC-SS---------SC-------------------------EEEEEECTTS-S-
T ss_pred cccccc----ccc----------ccccc-cc---------cc-------------------------cccccccccc-c-
Confidence 865421 000 00000 00 00 0001122333 2
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
++++++.++.+++||+++++.......+ ...+.++ .+.+. ...+++|+.|+.|++||+++..
T Consensus 155 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~----------~~~v~~l---~~s~~----~~~~~~~~~d~~v~i~d~~~~~- 216 (337)
T d1gxra_ 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGH----------TDGASCI---DISND----GTKLWTGGLDNTVRSWDLREGR- 216 (337)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCC----------SSCEEEE---EECTT----SSEEEEEETTSEEEEEETTTTE-
T ss_pred cccccccccccccccccccccccccccc----------ccccccc---ccccc----ccccccccccccccccccccce-
Confidence 3445567889999999998765544321 1122232 23332 2257889999999999998743
Q ss_pred ceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEE
Q 016769 253 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 332 (383)
Q Consensus 253 ~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~ 332 (383)
.+..+ .|..+|.++.+++++..+++++.|+.+++||++.... .....+...|.+++|+|++++|++++.||+|+
T Consensus 217 ~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~ 290 (337)
T d1gxra_ 217 QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290 (337)
T ss_dssp EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eeccc-ccccceEEEEEcccccccceecccccccccccccccc-----ccccccccccceEEECCCCCEEEEEeCCCeEE
Confidence 34433 4778999999999999999999999999999975432 12334567899999999999999999999999
Q ss_pred EEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 333 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 333 iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
+||+.+++.+..+ .|...|.+++|+||+++||+|+.|++|+|||+
T Consensus 291 iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 291 AWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 9999999988776 48889999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-36 Score=278.18 Aligned_cols=293 Identities=20% Similarity=0.266 Sum_probs=207.5
Q ss_pred eeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccc----------------cccceeeeeeecCCCCcc
Q 016769 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH----------------SAAHGIVSVATGPSIGLN 77 (383)
Q Consensus 14 l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 77 (383)
..+|++.|+||+|+|||++||||+ |++|+|||+.+++.+..+..+ .....+.+++|++ +++
T Consensus 58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~~~ 134 (388)
T d1erja_ 58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--DGK 134 (388)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT--TSS
T ss_pred eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC--CCC
Confidence 347999999999999999999987 899999999877654433221 1123477889988 468
Q ss_pred eeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCC
Q 016769 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNR 157 (383)
Q Consensus 78 ~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (383)
+|++++.|++|++||...++... .. .... ..+.
T Consensus 135 ~l~s~~~dg~v~i~~~~~~~~~~----~~-------------~~h~---------~~v~--------------------- 167 (388)
T d1erja_ 135 FLATGAEDRLIRIWDIENRKIVM----IL-------------QGHE---------QDIY--------------------- 167 (388)
T ss_dssp EEEEEETTSCEEEEETTTTEEEE----EE-------------CCCS---------SCEE---------------------
T ss_pred cceeccccccccccccccccccc----cc-------------cccc---------cccc---------------------
Confidence 99999999999999987653100 00 0000 0000
Q ss_pred ccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEe
Q 016769 158 SFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 237 (383)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~ 237 (383)
.....+.+. .++.++.++.+++||+++.......... ....+. .+.+. ....+++|+
T Consensus 168 ----~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----------~~~~~~---~~~~~---~~~~l~~~~ 224 (388)
T d1erja_ 168 ----SLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIE-----------DGVTTV---AVSPG---DGKYIAAGS 224 (388)
T ss_dssp ----EEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECS-----------SCEEEE---EECST---TCCEEEEEE
T ss_pred ----ccccccccc--cccccccceeeeeeeccccccccccccc-----------cccccc---cccCC---CCCeEEEEc
Confidence 001112222 2344566889999999987765444321 111111 12222 123588899
Q ss_pred CCCcEEEEeCCCCCCce------eeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEE--------eeee
Q 016769 238 EDGSILVWDIRNPGIPL------TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI--------KKEI 303 (383)
Q Consensus 238 ~dg~i~~wdl~~~~~~~------~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~--------~~~~ 303 (383)
.|+.|++||+++..... .....|..+|.++.|++++..+++++.|+.|++||+......... ....
T Consensus 225 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 304 (388)
T d1erja_ 225 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304 (388)
T ss_dssp TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEE
T ss_pred CCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeec
Confidence 99999999998743211 123467889999999999999999999999999998654321111 1122
Q ss_pred ecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEE------eCCCCEEEEEeCCCcEEEEe
Q 016769 304 NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSF------SSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 304 ~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~------spd~~~las~s~d~~i~~w~ 377 (383)
..+...+.+++|+|++++|++|+.||+|++||+.+++++.++++|.+.|.++++ +||+++|||||.||+|+||+
T Consensus 305 ~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~ 384 (388)
T d1erja_ 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384 (388)
T ss_dssp ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred ccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEe
Confidence 345677999999999999999999999999999999999999999999999974 67999999999999999999
Q ss_pred CC
Q 016769 378 LY 379 (383)
Q Consensus 378 ~~ 379 (383)
+.
T Consensus 385 ~~ 386 (388)
T d1erja_ 385 YK 386 (388)
T ss_dssp EE
T ss_pred ee
Confidence 73
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.8e-35 Score=259.53 Aligned_cols=291 Identities=17% Similarity=0.232 Sum_probs=199.9
Q ss_pred eeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEE
Q 016769 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~ 90 (383)
.+++.||++.|++|+|+|++++|+|||.||+|++||+.++++...+.. .+...+.++.+.++ ..+++++.|+++++
T Consensus 5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~h~~~v~~v~~~~~---g~~~~~~~d~~v~~ 80 (299)
T d1nr0a2 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD-VHATMITGIKTTSK---GDLFTVSWDDHLKV 80 (299)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC-SCSSCEEEEEECTT---SCEEEEETTTEEEE
T ss_pred ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCCcEEEEEeecc---ceeecccceeeEEE
Confidence 578999999999999999999999999999999999988776655421 12345788899883 45788889999999
Q ss_pred eecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCC
Q 016769 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGP 170 (383)
Q Consensus 91 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (383)
|+............. . . .. .......+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~-~---------~-~~-------------------------------------~~~~~~~~s~~g~ 112 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVA-N---------K-LS-------------------------------------SQPLGLAVSADGD 112 (299)
T ss_dssp ECSSSSSSCTTSCCE-E---------E-CS-------------------------------------SCEEEEEECTTSS
T ss_pred eccCCcccccccccc-c---------c-cc-------------------------------------ccccccccccccc
Confidence 998654211100000 0 0 00 0000011223333
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCC
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 250 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~ 250 (383)
++++ + .++.+++|+..... .+... ....++ .+.|+ ...+++|+.|+.|++||+++.
T Consensus 113 -~~~~-~-~~~~i~~~~~~~~~---~~~~~-----------~~~~~~---~~s~~----~~~l~~g~~dg~i~~~d~~~~ 168 (299)
T d1nr0a2 113 -IAVA-A-CYKHIAIYSHGKLT---EVPIS-----------YNSSCV---ALSND----KQFVAVGGQDSKVHVYKLSGA 168 (299)
T ss_dssp -CEEE-E-ESSEEEEEETTEEE---EEECS-----------SCEEEE---EECTT----SCEEEEEETTSEEEEEEEETT
T ss_pred -cccc-c-cccccccccccccc---ccccc-----------cccccc---ccccc----ccccccccccccccccccccc
Confidence 3333 2 24689999854322 11110 011121 24443 235788999999999999864
Q ss_pred CCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCc
Q 016769 251 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 330 (383)
Q Consensus 251 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~ 330 (383)
.........|..+|.++.+++++..+++++.|+.|++||+...... ........+...|++++|+|++++|++|+.|++
T Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~ 247 (299)
T d1nr0a2 169 SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL-AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247 (299)
T ss_dssp EEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE-SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccceEEEcCCCE
Confidence 4322334568889999999999999999999999999998753211 111223446678999999999999999999999
Q ss_pred EEEEEcCCCce--EEEecccc-cceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 331 VRIYNYRKGSA--LAILKYHH-ATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 331 i~iwd~~~~~~--~~~~~~h~-~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
|++||++++.. ......|. ..+.++. +|++++|++||.|++|++||+.
T Consensus 248 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 248 VIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEEEECC
T ss_pred EEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEEEecc
Confidence 99999987653 23333444 4566665 4677899999999999999983
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.4e-35 Score=261.35 Aligned_cols=327 Identities=19% Similarity=0.288 Sum_probs=212.6
Q ss_pred CCCCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccC
Q 016769 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (383)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (383)
.+.++..+|+||++.|.+ |++++|++|||||.||+|+|||+.+++++..+..|. ..+.++++.+ +.|++++.|
T Consensus 4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~--~~V~~v~~~~----~~l~s~s~D 76 (342)
T d2ovrb2 4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--GGVWSSQMRD----NIIISGSTD 76 (342)
T ss_dssp SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCS--SCEEEEEEET----TEEEEEETT
T ss_pred CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCC--CCEEEEEeCC----Cccccceec
Confidence 456788899999999975 577789999999999999999999888877766654 4577888875 589999999
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
+++++|+........ ..................... .........+....+.... ... ... ......
T Consensus 77 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~~~~~~~~~~~~--~~~---~~~---~~~~~~ 143 (342)
T d2ovrb2 77 RTLKVWNAETGECIH----TLYGHTSTVRCMHLHEKRVVS-GSRDATLRVWDIETGQCLH--VLM---GHV---AAVRCV 143 (342)
T ss_dssp SCEEEEETTTTEEEE----EECCCSSCEEEEEEETTEEEE-EETTSEEEEEESSSCCEEE--EEE---CCS---SCEEEE
T ss_pred cccccccccccccee----cccccceeEeeeecccccccc-cccceeEEEeeccccccee--eee---ccc---ccceee
Confidence 999999987653110 000000000000000000000 0000000000000000000 000 000 000001
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEE
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~w 245 (383)
.... . ..+.+..++.+++||++....+..+..+. ....+ ..++ ...+++|+.||+|++|
T Consensus 144 ~~~~-~-~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~~~~~-----~~~~----~~~l~s~~~dg~i~~~ 202 (342)
T d2ovrb2 144 QYDG-R-RVVSGAYDFMVKVWDPETETCLHTLQGHT----------NRVYS-----LQFD----GIHVVSGSLDTSIRVW 202 (342)
T ss_dssp EECS-S-CEEEEETTSCEEEEEGGGTEEEEEECCCS----------SCEEE-----EEEC----SSEEEEEETTSCEEEE
T ss_pred cccc-c-eeeeecCCCeEEEeecccceeeEEEcCcc----------ccccc-----ccCC----CCEEEEEeCCCeEEEe
Confidence 1111 2 23445667899999998887766654321 11111 1111 1258899999999999
Q ss_pred eCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEE
Q 016769 246 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 325 (383)
Q Consensus 246 dl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~ 325 (383)
|++.. ..+..+..|...+.++.+++ +.+++++.|+.|++||+........+ .....+...+.++.++ ++++++|
T Consensus 203 d~~~~-~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~s~ 276 (342)
T d2ovrb2 203 DVETG-NCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTL-QGPNKHQSAVTCLQFN--KNFVITS 276 (342)
T ss_dssp ETTTC-CEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEE-CSTTSCSSCEEEEEEC--SSEEEEE
T ss_pred ecccc-eeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccc-cccceeeeceeecccC--CCeeEEE
Confidence 99874 45777888999999988876 57899999999999998765432222 1122234456666665 5699999
Q ss_pred eCCCcEEEEEcCCCceEEEe-----cccccceeEEEEeCCCCEEEEEeCCCc----EEEEeCC
Q 016769 326 GWDRRVRIYNYRKGSALAIL-----KYHHATCNAVSFSSDCKLMASASEDST----VALWELY 379 (383)
Q Consensus 326 ~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~v~~spd~~~las~s~d~~----i~~w~~~ 379 (383)
+.||+|++||+++++.+..+ .+|...|++++|+|++.+||+|+.||+ |++||+.
T Consensus 277 s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp ETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred cCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 99999999999999988766 357888999999999999999999996 9999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.2e-33 Score=250.52 Aligned_cols=292 Identities=15% Similarity=0.106 Sum_probs=208.3
Q ss_pred cCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCC
Q 016769 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (383)
Q Consensus 17 H~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~ 96 (383)
+++.+..++++|+|+.|+.++ ++.|.+|++.+......+..|. ..+.+++++| ++++|++|+.|++|++||++++
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~--~~v~~~~~sp--~g~~latg~~dg~i~iwd~~~~ 90 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHS--HQTTVAKTSP--SGYYCASGDVHGNVRIWDTTQT 90 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCS--SCEEEEEECT--TSSEEEEEETTSEEEEEESSST
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCC--CCEEEEEEeC--CCCeEeccccCceEeeeeeecc
Confidence 456777899999999999874 6679999998776665554443 5689999998 4789999999999999999876
Q ss_pred CCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeec
Q 016769 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVA 176 (383)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (383)
.... ...+..+ .. .+ ....+.++++.+++++
T Consensus 91 ~~~~--~~~~~~~----------~~------------~v-------------------------~~v~~s~d~~~l~~~~ 121 (311)
T d1nr0a1 91 THIL--KTTIPVF----------SG------------PV-------------------------KDISWDSESKRIAAVG 121 (311)
T ss_dssp TCCE--EEEEECS----------SS------------CE-------------------------EEEEECTTSCEEEEEE
T ss_pred cccc--ccccccc----------cC------------cc-------------------------cccccccccccccccc
Confidence 4210 0000000 00 00 0012234444333333
Q ss_pred cCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceee
Q 016769 177 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 256 (383)
Q Consensus 177 g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~ 256 (383)
.+.++.+++|++++++....+..+ ...+.++ .|.|+. ...+++|+.|+.|++||+++ ......
T Consensus 122 ~~~~~~~~v~~~~~~~~~~~l~~h----------~~~v~~v---~~~~~~---~~~l~sgs~d~~i~i~d~~~-~~~~~~ 184 (311)
T d1nr0a1 122 EGRERFGHVFLFDTGTSNGNLTGQ----------ARAMNSV---DFKPSR---PFRIISGSDDNTVAIFEGPP-FKFKST 184 (311)
T ss_dssp CCSSCSEEEEETTTCCBCBCCCCC----------SSCEEEE---EECSSS---SCEEEEEETTSCEEEEETTT-BEEEEE
T ss_pred cccccccccccccccccccccccc----------ccccccc---cccccc---eeeecccccccccccccccc-cccccc
Confidence 345677999999988765544321 1222222 244432 22478899999999999987 345667
Q ss_pred eeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEee---eeecCCCCeEEEEECCCCcEEEEEeCCCcEEE
Q 016769 257 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK---EINLERPGISGTSIRPDSKIAATAGWDRRVRI 333 (383)
Q Consensus 257 ~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~---~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~i 333 (383)
+..|..+|.++.+++++..+++++.|+.|++||+...+....+.. ....|...|.+++|+|++++|++|+.||+|+|
T Consensus 185 ~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~i 264 (311)
T d1nr0a1 185 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 264 (311)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEE
Confidence 788999999999999999999999999999999976543322211 11235567999999999999999999999999
Q ss_pred EEcCCCceEEEeccccc-ceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 334 YNYRKGSALAILKYHHA-TCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 334 wd~~~~~~~~~~~~h~~-~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
||+++++.+.++..|.. ....+.+.+++..|++++.||.|++||+.
T Consensus 265 wd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 265 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 99999999988876643 23334455566789999999999999973
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.5e-33 Score=245.31 Aligned_cols=271 Identities=21% Similarity=0.300 Sum_probs=193.7
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
+|+++|+||+++|++|+|+| |+|||.||+|++||+.+... .|. ..+.++.+.+ +..+++++.|+++
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~-----~h~--~~V~~~~~~~---~~~~~s~s~D~~v 69 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHS--NLIVSLDNSK---AQEYSSISWDDTL 69 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEEC-----CCC--SCEEEEECCS---TTCCEEEETTTEE
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCC-----CCC--CCEEEEEecC---CCeEEEEeecccc
Confidence 57899999999999999987 99999999999999876532 232 3577777775 3678999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++|++........ +. ......+
T Consensus 70 ~~w~~~~~~~~~~--------------------~~--------------------------------------~~~~~~~ 91 (287)
T d1pgua2 70 KVNGITKHEFGSQ--------------------PK--------------------------------------VASANND 91 (287)
T ss_dssp EETTEEEEECSSC--------------------EE--------------------------------------EEEECSS
T ss_pred ccccccccccccc--------------------ee--------------------------------------eeeeccC
Confidence 9999754211000 00 0000111
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCC-CcEEEEeC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-GSILVWDI 247 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~d-g~i~~wdl 247 (383)
+ . +++.+. ++.+.+|+..+++.+..+.... .. .+ +.+. +. .+++++.| +.|++|++
T Consensus 92 ~-~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------~~--~~---~~~~---~~-~~~v~~~~~~~v~~~~~ 148 (287)
T d1pgua2 92 G-F-TAVLTN-DDDLLILQSFTGDIIKSVRLNS-----------PG--SA---VSLS---QN-YVAVGLEEGNTIQVFKL 148 (287)
T ss_dssp S-E-EEEEET-TSEEEEEETTTCCEEEEEECSS-----------CE--EE---EEEC---SS-EEEEEETTTSCEEEEET
T ss_pred C-c-eEEEee-cccceeeeccceeeeeeccccc-----------ee--ee---eecc---Cc-ceeeeccccceeeeeec
Confidence 1 2 222333 4568899998888766554211 11 11 2222 12 34555555 57999998
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCC---------
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD--------- 318 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~--------- 318 (383)
............|..++.+++|++++..+++|+.|+.|++||+.... . .......+...+.+++|+|+
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--~-~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 225 (287)
T d1pgua2 149 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE--V-KTSRWAFRTSKINAISWKPAEKGANEEEI 225 (287)
T ss_dssp TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--E-EECCSCCCSSCEEEEEECCCC------CC
T ss_pred cccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccc--c-ccccccccccccceeeecccccccccccC
Confidence 75333222233467789999999999999999999999999987543 1 12234456678999999874
Q ss_pred -CcEEEEEeCCCcEEEEEcCC-CceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 319 -SKIAATAGWDRRVRIYNYRK-GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 319 -~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
+.+|++|+.|++|++||+++ .+.+..+.+|...|.+++|+|++ .|+|+|.|++|++|++
T Consensus 226 ~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp SCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 46899999999999999977 55677788999999999999986 6899999999999996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.8e-33 Score=251.09 Aligned_cols=329 Identities=18% Similarity=0.249 Sum_probs=203.2
Q ss_pred eeeeeecCCce-eeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 11 VAVLRGHRASV-TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 11 ~~~l~gH~~~V-~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
..+|+||++.| +|++ +++++|+|||.||+|+|||+.+++++..+..|. ..+.++++++ ++.|++++.|++++
T Consensus 5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~--~~V~~l~~s~---~~~l~s~s~D~~i~ 77 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGHD--GGVWALKYAH---GGILVSGSTDRTVR 77 (355)
T ss_dssp EEEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEEEEECCS--SCEEEEEEET---TTEEEEEETTCCEE
T ss_pred cEEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEEEEECCC--CCEEEEEEcC---CCEEEEEecccccc
Confidence 56899999886 5555 467899999999999999999888887776664 4588888886 36899999999999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccc-cCCCCccceeccCcccc-------cCcccccc-cc-----
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVD-------TDSLCDSK-ES----- 155 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~----- 155 (383)
+|++........ ......................+.. ..+....+......... ........ ..
T Consensus 78 iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (355)
T d1nexb2 78 VWDIKKGCCTHV--FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 155 (355)
T ss_dssp EEETTTTEEEEE--ECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred cccccccccccc--cccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence 999977642110 0000000000000000000000000 00000111111000000 00000000 00
Q ss_pred --CCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEE
Q 016769 156 --NRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 233 (383)
Q Consensus 156 --~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (383)
......+.....++ . +++.+..++.+++||+++++.+....... ....+. .+.+. ...+
T Consensus 156 ~~~~~~~~v~~~~~~~-~-~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~~~~~~---~~~~~----~~~~ 216 (355)
T d1nexb2 156 VLRGHMASVRTVSGHG-N-IVVSGSYDNTLIVWDVAQMKCLYILSGHT----------DRIYST---IYDHE----RKRC 216 (355)
T ss_dssp EEECCSSCEEEEEEET-T-EEEEEETTSCEEEEETTTTEEEEEECCCS----------SCEEEE---EEETT----TTEE
T ss_pred eeeecccccccccccc-c-eeeeecccceeeeeecccccceeeeeccc----------cccccc---ccccc----ceee
Confidence 00000001111222 2 34456678899999999888665554211 111111 23332 1257
Q ss_pred EEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEE-
Q 016769 234 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG- 312 (383)
Q Consensus 234 ~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~- 312 (383)
++++.|++|++||+++. ..+..+++|..+|.++.+++ ..+++++.|+.|++||++.... .+ ..+...+..
T Consensus 217 ~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~--~~----~~~~~~~~~~ 287 (355)
T d1nexb2 217 ISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR--KF----SYHHTNLSAI 287 (355)
T ss_dssp EEEETTSCEEEEETTTC-CEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCE--EE----EEECTTCCCC
T ss_pred ecccccceEEeeecccc-cccccccccccccccccccc--ceeeeeecccccccccccccce--ec----ccccCCceEE
Confidence 88999999999999874 55778889999999999975 5789999999999999975432 21 222233443
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCCceEE-EecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYRKGSALA-ILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
..++++++++++| .|++|++||+++++.+. .+.+|...|.+++|+|+ .++++++.||.++||.+
T Consensus 288 ~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 288 TTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp CEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred EEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 3567788777665 59999999999999875 56789999999999987 57889999999777644
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.9e-31 Score=242.59 Aligned_cols=289 Identities=12% Similarity=0.170 Sum_probs=195.6
Q ss_pred CCceeeEEEeCCCCeEEEecCCCeEEEeeCcccc--cccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCC
Q 016769 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~ 95 (383)
.++|+|++|+|||++||+|+.|+.|+|||..+++ +...+..|. ..+.+++|+| ++++|++++.|++|++||+++
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~--~~V~~l~fsp--~~~~l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN--GQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS--SCEEEEEEET--TTTEEEEEETTSCEEEEEEET
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCC--CCEEEEEECC--CCCEEEEEECCCeEEEEeecc
Confidence 5889999999999999999999999999987654 333444443 4588999998 468999999999999999976
Q ss_pred CCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeee
Q 016769 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAV 175 (383)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (383)
+.... . ..+.. . ...+ ....+.++++ ++ +
T Consensus 83 ~~~~~----~----------~~~~~-~---------~~~v-------------------------~~i~~~p~~~-~l-~ 111 (371)
T d1k8kc_ 83 RTWKP----T----------LVILR-I---------NRAA-------------------------RCVRWAPNEK-KF-A 111 (371)
T ss_dssp TEEEE----E----------EECCC-C---------SSCE-------------------------EEEEECTTSS-EE-E
T ss_pred ccccc----c----------ccccc-c---------cccc-------------------------cccccccccc-cc-e
Confidence 52100 0 00000 0 0000 0011234443 33 3
Q ss_pred ccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC----
Q 016769 176 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG---- 251 (383)
Q Consensus 176 ~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~---- 251 (383)
+++.++++++|+++.......+.... ......+.++ .+.|+. ..+++|+.|++|++||+....
T Consensus 112 ~~s~d~~i~i~~~~~~~~~~~~~~~~------~~~~~~v~~v---~~~p~~----~~l~s~s~D~~v~v~~~~~~~~~~~ 178 (371)
T d1k8kc_ 112 VGSGSRVISICYFEQENDWWVCKHIK------KPIRSTVLSL---DWHPNS----VLLAAGSCDFKCRIFSAYIKEVEER 178 (371)
T ss_dssp EEETTSSEEEEEEETTTTEEEEEEEC------TTCCSCEEEE---EECTTS----SEEEEEETTSCEEEEECCCTTTSCC
T ss_pred eecccCcceeeeeecccccccccccc------cccccccccc---cccccc----cceeccccCcEEEEEeeccCccccc
Confidence 45667899999987765432222100 0111222232 355532 358899999999999975421
Q ss_pred -------------CceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCC
Q 016769 252 -------------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 318 (383)
Q Consensus 252 -------------~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 318 (383)
..+.....|...|.+++|++++..+++++.|+.|++||+.... .. ..+..+...+.+++|+|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~--~~--~~~~~~~~~v~s~~fs~d 254 (371)
T d1k8kc_ 179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM--AV--ATLASETLPLLAVTFITE 254 (371)
T ss_dssp CCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT--EE--EEEECSSCCEEEEEEEET
T ss_pred cccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeeccc--ce--eeeecccccceeeeecCC
Confidence 1234456788899999999999999999999999999997543 22 234456677999999999
Q ss_pred CcEEEEEeCCCcEEEEEcCCCceEE-----------------------------------------EecccccceeEEEE
Q 016769 319 SKIAATAGWDRRVRIYNYRKGSALA-----------------------------------------ILKYHHATCNAVSF 357 (383)
Q Consensus 319 ~~~l~s~~~dg~i~iwd~~~~~~~~-----------------------------------------~~~~h~~~v~~v~~ 357 (383)
+++|++ +.|+.+++|+.+...... ....|++.|.++++
T Consensus 255 ~~~la~-g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~ 333 (371)
T d1k8kc_ 255 SSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISV 333 (371)
T ss_dssp TEEEEE-ETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEE
T ss_pred CCEEEE-EcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEE
Confidence 988775 558877777653211000 00138889999999
Q ss_pred eCCC----CEEEEEeCCCcEEEEeCC
Q 016769 358 SSDC----KLMASASEDSTVALWELY 379 (383)
Q Consensus 358 spd~----~~las~s~d~~i~~w~~~ 379 (383)
+|++ ..|+|+|.||.|++||+.
T Consensus 334 ~~~~~~~~~~~~T~g~Dg~v~iW~~~ 359 (371)
T d1k8kc_ 334 LSGGKAKCSQFCTTGMDGGMSIWDVR 359 (371)
T ss_dssp EESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred eCCCCcceEEEEEEcCCCeEEEEeCC
Confidence 8754 368999999999999973
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-30 Score=226.61 Aligned_cols=280 Identities=16% Similarity=0.291 Sum_probs=193.8
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
.+.+..+.+|...|+|++| |+++|||||.||+|+|||+.+++++..+..|. ..+.++++. ++.|+|++.|++
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~--~~V~~v~~~----~~~l~s~s~D~~ 76 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT--GSVLCLQYD----ERVIITGSSDST 76 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCS--SCEEEEECC----SSEEEEEETTSC
T ss_pred EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCC--CCEeeeecc----cceeeccccccc
Confidence 3455667789999998755 78999999999999999999888887776664 356777664 478999999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
+++|++..+.... .. .. .... ......
T Consensus 77 i~~~~~~~~~~~~----~~-~~-----------~~~~-------------------------------------~~~~~~ 103 (293)
T d1p22a2 77 VRVWDVNTGEMLN----TL-IH-----------HCEA-------------------------------------VLHLRF 103 (293)
T ss_dssp EEEEESSSCCEEE----EE-CC-----------CCSC-------------------------------------EEEEEC
T ss_pred ccccccccccccc----cc-cc-----------cccc-------------------------------------cccccc
Confidence 9999997763100 00 00 0000 000001
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
.. ..+ +++..++.+++||+.+.......... ..+.....+. .+.. ..+++++.|+.|++||+
T Consensus 104 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~---~~~~------~~~~~~s~d~~i~~~d~ 165 (293)
T d1p22a2 104 NN-GMM-VTCSKDRSIAVWDMASPTDITLRRVL-------VGHRAAVNVV---DFDD------KYIVSASGDRTIKVWNT 165 (293)
T ss_dssp CT-TEE-EEEETTSCEEEEECSSSSCCEEEEEE-------CCCSSCEEEE---EEET------TEEEEEETTSEEEEEET
T ss_pred cc-cce-eecccccceeEeeccccccccccccc-------cccccccccc---eecc------cccccccCCCceeeecC
Confidence 11 122 33455688999999876643222110 0011111111 1111 14678899999999999
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 327 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~ 327 (383)
++. ..+..++.|...+..+.+++ ..+++++.|+.|++||++...... ....+...+. .+.+++.+|++++.
T Consensus 166 ~~~-~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~v~--~~~~~~~~l~sg~~ 236 (293)
T d1p22a2 166 STC-EFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLR----VLEGHEELVR--CIRFDNKRIVSGAY 236 (293)
T ss_dssp TTC-CEEEEEECCSSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEE----EECCCSSCEE--EEECCSSEEEEEET
T ss_pred CCC-cEEEEEcccccccccccCCC--CeEEEecCCCEEEEEecccceeee----eecccceeee--eccccceEEEEEcC
Confidence 874 45677888888888888875 468999999999999997543221 2223333444 35677889999999
Q ss_pred CCcEEEEEcCC---------CceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 016769 328 DRRVRIYNYRK---------GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 377 (383)
Q Consensus 328 dg~i~iwd~~~---------~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~ 377 (383)
||+|++||+.. ...+..+.+|...|.+++|+ +++|+|||.|++|++||
T Consensus 237 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 99999999843 34577889999999999984 57899999999999998
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=2.5e-31 Score=238.00 Aligned_cols=305 Identities=10% Similarity=0.065 Sum_probs=196.1
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccccccccc-ccccceeeeeeecCCCCcceeEecccCCeE
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV-HSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti 88 (383)
.++++++|++.|++|+|+|++++|||||.||+|||||+........+.. ..+...+.+++|.+. ++..+++|+.|+++
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~-~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEI 81 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-SSEEEEEEETTSCE
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCC-CCCEEEEcccccce
Confidence 5678899999999999999999999999999999999876544332221 112346888998874 34678999999999
Q ss_pred EEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCC
Q 016769 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAE 168 (383)
Q Consensus 89 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (383)
++|++..+.... ..... . ... .... ....
T Consensus 82 ~~w~~~~~~~~~----~~~~~------------~--------~~~--------------------------~~~~-~~~~ 110 (342)
T d1yfqa_ 82 LKVDLIGSPSFQ----ALTNN------------E--------ANL--------------------------GICR-ICKY 110 (342)
T ss_dssp EEECSSSSSSEE----ECBSC------------C--------CCS--------------------------CEEE-EEEE
T ss_pred eeeecccccccc----ccccc------------c--------ccc--------------------------cccc-cccc
Confidence 999997653210 00000 0 000 0000 0011
Q ss_pred CCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCC
Q 016769 169 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 248 (383)
Q Consensus 169 ~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~ 248 (383)
+... +++++.++++++||+++............. ........+..+ .+. ...+++++.|+.|++||++
T Consensus 111 ~~~~-~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~----~~~~~~~~~d~~i~~~~~~ 178 (342)
T d1yfqa_ 111 GDDK-LIAASWDGLIEVIDPRNYGDGVIAVKNLNS----NNTKVKNKIFTM---DTN----SSRLIVGMNNSQVQWFRLP 178 (342)
T ss_dssp TTTE-EEEEETTSEEEEECHHHHTTBCEEEEESCS----SSSSSCCCEEEE---EEC----SSEEEEEESTTEEEEEESS
T ss_pred cccc-ccccccccccceeeccccccceeeeccccc----ccccceeeeeee---ecc----CCceeeecCCCcEEEEecc
Confidence 1122 344556789999999765533222211100 000001111111 111 1257889999999999997
Q ss_pred CCCCce--eeeeccccCeEEEEE-eCCCCceEEEEcCCcEEEEEccCCCCee------EEee-----eeecCCCCeEEEE
Q 016769 249 NPGIPL--TAMKVHLEPVLCLSI-DESCNGGISGGADQKIVLYNLDHSTGSC------VIKK-----EINLERPGISGTS 314 (383)
Q Consensus 249 ~~~~~~--~~~~~h~~~v~~~~~-~~~~~~~~s~~~d~~i~~wdl~~~~~~~------~~~~-----~~~~~~~~i~~~~ 314 (383)
...... .....+.....+... ......+++++.|+.+.+|+++...... .... ....+...+++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 258 (342)
T d1yfqa_ 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258 (342)
T ss_dssp CCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEE
T ss_pred cCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEE
Confidence 644321 112223334445444 3445567899999999999986432211 0000 0122345688999
Q ss_pred ECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 315 IRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 315 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
|+|++++||+|+.||+|++||+++++.+..+..+. .+..++|+|++++||+|+.|..+++|...
T Consensus 259 ~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred ecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 99999999999999999999999999998886433 45567899999999999999988888764
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.4e-29 Score=224.10 Aligned_cols=297 Identities=15% Similarity=0.126 Sum_probs=193.1
Q ss_pred CCceeeEEEeCCCCeEEEecCCC-eEEEeeCccccccc--ccccccccceeeeeeecCCCCcceeEecccCCeEEEeecC
Q 016769 18 RASVTDVCFHQTKPILFAGTTGG-ELRIWDTVQHRTVS--SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (383)
Q Consensus 18 ~~~V~~v~f~~~~~~L~sgs~D~-~v~vW~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~ 94 (383)
++.+++++|+|+++.|+.++.+. .|+.|+....+... ....|. ...+.+++|+|..++.+|+||+.|++|++||+.
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~-~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~ 95 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG-SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 95 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTT-TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCC-CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeec
Confidence 34568899999999999887664 46788765433222 222221 235889999986566788999999999999997
Q ss_pred CCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceee
Q 016769 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMA 174 (383)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (383)
.+.......... ...+.... + . .....+.+++..+++
T Consensus 96 ~~~~~~~~~~~~------~~~~~~~~--------------------~----------------~-v~~v~~s~~~~~l~~ 132 (325)
T d1pgua1 96 FDKESNSVEVNV------KSEFQVLA--------------------G----------------P-ISDISWDFEGRRLCV 132 (325)
T ss_dssp EEGGGTEEEEEE------EEEEECCS--------------------S----------------C-EEEEEECTTSSEEEE
T ss_pred CCcceeeeeccc------cccccccc--------------------C----------------c-EEEEEECCCCCccce
Confidence 653211000000 00000000 0 0 000123345555555
Q ss_pred eccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCc-
Q 016769 175 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP- 253 (383)
Q Consensus 175 ~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~- 253 (383)
++++.++.+++|+.++++.+..+..+ .....++ .+.+.. ...+++++.|+.|++||++.....
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~h----------~~~v~~~---~~~~~~---~~~~~~~~~d~~v~~~d~~~~~~~~ 196 (325)
T d1pgua1 133 VGEGRDNFGVFISWDSGNSLGEVSGH----------SQRINAC---HLKQSR---PMRSMTVGDDGSVVFYQGPPFKFSA 196 (325)
T ss_dssp EECCSSCSEEEEETTTCCEEEECCSC----------SSCEEEE---EECSSS---SCEEEEEETTTEEEEEETTTBEEEE
T ss_pred eeccccceEEEEeecccccceeeeec----------ccccccc---cccccc---cceEEEeecccccccccccccccce
Confidence 55566788999999988877766431 1122222 244432 224778999999999998753321
Q ss_pred -eeeeeccccCeEEEEEeCC-CCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEEC---CCCcEEEEEeCC
Q 016769 254 -LTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR---PDSKIAATAGWD 328 (383)
Q Consensus 254 -~~~~~~h~~~v~~~~~~~~-~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~---p~~~~l~s~~~d 328 (383)
......|...|.+++|+|+ +..+++++.|+.|++||++..+.. ..+..+...+.++.|+ |++++|++++.|
T Consensus 197 ~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~----~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D 272 (325)
T d1pgua1 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL----KYIEDDQEPVQGGIFALSWLDSQKFATVGAD 272 (325)
T ss_dssp EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE----EECCBTTBCCCSCEEEEEESSSSEEEEEETT
T ss_pred ecccccCCCCccEEeeeccccceeccccccccceeeeeecccccc----ccccccccccccceeeeeccCCCEEEEEeCC
Confidence 1223456788999999986 567889999999999998754422 2233334444433333 688999999999
Q ss_pred CcEEEEEcCCCceEEEecccccc--eeEEEEeCC-CCEEEEEeCCCcEEEEeC
Q 016769 329 RRVRIYNYRKGSALAILKYHHAT--CNAVSFSSD-CKLMASASEDSTVALWEL 378 (383)
Q Consensus 329 g~i~iwd~~~~~~~~~~~~h~~~--v~~v~~spd-~~~las~s~d~~i~~w~~ 378 (383)
++|+|||+++++.+..+..|... +..++|.+. +.+|++||.||.|++||+
T Consensus 273 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 273 ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 99999999999998877665543 445555543 348999999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.3e-29 Score=231.46 Aligned_cols=314 Identities=11% Similarity=0.179 Sum_probs=186.1
Q ss_pred eeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccccccc------cccccc-ceee---eeeecCCCCcceeEe
Q 016769 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS------WVHSAA-HGIV---SVATGPSIGLNKVIS 81 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~------~~~~~~-~~~~---~~~~~~~~~~~~l~s 81 (383)
...+||.+.|++|++++ ++|+|+|.|++|||||.......... ..+... +.+. .+.... .+...+++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s 84 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDA-FELCLVAT 84 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTT-EEEEEEEE
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCC-CCCcEEEE
Confidence 46789999999999865 68999999999999997554321111 011100 1111 111111 12245678
Q ss_pred cccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccce
Q 016769 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEI 161 (383)
Q Consensus 82 ~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (383)
++.|+++++|++........ ... ... ..... ......++... .
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~-~~~----------~~~-~~~~~----~~~~~~~~~~~---------------------~ 127 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKK-VIF----------EKL-DLLDS----DMKKHSFWALK---------------------W 127 (393)
T ss_dssp EETTSCEEEEEEEECTTTCC-EEE----------EEE-CCSCT----TGGGSCEEEEE---------------------E
T ss_pred EeCCCcEEEEEccCCCceee-eec----------ccc-ceeee----ccCCCceEEEE---------------------E
Confidence 99999999999865432110 000 000 00000 00000000000 0
Q ss_pred ecccCCCCCceeeeccCCcceEEEEecCCCCee-e----------EeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCc
Q 016769 162 IDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC-T----------RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF 230 (383)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~-~----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (383)
..........+ +++++.|+++++||+...... . .+.... ..........+++. +.|+ +
T Consensus 128 ~~~~~~~~~~~-~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~---~s~d---g- 196 (393)
T d1sq9a_ 128 GASNDRLLSHR-LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV---ESPMTPSQFATSVD---ISER---G- 196 (393)
T ss_dssp ECCC----CEE-EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEE---CCSSSSCCCCCEEE---ECTT---S-
T ss_pred ecCCCcccccE-EEEEcCCCcEEEEEeecCCcccceeeeeeccceecccce---ecccCCCCcEEEEE---ECCC---C-
Confidence 00000001123 344566899999998543210 0 000000 00011112233332 4443 1
Q ss_pred eEEEEEeCCCcEEEEeCCCCCCc-----eeeeeccccCeEEEEEeCCCCceEEEEcCCc---EEEEEccCCCCeeEEe--
Q 016769 231 VNVLAGYEDGSILVWDIRNPGIP-----LTAMKVHLEPVLCLSIDESCNGGISGGADQK---IVLYNLDHSTGSCVIK-- 300 (383)
Q Consensus 231 ~~~~sg~~dg~i~~wdl~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~---i~~wdl~~~~~~~~~~-- 300 (383)
.+++|+.|++|++||+++.... ...+.+|..+|.+++|+|++..+++|+.|++ |++||++.......+.
T Consensus 197 -~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~ 275 (393)
T d1sq9a_ 197 -LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP 275 (393)
T ss_dssp -EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred -EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccc
Confidence 5789999999999999874321 1234578999999999999999999999875 8999987654322221
Q ss_pred -------eeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEeccccccee----EEEEeCCCC-------
Q 016769 301 -------KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN----AVSFSSDCK------- 362 (383)
Q Consensus 301 -------~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~----~v~~spd~~------- 362 (383)
.....|...|++++|+|++++|++++.|++|++||+++++++.++.+|...|. .++|+|++.
T Consensus 276 ~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~ 355 (393)
T d1sq9a_ 276 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 355 (393)
T ss_dssp --------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred cccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEccc
Confidence 11234677899999999999999999999999999999999999999986653 234444433
Q ss_pred --------------------EEEEEeCCCcEEEEe
Q 016769 363 --------------------LMASASEDSTVALWE 377 (383)
Q Consensus 363 --------------------~las~s~d~~i~~w~ 377 (383)
.|++++.|+.|++|.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 356 FDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp EEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred ceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 366777777777774
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=1.3e-27 Score=213.76 Aligned_cols=254 Identities=13% Similarity=0.124 Sum_probs=172.4
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEeccc--C
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR--D 85 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--D 85 (383)
..+...+.+|++.|++++|+|+|++|+||+.||+|+|||+.+...............+.+++|++ ++..+++++. +
T Consensus 48 ~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--d~~~l~~~~~~~~ 125 (311)
T d1nr0a1 48 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRE 125 (311)
T ss_dssp SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSS
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccc--ccccccccccccc
Confidence 45667889999999999999999999999999999999998766543221222234688899988 4577777764 5
Q ss_pred CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceeccc
Q 016769 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDV 165 (383)
Q Consensus 86 ~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (383)
..+++|+++++.... .+..+. ..+ ....+
T Consensus 126 ~~~~v~~~~~~~~~~----~l~~h~----------------------~~v-------------------------~~v~~ 154 (311)
T d1nr0a1 126 RFGHVFLFDTGTSNG----NLTGQA----------------------RAM-------------------------NSVDF 154 (311)
T ss_dssp CSEEEEETTTCCBCB----CCCCCS----------------------SCE-------------------------EEEEE
T ss_pred ccccccccccccccc----cccccc----------------------ccc-------------------------ccccc
Confidence 679999998764211 000000 000 00112
Q ss_pred CCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEE
Q 016769 166 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 245 (383)
Q Consensus 166 ~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~w 245 (383)
.+++ ++++++|+.|+.|++||+++.+....+..+ ...+.++ .+.|+. ..+++++.|+.|++|
T Consensus 155 ~~~~-~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~----------~~~i~~v---~~~p~~----~~l~~~~~d~~v~~~ 216 (311)
T d1nr0a1 155 KPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEH----------TKFVHSV---RYNPDG----SLFASTGGDGTIVLY 216 (311)
T ss_dssp CSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCC----------SSCEEEE---EECTTS----SEEEEEETTSCEEEE
T ss_pred cccc-eeeecccccccccccccccccccccccccc----------ccccccc---ccCccc----ccccccccccccccc
Confidence 3333 345667788999999999998876655431 1122222 244432 368889999999999
Q ss_pred eCCCCCCceee-------eeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC-CeEEEEECC
Q 016769 246 DIRNPGIPLTA-------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP-GISGTSIRP 317 (383)
Q Consensus 246 dl~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~-~i~~~~~~p 317 (383)
|+++... ... ..+|..+|.+++|++++..+++|+.|+.|++||++.. +... .+..+.. ....+.+.+
T Consensus 217 d~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~--~~~~--~l~~~~~~~~~~~~~~~ 291 (311)
T d1nr0a1 217 NGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL--KVEK--TIPVGTRIEDQQLGIIW 291 (311)
T ss_dssp ETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEE--EEECCSSGGGCEEEEEE
T ss_pred ccccccc-cccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC--cEEE--EEECCCCccceEEEEEe
Confidence 9986432 222 2358889999999999999999999999999998754 3322 2222211 122334444
Q ss_pred CCcEEEEEeCCCcEEEEEcC
Q 016769 318 DSKIAATAGWDRRVRIYNYR 337 (383)
Q Consensus 318 ~~~~l~s~~~dg~i~iwd~~ 337 (383)
++.++++++.||.|++||.+
T Consensus 292 ~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 292 TKQALVSISANGFINFVNPE 311 (311)
T ss_dssp CSSCEEEEETTCCEEEEETT
T ss_pred cCCEEEEEECCCEEEEEeCC
Confidence 55679999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.7e-28 Score=216.69 Aligned_cols=242 Identities=18% Similarity=0.266 Sum_probs=172.5
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccc--ccccccccccceeeeeeecCCCCcceeEecccCCeEEE
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~ 90 (383)
...+|.+.|++|+|+|++++|++|+.|++|++||+..... ...+..| ...+..+.+.+ ++..+++++.|+++++
T Consensus 92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~--~~~~l~s~~~d~~i~~ 167 (337)
T d1gxra_ 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS--APACYALAISP--DSKVCFSCCSDGNIAV 167 (337)
T ss_dssp ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS--SSCEEEEEECT--TSSEEEEEETTSCEEE
T ss_pred eecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccc--ccccccccccc--cccccccccccccccc
Confidence 4568999999999999999999999999999999864432 2222222 23466777877 4678999999999999
Q ss_pred eecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCC
Q 016769 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGP 170 (383)
Q Consensus 91 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (383)
|++.++.... .... .. ..+ ....+.+++.
T Consensus 168 ~~~~~~~~~~----~~~~-------------~~---------~~v-------------------------~~l~~s~~~~ 196 (337)
T d1gxra_ 168 WDLHNQTLVR----QFQG-------------HT---------DGA-------------------------SCIDISNDGT 196 (337)
T ss_dssp EETTTTEEEE----EECC-------------CS---------SCE-------------------------EEEEECTTSS
T ss_pred cccccccccc----cccc-------------cc---------ccc-------------------------cccccccccc
Confidence 9998753110 0000 00 000 0011223332
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCC
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 250 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~ 250 (383)
.+ +.++.++.+++||+++++.+..+... ....++ .+.|.. ..+++|+.|+.|++||+++.
T Consensus 197 -~~-~~~~~d~~v~i~d~~~~~~~~~~~~~-----------~~i~~l---~~~~~~----~~l~~~~~d~~i~i~d~~~~ 256 (337)
T d1gxra_ 197 -KL-WTGGLDNTVRSWDLREGRQLQQHDFT-----------SQIFSL---GYCPTG----EWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp -EE-EEEETTSEEEEEETTTTEEEEEEECS-----------SCEEEE---EECTTS----SEEEEEETTSCEEEEETTSS
T ss_pred -cc-ccccccccccccccccceeecccccc-----------cceEEE---EEcccc----cccceecccccccccccccc
Confidence 33 34566899999999998876555321 122222 244432 35888999999999999875
Q ss_pred CCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCc
Q 016769 251 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 330 (383)
Q Consensus 251 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~ 330 (383)
. ......|..+|.++.|++++..+++++.|+.|++||+.... .... ..+...|.+++|+|++++|++|+.||+
T Consensus 257 ~--~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~--~~~~---~~~~~~v~~~~~s~d~~~l~t~s~D~~ 329 (337)
T d1gxra_ 257 D--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--SIFQ---SKESSSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp C--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEE---EECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred c--cccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC--EEEE---ccCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence 4 33556788999999999999999999999999999987543 2222 224578999999999999999999999
Q ss_pred EEEEEc
Q 016769 331 VRIYNY 336 (383)
Q Consensus 331 i~iwd~ 336 (383)
|+|||+
T Consensus 330 I~vWdl 335 (337)
T d1gxra_ 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.2e-26 Score=214.13 Aligned_cols=204 Identities=12% Similarity=0.127 Sum_probs=135.6
Q ss_pred eeeeccCCcceEEEEecCCCCeeeEecc-CcCCCCCCcCCCCCceeeEEEeecCCCC-CCceEEEEEeCCCcEEEEeCCC
Q 016769 172 YMAVAGEQLSEVEIWDLNTAERCTRLHQ-NSCGGSPNFSSKGRGMCMAVQAYLPSKS-QGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
.++++++.|+.+++|++........+.. ...... ............ +.+... .....+++++.||+|++||+..
T Consensus 80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~dg~i~vw~~~~ 155 (393)
T d1sq9a_ 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD-SDMKKHSFWALK---WGASNDRLLSHRLVATDVKGTTYIWKFHP 155 (393)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSC-TTGGGSCEEEEE---EECCC----CEEEEEEETTSCEEEEEEES
T ss_pred cEEEEEeCCCcEEEEEccCCCceeeeeccccceee-eccCCCceEEEE---EecCCCcccccEEEEEcCCCcEEEEEeec
Confidence 3556667789999999865443221111 000000 000111111111 211111 1123577899999999999853
Q ss_pred CCC----------ce-------eeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEee--eeecCCCCe
Q 016769 250 PGI----------PL-------TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK--EINLERPGI 310 (383)
Q Consensus 250 ~~~----------~~-------~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~--~~~~~~~~i 310 (383)
... .. .....+...+.+++|++++ .+++|+.|+.|++||+........+.. .+..+...|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V 234 (393)
T d1sq9a_ 156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234 (393)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred CCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceE
Confidence 210 00 0112234567889999886 788999999999999975432222211 234466789
Q ss_pred EEEEECCCCcEEEEEeCCCc---EEEEEcCCCceEEEec-------------ccccceeEEEEeCCCCEEEEEeCCCcEE
Q 016769 311 SGTSIRPDSKIAATAGWDRR---VRIYNYRKGSALAILK-------------YHHATCNAVSFSSDCKLMASASEDSTVA 374 (383)
Q Consensus 311 ~~~~~~p~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~-------------~h~~~v~~v~~spd~~~las~s~d~~i~ 374 (383)
++++|+|++++|++|+.|++ |++||+.+++.+..+. +|.+.|.+++|+||+++|+|||.|++|+
T Consensus 235 ~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~ 314 (393)
T d1sq9a_ 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 314 (393)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred EEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEE
Confidence 99999999999999999975 9999999988777664 7999999999999999999999999999
Q ss_pred EEeCCC
Q 016769 375 LWELYP 380 (383)
Q Consensus 375 ~w~~~~ 380 (383)
+||+..
T Consensus 315 vWd~~~ 320 (393)
T d1sq9a_ 315 FWDVKT 320 (393)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 999864
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=8.3e-26 Score=206.98 Aligned_cols=293 Identities=14% Similarity=0.229 Sum_probs=183.2
Q ss_pred eEEEecCCCeEEEeeCccccccccccc--ccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecC
Q 016769 32 ILFAGTTGGELRIWDTVQHRTVSSSWV--HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (383)
Q Consensus 32 ~L~sgs~D~~v~vW~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~ 109 (383)
.++.+..++.+.+|+....+....... ..+...|.+++|++ ++++|++|+ |++|++||+.++.... .+...
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~--dg~~lasg~-d~~i~iW~~~~~~~~~----~~~~~ 102 (388)
T d1erja_ 30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVA----RLSDD 102 (388)
T ss_dssp TTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEE----EECC-
T ss_pred cccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECC--CCCEEEEEe-CCeEEEEEecccceEe----eeccc
Confidence 355678888999999765443221111 12234688999998 467888876 8999999998874311 11100
Q ss_pred ceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecC
Q 016769 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLN 189 (383)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~ 189 (383)
.... ...... ......... .......++++++ ++ ++|+.|+.|++||..
T Consensus 103 ~~~~------~~~~~~-------------------~~~~~~~~~----~~V~~l~~s~~~~-~l-~s~~~dg~v~i~~~~ 151 (388)
T d1erja_ 103 SAAN------KDPENL-------------------NTSSSPSSD----LYIRSVCFSPDGK-FL-ATGAEDRLIRIWDIE 151 (388)
T ss_dssp -----------------------------------------CCC----CBEEEEEECTTSS-EE-EEEETTSCEEEEETT
T ss_pred cccc------cccccc-------------------ccccccCCC----CCEEEEEECCCCC-cc-eeccccccccccccc
Confidence 0000 000000 000000000 0001122344543 44 456678999999999
Q ss_pred CCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEE
Q 016769 190 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI 269 (383)
Q Consensus 190 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~ 269 (383)
+++.+.....+ ...+.+. .+.+. ...+++++.++.|++||+++.. .......+ ....++.+
T Consensus 152 ~~~~~~~~~~h----------~~~v~~~---~~~~~----~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~-~~~~~~~~ 212 (388)
T d1erja_ 152 NRKIVMILQGH----------EQDIYSL---DYFPS----GDKLVSGSGDRTVRIWDLRTGQ-CSLTLSIE-DGVTTVAV 212 (388)
T ss_dssp TTEEEEEECCC----------SSCEEEE---EECTT----SSEEEEEETTSEEEEEETTTTE-EEEEEECS-SCEEEEEE
T ss_pred ccccccccccc----------ccccccc---ccccc----cccccccccceeeeeeeccccc-cccccccc-cccccccc
Confidence 88876655421 1122222 12222 2257889999999999998743 23333333 44445555
Q ss_pred -eCCCCceEEEEcCCcEEEEEccCCCCeeEEeee---eecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCc-----
Q 016769 270 -DESCNGGISGGADQKIVLYNLDHSTGSCVIKKE---INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS----- 340 (383)
Q Consensus 270 -~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~---~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~----- 340 (383)
..++..+++++.|+.|++||+........+... ...+...|.+++|+|++++|++++.|++|++||+.+++
T Consensus 213 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 292 (388)
T d1erja_ 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292 (388)
T ss_dssp CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred cCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccc
Confidence 456678899999999999998765432222111 22355679999999999999999999999999997543
Q ss_pred -------eEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 016769 341 -------ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 381 (383)
Q Consensus 341 -------~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~ 381 (383)
.......|...|.+++|+|++++|++|+.||.|++||+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~ 340 (388)
T d1erja_ 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 340 (388)
T ss_dssp ------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred ccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 23455678899999999999999999999999999998643
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=1.3e-25 Score=205.38 Aligned_cols=247 Identities=15% Similarity=0.091 Sum_probs=172.8
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..|.+++|+| +++.|++++.|++|++||.++++.. .+ ...+.+. ..
T Consensus 8 ~pIt~~~~s~--dg~~la~~~~~~~i~iw~~~~~~~~-----~~----------~~l~gH~---------~~-------- 53 (371)
T d1k8kc_ 8 EPISCHAWNK--DRTQIAICPNNHEVHIYEKSGNKWV-----QV----------HELKEHN---------GQ-------- 53 (371)
T ss_dssp SCCCEEEECT--TSSEEEEECSSSEEEEEEEETTEEE-----EE----------EEEECCS---------SC--------
T ss_pred CCeEEEEECC--CCCEEEEEeCCCEEEEEECCCCCEE-----EE----------EEecCCC---------CC--------
Confidence 4588999998 4688999999999999998765310 00 0000000 00
Q ss_pred ccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEee
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 222 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 222 (383)
.....++++++ +++ +++.|++|++||++++.....+... .+.....++ .|
T Consensus 54 -----------------V~~l~fsp~~~-~l~-s~s~D~~i~vWd~~~~~~~~~~~~~--------~~~~~v~~i---~~ 103 (371)
T d1k8kc_ 54 -----------------VTGVDWAPDSN-RIV-TCGTDRNAYVWTLKGRTWKPTLVIL--------RINRAARCV---RW 103 (371)
T ss_dssp -----------------EEEEEEETTTT-EEE-EEETTSCEEEEEEETTEEEEEEECC--------CCSSCEEEE---EE
T ss_pred -----------------EEEEEECCCCC-EEE-EEECCCeEEEEeecccccccccccc--------ccccccccc---cc
Confidence 00012234443 444 4566899999999876643322210 011122222 35
Q ss_pred cCCCCCCceEEEEEeCCCcEEEEeCCCCCCc---eeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCee--
Q 016769 223 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIP---LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC-- 297 (383)
Q Consensus 223 ~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~-- 297 (383)
.|+. ..+++|+.|++|++|++...... ......|...|.++.|+|++..+++|+.|+.+++||+.......
T Consensus 104 ~p~~----~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~ 179 (371)
T d1k8kc_ 104 APNE----KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179 (371)
T ss_dssp CTTS----SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCC
T ss_pred cccc----ccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccccc
Confidence 5542 25889999999999998764431 23345688899999999999999999999999999975432110
Q ss_pred ------------EEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEE
Q 016769 298 ------------VIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMA 365 (383)
Q Consensus 298 ------------~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~la 365 (383)
........+...+.+++|+|++++|++++.|++|++||+.+++.+..+..|..+|.+++|+||+++|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la 259 (371)
T d1k8kc_ 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVA 259 (371)
T ss_dssp CCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred ccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEE
Confidence 11123344566799999999999999999999999999999999999999999999999999998888
Q ss_pred EEeCCCcEEEEeC
Q 016769 366 SASEDSTVALWEL 378 (383)
Q Consensus 366 s~s~d~~i~~w~~ 378 (383)
+|+ |+.+++|..
T Consensus 260 ~g~-d~~~~~~~~ 271 (371)
T d1k8kc_ 260 AGH-DCFPVLFTY 271 (371)
T ss_dssp EET-TSSCEEEEE
T ss_pred EEc-CCceEEEEe
Confidence 665 777777764
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=1.2e-24 Score=191.98 Aligned_cols=257 Identities=18% Similarity=0.298 Sum_probs=182.2
Q ss_pred EeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeecccc
Q 016769 44 IWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123 (383)
Q Consensus 44 vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (383)
.|.... .....+.+|. ..|.+++|+|+ ++.|+||+.|++|++||+++++... .+..+..
T Consensus 2 ~w~p~~-~~~~~L~GH~--~~I~~l~~sp~--~~~l~s~s~Dg~i~iWd~~~~~~~~----~~~~h~~------------ 60 (317)
T d1vyhc1 2 EWIPRP-PEKYALSGHR--SPVTRVIFHPV--FSVMVSASEDATIKVWDYETGDFER----TLKGHTD------------ 60 (317)
T ss_dssp CCCCCS-SCSCEEECCS--SCEEEEEECSS--SSEEEEEESSSCEEEEETTTCCCCE----EECCCSS------------
T ss_pred ccCCCC-CccEEEcCCC--CCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCEEE----EEeCCCC------------
Confidence 465432 2234455554 46889999984 6889999999999999998875311 1110000
Q ss_pred ccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCC
Q 016769 124 ANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG 203 (383)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~ 203 (383)
.+. ...+.+++ .+ ++.+..++.+.+|+.........+...
T Consensus 61 ----------~V~-------------------------~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 100 (317)
T d1vyhc1 61 ----------SVQ-------------------------DISFDHSG-KL-LASCSADMTIKLWDFQGFECIRTMHGH--- 100 (317)
T ss_dssp ----------CEE-------------------------EEEECTTS-SE-EEEEETTSCCCEEETTSSCEEECCCCC---
T ss_pred ----------cEE-------------------------EEeeeccc-cc-ccccccccccccccccccccccccccc---
Confidence 000 00112222 23 334455678888988776654333211
Q ss_pred CCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCC
Q 016769 204 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ 283 (383)
Q Consensus 204 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~ 283 (383)
.....+. .+.+.. ..+++++.|+.+++||+++. .....+..|...+.++.+++++..+++++.|+
T Consensus 101 -------~~~~~~~---~~~~~~----~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 165 (317)
T d1vyhc1 101 -------DHNVSSV---SIMPNG----DHIVSASRDKTIKMWEVQTG-YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165 (317)
T ss_dssp -------SSCEEEE---EECSSS----SEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred -------cccceee---eccCCC----ceEEeeccCcceeEeecccc-eeeeEEccCCCcceeeecccCCCEEEEEeCCC
Confidence 1111111 233332 25889999999999999874 45677888999999999999999999999999
Q ss_pred cEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCC--------------------CcEEEEEeCCCcEEEEEcCCCceEE
Q 016769 284 KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD--------------------SKIAATAGWDRRVRIYNYRKGSALA 343 (383)
Q Consensus 284 ~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~--------------------~~~l~s~~~dg~i~iwd~~~~~~~~ 343 (383)
.|++|++....... .+..+...+..+.++|+ +.++++++.|+.|++||+.+++.+.
T Consensus 166 ~v~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 241 (317)
T d1vyhc1 166 TVRVWVVATKECKA----ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241 (317)
T ss_dssp CEEEEETTTCCEEE----EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred eEEEEeeccceeeE----EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEE
Confidence 99999987654222 23334456777776654 4579999999999999999999999
Q ss_pred EecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 344 ILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 344 ~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
.+.+|...|.+++|+|++++|++|+.||.|++||+..
T Consensus 242 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 278 (317)
T d1vyhc1 242 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 278 (317)
T ss_dssp EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred EEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 9999999999999999999999999999999999864
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.9e-24 Score=194.00 Aligned_cols=259 Identities=17% Similarity=0.153 Sum_probs=165.7
Q ss_pred CCCeeeeeecC-CceeeEEEeC--CCCeEEEecCCCeEEEeeCcccccccccccc------cccceeeeeeecCCCCcce
Q 016769 8 PDPVAVLRGHR-ASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRTVSSSWVH------SAAHGIVSVATGPSIGLNK 78 (383)
Q Consensus 8 ~~~~~~l~gH~-~~V~~v~f~~--~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 78 (383)
..++..+.||. ..|++++|+| ++.+|+||+.||+|+|||+...+....+..+ .....+.++++++ ++..
T Consensus 52 ~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~ 129 (325)
T d1pgua1 52 VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRR 129 (325)
T ss_dssp SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSE
T ss_pred ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC--CCCc
Confidence 34567788985 6899999998 5679999999999999998766554432211 1123467888887 4566
Q ss_pred eEec--ccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccC
Q 016769 79 VISQ--GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESN 156 (383)
Q Consensus 79 l~s~--~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (383)
++++ +.|+.+++|+++++.... .+..+...
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~-------------------------------------------- 161 (325)
T d1pgua1 130 LCVVGEGRDNFGVFISWDSGNSLG----EVSGHSQR-------------------------------------------- 161 (325)
T ss_dssp EEEEECCSSCSEEEEETTTCCEEE----ECCSCSSC--------------------------------------------
T ss_pred cceeeccccceEEEEeecccccce----eeeecccc--------------------------------------------
Confidence 6544 468899999998763210 10000000
Q ss_pred CccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEE
Q 016769 157 RSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 236 (383)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 236 (383)
.....+.+.++ +++++++.|+.+++||+++.+......... .....+.++ .|.|+. ...+++|
T Consensus 162 ---v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~-------~~~~~v~~v---~~~pd~---~~~l~s~ 224 (325)
T d1pgua1 162 ---INACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHH-------KQGSFVRDV---EFSPDS---GEFVITV 224 (325)
T ss_dssp ---EEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSS-------CTTCCEEEE---EECSTT---CCEEEEE
T ss_pred ---ccccccccccc-ceEEEeecccccccccccccccceeccccc-------CCCCccEEe---eecccc---ceecccc
Confidence 00011223333 345556678999999998877655443211 111122222 355532 2358889
Q ss_pred eCCCcEEEEeCCCCCCceeeeeccccCeEEEEEe---CCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEE
Q 016769 237 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID---ESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGT 313 (383)
Q Consensus 237 ~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~ 313 (383)
+.|+.|++||+++. ..+..++.|..++..+.++ +++..+++++.|+.|++||++.. ..........+...+..+
T Consensus 225 ~~d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~ 301 (325)
T d1pgua1 225 GSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS--KCVQKWTLDKQQLGNQQV 301 (325)
T ss_dssp ETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT--EEEEEEECCTTCGGGCEE
T ss_pred ccccceeeeeeccc-cccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC--CEEEEEEecCCcccCeEE
Confidence 99999999999874 4577788888877655553 56778999999999999999754 333222222332233444
Q ss_pred EECCC-CcEEEEEeCCCcEEEEEc
Q 016769 314 SIRPD-SKIAATAGWDRRVRIYNY 336 (383)
Q Consensus 314 ~~~p~-~~~l~s~~~dg~i~iwd~ 336 (383)
++.+. +.+|++++.||+|++||+
T Consensus 302 ~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 302 GVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEECCCCEEEEEECCCEEEEEEC
Confidence 44332 347899999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=2.6e-24 Score=190.08 Aligned_cols=247 Identities=15% Similarity=0.196 Sum_probs=163.8
Q ss_pred ccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCc
Q 016769 55 SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKD 134 (383)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (383)
.+.+|. ..|.+++++| ++++|+||+.|++|++||++++.... .+.. .| ...
T Consensus 7 ~~~GH~--~~V~~l~~s~--dg~~l~s~s~Dg~v~vWd~~~~~~~~----~~~~--~h-------------------~~~ 57 (299)
T d1nr0a2 7 VRYGHN--KAITALSSSA--DGKTLFSADAEGHINSWDISTGISNR----VFPD--VH-------------------ATM 57 (299)
T ss_dssp EECCCS--SCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEE----CSSC--SC-------------------SSC
T ss_pred EcCCCC--CCcEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEE----EEcC--CC-------------------CCc
Confidence 344554 4688999998 46899999999999999998764211 0000 00 000
Q ss_pred cceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCc
Q 016769 135 CYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRG 214 (383)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~ 214 (383)
.....+.+++ ++ ++++ .|+.+++|++........... ........
T Consensus 58 -------------------------v~~v~~~~~g-~~-~~~~-~d~~v~~~~~~~~~~~~~~~~-------~~~~~~~~ 102 (299)
T d1nr0a2 58 -------------------------ITGIKTTSKG-DL-FTVS-WDDHLKVVPAGGSGVDSSKAV-------ANKLSSQP 102 (299)
T ss_dssp -------------------------EEEEEECTTS-CE-EEEE-TTTEEEEECSSSSSSCTTSCC-------EEECSSCE
T ss_pred -------------------------EEEEEeeccc-ee-eccc-ceeeEEEeccCCccccccccc-------cccccccc
Confidence 0001123343 23 3333 468999999865431100000 00001111
Q ss_pred eeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCC
Q 016769 215 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 294 (383)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~ 294 (383)
.++ .+.++. . +++++.++.+++|+.... .... ....+.++++++++..+++++.|+.|++||++...
T Consensus 103 ~~~---~~s~~g---~--~~~~~~~~~i~~~~~~~~---~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~ 169 (299)
T d1nr0a2 103 LGL---AVSADG---D--IAVAACYKHIAIYSHGKL---TEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS 169 (299)
T ss_dssp EEE---EECTTS---S--CEEEEESSEEEEEETTEE---EEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred ccc---cccccc---c--cccccccccccccccccc---cccc--ccccccccccccccccccccccccccccccccccc
Confidence 111 233332 1 344555789999995431 2212 23467889999999999999999999999997543
Q ss_pred CeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceE---EEecccccceeEEEEeCCCCEEEEEeCCC
Q 016769 295 GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL---AILKYHHATCNAVSFSSDCKLMASASEDS 371 (383)
Q Consensus 295 ~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~v~~spd~~~las~s~d~ 371 (383)
... .....+...|.+++|+|++++|++++.|++|++||+.++... ..+.+|...|.+++|+|++++|++|+.|+
T Consensus 170 ~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg 246 (299)
T d1nr0a2 170 VSE---VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246 (299)
T ss_dssp EEE---EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCC
Confidence 211 122345678999999999999999999999999999887654 35567999999999999999999999999
Q ss_pred cEEEEeCCCC
Q 016769 372 TVALWELYPP 381 (383)
Q Consensus 372 ~i~~w~~~~~ 381 (383)
.|++||+..+
T Consensus 247 ~i~iwd~~~~ 256 (299)
T d1nr0a2 247 SVIVWNMNKP 256 (299)
T ss_dssp CEEEEETTCT
T ss_pred EEEEEECCCC
Confidence 9999998754
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1e-23 Score=189.26 Aligned_cols=292 Identities=15% Similarity=0.192 Sum_probs=164.1
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
-+++.+|.+|.+.|++|+|+|+ .+|+||+.|++|++|+....++.................+.+ ++..+++++.|++
T Consensus 43 ~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~ 119 (355)
T d1nexb2 43 KKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK--NIKYIVTGSRDNT 119 (355)
T ss_dssp TEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEET--TEEEEEEEETTSE
T ss_pred CcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccccccccc--ccceeeeecCCCc
Confidence 3567889999999999999986 589999999999999988766554332222222233344444 3577899999999
Q ss_pred EEEeecCCCCCCCCCe------eeeecC-ce-eee-eE--------Eeecccccccc-ccCCCCccceeccCcccccCcc
Q 016769 88 VKCWDIENGGLSSNPS------LTIKTN-SY-HFC-KL--------SLVKEPYANAK-QANEPKDCYEREVGETVDTDSL 149 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~------~~~~~~-~~-~~~-~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 149 (383)
+++||+++........ ...... .. ... .. ........... ........++...+...
T Consensus 120 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~----- 194 (355)
T d1nexb2 120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL----- 194 (355)
T ss_dssp EEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEE-----
T ss_pred EEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccce-----
Confidence 9999997754211100 000000 00 000 00 00000000000 00000000000000000
Q ss_pred ccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCC
Q 016769 150 CDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG 229 (383)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 229 (383)
..............+.+.+. + ++.++.++.|++||++++..+..+..+. ..+.++. +.+
T Consensus 195 -~~~~~~~~~~~~~~~~~~~~-~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~----------~~v~~~~---~~~----- 253 (355)
T d1nexb2 195 -YILSGHTDRIYSTIYDHERK-R-CISASMDTTIRIWDLENGELMYTLQGHT----------ALVGLLR---LSD----- 253 (355)
T ss_dssp -EEECCCSSCEEEEEEETTTT-E-EEEEETTSCEEEEETTTCCEEEEECCCS----------SCCCEEE---ECS-----
T ss_pred -eeeeccccccccccccccce-e-eecccccceEEeeecccccccccccccc----------ccccccc---ccc-----
Confidence 00000000011112223433 3 3455678999999999998877765321 1222222 211
Q ss_pred ceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEE-eCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCC
Q 016769 230 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 308 (383)
Q Consensus 230 ~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~ 308 (383)
..+++|+.||+|++||+++.. ..+..|...+..+.+ .+++ .+++++.|+.|++||++.... . ......+..
T Consensus 254 -~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~-~~l~~g~d~~i~vwd~~tg~~--~-~~~~~~~~~ 325 (355)
T d1nexb2 254 -KFLVSAAADGSIRGWDANDYS---RKFSYHHTNLSAITTFYVSD-NILVSGSENQFNIYNLRSGKL--V-HANILKDAD 325 (355)
T ss_dssp -SEEEEECTTSEEEEEETTTCC---EEEEEECTTCCCCCEEEECS-SEEEEEETTEEEEEETTTCCB--C-CSCTTTTCS
T ss_pred -ceeeeeecccccccccccccc---eecccccCCceEEEEEcCCC-CEEEEEeCCEEEEEECCCCCE--E-EEEecCCCC
Confidence 258899999999999998743 345566666665544 4444 456666799999999975432 1 122344667
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYR 337 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~ 337 (383)
.|.+++|+|+ .++++++.||+++||.++
T Consensus 326 ~V~~v~~~~~-~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 326 QIWSVNFKGK-TLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp EEEEEEEETT-EEEEEEESSSCEEEEEEE
T ss_pred CEEEEEEcCC-eEEEEEECCCcEEEEEEe
Confidence 8999999987 578889999998877653
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=1.3e-22 Score=181.40 Aligned_cols=248 Identities=15% Similarity=0.215 Sum_probs=168.0
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccc----cccccccceeeeeeecCCCCcceeEecc
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS----SWVHSAAHGIVSVATGPSIGLNKVISQG 83 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (383)
.+.+.++.+|.+.|++++|+|++++|++|+.|+.+++|+......... +..|. ......... .+..+....
T Consensus 87 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~ 161 (340)
T d1tbga_ 87 TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT--GYLSCCRFL---DDNQIVTSS 161 (340)
T ss_dssp TEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCS--SCEEEEEEE---ETTEEEEEE
T ss_pred ceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccc--ccccccccc---ccccccccc
Confidence 345678999999999999999999999999999999999765433222 11111 111122222 135667788
Q ss_pred cCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceec
Q 016769 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIID 163 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (383)
.|.+.+.|........ . ....... . ....
T Consensus 162 ~~~~~~~~~~~~~~~~-----~-----------~~~~~~~----------~-------------------------~~~~ 190 (340)
T d1tbga_ 162 GDTTCALWDIETGQQT-----T-----------TFTGHTG----------D-------------------------VMSL 190 (340)
T ss_dssp TTTEEEEEETTTTEEE-----E-----------EEECCSS----------C-------------------------EEEE
T ss_pred cccccccccccccccc-----c-----------cccccce----------e-------------------------Eeee
Confidence 8888888887543110 0 0000000 0 0000
Q ss_pred ccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 164 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
...+. .. ++++|..++.|++||+++++.+..+..+ ...+.++ .+.|+. ..+++|+.|+.|+
T Consensus 191 ~~~~~-~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~h----------~~~i~~v---~~~p~~----~~l~s~s~d~~i~ 251 (340)
T d1tbga_ 191 SLAPD-TR-LFVSGACDASAKLWDVREGMCRQTFTGH----------ESDINAI---CFFPNG----NAFATGSDDATCR 251 (340)
T ss_dssp EECTT-SS-EEEEEETTTEEEEEETTTTEEEEEECCC----------SSCEEEE---EECTTS----SEEEEEETTSCEE
T ss_pred ccccc-cc-eeEEeecCceEEEEECCCCcEEEEEeCC----------CCCeEEE---EECCCC----CEEEEEeCCCeEE
Confidence 01111 12 3455677899999999998877766532 1222232 244432 3688999999999
Q ss_pred EEeCCCCCCceee--eeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcE
Q 016769 244 VWDIRNPGIPLTA--MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 321 (383)
Q Consensus 244 ~wdl~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 321 (383)
+||++.... ... ...|..++.++.|++++..+++|+.|+.|++||+..... ...+..|...|++++|+|++++
T Consensus 252 ~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~H~~~V~~l~~s~d~~~ 326 (340)
T d1tbga_ 252 LFDLRADQE-LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR----AGVLAGHDNRVSCLGVTDDGMA 326 (340)
T ss_dssp EEETTTTEE-EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSC
T ss_pred EEeeccccc-ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcE----EEEEcCCCCCEEEEEEeCCCCE
Confidence 999987433 322 235567899999999999999999999999999875432 2344567788999999999999
Q ss_pred EEEEeCCCcEEEEE
Q 016769 322 AATAGWDRRVRIYN 335 (383)
Q Consensus 322 l~s~~~dg~i~iwd 335 (383)
|++|+.||+|++||
T Consensus 327 l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 327 VATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSCEEEEC
T ss_pred EEEEccCCEEEEeC
Confidence 99999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=8.4e-22 Score=175.59 Aligned_cols=285 Identities=15% Similarity=0.251 Sum_probs=166.9
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
-+++.+|.+|++.|++++|+|+ +|+||+.|+.+++|+............ ....+...... ...+..+..|++
T Consensus 47 ~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~d~~ 118 (342)
T d2ovrb2 47 GKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYG--HTSTVRCMHLH----EKRVVSGSRDAT 118 (342)
T ss_dssp CCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEE----TTEEEEEETTSE
T ss_pred CCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccc--cceeEeeeecc----ccccccccccee
Confidence 4577899999999999999875 999999999999999876543332211 11222233222 256778889999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
+.+|+..++... ............... ................+........ ... . ...........
T Consensus 119 i~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~-----~~~--~-~~~~~~~~~~~ 185 (342)
T d2ovrb2 119 LRVWDIETGQCL----HVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCL-----HTL--Q-GHTNRVYSLQF 185 (342)
T ss_dssp EEEEESSSCCEE----EEEECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTEEE-----EEE--C-CCSSCEEEEEE
T ss_pred EEEeecccccce----eeeecccccceeecc-ccceeeeecCCCeEEEeecccceee-----EEE--c-CcccccccccC
Confidence 999999876421 111111000000000 0000000000000001111100000 000 0 00001111222
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
++ .+ +++++.|+.|++||++..+.+..+..+ .....++. +.+ ..+++|+.|+.|++||+
T Consensus 186 ~~-~~-l~s~~~dg~i~~~d~~~~~~~~~~~~~----------~~~v~~~~---~~~------~~l~s~s~d~~i~iwd~ 244 (342)
T d2ovrb2 186 DG-IH-VVSGSLDTSIRVWDVETGNCIHTLTGH----------QSLTSGME---LKD------NILVSGNADSTVKIWDI 244 (342)
T ss_dssp CS-SE-EEEEETTSCEEEEETTTCCEEEEECCC----------CSCEEEEE---EET------TEEEEEETTSCEEEEET
T ss_pred CC-CE-EEEEeCCCeEEEeecccceeeeEeccc----------ccceeEEe---cCC------CEEEEEcCCCEEEEEec
Confidence 33 33 455677899999999998877665432 11122221 211 25889999999999999
Q ss_pred CCCCCceeeee---ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeee-eecCCCCeEEEEECCCCcEEE
Q 016769 248 RNPGIPLTAMK---VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE-INLERPGISGTSIRPDSKIAA 323 (383)
Q Consensus 248 ~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l~ 323 (383)
..... ...+. .|...+.++.+++ ..+++++.|+.|++||++..+....+... ...+...|++++|+|++.+++
T Consensus 245 ~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la 321 (342)
T d2ovrb2 245 KTGQC-LQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA 321 (342)
T ss_dssp TTCCE-EEEECSTTSCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred ccccc-cccccccceeeeceeecccCC--CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEE
Confidence 87443 33343 3556777777765 56899999999999999765432222111 123455699999999999999
Q ss_pred EEeCCCc----EEEEEcC
Q 016769 324 TAGWDRR----VRIYNYR 337 (383)
Q Consensus 324 s~~~dg~----i~iwd~~ 337 (383)
+|+.||+ |++||++
T Consensus 322 ~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 322 VGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EECSSSSSCCEEEEEECC
T ss_pred EEeCCCCCeeEEEEEeCC
Confidence 9999985 9999985
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=3.8e-21 Score=178.81 Aligned_cols=297 Identities=12% Similarity=0.018 Sum_probs=182.2
Q ss_pred EEeCCCC--eEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCC
Q 016769 25 CFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNP 102 (383)
Q Consensus 25 ~f~~~~~--~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~ 102 (383)
.++.|.+ ++++.+.||+|+|||+.+++.+..+..+. .+..++|+| +++++++++.|+++++||+++++...
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~---~~~~vafSP--DGk~l~~~~~d~~v~vwd~~t~~~~~-- 97 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY---AVHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTK-- 97 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS---SEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEE--
T ss_pred cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC---CeeEEEECC--CCCEEEEEeCCCCEEEEEccCCceeE--
Confidence 4555543 56889999999999999988887765543 366789998 57889999999999999998874211
Q ss_pred eeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcce
Q 016769 103 SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSE 182 (383)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 182 (383)
...+.....+ . .......++++|+ ++++++..++.
T Consensus 98 ~~~i~~~~~~----------~----------------------------------~~~~s~~~spDG~-~l~v~~~~~~~ 132 (426)
T d1hzua2 98 VAEIKIGIEA----------R----------------------------------SVESSKFKGYEDR-YTIAGAYWPPQ 132 (426)
T ss_dssp EEEEECCSEE----------E----------------------------------EEEECCSTTCTTT-EEEEEEEESSE
T ss_pred EEEEeCCCCC----------c----------------------------------ceEEeeeecCCCC-EEEEeecCCCe
Confidence 0011110000 0 0011123445665 55666667889
Q ss_pred EEEEecCCCCeeeEeccCcC-CCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccc
Q 016769 183 VEIWDLNTAERCTRLHQNSC-GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 261 (383)
Q Consensus 183 i~~Wdl~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~ 261 (383)
+++||..++..+..+..... +....+...+....++ ..+ .+...+++....+.+.+++.............+.
T Consensus 133 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~s~---d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 206 (426)
T d1hzua2 133 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII---ASH---EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA 206 (426)
T ss_dssp EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE---ECS---SSSEEEEEETTTTEEEEEECSSSSSCEEEEEECC
T ss_pred EEEEcCCccceeEEeeccCCCccceeecCCCceeEEE---ECC---CCCEEEEecCCCCeEEEEEeccccceeeEEeccC
Confidence 99999999887665543221 1111222222211111 111 1222333444455666666544332222233456
Q ss_pred cCeEEEEEeCCCCceEEEEc-CCcEEEEEccCCCCee-------------------------------------------
Q 016769 262 EPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSC------------------------------------------- 297 (383)
Q Consensus 262 ~~v~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~------------------------------------------- 297 (383)
..+..+.+++++..++.+.. +..+.+++........
T Consensus 207 ~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~ 286 (426)
T d1hzua2 207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 286 (426)
T ss_dssp SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence 67778888888887666553 4446666653221100
Q ss_pred -------EEeeeeecCCCCeEEEEECCCCcEEEE-------EeCCCcEEEEEcCCCceEEEe---------cccccceeE
Q 016769 298 -------VIKKEINLERPGISGTSIRPDSKIAAT-------AGWDRRVRIYNYRKGSALAIL---------KYHHATCNA 354 (383)
Q Consensus 298 -------~~~~~~~~~~~~i~~~~~~p~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~---------~~h~~~v~~ 354 (383)
.....+..+...+..++|+||++++++ ++.|++|++||+.+++...++ ..|...|.+
T Consensus 287 ~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~ 366 (426)
T d1hzua2 287 NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ 366 (426)
T ss_dssp TCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEE
T ss_pred ccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEE
Confidence 011123344566888999999999994 556899999999988765443 245667999
Q ss_pred EEEeCCCCEE-EEE----eCCCcEEEEeCC
Q 016769 355 VSFSSDCKLM-ASA----SEDSTVALWELY 379 (383)
Q Consensus 355 v~~spd~~~l-as~----s~d~~i~~w~~~ 379 (383)
++|||||+++ +++ +.|+.|+|||..
T Consensus 367 ~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~ 396 (426)
T d1hzua2 367 PEYNKRGDEVWFSVWNGKNDSSALVVVDDK 396 (426)
T ss_dssp EEECSSSSEEEEEECCCTTSCCEEEEEETT
T ss_pred EEECCCCCEEEEEEecCCCCCCeEEEEECC
Confidence 9999999965 443 468899999974
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.89 E-value=2e-23 Score=188.50 Aligned_cols=286 Identities=10% Similarity=0.017 Sum_probs=171.1
Q ss_pred eecCCceeeEEEeCCCCeEEEecCCC--eEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEee
Q 016769 15 RGHRASVTDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 15 ~gH~~~V~~v~f~~~~~~L~sgs~D~--~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd 92 (383)
.+|...|++++|+|||++|++++.|. .|++||..+++... +..| ...+..++++| ++++|++++.|+.+++|+
T Consensus 39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~~~~--~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~ 113 (360)
T d1k32a3 39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-FEEN--LGNVFAMGVDR--NGKFAVVANDRFEIMTVD 113 (360)
T ss_dssp CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-CCCC--CCSEEEEEECT--TSSEEEEEETTSEEEEEE
T ss_pred ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-eeCC--CceEEeeeecc--cccccceecccccccccc
Confidence 37999999999999999998877664 79999998765432 2222 24577889998 478999999999999999
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
++++.... .+..+..... ...++++|. +
T Consensus 114 ~~~~~~~~----~~~~~~~~~~-----------------------------------------------~~~~spdg~-~ 141 (360)
T d1k32a3 114 LETGKPTV----IERSREAMIT-----------------------------------------------DFTISDNSR-F 141 (360)
T ss_dssp TTTCCEEE----EEECSSSCCC-----------------------------------------------CEEECTTSC-E
T ss_pred ccccceee----eeeccccccc-----------------------------------------------chhhcccee-e
Confidence 98764210 1100000000 001112221 1
Q ss_pred ee---------eccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEE
Q 016769 173 MA---------VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 243 (383)
Q Consensus 173 ~~---------~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~ 243 (383)
++ ..+..++.+++||+.+++........ .... ...+.|+. ..+++++.|+.++
T Consensus 142 la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~-----------~~~~---~~~~spdg----~~l~~~s~~~~~~ 203 (360)
T d1k32a3 142 IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN-----------SHDY---APAFDADS----KNLYYLSYRSLDP 203 (360)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSS-----------SBEE---EEEECTTS----CEEEEEESCCCCC
T ss_pred eeeeccccccceeeccccceeeeccccCceeeecccc-----------cccc---cccccCCC----CEEEEEeCCCceE
Confidence 11 23455678999999887643322211 1111 11344442 3578899999999
Q ss_pred EEeCCCCCCc------eeeeeccccCeEEEEEeCCCCceEEEEcCC---cEEEEEccCCCCeeEEeeeeecCCCCeEEEE
Q 016769 244 VWDIRNPGIP------LTAMKVHLEPVLCLSIDESCNGGISGGADQ---KIVLYNLDHSTGSCVIKKEINLERPGISGTS 314 (383)
Q Consensus 244 ~wdl~~~~~~------~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~---~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~ 314 (383)
+||....... ...+..|...+..+.+.+++..+.++..+. ..++|.+....+.... +......+..+.
T Consensus 204 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 280 (360)
T d1k32a3 204 SPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM---IIPLESSILIYS 280 (360)
T ss_dssp EECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEE---EEECSSEEEEEE
T ss_pred cccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeE---eeecCCCceEEE
Confidence 9997542210 111122222222233333333333222221 1234444333322211 112223344444
Q ss_pred ECC---CCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q 016769 315 IRP---DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 382 (383)
Q Consensus 315 ~~p---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~~ 382 (383)
+.+ +..++++++.++.|++||+.+++.. .|.+.|.+++|||||++|++++.||.|++||+..++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~ 347 (360)
T d1k32a3 281 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347 (360)
T ss_dssp CCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred EEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCC
Confidence 443 3457888899999999999887643 345568999999999999999999999999997654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=9.4e-22 Score=171.33 Aligned_cols=244 Identities=18% Similarity=0.315 Sum_probs=157.9
Q ss_pred CCCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCe
Q 016769 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (383)
Q Consensus 8 ~~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~t 87 (383)
-+++.+|++|++.|++|+| ++++|+||+.|+.|++|+...+........+. ..... ... ....++++..++.
T Consensus 45 ~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~--~~~~~--~~~--~~~~~~~~~~~~~ 116 (293)
T d1p22a2 45 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC--EAVLH--LRF--NNGMMVTCSKDRS 116 (293)
T ss_dssp CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCC--SCEEE--EEC--CTTEEEEEETTSC
T ss_pred CcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccc--ccccc--ccc--cccceeecccccc
Confidence 4577899999999999887 67899999999999999998765543322111 11112 222 2367889999999
Q ss_pred EEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCC
Q 016769 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPA 167 (383)
Q Consensus 88 i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (383)
+++|+..+..... .. ....... ..+ .....
T Consensus 117 ~~~~~~~~~~~~~----~~----------~~~~~~~---------~~v---------------------------~~~~~ 146 (293)
T d1p22a2 117 IAVWDMASPTDIT----LR----------RVLVGHR---------AAV---------------------------NVVDF 146 (293)
T ss_dssp EEEEECSSSSCCE----EE----------EEECCCS---------SCE---------------------------EEEEE
T ss_pred eeEeecccccccc----cc----------ccccccc---------ccc---------------------------cccee
Confidence 9999987643110 00 0000000 000 00000
Q ss_pred CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeC
Q 016769 168 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 247 (383)
Q Consensus 168 ~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl 247 (383)
.. ..+ .+++.|+.+++||+++.+.+..+.... ...... .+. ...+++++.||+|++||+
T Consensus 147 ~~-~~~-~~~s~d~~i~~~d~~~~~~~~~~~~~~----------~~v~~~---~~~------~~~l~~~~~dg~i~i~d~ 205 (293)
T d1p22a2 147 DD-KYI-VSASGDRTIKVWNTSTCEFVRTLNGHK----------RGIACL---QYR------DRLVVSGSSDNTIRLWDI 205 (293)
T ss_dssp ET-TEE-EEEETTSEEEEEETTTCCEEEEEECCS----------SCEEEE---EEE------TTEEEEEETTSCEEEEET
T ss_pred cc-ccc-ccccCCCceeeecCCCCcEEEEEcccc----------cccccc---cCC------CCeEEEecCCCEEEEEec
Confidence 11 122 334567899999999998777664321 111111 111 125889999999999999
Q ss_pred CCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCe-----eEEeeeeecCCCCeEEEEECCCCcEE
Q 016769 248 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS-----CVIKKEINLERPGISGTSIRPDSKIA 322 (383)
Q Consensus 248 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~-----~~~~~~~~~~~~~i~~~~~~p~~~~l 322 (383)
++. ..+.....|...+..+.. +...+++++.|+.|++||+...... ......+..|...|.+++|+ +++|
T Consensus 206 ~~~-~~~~~~~~~~~~v~~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l 280 (293)
T d1p22a2 206 ECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQI 280 (293)
T ss_dssp TTC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCE
T ss_pred ccc-eeeeeecccceeeeeccc--cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEE
Confidence 874 456667778777776554 4567899999999999998532110 11123345577789999884 5689
Q ss_pred EEEeCCCcEEEEE
Q 016769 323 ATAGWDRRVRIYN 335 (383)
Q Consensus 323 ~s~~~dg~i~iwd 335 (383)
++++.||+|++||
T Consensus 281 ~s~s~Dg~i~iWD 293 (293)
T d1p22a2 281 VSSSHDDTILIWD 293 (293)
T ss_dssp EECCSSSEEEEEC
T ss_pred EEEecCCEEEEeC
Confidence 9999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.8e-21 Score=173.10 Aligned_cols=250 Identities=16% Similarity=0.160 Sum_probs=156.1
Q ss_pred ceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCc
Q 016769 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (383)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
..|.+++|+| ++++|++++.|++||+||++++... ..+. ...+ .. . .+.
T Consensus 12 d~I~~l~fsp--~~~~L~s~s~Dg~v~iwd~~~~~~~----~~~~---------~~~~-h~-------~--~V~------ 60 (342)
T d1yfqa_ 12 DYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKN----VDLL---------QSLR-YK-------H--PLL------ 60 (342)
T ss_dssp SCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTE----EEEE---------EEEE-CS-------S--CEE------
T ss_pred CCEEEEEEeC--CCCEEEEEECCCeEEEEEccCCCcc----eEEE---------EecC-CC-------C--CEE------
Confidence 4689999998 4689999999999999999765321 0000 0000 00 0 000
Q ss_pred ccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEee
Q 016769 143 TVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 222 (383)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 222 (383)
...+.+++.. ++++|+.|++|++|++............. .....+.. .
T Consensus 61 -------------------~v~f~~~~~~-~l~sg~~d~~v~~w~~~~~~~~~~~~~~~---------~~~~~~~~---~ 108 (342)
T d1yfqa_ 61 -------------------CCNFIDNTDL-QIYVGTVQGEILKVDLIGSPSFQALTNNE---------ANLGICRI---C 108 (342)
T ss_dssp -------------------EEEEEESSSE-EEEEEETTSCEEEECSSSSSSEEECBSCC---------CCSCEEEE---E
T ss_pred -------------------EEEEeCCCCC-EEEEcccccceeeeecccccccccccccc---------cccccccc---c
Confidence 0011223333 45566778999999998877554443211 01111111 1
Q ss_pred cCCCCCCceEEEEEeCCCcEEEEeCCCCCCcee---eeecc--ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCee
Q 016769 223 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT---AMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC 297 (383)
Q Consensus 223 ~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~---~~~~h--~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~ 297 (383)
.+. ...+++++.|+++++||++....... ....+ ......+.+.+....+++++.|+.|++||+.......
T Consensus 109 ~~~----~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 184 (342)
T d1yfqa_ 109 KYG----DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184 (342)
T ss_dssp EET----TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC
T ss_pred ccc----cccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc
Confidence 111 12578899999999999865332111 11111 1233455566666778999999999999997654433
Q ss_pred EEeeeeecCCCCeEEEEE-CCCCcEEEEEeCCCcEEEEEcCCCce---------EE------EecccccceeEEEEeCCC
Q 016769 298 VIKKEINLERPGISGTSI-RPDSKIAATAGWDRRVRIYNYRKGSA---------LA------ILKYHHATCNAVSFSSDC 361 (383)
Q Consensus 298 ~~~~~~~~~~~~i~~~~~-~p~~~~l~s~~~dg~i~iwd~~~~~~---------~~------~~~~h~~~v~~v~~spd~ 361 (383)
..... ...........+ .+++..+++++.||++.+|+...... .. ...+|...|++++|+|++
T Consensus 185 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~ 263 (342)
T d1yfqa_ 185 GTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263 (342)
T ss_dssp CEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT
T ss_pred eeeee-cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc
Confidence 22222 222234445444 45677999999999999999864321 11 123567789999999999
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 016769 362 KLMASASEDSTVALWELYP 380 (383)
Q Consensus 362 ~~las~s~d~~i~~w~~~~ 380 (383)
++||||+.||.|++||+..
T Consensus 264 ~~lasg~~Dg~v~vWD~~~ 282 (342)
T d1yfqa_ 264 KFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp CCEEEEETTSCEEEEETTT
T ss_pred cEEEEECCCCEEEEEECCC
Confidence 9999999999999999853
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=2.5e-20 Score=163.18 Aligned_cols=236 Identities=14% Similarity=0.202 Sum_probs=156.0
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEee
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd 92 (383)
..++|+..|.+++|++++ .++|++.|+++++|+....+.. .....+.+.+ + ..++..+.++.+.+|+
T Consensus 41 ~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~---------~~~~~~~~~~--~-~~~~~~~~~~~~~~~~ 107 (287)
T d1pgua2 41 MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFG---------SQPKVASANN--D-GFTAVLTNDDDLLILQ 107 (287)
T ss_dssp EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECS---------SCEEEEEECS--S-SEEEEEETTSEEEEEE
T ss_pred CCCCCCCCEEEEEecCCC-eEEEEeeccccccccccccccc---------cceeeeeecc--C-CceEEEeecccceeee
Confidence 467999999999998765 6899999999999997653311 1233445554 2 3444445566788888
Q ss_pred cCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCce
Q 016769 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKY 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
..+++... .+.. ..+ ...+.+++ ..
T Consensus 108 ~~~~~~~~----~~~~-----------~~~---------------------------------------~~~~~~~~-~~ 132 (287)
T d1pgua2 108 SFTGDIIK----SVRL-----------NSP---------------------------------------GSAVSLSQ-NY 132 (287)
T ss_dssp TTTCCEEE----EEEC-----------SSC---------------------------------------EEEEEECS-SE
T ss_pred ccceeeee----eccc-----------cce---------------------------------------eeeeeccC-cc
Confidence 76653210 0000 000 00011222 24
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
+++++.+++.+++|++...+....+... ......++ .|.|+. ..+++|+.||.|++||+.+...
T Consensus 133 ~~v~~~~~~~v~~~~~~~~~~~~~~~~~---------~~~~v~~~---~~s~~~----~~l~~g~~dg~i~i~d~~~~~~ 196 (287)
T d1pgua2 133 VAVGLEEGNTIQVFKLSDLEVSFDLKTP---------LRAKPSYI---SISPSE----TYIAAGDVMGKILLYDLQSREV 196 (287)
T ss_dssp EEEEETTTSCEEEEETTEEEEEEECSSC---------CSSCEEEE---EECTTS----SEEEEEETTSCEEEEETTTTEE
T ss_pred eeeeccccceeeeeeccccceeeeeeec---------cCCceeEE---EeccCc----cccccccccccccceeeccccc
Confidence 5566666678999998765543333211 11122222 354442 3688999999999999987544
Q ss_pred ceeeeeccccCeEEEEEeCCC----------CceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEE
Q 016769 253 PLTAMKVHLEPVLCLSIDESC----------NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA 322 (383)
Q Consensus 253 ~~~~~~~h~~~v~~~~~~~~~----------~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l 322 (383)
....+..|..+|.+++|+|.. ..+++|+.|+.|++||++..... ...+..|...|++++|+|++ .|
T Consensus 197 ~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~---~~~~~~h~~~V~~v~~~~~~-~l 272 (287)
T d1pgua2 197 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI---IKALNAHKDGVNNLLWETPS-TL 272 (287)
T ss_dssp EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC---EEETTSSTTCEEEEEEEETT-EE
T ss_pred ccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE---EEEeCCCCCCeEEEEECCCC-EE
Confidence 444567899999999997643 46889999999999999754321 12344577889999999986 58
Q ss_pred EEEeCCCcEEEEEc
Q 016769 323 ATAGWDRRVRIYNY 336 (383)
Q Consensus 323 ~s~~~dg~i~iwd~ 336 (383)
++++.|++|++||+
T Consensus 273 ~s~g~D~~v~iW~i 286 (287)
T d1pgua2 273 VSSGADACIKRWNV 286 (287)
T ss_dssp EEEETTSCEEEEEE
T ss_pred EEEECCCeEEEEEE
Confidence 89999999999996
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.87 E-value=8.6e-21 Score=176.39 Aligned_cols=331 Identities=10% Similarity=0.016 Sum_probs=187.3
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccccccccc--c-cccceeeeeeecCCCCccee-Eeccc
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV--H-SAAHGIVSVATGPSIGLNKV-ISQGR 84 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l-~s~~~ 84 (383)
+.+.+|.+|. .+..|+|||||++|++++.|++|++||+.+++....... . .+...+.+..++| +++++ +++..
T Consensus 53 ~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp--DG~~l~v~~~~ 129 (426)
T d1hzua2 53 KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY--EDRYTIAGAYW 129 (426)
T ss_dssp SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC--TTTEEEEEEEE
T ss_pred cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC--CCCEEEEeecC
Confidence 4566787774 589999999999999999999999999988765432211 1 1222345667777 46665 55679
Q ss_pred CCeEEEeecCCCCCCCCCeeeeecCce--eeeeEEeeccccccccccCCCCccceec-cCccccc---C-cccccc-ccC
Q 016769 85 DGTVKCWDIENGGLSSNPSLTIKTNSY--HFCKLSLVKEPYANAKQANEPKDCYERE-VGETVDT---D-SLCDSK-ESN 156 (383)
Q Consensus 85 D~ti~~Wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~-~~~~~~-~~~ 156 (383)
++++++||.+++.... ....+.. ....+.........+.........+... .+..... . ...... ...
T Consensus 130 ~~~v~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 205 (426)
T d1hzua2 130 PPQFAIMDGETLEPKQ----IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA 205 (426)
T ss_dssp SSEEEEEETTTCCEEE----EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEEC
T ss_pred CCeEEEEcCCccceeE----EeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEecc
Confidence 9999999998875321 1100000 0000000000000000000000000000 0000000 0 000000 000
Q ss_pred CccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEE
Q 016769 157 RSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 236 (383)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 236 (383)
........+.+++ +++.++......+.+|++.+++.+......... . ...... +.. ...+....++.
T Consensus 206 ~~~~~~~~~~~~g-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~---~~~-~~~~~~~~~~~ 272 (426)
T d1hzua2 206 APFLADGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP------H--PGRGAN---FVH-PKYGPVWSTSH 272 (426)
T ss_dssp CSSEEEEEECTTS-CEEEEEETTCSEEEEEETTTTEEEEEEECSSCC------C--CSCCEE---EEE-TTTEEEEEEEC
T ss_pred CCccEeeeECCCC-cEEEeeeecccceeeeecccccEEEEeccCCcc------c--ccceee---eec-CCCCceEEecc
Confidence 0111112344555 456666667788999999998876655432110 0 001111 100 01112223345
Q ss_pred eCCCcEEEEeCCCCC------CceeeeeccccCeEEEEEeCCCCceEE-------EEcCCcEEEEEccCCCCeeEEee--
Q 016769 237 YEDGSILVWDIRNPG------IPLTAMKVHLEPVLCLSIDESCNGGIS-------GGADQKIVLYNLDHSTGSCVIKK-- 301 (383)
Q Consensus 237 ~~dg~i~~wdl~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~s-------~~~d~~i~~wdl~~~~~~~~~~~-- 301 (383)
+.|+.+.+|+..... .....+.+|...+..++|+|++..+++ ++.|++|++||++.......+..
T Consensus 273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~ 352 (426)
T d1hzua2 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA 352 (426)
T ss_dssp TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence 668888888865431 335667889999999999999998873 55689999999976543322211
Q ss_pred ---eeecCCCCeEEEEECCCCcEEEEE-----eCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEE
Q 016769 302 ---EINLERPGISGTSIRPDSKIAATA-----GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMA 365 (383)
Q Consensus 302 ---~~~~~~~~i~~~~~~p~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~la 365 (383)
.+..+...+..++|+|||++++.+ +.|++|+|||..+++....+.++. .++|+|++-+
T Consensus 353 ~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 353 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp HHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred hhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence 011234468889999999977543 358899999999999988888775 2478887743
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.83 E-value=7.1e-18 Score=147.72 Aligned_cols=264 Identities=13% Similarity=0.148 Sum_probs=174.2
Q ss_pred EEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCccee-EecccCCeEEEeecCCCCCCCCCeeeeecCcee
Q 016769 34 FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH 112 (383)
Q Consensus 34 ~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~ 112 (383)
++++.|++|+|||+.+++.+..+... .....++++| +++++ ++++.+++|++||+++++... .+..+
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g---~~p~~va~sp--dG~~l~v~~~~~~~i~v~d~~t~~~~~----~~~~~--- 73 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG---SNPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIA----TVPAG--- 73 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS---SSEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEE----EEECS---
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC---CCceEEEEeC--CCCEEEEEECCCCEEEEEECCCCceee----eeecc---
Confidence 46789999999999988766655332 2345678888 45665 678899999999998764211 00000
Q ss_pred eeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCC
Q 016769 113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 192 (383)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~ 192 (383)
..+ ....+.+++. .+++++..+..+++|++.+++
T Consensus 74 -------~~~--------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 107 (301)
T d1l0qa2 74 -------SSP--------------------------------------QGVAVSPDGK-QVYVTNMASSTLSVIDTTSNT 107 (301)
T ss_dssp -------SSE--------------------------------------EEEEECTTSS-EEEEEETTTTEEEEEETTTTE
T ss_pred -------ccc--------------------------------------cccccccccc-cccccccccceeeecccccce
Confidence 000 0011223333 445566677899999999988
Q ss_pred eeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCC
Q 016769 193 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES 272 (383)
Q Consensus 193 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~ 272 (383)
....+.... ...++ .+.++ +...++++..++.+.+|+..+.. ....+. +...+..+.++++
T Consensus 108 ~~~~~~~~~-----------~~~~~---~~~~d---g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ 168 (301)
T d1l0qa2 108 VAGTVKTGK-----------SPLGL---ALSPD---GKKLYVTNNGDKTVSVINTVTKA-VINTVS-VGRSPKGIAVTPD 168 (301)
T ss_dssp EEEEEECSS-----------SEEEE---EECTT---SSEEEEEETTTTEEEEEETTTTE-EEEEEE-CCSSEEEEEECTT
T ss_pred eeeeccccc-----------cceEE---EeecC---CCeeeeeeccccceeeeeccccc-eeeecc-cCCCceEEEeecc
Confidence 766664311 11111 23333 23345677889999999987743 333343 3345778889998
Q ss_pred CCceEEEEcCC-cEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC---CCcEEEEEcCCCceEEEeccc
Q 016769 273 CNGGISGGADQ-KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW---DRRVRIYNYRKGSALAILKYH 348 (383)
Q Consensus 273 ~~~~~s~~~d~-~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~h 348 (383)
+..+++++.+. .+.+|+..... .. .... ....+..++|+++++.++.++. +++|++||+.+++.+..+..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~ 243 (301)
T d1l0qa2 169 GTKVYVANFDSMSISVIDTVTNS--VI--DTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243 (301)
T ss_dssp SSEEEEEETTTTEEEEEETTTTE--EE--EEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC
T ss_pred ccceeeeccccccccccccccee--ee--eccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC
Confidence 88887777664 45566654332 11 1111 2345788999999998766543 468999999999988877644
Q ss_pred ccceeEEEEeCCCCEE-EEEeCCCcEEEEeCCC
Q 016769 349 HATCNAVSFSSDCKLM-ASASEDSTVALWELYP 380 (383)
Q Consensus 349 ~~~v~~v~~spd~~~l-as~s~d~~i~~w~~~~ 380 (383)
..+.+++|+|||++| ++++.|+.|++||+..
T Consensus 244 -~~~~~va~spdg~~l~va~~~~~~i~v~D~~t 275 (301)
T d1l0qa2 244 -PDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275 (301)
T ss_dssp -SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred -CCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 467999999999975 7888999999999854
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=4.9e-18 Score=157.78 Aligned_cols=294 Identities=12% Similarity=-0.013 Sum_probs=179.0
Q ss_pred eCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCCCCCeeee
Q 016769 27 HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTI 106 (383)
Q Consensus 27 ~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~~~~~~~~ 106 (383)
+++.-++++.+.||+|.|||..+++.+..+..+. .+..++|+| +++++++++.|+++++||+.+++... ...+
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~---~~~~v~fSp--DG~~l~~~s~dg~v~~~d~~t~~~~~--~~~i 101 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTT--VAEI 101 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCE--EEEE
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC---CeeEEEECC--CCCEEEEEcCCCCEEEEEeeCCCceE--EEEE
Confidence 3343346899999999999999988887765442 466789999 57899999999999999998764211 1111
Q ss_pred ecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEE
Q 016769 107 KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIW 186 (383)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~W 186 (383)
.....+. .......++++|+ ++++++..++++++|
T Consensus 102 ~~~~~~~--------------------------------------------~~~~s~~~SpDG~-~l~vs~~~~~~v~i~ 136 (432)
T d1qksa2 102 KIGSEAR--------------------------------------------SIETSKMEGWEDK-YAIAGAYWPPQYVIM 136 (432)
T ss_dssp ECCSEEE--------------------------------------------EEEECCSTTCTTT-EEEEEEEETTEEEEE
T ss_pred ecCCCCC--------------------------------------------CeEEecccCCCCC-EEEEEcCCCCeEEEE
Confidence 1111100 0011123445664 566677778999999
Q ss_pred ecCCCCeeeEeccCcC-CCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeee-ccccCe
Q 016769 187 DLNTAERCTRLHQNSC-GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPV 264 (383)
Q Consensus 187 dl~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~-~h~~~v 264 (383)
|.++++.+..+..... .....+.+.++...+ .+.+. +...+++...++.|.+||..+... ..... .+....
T Consensus 137 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~s~d---g~~~~vs~~~~~~i~~~d~~~~~~-~~~~~i~~g~~~ 209 (432)
T d1qksa2 137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI---LASHY---RPEFIVNVKETGKILLVDYTDLNN-LKTTEISAERFL 209 (432)
T ss_dssp ETTTCCEEEEEECCEECTTTCCEESCCCEEEE---EECSS---SSEEEEEETTTTEEEEEETTCSSE-EEEEEEECCSSE
T ss_pred eCccccceeeeccCCccccceeccCCCceeEE---EECCC---CCEEEEEEccCCeEEEEEccCCCc-ceEEEEcccCcc
Confidence 9999997766653221 112222233332221 13332 334567788899999999876432 22222 234567
Q ss_pred EEEEEeCCCCceEEEEc-CCcEEEEEccCCCCeeEE-----------------------eeee-----------------
Q 016769 265 LCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVI-----------------------KKEI----------------- 303 (383)
Q Consensus 265 ~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~-----------------------~~~~----------------- 303 (383)
..+.+++++.++++++. ++.+.++|.+........ ....
T Consensus 210 ~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~ 289 (432)
T d1qksa2 210 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 289 (432)
T ss_dssp EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred ccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccc
Confidence 88999999998777665 456778876532110000 0000
Q ss_pred ecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCc------------------------eEEE--------ecccccc
Q 016769 304 NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS------------------------ALAI--------LKYHHAT 351 (383)
Q Consensus 304 ~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~------------------------~~~~--------~~~h~~~ 351 (383)
..+...+....++|++..+++++.+++.++|+..+.. .++. +..|...
T Consensus 290 ~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~ 369 (432)
T d1qksa2 290 PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPR 369 (432)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCE
T ss_pred cccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCc
Confidence 0011234555677777777777777777777553211 1111 2246667
Q ss_pred eeEEEEeCCCCEEEEEe-----CCCcEEEEeCC
Q 016769 352 CNAVSFSSDCKLMASAS-----EDSTVALWELY 379 (383)
Q Consensus 352 v~~v~~spd~~~las~s-----~d~~i~~w~~~ 379 (383)
+.+++|||||++++.+. .|+.|+|||..
T Consensus 370 v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~ 402 (432)
T d1qksa2 370 VVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK 402 (432)
T ss_dssp EEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred EEEeEECCCCCEEEEEEecCCCCCCcEEEEECC
Confidence 88999999999775443 46889999853
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=5.8e-18 Score=150.56 Aligned_cols=274 Identities=12% Similarity=0.109 Sum_probs=163.5
Q ss_pred CeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCccee-EecccCCeEEEeecCCCCCCCCCeeeeecC
Q 016769 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (383)
Q Consensus 31 ~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~ 109 (383)
++|++++.|++|+|||..+.+.+..+..+........++++| +++++ ++++.|++|.+||+++++... .+...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp--Dg~~l~v~~~~~~~v~v~D~~t~~~~~----~~~~~ 75 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVTGETLG----RIDLS 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTTCCEEE----EEECC
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECC--CCCEEEEEECCCCeEEEEECCCCcEEE----EEecC
Confidence 589999999999999999888777665544444566788888 45665 577889999999999875321 11100
Q ss_pred ceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeec-----------cC
Q 016769 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVA-----------GE 178 (383)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~ 178 (383)
.... ....+.. ..++++++. ++++ ..
T Consensus 76 ~~~~----~~~~~~~--------------------------------------v~~s~dg~~-l~~~~~~~~~~~~~~~~ 112 (337)
T d1pbyb_ 76 TPEE----RVKSLFG--------------------------------------AALSPDGKT-LAIYESPVRLELTHFEV 112 (337)
T ss_dssp BTTE----EEECTTC--------------------------------------EEECTTSSE-EEEEEEEEEECSSCEEE
T ss_pred CCcc----cccceee--------------------------------------EEEcCCCcE-EEEeecCCcceeeeccc
Confidence 0000 0000000 011122211 1111 11
Q ss_pred CcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeee
Q 016769 179 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 258 (383)
Q Consensus 179 ~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~ 258 (383)
.+..+.+||..+......+.....+ .. + .+.++. ..+++++ +.+.+||..+... ...+.
T Consensus 113 ~~~~~~~~d~~~~~~~~~~~~~~~~---------~~--~---~~s~dg----~~l~~~~--~~~~~~d~~~~~~-~~~~~ 171 (337)
T d1pbyb_ 113 QPTRVALYDAETLSRRKAFEAPRQI---------TM--L---AWARDG----SKLYGLG--RDLHVMDPEAGTL-VEDKP 171 (337)
T ss_dssp CCCEEEEEETTTTEEEEEEECCSSC---------CC--E---EECTTS----SCEEEES--SSEEEEETTTTEE-EEEEC
T ss_pred cccceeeccccCCeEEEeccccCCc---------eE--E---EEcCCC----CEEEEEc--CCcceeeeecCcE-EEEee
Confidence 3467899999998876665432111 11 1 133332 2355554 4578899875321 22221
Q ss_pred ccccC-----------------------eEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEE
Q 016769 259 VHLEP-----------------------VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 315 (383)
Q Consensus 259 ~h~~~-----------------------v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (383)
.+... ..................++.+.+|++.... ... ............+.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~ 248 (337)
T d1pbyb_ 172 IQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAM-REVRIMDVFYFSTAV 248 (337)
T ss_dssp STTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEE-EEEEECSSCEEEEEE
T ss_pred cCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc--EEE-EEecCCCcceEEEEe
Confidence 11100 0000111111111222334567888876543 221 122234456788899
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 316 RPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 316 ~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+|++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.|+.|++||...
T Consensus 249 ~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t 310 (337)
T d1pbyb_ 249 NPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp CTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred cccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 9999988765 6899999999999988774 667789999999999999999999999999853
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.77 E-value=2.3e-17 Score=147.21 Aligned_cols=283 Identities=8% Similarity=0.023 Sum_probs=163.2
Q ss_pred EEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCccee-EecccCCeEEEeecCCCCCCCCC
Q 016769 24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNP 102 (383)
Q Consensus 24 v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~ti~~Wd~~~~~~~~~~ 102 (383)
++|++++++|++++.|++|.|||+.+++.+..+..+. ......++++| +++++ ++++.+++|++||+++++...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~-~~~p~~l~~sp--DG~~l~v~~~~~~~v~~~d~~t~~~~~-- 76 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-KFGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTF-- 76 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS-CCSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEE--
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCC-CCCcceEEECC--CCCEEEEEECCCCcEEEEeCccCeeee--
Confidence 5899999999999999999999999887776554321 12345788888 45655 677889999999998874211
Q ss_pred eeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeec------
Q 016769 103 SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVA------ 176 (383)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 176 (383)
.+...... ......+. ...++++|+. +.++
T Consensus 77 --~~~~~~~~---~~~~~~~~--------------------------------------~v~~s~DG~~-l~v~~~~~~~ 112 (346)
T d1jmxb_ 77 --HANLSSVP---GEVGRSMY--------------------------------------SFAISPDGKE-VYATVNPTQR 112 (346)
T ss_dssp --EEESCCST---TEEEECSS--------------------------------------CEEECTTSSE-EEEEEEEEEE
T ss_pred --eecccccc---cccCCceE--------------------------------------EEEEecCCCE-EEEEecCCcc
Confidence 10000000 00000000 0012233322 1111
Q ss_pred -----cCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC
Q 016769 177 -----GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251 (383)
Q Consensus 177 -----g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~ 251 (383)
...+..+.+||..+++....+.... .+....+ . .+.+ +. .++.. ++.+.+||+.+..
T Consensus 113 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~-~---~~~~----~~-~~~~~--~~~~~~~~~~~~~ 174 (346)
T d1jmxb_ 113 LNDHYVVKPPRLEVFSTADGLEAKPVRTFP-------MPRQVYL-M---RAAD----DG-SLYVA--GPDIYKMDVKTGK 174 (346)
T ss_dssp CSSCEEECCCEEEEEEGGGGGGBCCSEEEE-------CCSSCCC-E---EECT----TS-CEEEE--SSSEEEECTTTCC
T ss_pred eeeeeccCcceEEEEecccceeeeEEEeee-------ccCceEE-E---EecC----CC-EEEEe--CCcceEEEccCCC
Confidence 1234678889887766443322110 0001100 0 0111 11 13332 3568888886632
Q ss_pred CceeeeeccccCeEEEEEeCC--------------------------CCceEEEEcCCcEEEEEccCCCCeeEEeeeeec
Q 016769 252 IPLTAMKVHLEPVLCLSIDES--------------------------CNGGISGGADQKIVLYNLDHSTGSCVIKKEINL 305 (383)
Q Consensus 252 ~~~~~~~~h~~~v~~~~~~~~--------------------------~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~ 305 (383)
.+..+..+.. ...+.+.+. ...+.++..+..+.+||+....... .....
T Consensus 175 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 249 (346)
T d1jmxb_ 175 -YTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT---QEFAD 249 (346)
T ss_dssp -EEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE---EEEEE
T ss_pred -EEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEE---EEeec
Confidence 2333322211 011111111 1112333445667788876543211 22233
Q ss_pred CCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 306 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 306 ~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
+...+....+++++.+++... ++.|++||+.+++.+..+. +...+.+++|||||++|++++.|+.|++||+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 250 LTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322 (346)
T ss_dssp CSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred ccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence 445678888898888877665 5679999999999887764 556799999999999999999999999999853
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=7.4e-18 Score=156.56 Aligned_cols=87 Identities=14% Similarity=-0.044 Sum_probs=63.1
Q ss_pred CCeeeeeecCCceeeEEEeCCCCeEEEecCCCeEEEeeCccccccc--ccccc-cccceeeeeeecCCCCccee-Eeccc
Q 016769 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS--SSWVH-SAAHGIVSVATGPSIGLNKV-ISQGR 84 (383)
Q Consensus 9 ~~~~~l~gH~~~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~l-~s~~~ 84 (383)
+.+.++..|. .|..++|||||++|++++.|++|++||+.+++... .+... .+...+.+..++| ++++| ++++.
T Consensus 53 ~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~Sp--DG~~l~vs~~~ 129 (432)
T d1qksa2 53 EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW--EDKYAIAGAYW 129 (432)
T ss_dssp CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC--TTTEEEEEEEE
T ss_pred cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCC--CCCEEEEEcCC
Confidence 4566777774 68999999999999999999999999987765322 22111 1112334456666 46665 68889
Q ss_pred CCeEEEeecCCCCC
Q 016769 85 DGTVKCWDIENGGL 98 (383)
Q Consensus 85 D~ti~~Wd~~~~~~ 98 (383)
|+++++||.++++.
T Consensus 130 ~~~v~i~d~~t~~~ 143 (432)
T d1qksa2 130 PPQYVIMDGETLEP 143 (432)
T ss_dssp TTEEEEEETTTCCE
T ss_pred CCeEEEEeCccccc
Confidence 99999999988753
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.73 E-value=6.5e-15 Score=133.06 Aligned_cols=296 Identities=8% Similarity=-0.025 Sum_probs=175.1
Q ss_pred eeeeecCCceeeEEEeCCCCeEEEe-----cCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEec----
Q 016769 12 AVLRGHRASVTDVCFHQTKPILFAG-----TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ---- 82 (383)
Q Consensus 12 ~~l~gH~~~V~~v~f~~~~~~L~sg-----s~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---- 82 (383)
....+|.+++..++++|||+.++.. +.++.|.+||..+++.+..+..+. ...+.++| ++++++.+
T Consensus 14 ~a~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~----~~~~a~Sp--DG~~l~va~~~~ 87 (373)
T d2madh_ 14 LAAGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----LPNPVAAH--SGSEFALASTSF 87 (373)
T ss_pred hhcccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC----CccEEEcC--CCCEEEEEeecC
Confidence 3456789999999999999988754 334679999998888776554332 22577888 46666654
Q ss_pred ------ccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccC
Q 016769 83 ------GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESN 156 (383)
Q Consensus 83 ------~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (383)
..+++|++||..+++... .+..... .... ....+
T Consensus 88 ~~~~~~~~~~~v~v~D~~t~~~~~----~~~~~~~----------~~~~--~~~~~------------------------ 127 (373)
T d2madh_ 88 SRIAKGKRTDYVEVFDPVTFLPIA----DIELPDA----------PRFD--VGPYS------------------------ 127 (373)
T ss_pred CcccccccceEEEEEECCCCcEEE----EEecCCc----------ceeE--eccCC------------------------
Confidence 356889999998774211 0000000 0000 00000
Q ss_pred CccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEE
Q 016769 157 RSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 236 (383)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 236 (383)
....+.++++..++.....++.+.+|+..+.+....... ..+. .+.+. +...+++.
T Consensus 128 ----~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~---~~s~~---g~~~~v~~ 183 (373)
T d2madh_ 128 ----WMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS--------------PTCY---HIHPG---APSTFYLL 183 (373)
T ss_pred ----CcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEecc--------------ceeE---EEecC---CCcEEEEE
Confidence 001123444443444434456788898877664433321 1111 12232 22346778
Q ss_pred eCCCcEEEEeCCCCCCceeeeeccc----c--CeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeee-------
Q 016769 237 YEDGSILVWDIRNPGIPLTAMKVHL----E--PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI------- 303 (383)
Q Consensus 237 ~~dg~i~~wdl~~~~~~~~~~~~h~----~--~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~------- 303 (383)
+.|+++.+||...... ......+. . ....+.+++.+ .++..+.++.+.+|+..............
T Consensus 184 ~~dg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (373)
T d2madh_ 184 CAQGGLAKTDHAGGAA-GAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKA 261 (373)
T ss_pred cCCCeEEEEEcCCcee-eEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEe
Confidence 8999999999876432 22222211 1 12233445443 34566788889999876543221111100
Q ss_pred -ecCCCCeEEEEECCCCc----------EEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCC--EEEEEeCC
Q 016769 304 -NLERPGISGTSIRPDSK----------IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK--LMASASED 370 (383)
Q Consensus 304 -~~~~~~i~~~~~~p~~~----------~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~--~las~s~d 370 (383)
.........++++|++. .++....++.+.+||..+++.+..+. +...+.+++|+|||+ ++++++.|
T Consensus 262 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d 340 (373)
T d2madh_ 262 DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGT 340 (373)
T ss_pred eeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCC
Confidence 00111223344555544 34556677899999999999888775 667799999999998 45789999
Q ss_pred CcEEEEeCCC
Q 016769 371 STVALWELYP 380 (383)
Q Consensus 371 ~~i~~w~~~~ 380 (383)
+.|++||+..
T Consensus 341 ~~v~v~D~~t 350 (373)
T d2madh_ 341 EVLHIYDAGA 350 (373)
T ss_pred CeEEEEECCC
Confidence 9999999864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=1e-15 Score=135.72 Aligned_cols=270 Identities=9% Similarity=0.036 Sum_probs=158.6
Q ss_pred CCeeeeee--cCCceeeEEEeCCCCeE-EEecCCCeEEEeeCccccccccccccccc---ceeeeeeecCCCCcceeEec
Q 016769 9 DPVAVLRG--HRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAA---HGIVSVATGPSIGLNKVISQ 82 (383)
Q Consensus 9 ~~~~~l~g--H~~~V~~v~f~~~~~~L-~sgs~D~~v~vW~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~ 82 (383)
+.+.++.. +...+.+++|+|||++| ++++.|+.|.+||+.+++.+.....+... .....+++++ ++..++.+
T Consensus 22 ~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~--dg~~l~~~ 99 (337)
T d1pbyb_ 22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP--DGKTLAIY 99 (337)
T ss_dssp EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT--TSSEEEEE
T ss_pred eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC--CCcEEEEe
Confidence 34555554 34567899999999987 57789999999999988776554433221 1234567777 45666666
Q ss_pred ccC------------CeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccc
Q 016769 83 GRD------------GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC 150 (383)
Q Consensus 83 ~~D------------~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (383)
+.+ ..+.+||..++.... .+.. ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~----------------~~~~-~~--------------------------- 135 (337)
T d1pbyb_ 100 ESPVRLELTHFEVQPTRVALYDAETLSRRK----------------AFEA-PR--------------------------- 135 (337)
T ss_dssp EEEEEECSSCEEECCCEEEEEETTTTEEEE----------------EEEC-CS---------------------------
T ss_pred ecCCcceeeeccccccceeeccccCCeEEE----------------eccc-cC---------------------------
Confidence 544 445555554432100 0000 00
Q ss_pred cccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCce--------eeEE--E
Q 016769 151 DSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM--------CMAV--Q 220 (383)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~--------~~~~--~ 220 (383)
......++++++ ++++++ +.+.+||..+++....+..........+.+.+..+ .... .
T Consensus 136 --------~~~~~~~s~dg~-~l~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (337)
T d1pbyb_ 136 --------QITMLAWARDGS-KLYGLG---RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFY 203 (337)
T ss_dssp --------SCCCEEECTTSS-CEEEES---SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEE
T ss_pred --------CceEEEEcCCCC-EEEEEc---CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeee
Confidence 000012334554 344443 34788999998876665432221111111111000 0000 0
Q ss_pred eecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEe
Q 016769 221 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK 300 (383)
Q Consensus 221 ~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~ 300 (383)
....... ....+..++.+.+||+.+.......+..+...+..+.+.+++..++. .++.|++||+.... ...
T Consensus 204 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~v~d~~~~~--~~~- 274 (337)
T d1pbyb_ 204 TARKDID----PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKNA--SIK- 274 (337)
T ss_dssp EEBTTSC----TTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE--EESEEEEEETTTTE--EEE-
T ss_pred eeeeccc----eeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEE--ccccEEEEECCCCc--EEE-
Confidence 0000000 01123345678999988765444445556677788888888775544 46899999987543 222
Q ss_pred eeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecc
Q 016769 301 KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY 347 (383)
Q Consensus 301 ~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 347 (383)
... ....+.+++|+|||++|++++.|++|++||..+++.+.+++-
T Consensus 275 -~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 275 -RVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp -EEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred -EEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 222 235688999999999999999999999999999999887753
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.72 E-value=1.2e-14 Score=126.65 Aligned_cols=254 Identities=15% Similarity=0.178 Sum_probs=159.3
Q ss_pred eeeeeecCCceeeEEEeCCCCeE-EEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEE
Q 016769 11 VAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (383)
Q Consensus 11 ~~~l~gH~~~V~~v~f~~~~~~L-~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~ 89 (383)
+.++.. .+.+..++|+|||++| ++++.++.|++||+.+++.+..+..+. ....+.+.++ +...++++..++.++
T Consensus 25 ~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~ 99 (301)
T d1l0qa2 25 TATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS---SPQGVAVSPD-GKQVYVTNMASSTLS 99 (301)
T ss_dssp EEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS---SEEEEEECTT-SSEEEEEETTTTEEE
T ss_pred EEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc---cccccccccc-cccccccccccceee
Confidence 344443 3457889999999987 578889999999998887766544332 3455667663 223456778899999
Q ss_pred EeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCC
Q 016769 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEG 169 (383)
Q Consensus 90 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (383)
+|+..+++... .+... .. .....+.+++
T Consensus 100 ~~~~~~~~~~~----~~~~~----------~~--------------------------------------~~~~~~~~dg 127 (301)
T d1l0qa2 100 VIDTTSNTVAG----TVKTG----------KS--------------------------------------PLGLALSPDG 127 (301)
T ss_dssp EEETTTTEEEE----EEECS----------SS--------------------------------------EEEEEECTTS
T ss_pred ecccccceeee----ecccc----------cc--------------------------------------ceEEEeecCC
Confidence 99987663110 00000 00 0001123444
Q ss_pred CceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCC
Q 016769 170 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 249 (383)
Q Consensus 170 ~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~ 249 (383)
. .+++++..++.+.+|+..+......+.... ..... .+.++. ...++++..++.+.+|+...
T Consensus 128 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~ 189 (301)
T d1l0qa2 128 K-KLYVTNNGDKTVSVINTVTKAVINTVSVGR-----------SPKGI---AVTPDG---TKVYVANFDSMSISVIDTVT 189 (301)
T ss_dssp S-EEEEEETTTTEEEEEETTTTEEEEEEECCS-----------SEEEE---EECTTS---SEEEEEETTTTEEEEEETTT
T ss_pred C-eeeeeeccccceeeeeccccceeeecccCC-----------CceEE---Eeeccc---cceeeecccccccccccccc
Confidence 3 455566677899999999988766554311 11111 233322 22344455567777887665
Q ss_pred CCCceeeeeccccCeEEEEEeCCCCceEEEEc---CCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEE-EEE
Q 016769 250 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGA---DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA-ATA 325 (383)
Q Consensus 250 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~---d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l-~s~ 325 (383)
.........+ .....+.+++++..++.++. ++.|.+||+.... .. ..+.. ...+.+++|+|||++| +++
T Consensus 190 -~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~--~~--~~~~~-~~~~~~va~spdg~~l~va~ 262 (301)
T d1l0qa2 190 -NSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK--IT--ARIPV-GPDPAGIAVTPDGKKVYVAL 262 (301)
T ss_dssp -TEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE--EE--EEEEC-CSSEEEEEECTTSSEEEEEE
T ss_pred -eeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCe--EE--EEEcC-CCCEEEEEEeCCCCEEEEEE
Confidence 3333333333 34567888888887765543 4679999986542 22 12222 3468999999999976 677
Q ss_pred eCCCcEEEEEcCCCceEEEec
Q 016769 326 GWDRRVRIYNYRKGSALAILK 346 (383)
Q Consensus 326 ~~dg~i~iwd~~~~~~~~~~~ 346 (383)
+.|++|++||+.+++.+.++.
T Consensus 263 ~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 263 SFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEE
T ss_pred CCCCeEEEEECCCCeEEEEEe
Confidence 789999999999999887774
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.69 E-value=8.4e-15 Score=130.17 Aligned_cols=276 Identities=10% Similarity=0.003 Sum_probs=159.6
Q ss_pred CCeeeee-ecCCceeeEEEeCCCCeE-EEecCCCeEEEeeCcccccccccccccc----cceeeeeeecCCCCcceeEec
Q 016769 9 DPVAVLR-GHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSA----AHGIVSVATGPSIGLNKVISQ 82 (383)
Q Consensus 9 ~~~~~l~-gH~~~V~~v~f~~~~~~L-~sgs~D~~v~vW~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~s~ 82 (383)
+++.+++ .|...+.+++|+|||++| ++++.++.|++||..+++.+........ ......+++++ ++++++.+
T Consensus 29 ~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~--DG~~l~v~ 106 (346)
T d1jmxb_ 29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYAT 106 (346)
T ss_dssp EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEEE
T ss_pred CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec--CCCEEEEE
Confidence 3455665 566778999999999976 6677899999999988766543322111 11234567777 45666555
Q ss_pred cc------------CCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccc
Q 016769 83 GR------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC 150 (383)
Q Consensus 83 ~~------------D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (383)
+. +..+++|+.+++...... .....+.
T Consensus 107 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------------~~~~~~~--------------------------- 145 (346)
T d1jmxb_ 107 VNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--------------RTFPMPR--------------------------- 145 (346)
T ss_dssp EEEEEECSSCEEECCCEEEEEEGGGGGGBCCS--------------EEEECCS---------------------------
T ss_pred ecCCcceeeeeccCcceEEEEecccceeeeEE--------------EeeeccC---------------------------
Confidence 43 445555555443211000 0000000
Q ss_pred cccccCCccceecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCcee----------eE-E
Q 016769 151 DSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMC----------MA-V 219 (383)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~----------~~-~ 219 (383)
... ....+. +.++ .+.+ +.+.+||+.+++.+..+..........+.+.+..+. .. .
T Consensus 146 -------~~~-~~~~~~-~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (346)
T d1jmxb_ 146 -------QVY-LMRAAD-DGSL-YVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT 212 (346)
T ss_dssp -------SCC-CEEECT-TSCE-EEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEE
T ss_pred -------ceE-EEEecC-CCEE-EEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeee
Confidence 000 001112 2222 2332 347889998888776665433222222222211110 00 0
Q ss_pred EeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEE
Q 016769 220 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI 299 (383)
Q Consensus 220 ~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~ 299 (383)
..... .....+.++..++.+.+||+.+..........|...+....+++.+..++... ++.|.+||+... ....
T Consensus 213 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~--~~~~ 286 (346)
T d1jmxb_ 213 IARFK---DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR--KLIK 286 (346)
T ss_dssp EEEC----------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT--EEEE
T ss_pred eeeec---cCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCC--cEEE
Confidence 00000 01112344556778999999876544455566777888888888877766554 567999998654 2222
Q ss_pred eeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccc
Q 016769 300 KKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH 349 (383)
Q Consensus 300 ~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~ 349 (383)
... ....+.+++|+|||+++++++.|+.|++||+.+++.+.+++-..
T Consensus 287 --~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 287 --AAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp --EEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred --EEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence 122 23468899999999999999999999999999999998886433
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.69 E-value=3.6e-16 Score=140.15 Aligned_cols=188 Identities=13% Similarity=0.088 Sum_probs=136.7
Q ss_pred cccCC-CCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEe-CC-
Q 016769 163 DDVPA-EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-ED- 239 (383)
Q Consensus 163 ~~~~~-~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~-~d- 239 (383)
.+++| +|+. ++.++ .+.|++||++.+.... +.+ .....+ ..|.|+. ..+++++ .+
T Consensus 8 ~~fSP~dG~~-~a~~~--~g~v~v~d~~~~~~~~-~~~-----------~~~v~~---~~~spDg----~~l~~~~~~~g 65 (360)
T d1k32a3 8 EDFSPLDGDL-IAFVS--RGQAFIQDVSGTYVLK-VPE-----------PLRIRY---VRRGGDT----KVAFIHGTREG 65 (360)
T ss_dssp EEEEECGGGC-EEEEE--TTEEEEECTTSSBEEE-CSC-----------CSCEEE---EEECSSS----EEEEEEEETTE
T ss_pred ccccCCCCCE-EEEEE--CCeEEEEECCCCcEEE-ccC-----------CCCEEE---EEECCCC----CEEEEEEcCCC
Confidence 34566 5653 44432 4689999998876432 321 122222 2366643 3455544 44
Q ss_pred CcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCC
Q 016769 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 319 (383)
Q Consensus 240 g~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 319 (383)
..|++||++++. ...+..|...+.++.|++++..+++++.++.+++|+++..... .....+...+.+++|+|||
T Consensus 66 ~~v~v~d~~~~~--~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~spdg 139 (360)
T d1k32a3 66 DFLGIYDYRTGK--AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT----VIERSREAMITDFTISDNS 139 (360)
T ss_dssp EEEEEEETTTCC--EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE----EEEECSSSCCCCEEECTTS
T ss_pred CEEEEEECCCCc--EEEeeCCCceEEeeeecccccccceecccccccccccccccee----eeeecccccccchhhccce
Confidence 379999998643 4567789999999999999999999999999999999765422 2234455678899999999
Q ss_pred cEEEEEe----------CCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 320 KIAATAG----------WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 320 ~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
++|+.++ .++.+++||+.+++... +..|...+..++|+|||++|++++.|+.+++|+..
T Consensus 140 ~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~ 208 (360)
T d1k32a3 140 RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 208 (360)
T ss_dssp CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred eeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEccccc
Confidence 9998654 45579999998877654 44577778899999999999999999999999864
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=8.4e-15 Score=131.20 Aligned_cols=291 Identities=12% Similarity=0.029 Sum_probs=172.2
Q ss_pred ceeeEEEeCCCCeEEEe-----cCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEe----------ccc
Q 016769 20 SVTDVCFHQTKPILFAG-----TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS----------QGR 84 (383)
Q Consensus 20 ~V~~v~f~~~~~~L~sg-----s~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s----------~~~ 84 (383)
++.-.+.+||++.++.. +.+..|.+||..+++.+..+..+. ...++++|+ ++.|+. +..
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~----~~~~a~SpD--g~~l~v~~~~~~~~~~g~~ 76 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF----LPNPVVADD--GSFIAHASTVFSRIARGER 76 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS----SCEEEECTT--SSCEEEEEEEEEETTEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC----CCceEEcCC--CCEEEEEeCCCccccccCC
Confidence 44445678999988764 456689999999887766553332 235778884 565553 345
Q ss_pred CCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecc
Q 016769 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDD 164 (383)
Q Consensus 85 D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (383)
|++|++||.++++... .+ ........ .. + .......
T Consensus 77 d~~v~v~D~~t~~~~~----~~----------~~~~~~~~---~~-----------~----------------~~~~~~~ 112 (355)
T d2bbkh_ 77 TDYVEVFDPVTLLPTA----DI----------ELPDAPRF---LV-----------G----------------TYPWMTS 112 (355)
T ss_dssp EEEEEEECTTTCCEEE----EE----------EETTCCCC---CB-----------S----------------CCGGGEE
T ss_pred CCEEEEEECCCCCEEE----EE----------ecCCccee---ec-----------C----------------CCCceEE
Confidence 8899999998874211 10 00000000 00 0 0000112
Q ss_pred cCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEE
Q 016769 165 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 244 (383)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~ 244 (383)
+++++...+++....+..+++||+.+++.+..+.... .... ... +....++.+.|++..+
T Consensus 113 ~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---~~~------~~~~~~~~~~dg~~~~ 172 (355)
T d2bbkh_ 113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----------CYHI---FPT------APDTFFMHCRDGSLAK 172 (355)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----------EEEE---EEE------ETTEEEEEETTSCEEE
T ss_pred EecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCC-----------cceE---eec------CCcceEEEcCCCCEEE
Confidence 4455655555555556789999999988766554210 0000 000 0012344556666666
Q ss_pred EeCCCCCCceee-----eeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee--------cCCCCeE
Q 016769 245 WDIRNPGIPLTA-----MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN--------LERPGIS 311 (383)
Q Consensus 245 wdl~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~--------~~~~~i~ 311 (383)
+........... ...+...+....+.+....++.++.++.+.+|++.............. .......
T Consensus 173 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 252 (355)
T d2bbkh_ 173 VAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ 252 (355)
T ss_dssp EECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred EEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceE
Confidence 654432221100 011223344456666666778889999999999876543222111100 0012234
Q ss_pred EEEECCCCcEEEEEeCC----------CcEEEEEcCCCceEEEecccccceeEEEEeCCCC--EEEEEeCCCcEEEEeCC
Q 016769 312 GTSIRPDSKIAATAGWD----------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK--LMASASEDSTVALWELY 379 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~--~las~s~d~~i~~w~~~ 379 (383)
.++++|++..++....+ ..|.+||..+++.+..+. +...+.+++|+|||+ ++++++.|+.|++||+.
T Consensus 253 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~ 331 (355)
T d2bbkh_ 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 331 (355)
T ss_dssp CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred EEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence 58899999887766544 379999999999888775 445688999999998 46778889999999985
Q ss_pred CC
Q 016769 380 PP 381 (383)
Q Consensus 380 ~~ 381 (383)
..
T Consensus 332 tg 333 (355)
T d2bbkh_ 332 SG 333 (355)
T ss_dssp TC
T ss_pred CC
Confidence 43
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=5.8e-14 Score=124.24 Aligned_cols=283 Identities=8% Similarity=0.117 Sum_probs=163.3
Q ss_pred eEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCccee-EecccCCeEEEeecCCCCCCCCCeeeeecCc
Q 016769 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (383)
Q Consensus 32 ~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~ 110 (383)
.+++++.|++|+||++.....+..+........+..++++| ++++| +++..|++|++|++....... ....
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp--DG~~L~v~~~~d~~i~~~~i~~~~~~~----~~~~-- 77 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGAL----TFAA-- 77 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCE----EEEE--
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC--CCCEEEEEECCCCeEEEEEEeCCCCcE----EEee--
Confidence 56889999999999986554333222222234567889999 46776 566679999999997653210 0000
Q ss_pred eeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCCcceEEEEecCC
Q 016769 111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQLSEVEIWDLNT 190 (383)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~ 190 (383)
.......+ .-..++++| +++++++..++.+++|+...
T Consensus 78 ----~~~~~~~p--------------------------------------~~l~~spDg-~~l~v~~~~~~~v~~~~~~~ 114 (333)
T d1ri6a_ 78 ----ESALPGSL--------------------------------------THISTDHQG-QFVFVGSYNAGNVSVTRLED 114 (333)
T ss_dssp ----EEECSSCC--------------------------------------SEEEECTTS-SEEEEEETTTTEEEEEEEET
T ss_pred ----ecccCCCc--------------------------------------eEEEEcCCC-CEEeecccCCCceeeecccc
Confidence 00000000 001234555 45667766778999999877
Q ss_pred CCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCceeee-----eccccCeE
Q 016769 191 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-----KVHLEPVL 265 (383)
Q Consensus 191 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~~~-----~~h~~~v~ 265 (383)
............. ...... .+.++ +...+.....+..|.+|+........... ........
T Consensus 115 ~~~~~~~~~~~~~--------~~~~~v---~~s~d---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~ 180 (333)
T d1ri6a_ 115 GLPVGVVDVVEGL--------DGCHSA---NISPD---NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 180 (333)
T ss_dssp TEEEEEEEEECCC--------TTBCCC---EECTT---SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEE
T ss_pred ccceecccccCCC--------ccceEE---Eeeec---ceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCcc
Confidence 6543332211000 000011 12232 12234445567789999987643322111 11233457
Q ss_pred EEEEeCCCCceEEEE-cCCcEEEEEccCCCCeeEEeeeee------cCCCCeEEEEECCCCcEEEE-EeCCCcEEEEEcC
Q 016769 266 CLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEIN------LERPGISGTSIRPDSKIAAT-AGWDRRVRIYNYR 337 (383)
Q Consensus 266 ~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~~~------~~~~~i~~~~~~p~~~~l~s-~~~dg~i~iwd~~ 337 (383)
.+.|++.+..++... ..+...+|++.............. ........+++++++++++. +..++++.+|++.
T Consensus 181 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~ 260 (333)
T d1ri6a_ 181 HMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 260 (333)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEc
Confidence 888988887765544 556678888765443322211111 12234677889999986554 4567899999997
Q ss_pred CCceEEEe---cccccceeEEEEeCCCCEEEEE-eCCCcEEEEeCC
Q 016769 338 KGSALAIL---KYHHATCNAVSFSSDCKLMASA-SEDSTVALWELY 379 (383)
Q Consensus 338 ~~~~~~~~---~~h~~~v~~v~~spd~~~las~-s~d~~i~~w~~~ 379 (383)
........ ..+...+.+++|+|||++|+++ +.++.|++|++.
T Consensus 261 ~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 261 EDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp TTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 65433222 2234567789999999987665 556899999763
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.60 E-value=2.2e-12 Score=116.03 Aligned_cols=171 Identities=11% Similarity=-0.029 Sum_probs=101.5
Q ss_pred eeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCC
Q 016769 173 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 252 (383)
Q Consensus 173 ~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~ 252 (383)
+.++...++.+.+||..+............. .......... .+.+ ...++..+.++.+.+|+......
T Consensus 179 ~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~-----~~~~~~~~~~~~v~~~~~~~~~~ 246 (373)
T d2madh_ 179 TFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT------AAQNLLTQPA-QANK-----SGRIVWPVYSGKILQADISAAGA 246 (373)
T ss_pred EEEEEcCCCeEEEEEcCCceeeEEEeeeccc------cCccceeeeE-EECC-----CceEEEecCCceEEEEEcCCCeE
Confidence 4455566789999999887755443321100 0000001111 0111 12355667788999998765421
Q ss_pred c-eeeeecccc----------CeEEEEEeCCCC----------ceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 253 P-LTAMKVHLE----------PVLCLSIDESCN----------GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 253 ~-~~~~~~h~~----------~v~~~~~~~~~~----------~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
. ......+.. ....+.+++++. .++....++.+.+||+....... .+. ....+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~----~~~-~~~~~~ 321 (373)
T d2madh_ 247 TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS----QIS-LGHDVD 321 (373)
T ss_pred EEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEE----Eec-CCCCee
Confidence 1 111111111 112233333333 23455667788999886543211 122 335688
Q ss_pred EEEECCCCc--EEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCC
Q 016769 312 GTSIRPDSK--IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSD 360 (383)
Q Consensus 312 ~~~~~p~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd 360 (383)
.++|+|||+ ++++++.|++|++||+.+++.+..+..+......+++.++
T Consensus 322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 999999998 4578899999999999999999999988888888888654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=4.3e-13 Score=119.80 Aligned_cols=125 Identities=12% Similarity=0.078 Sum_probs=82.0
Q ss_pred EEEEEeCCCcEEEEeCCCCCCc-eeeeeccc----------cCeEEEEEeCCCCceEEEEcC----------CcEEEEEc
Q 016769 232 NVLAGYEDGSILVWDIRNPGIP-LTAMKVHL----------EPVLCLSIDESCNGGISGGAD----------QKIVLYNL 290 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~-~~~~~~h~----------~~v~~~~~~~~~~~~~s~~~d----------~~i~~wdl 290 (383)
.++.++.++.+.+|++...... +.....+. .....+.+++++..++....+ +.|.+||+
T Consensus 208 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~ 287 (355)
T d2bbkh_ 208 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA 287 (355)
T ss_dssp EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeC
Confidence 4667888999999998764321 11111111 122346667776665443322 46889998
Q ss_pred cCCCCeeEEeeeeecCCCCeEEEEECCCCc--EEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCC
Q 016769 291 DHSTGSCVIKKEINLERPGISGTSIRPDSK--IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDC 361 (383)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~ 361 (383)
..... ... +.. ...+.+++|+|||+ ++++++.|++|++||+.+++.+.++.++......|.+.++|
T Consensus 288 ~t~~~--~~~--~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 288 KTGER--LAK--FEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp TTCCE--EEE--EEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred CCCcE--EEE--ecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence 75432 211 111 23478899999997 46777889999999999999999998777666666665543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=3.8e-12 Score=112.23 Aligned_cols=263 Identities=10% Similarity=0.099 Sum_probs=147.6
Q ss_pred eecCCceeeEEEeCCCCeEE-EecCCCeEEEeeCccccccccccccc-ccceeeeeeecCCCCcceeEecc-cCCeEEEe
Q 016769 15 RGHRASVTDVCFHQTKPILF-AGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQG-RDGTVKCW 91 (383)
Q Consensus 15 ~gH~~~V~~v~f~~~~~~L~-sgs~D~~v~vW~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~-~D~ti~~W 91 (383)
..|.+.|..|+|+|||++|+ ++..|+.|++|++...........+. .......+++++ ++++|++++ .++++++|
T Consensus 33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp--Dg~~l~v~~~~~~~v~~~ 110 (333)
T d1ri6a_ 33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH--QGQFVFVGSYNAGNVSVT 110 (333)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT--TSSEEEEEETTTTEEEEE
T ss_pred EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC--CCCEEeecccCCCceeee
Confidence 37889999999999999885 55568999999987554333222221 122345678888 467776665 67899999
Q ss_pred ecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCc
Q 016769 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPK 171 (383)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (383)
+.+...... ......... . .....++++++
T Consensus 111 ~~~~~~~~~--------------~~~~~~~~~----------~-------------------------~~~v~~s~d~~- 140 (333)
T d1ri6a_ 111 RLEDGLPVG--------------VVDVVEGLD----------G-------------------------CHSANISPDNR- 140 (333)
T ss_dssp EEETTEEEE--------------EEEEECCCT----------T-------------------------BCCCEECTTSS-
T ss_pred cccccccee--------------cccccCCCc----------c-------------------------ceEEEeeecce-
Confidence 986542100 000000000 0 00011234443
Q ss_pred eeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCC
Q 016769 172 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 251 (383)
Q Consensus 172 ~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~ 251 (383)
++++.......+.+|+..+................. .....+ .+.+. +.....+....+...+|++....
T Consensus 141 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g----~~p~~i---~~~~~---~~~~~~~~~~~~~~~v~~~~~~~ 210 (333)
T d1ri6a_ 141 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG----AGPRHM---VFHPN---EQYAYCVNELNSSVDVWELKDPH 210 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT----CCEEEE---EECTT---SSEEEEEETTTTEEEEEESSCTT
T ss_pred eeeccccccceeeEEEeccCCcceeeeceeeeeecC----CCccEE---EEecc---ceeEEeeccccCceEEEeecccc
Confidence 455555566789999987755432221110000000 000111 12222 12234556667778888865433
Q ss_pred Cceee---ee------ccccCeEEEEEeCCCCceEE-EEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcE
Q 016769 252 IPLTA---MK------VHLEPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 321 (383)
Q Consensus 252 ~~~~~---~~------~h~~~v~~~~~~~~~~~~~s-~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 321 (383)
..... .. ........+.++++++.++. +..++.+.+|+++..+......... .....+.+++|+|||++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~a~spDGk~ 289 (333)
T d1ri6a_ 211 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ-PTETQPRGFNVDHSGKY 289 (333)
T ss_dssp SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE-ECSSSCCCEEECTTSSE
T ss_pred cceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe-CCCCCeeEEEEeCCCCE
Confidence 22211 10 11234556778888876654 4557789999998665443332222 23345778999999998
Q ss_pred EEEEe-CCCcEEEEEc--CCCc
Q 016769 322 AATAG-WDRRVRIYNY--RKGS 340 (383)
Q Consensus 322 l~s~~-~dg~i~iwd~--~~~~ 340 (383)
|++++ .+++|++|++ .+|+
T Consensus 290 l~va~~~~~~v~v~~id~~tG~ 311 (333)
T d1ri6a_ 290 LIAAGQKSHHISVYEIVGEQGL 311 (333)
T ss_dssp EEEECTTTCEEEEEEEETTTTE
T ss_pred EEEEECCCCeEEEEEEECCCCc
Confidence 77765 4689999965 5554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.40 E-value=2.1e-11 Score=109.67 Aligned_cols=291 Identities=11% Similarity=-0.015 Sum_probs=163.2
Q ss_pred ecCCceeeEEEeCCCCe---EEEecCCCe--EEEeeCcccccccccccccccceeeeeeecCCCCcceeEe---------
Q 016769 16 GHRASVTDVCFHQTKPI---LFAGTTGGE--LRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS--------- 81 (383)
Q Consensus 16 gH~~~V~~v~f~~~~~~---L~sgs~D~~--v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--------- 81 (383)
.+.++...++..++++. .++...++. +.+||..+++.+.....+.. ..+.++++ ++.++.
T Consensus 17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~----~~~a~spD--g~~i~~~~~~~~~~~ 90 (368)
T d1mdah_ 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL----SLAVAGHS--GSDFALASTSFARSA 90 (368)
T ss_dssp CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT----CEEEECTT--SSCEEEEEEEETTTT
T ss_pred ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC----CcceECCC--CCEEEEEcccCcccc
Confidence 45566677788888874 334555555 55668887776655433322 23566663 454442
Q ss_pred -cccCCeEEEeecCCCCCCCCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccc
Q 016769 82 -QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFE 160 (383)
Q Consensus 82 -~~~D~ti~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
++.|++|++||..+++... .+ .+ +...... .+ ...
T Consensus 91 ~g~~d~~v~v~D~~t~~~~~----~i----------~~---p~~~~~~-----------~g----------------~~p 126 (368)
T d1mdah_ 91 KGKRTDYVEVFDPVTFLPIA----DI----------EL---PDAPRFS-----------VG----------------PRV 126 (368)
T ss_dssp SSSEEEEEEEECTTTCCEEE----EE----------EE---TTSCSCC-----------BS----------------CCT
T ss_pred ccccCCeEEEEECCCCcEee----ee----------cC---Cccceec-----------cc----------------CCc
Confidence 4568999999998764211 00 00 0000000 00 000
Q ss_pred eecccCCCCCceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCC
Q 016769 161 IIDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 240 (383)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg 240 (383)
....++++|+. ++++...++.+.+||+.+++.+..+...... . + .+. +...+++.+.||
T Consensus 127 ~~~a~SpDGk~-l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~---~-----------~---~~~---~~~~~v~~~~Dg 185 (368)
T d1mdah_ 127 HIIGNCASSAC-LLFFLFGSSAAAGLSVPGASDDQLTKSASCF---H-----------I---HPG---AAATHYLGSCPA 185 (368)
T ss_dssp TSEEECTTSSC-EEEEECSSSCEEEEEETTTEEEEEEECSSCC---C-----------C---EEE---ETTEEECCCCTT
T ss_pred cceEECCCCCE-EEEEeCCCCeEEEEECCCCcEeEEeeccCcc---e-----------E---ccC---CCceEEEEcCCC
Confidence 11235567754 4555556789999999998876665422100 0 0 000 011355677899
Q ss_pred cEEEEeCCCCCCceee-----eeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeee--------cCC
Q 016769 241 SILVWDIRNPGIPLTA-----MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN--------LER 307 (383)
Q Consensus 241 ~i~~wdl~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~--------~~~ 307 (383)
++.+|++......... ...+...+....+++.+. +....++.+.++++.............. ...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T d1mdah_ 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM--LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRS 263 (368)
T ss_dssp SCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE--EEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred CEEEEEecCCceeeeeeecccccccccceeecccccCcE--EEEecCCCEEEEeecCCceEEEeecccccceeeeeeecC
Confidence 9999987654332111 111222333445555543 3334456666666654332221110000 001
Q ss_pred CCeEEEEECCCCcEEEEEeCC---------CcEEEEEcCCCceEEEecccccceeEEEEeCCCC--EEEEEeCCCcEEEE
Q 016769 308 PGISGTSIRPDSKIAATAGWD---------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK--LMASASEDSTVALW 376 (383)
Q Consensus 308 ~~i~~~~~~p~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~--~las~s~d~~i~~w 376 (383)
.+...++++|++..+.....+ .+|.+||..+++.+..+. +...+.+++|+|||+ ++++++.|+.|++|
T Consensus 264 ~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~ 342 (368)
T d1mdah_ 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIY 342 (368)
T ss_dssp CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred CCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEE
Confidence 123457888888765444322 359999999999888775 456789999999997 45788889999999
Q ss_pred eCCC
Q 016769 377 ELYP 380 (383)
Q Consensus 377 ~~~~ 380 (383)
|...
T Consensus 343 D~~t 346 (368)
T d1mdah_ 343 DAAS 346 (368)
T ss_dssp ESSS
T ss_pred ECCC
Confidence 9753
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.13 E-value=2.7e-09 Score=95.58 Aligned_cols=84 Identities=6% Similarity=-0.022 Sum_probs=56.5
Q ss_pred CeeeeeecCCceeeEEEeCCCCeEEEe----------cCCCeEEEeeCcccccccccccccc-----cceeeeeeecCCC
Q 016769 10 PVAVLRGHRASVTDVCFHQTKPILFAG----------TTGGELRIWDTVQHRTVSSSWVHSA-----AHGIVSVATGPSI 74 (383)
Q Consensus 10 ~~~~l~gH~~~V~~v~f~~~~~~L~sg----------s~D~~v~vW~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 74 (383)
++.++.+|... .++|+|||+.|+.. +.|+.|++||..+++.+..+..+.. ......+++++
T Consensus 58 ~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-- 133 (368)
T d1mdah_ 58 TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-- 133 (368)
T ss_dssp EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT--
T ss_pred EEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC--
Confidence 34455555554 47899999988864 4588899999988776554432211 01123467887
Q ss_pred CcceeEec-ccCCeEEEeecCCCC
Q 016769 75 GLNKVISQ-GRDGTVKCWDIENGG 97 (383)
Q Consensus 75 ~~~~l~s~-~~D~ti~~Wd~~~~~ 97 (383)
++++++.+ ..++++.+||+++++
T Consensus 134 DGk~l~va~~~~~~v~~~d~~~~~ 157 (368)
T d1mdah_ 134 SSACLLFFLFGSSAAAGLSVPGAS 157 (368)
T ss_dssp TSSCEEEEECSSSCEEEEEETTTE
T ss_pred CCCEEEEEeCCCCeEEEEECCCCc
Confidence 46666654 578999999998764
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.99 E-value=3.3e-09 Score=98.26 Aligned_cols=79 Identities=10% Similarity=0.028 Sum_probs=58.6
Q ss_pred eeeecCCceeeEEEeCCCCeEEEecC---------CCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecc
Q 016769 13 VLRGHRASVTDVCFHQTKPILFAGTT---------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (383)
Q Consensus 13 ~l~gH~~~V~~v~f~~~~~~L~sgs~---------D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (383)
+|.+|...|.++.|||||++|+.++. ++.+.|||+.+++.. .+..+ ...+..+.|+| ++.+++..
T Consensus 56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l~~~--~~~~~~~~~SP--DG~~ia~~- 129 (470)
T d2bgra1 56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERI--PNNTQWVTWSP--VGHKLAYV- 129 (470)
T ss_dssp TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCC--CTTEEEEEECS--STTCEEEE-
T ss_pred hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-ccccC--Ccccccccccc--CcceeeEe-
Confidence 44566789999999999999998754 567889999876543 33222 23567788998 46777764
Q ss_pred cCCeEEEeecCCCC
Q 016769 84 RDGTVKCWDIENGG 97 (383)
Q Consensus 84 ~D~ti~~Wd~~~~~ 97 (383)
.++.+.+|+..++.
T Consensus 130 ~~~~l~~~~~~~g~ 143 (470)
T d2bgra1 130 WNNDIYVKIEPNLP 143 (470)
T ss_dssp ETTEEEEESSTTSC
T ss_pred ecccceEEECCCCc
Confidence 56789999988775
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.87 E-value=4.9e-08 Score=88.25 Aligned_cols=131 Identities=18% Similarity=0.066 Sum_probs=86.0
Q ss_pred CCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceE-EEEcCCcEEEEEccCCCC----e----eEEeeeeecCCC
Q 016769 238 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTG----S----CVIKKEINLERP 308 (383)
Q Consensus 238 ~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~i~~wdl~~~~~----~----~~~~~~~~~~~~ 308 (383)
.++.+.+++... ...+..+..+..| ..+.++|++++++ ++..++++.+||++.... . ..+..+... .-
T Consensus 236 ~~~v~vvd~~~~-~~v~~~IPvgksP-hGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~-gl 312 (441)
T d1qnia2 236 DSKVPVVDGRGE-SEFTRYIPVPKNP-HGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPEL-GL 312 (441)
T ss_dssp TCCCCEEECSSS-CSSEEEECCBSSC-CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBC-CS
T ss_pred CCCcEEEEcccC-CceEEEEeCCCCc-cCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccc-cc
Confidence 356666666544 2334555555443 5788999999865 556799999999853110 0 000111111 11
Q ss_pred CeEEEEECCCCcEEEEEeCCCcEEEEEcCC---------Cc-eEEEe-----cccccceeEEEEeCCCCEEEEE---eCC
Q 016769 309 GISGTSIRPDSKIAATAGWDRRVRIYNYRK---------GS-ALAIL-----KYHHATCNAVSFSSDCKLMASA---SED 370 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~---------~~-~~~~~-----~~h~~~v~~v~~spd~~~las~---s~d 370 (383)
+....+|.++|..+.+...|..|..|++.. .. .+..+ .+|...+.+.+|+|||++|+++ |.|
T Consensus 313 gplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~d 392 (441)
T d1qnia2 313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKD 392 (441)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGG
T ss_pred CcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccc
Confidence 345568999999899999999999999842 11 22222 4788888888899999999999 555
Q ss_pred C
Q 016769 371 S 371 (383)
Q Consensus 371 ~ 371 (383)
+
T Consensus 393 r 393 (441)
T d1qnia2 393 R 393 (441)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.76 E-value=1e-08 Score=94.93 Aligned_cols=135 Identities=14% Similarity=0.081 Sum_probs=96.5
Q ss_pred eCCCcEEEEeCCCCCCcee-----eeeccccCeEEEEEeCCCCceEEEEc---------CCcEEEEEccCCCCeeEEeee
Q 016769 237 YEDGSILVWDIRNPGIPLT-----AMKVHLEPVLCLSIDESCNGGISGGA---------DQKIVLYNLDHSTGSCVIKKE 302 (383)
Q Consensus 237 ~~dg~i~~wdl~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~s~~~---------d~~i~~wdl~~~~~~~~~~~~ 302 (383)
..|+.|.+||+.++.. .. .+..|...|.++.|+|+++.++.++. ++.+.+||+..... ..
T Consensus 33 ~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-----~~ 106 (470)
T d2bgra1 33 KQENNILVFNAEYGNS-SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-----IT 106 (470)
T ss_dssp ESSSCEEEEETTTCCE-EEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-----CC
T ss_pred EcCCcEEEEECCCCCE-EEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-----cc
Confidence 3578899999987543 22 23345578999999999998877643 46678999975431 22
Q ss_pred eecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEeccc------------------ccceeEEEEeCCCCEE
Q 016769 303 INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH------------------HATCNAVSFSSDCKLM 364 (383)
Q Consensus 303 ~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h------------------~~~v~~v~~spd~~~l 364 (383)
+..+...+..+.|+|||+++|.. .++.+++|+...++.......+ ......+.|||||++|
T Consensus 107 l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~i 185 (470)
T d2bgra1 107 EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL 185 (470)
T ss_dssp SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEE
T ss_pred cccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCcc
Confidence 34455678899999999998875 5789999999888765433221 1233557899999999
Q ss_pred EEEeCCCc-EEEEeC
Q 016769 365 ASASEDST-VALWEL 378 (383)
Q Consensus 365 as~s~d~~-i~~w~~ 378 (383)
|+...|.. |+.|.+
T Consensus 186 a~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 186 AYAQFNDTEVPLIEY 200 (470)
T ss_dssp EEEEEECTTCCEEEE
T ss_pred ceeEecCCcCceEEE
Confidence 99887655 655543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.57 E-value=2e-06 Score=77.50 Aligned_cols=199 Identities=10% Similarity=0.090 Sum_probs=115.0
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCC--CcCC-------------CCCce--eeEEEeecCCCCCCceEE
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP--NFSS-------------KGRGM--CMAVQAYLPSKSQGFVNV 233 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~--~~~~-------------~~~~~--~~~~~~~~~~~~~~~~~~ 233 (383)
.|.+++|++.|.|++||+.+++.+.++.--...... .++. .+... ..+.....|+ +...+
T Consensus 11 ~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpD---Gr~lf 87 (441)
T d1qnia2 11 YYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYD---GKYLF 87 (441)
T ss_dssp EEEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEE---EEEEE
T ss_pred EEEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCC---CCEEE
Confidence 467889999999999999999988877420000000 0000 00000 0111111121 22233
Q ss_pred EEEeCCCcEEEEeCCCCCCceeeeec-cccCeEEEEEeCCCCce-EEEEcCCcE------------------EEEEccCC
Q 016769 234 LAGYEDGSILVWDIRNPGIPLTAMKV-HLEPVLCLSIDESCNGG-ISGGADQKI------------------VLYNLDHS 293 (383)
Q Consensus 234 ~sg~~dg~i~~wdl~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~-~s~~~d~~i------------------~~wdl~~~ 293 (383)
+....+++|.++|+++... ...+.. +......+.|+++++.. +.+..+..+ ..+|....
T Consensus 88 V~d~~~~rVavIDl~t~k~-~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~ 166 (441)
T d1qnia2 88 INDKANTRVARIRLDIMKT-DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM 166 (441)
T ss_dssp EEETTTTEEEEEETTTTEE-EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred EEcCCCCEEEEEECCCCcE-eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc
Confidence 5667889999999987432 233332 34567788898877753 333333333 22443322
Q ss_pred CCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCC-----------------------------------------CcEE
Q 016769 294 TGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD-----------------------------------------RRVR 332 (383)
Q Consensus 294 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~d-----------------------------------------g~i~ 332 (383)
.... .... ......++|+|+|+++++++.+ +.+.
T Consensus 167 --~v~~--qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~v 241 (441)
T d1qnia2 167 --DVAW--QVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPV 241 (441)
T ss_dssp --SEEE--EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred --eeeE--EEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEE
Confidence 2211 1111 2346789999999998888754 3344
Q ss_pred EEEcCCCceEEEecccccceeEEEEeCCCCEE-EEEeCCCcEEEEeCC
Q 016769 333 IYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASEDSTVALWELY 379 (383)
Q Consensus 333 iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~l-as~s~d~~i~~w~~~ 379 (383)
+++....+.+..+.-... ...++++|||+++ +++..|++|.+||+.
T Consensus 242 vd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 242 VDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp EECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred EEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence 444444455555544433 4678999999964 778999999999973
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.55 E-value=0.00011 Score=62.12 Aligned_cols=114 Identities=17% Similarity=0.208 Sum_probs=76.9
Q ss_pred ccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC-CCcEEEEEcCCC
Q 016769 261 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW-DRRVRIYNYRKG 339 (383)
Q Consensus 261 ~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~-dg~i~iwd~~~~ 339 (383)
......+++++++..+++....+.|.+||.+. ..+.............++++.|+|+.+++-.. +++|.+|+. ++
T Consensus 156 ~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G---~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G 231 (279)
T d1q7fa_ 156 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG---QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DG 231 (279)
T ss_dssp CSSEEEEEECSSSEEEEEEGGGTEEEEEETTC---CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TS
T ss_pred ccccceeeeccceeEEeeeccccceeeeecCC---ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CC
Confidence 34455677777776556666677888887642 22222111122345788999999998776554 457999985 58
Q ss_pred ceEEEecc--cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 016769 340 SALAILKY--HHATCNAVSFSSDCKLMASASEDSTVALWELY 379 (383)
Q Consensus 340 ~~~~~~~~--h~~~v~~v~~spd~~~las~s~d~~i~~w~~~ 379 (383)
+.+.++.. .......|++.|||++++ ++.+..|++|..-
T Consensus 232 ~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 232 QLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYV 272 (279)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECS
T ss_pred CEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEee
Confidence 77766643 234578999999997655 5679999999874
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.53 E-value=8.4e-05 Score=65.55 Aligned_cols=147 Identities=13% Similarity=0.062 Sum_probs=88.4
Q ss_pred EEEeCCCcEEEEeCCCCCCce--eeee--ccccCeEEEEEeCCCCceEE-EEcCCcEEEEEccCCCCeeEEee-eeec--
Q 016769 234 LAGYEDGSILVWDIRNPGIPL--TAMK--VHLEPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKK-EINL-- 305 (383)
Q Consensus 234 ~sg~~dg~i~~wdl~~~~~~~--~~~~--~h~~~v~~~~~~~~~~~~~s-~~~d~~i~~wdl~~~~~~~~~~~-~~~~-- 305 (383)
+.......|.+|++...+... .... ......+.+.|++++..++. .-.+++|.+|+++.......... ....
T Consensus 161 v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~ 240 (365)
T d1jofa_ 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred EeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccc
Confidence 334445678888765443211 1111 12345678999999987644 45688899999976543322211 1100
Q ss_pred ------------CCCCeEEEEECCCCcEEEEEeC------CCcEEEEEcCCCceEEE---e---cccccceeEEEEeC-C
Q 016769 306 ------------ERPGISGTSIRPDSKIAATAGW------DRRVRIYNYRKGSALAI---L---KYHHATCNAVSFSS-D 360 (383)
Q Consensus 306 ------------~~~~i~~~~~~p~~~~l~s~~~------dg~i~iwd~~~~~~~~~---~---~~h~~~v~~v~~sp-d 360 (383)
.......+.++|||++++++.. .+.|..|++.....+.. + .........++|+| +
T Consensus 241 ~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~ 320 (365)
T d1jofa_ 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred ccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCC
Confidence 0112457889999999877642 22488888865332221 1 11223456789998 8
Q ss_pred CCEEE-EEeCCCcEEEEeCCC
Q 016769 361 CKLMA-SASEDSTVALWELYP 380 (383)
Q Consensus 361 ~~~la-s~s~d~~i~~w~~~~ 380 (383)
|++|+ +...++.|.+|++.+
T Consensus 321 G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 321 DEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEET
T ss_pred CCEEEEEeCCCCeEEEEEEeC
Confidence 89664 556789999998754
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.43 E-value=0.00012 Score=62.70 Aligned_cols=242 Identities=12% Similarity=0.015 Sum_probs=124.8
Q ss_pred ceeeEEEeCCCCeEEEecCCCeEEEeeCcccccccccccccccceeeeeeecCCCCcceeEecccCCeEEEeecCCCCCC
Q 016769 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (383)
Q Consensus 20 ~V~~v~f~~~~~~L~sgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ti~~Wd~~~~~~~ 99 (383)
.+..++++|||++++|...+++|..|+....... + ........++++.+ +++.+++...++.+..|+.......
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~--~--~~~~~~~~gla~~~--dG~l~v~~~~~~~~~~~~~~~~~~~ 102 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI--H--ATVEGKVSGLAFTS--NGDLVATGWNADSIPVVSLVKSDGT 102 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE--E--EECSSEEEEEEECT--TSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEE--E--EcCCCCcceEEEcC--CCCeEEEecCCceEEEEEecccccc
Confidence 4778999999999999999999999986543222 1 11223566788887 4677777777788888876543210
Q ss_pred CCCeeeeecCceeeeeEEeeccccccccccCCCCccceeccCcccccCccccccccCCccceecccCCCCCceeeeccCC
Q 016769 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKESNRSFEIIDDVPAEGPKYMAVAGEQ 179 (383)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 179 (383)
...+ ...+.. . ...-..+.+++ ++ .++.+.
T Consensus 103 ---~~~~------------~~~~~~--------~-------------------------~~n~i~~~~~g-~~-~v~~~~ 132 (302)
T d2p4oa1 103 ---VETL------------LTLPDA--------I-------------------------FLNGITPLSDT-QY-LTADSY 132 (302)
T ss_dssp ---EEEE------------EECTTC--------S-------------------------CEEEEEESSSS-EE-EEEETT
T ss_pred ---eeec------------cccCCc--------c-------------------------ccceeEEccCC-CE-Eeeccc
Confidence 0000 000000 0 00000111222 22 233344
Q ss_pred cceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCCCCcee-eee
Q 016769 180 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-AMK 258 (383)
Q Consensus 180 ~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~~~~~~-~~~ 258 (383)
.+.+..+|...+.....+............. ......+ ..+ +....++.+..+.|..+++........ ..-
T Consensus 133 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ngi---~~~---~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 204 (302)
T d2p4oa1 133 RGAIWLIDVVQPSGSIWLEHPMLARSNSESV--FPAANGL---KRF---GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF 204 (302)
T ss_dssp TTEEEEEETTTTEEEEEEECGGGSCSSTTCC--SCSEEEE---EEE---TTEEEEEETTTTEEEEEEBCTTSCBCCCEEE
T ss_pred cccceeeeccCCcceeEecCCccceeeccCc--ccccccc---ccc---CCceeeecCCCCeEEeccccccccccccccc
Confidence 4566666666554222111110000000000 0000111 111 122456678888888888765432111 111
Q ss_pred ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEE---CCCCcEEEEEeCC
Q 016769 259 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI---RPDSKIAATAGWD 328 (383)
Q Consensus 259 ~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~---~p~~~~l~s~~~d 328 (383)
.+......+++++++...++...++.|..++.+. ...............++++| ++|++.|..++..
T Consensus 205 ~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G---~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 205 VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR---STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC---CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC---CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 1223345789999987666666788888886542 22111222223346789999 6788877666544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.43 E-value=0.00034 Score=60.15 Aligned_cols=114 Identities=13% Similarity=0.202 Sum_probs=77.3
Q ss_pred EEEEEeCCCC----ceEE-EEcCCcEEEEEccCCCCeeEEee---eee-cCCCCeEEEEECCCCcEEEEEeCCCcEEEEE
Q 016769 265 LCLSIDESCN----GGIS-GGADQKIVLYNLDHSTGSCVIKK---EIN-LERPGISGTSIRPDSKIAATAGWDRRVRIYN 335 (383)
Q Consensus 265 ~~~~~~~~~~----~~~s-~~~d~~i~~wdl~~~~~~~~~~~---~~~-~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd 335 (383)
+.+.++++.+ .++. -+..+.|..||++... ...-.. ... .......++++.++|+..++....+.|.+||
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g-~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d 253 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA-KIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG 253 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT-EEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred eeeEECCCCCcceeEEEEEeecccceEEeeccCcc-ccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence 4566655443 3433 3456778888876432 211111 111 1122456899999999888888889999999
Q ss_pred cCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 336 YRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 336 ~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
.+.++....+......+.+++|.||++ ++++.+.++.|...++.
T Consensus 254 p~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 254 PDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 988776666665566788999999998 66888888988887764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.27 E-value=0.00039 Score=57.89 Aligned_cols=114 Identities=13% Similarity=0.057 Sum_probs=76.7
Q ss_pred EEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEE
Q 016769 265 LCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI 344 (383)
Q Consensus 265 ~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~ 344 (383)
..+.+++++..+++...++.|..+|.+... ... ..........++++.++++++++-...++|..++.........
T Consensus 143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~-~~~---~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~ 218 (260)
T d1rwia_ 143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNN-QVV---LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL 218 (260)
T ss_dssp CEEEECTTCCEEEEEGGGTEEEEECTTTCC-EEE---CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEEC
T ss_pred ceeeecCCCCEeeeccccccccccccccce-eee---eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEE
Confidence 467777777655666667778888765322 111 1112234578899999999888887888898888754432222
Q ss_pred ecccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCCCC
Q 016769 345 LKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 382 (383)
Q Consensus 345 ~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~~~ 382 (383)
....-.....++++++|.++++-..++.|+.++-..+|
T Consensus 219 ~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~~~ 256 (260)
T d1rwia_ 219 PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 256 (260)
T ss_dssp CCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCCCc
Confidence 22233457899999999998888888888877765443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.02 E-value=0.0008 Score=56.52 Aligned_cols=137 Identities=11% Similarity=0.164 Sum_probs=89.5
Q ss_pred EeCCCcEEEEeCCCCCCceeeee-ccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEE
Q 016769 236 GYEDGSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 314 (383)
Q Consensus 236 g~~dg~i~~wdl~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~ 314 (383)
.+.++.|..++.. +.....+. ........+++++.+...++....+.+.+++-+ +..........+......++
T Consensus 89 ~~~~~~i~~~~~~--g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~i~ 163 (279)
T d1q7fa_ 89 RSPTHQIQIYNQY--GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN---GNVLHKFGCSKHLEFPNGVV 163 (279)
T ss_dssp CGGGCEEEEECTT--SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT---SCEEEEEECTTTCSSEEEEE
T ss_pred cCCcccccccccc--ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC---Cceeecccccccccccceee
Confidence 4556677777753 22233332 233455678888887765655555667666543 22222211223345678899
Q ss_pred ECCCCcEEEEEeCCCcEEEEEcCCCceEEEec--ccccceeEEEEeCCCCEEEEEeC-CCcEEEEeC
Q 016769 315 IRPDSKIAATAGWDRRVRIYNYRKGSALAILK--YHHATCNAVSFSSDCKLMASASE-DSTVALWEL 378 (383)
Q Consensus 315 ~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~spd~~~las~s~-d~~i~~w~~ 378 (383)
+.++++.+++....++|++||. +++.+..+. ++......|++.|+|+++++-+. ++.|.+|+.
T Consensus 164 ~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~ 229 (279)
T d1q7fa_ 164 VNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 229 (279)
T ss_dssp ECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred eccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence 9999999998889999999997 466666663 34556788999999998877554 456888863
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.73 E-value=0.0017 Score=53.73 Aligned_cols=140 Identities=8% Similarity=0.043 Sum_probs=88.3
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEE
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 312 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~ 312 (383)
.++....+.+++++-.+ ....... ........++++++++..++-.....+..++....... . .. ........+
T Consensus 71 ~v~d~~~~~i~~~~~~~-~~~~~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~--~-~~-~~~~~~p~~ 144 (260)
T d1rwia_ 71 YVTDFNNRVVTLAAGSN-NQTVLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT--V-LP-FTGLNDPDG 144 (260)
T ss_dssp EEEETTTEEEEECTTCS-CCEECCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE--E-CC-CCSCCSCCE
T ss_pred EEeeeeeceeeeeeecc-ceeeeee-eeeeecccccccccceeEeeccccccccccccccceee--e-ee-ecccCCcce
Confidence 44555555566555333 2211111 12245678889888765554444555666654432211 1 11 111234678
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 313 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 313 ~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
+++.|+++.+++...+++|..+|.+.................+++.++|+++++-...+.|..++.
T Consensus 145 i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~ 210 (260)
T d1rwia_ 145 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 210 (260)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred eeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeC
Confidence 999999999888888999999998765544333345566788999999999999988888887765
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=0.0085 Score=49.13 Aligned_cols=93 Identities=9% Similarity=-0.019 Sum_probs=57.4
Q ss_pred cCeEEEEEeCCCCceEEEEc-CCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC---CCcEEEEEcC
Q 016769 262 EPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW---DRRVRIYNYR 337 (383)
Q Consensus 262 ~~v~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~---dg~i~iwd~~ 337 (383)
.......+++++..++..+. .+...+|..+........ ...........|+|||+.|+-.+. ...|++++++
T Consensus 171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d 246 (269)
T d2hqsa1 171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV----LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 246 (269)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE----CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred ccccccccccccceeEEEeecCCceeeeEeecccccceE----eecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 34445567777776655443 444555555444333221 122344567789999998775443 4478889997
Q ss_pred CCceEEEecccccceeEEEEeC
Q 016769 338 KGSALAILKYHHATCNAVSFSS 359 (383)
Q Consensus 338 ~~~~~~~~~~h~~~v~~v~~sp 359 (383)
.+.. ..+......+...+|||
T Consensus 247 g~~~-~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 247 GRFK-ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp SCCE-EECCCSSSEEEEEEECC
T ss_pred CCCE-EEEeCCCCcEEeEEeCC
Confidence 6654 44555666788889998
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.70 E-value=0.0056 Score=53.36 Aligned_cols=116 Identities=10% Similarity=-0.010 Sum_probs=74.3
Q ss_pred eEEEEEeCCCCceEEEEc-CCcEEEEEccCCCCeeEEeee-eecCCCCeEEEEECCCCcEEEEEe-CCCcEEEEEcCCCc
Q 016769 264 VLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKE-INLERPGISGTSIRPDSKIAATAG-WDRRVRIYNYRKGS 340 (383)
Q Consensus 264 v~~~~~~~~~~~~~s~~~-d~~i~~wdl~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~ 340 (383)
+.++.|+|+++.+++++. ...|.+|+++........... ......+...++|+|+++++.... .+++|.+|+++.++
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~ 226 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence 568999999998877754 456888887643322222111 122345789999999999775544 68999999997654
Q ss_pred eE--EEec-----------------ccccceeEEEEeCCCCEEEEEeC-CC-----cEEEEeCC
Q 016769 341 AL--AILK-----------------YHHATCNAVSFSSDCKLMASASE-DS-----TVALWELY 379 (383)
Q Consensus 341 ~~--~~~~-----------------~h~~~v~~v~~spd~~~las~s~-d~-----~i~~w~~~ 379 (383)
.. .... .+......+.++|||++|.++.+ +. .|..|++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~ 290 (365)
T d1jofa_ 227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEec
Confidence 32 1111 11223567889999998776643 22 26666654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.48 E-value=0.0063 Score=51.36 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=95.6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeE
Q 016769 232 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 311 (383)
Q Consensus 232 ~~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~ 311 (383)
.+++...+++|..||.... ...+......+.+++++++++.+++...++.+..+++............ .......+
T Consensus 41 l~vt~~~~~~I~~i~p~g~---~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~n 116 (302)
T d2p4oa1 41 IFVTNHEVGEIVSITPDGN---QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT-LPDAIFLN 116 (302)
T ss_dssp EEEEETTTTEEEEECTTCC---EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE-CTTCSCEE
T ss_pred EEEEeCCCCEEEEEeCCCC---EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccc-cCCccccc
Confidence 4667777888888875432 2333334456789999999987777777888888887655443322211 22345688
Q ss_pred EEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEec----------ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 016769 312 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK----------YHHATCNAVSFSSDCKLMASASEDSTVALWELYP 380 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------~h~~~v~~v~~spd~~~las~s~d~~i~~w~~~~ 380 (383)
.+++.++++++++.+.++.+..+|...+....... ......+.+.+.. +.++++.+.++.|..+++..
T Consensus 117 ~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~ 194 (302)
T d2p4oa1 117 GITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDS 194 (302)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCT
T ss_pred eeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccc
Confidence 99999999999998899999999987765332111 1112345566653 34667778888888777643
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=0.017 Score=47.25 Aligned_cols=107 Identities=11% Similarity=0.110 Sum_probs=58.9
Q ss_pred EEeCCCCce-EEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeCCC-cEEEE--EcCCCceEE
Q 016769 268 SIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR-RVRIY--NYRKGSALA 343 (383)
Q Consensus 268 ~~~~~~~~~-~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg-~i~iw--d~~~~~~~~ 343 (383)
.+....... ++...++...+|..+....... .............++|+++.++..+.++ ...+| |...+..
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-- 207 (269)
T d2hqsa1 133 TWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ---RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-- 207 (269)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTSSCCE---ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--
T ss_pred ccccccccceecccccCCceEeeeecccccce---eeecccccccccccccccceeEEEeecCCceeeeEeecccccc--
Confidence 344444433 3444455544444333222211 1222334566778999999877766544 44444 4444433
Q ss_pred EecccccceeEEEEeCCCCEEEEEeCC---CcEEEEeCC
Q 016769 344 ILKYHHATCNAVSFSSDCKLMASASED---STVALWELY 379 (383)
Q Consensus 344 ~~~~h~~~v~~v~~spd~~~las~s~d---~~i~~w~~~ 379 (383)
.+..+........|||||++|+..+.. ..+.++++.
T Consensus 208 ~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d 246 (269)
T d2hqsa1 208 QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 246 (269)
T ss_dssp EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 333455556778899999988765543 356677763
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.28 E-value=0.04 Score=46.60 Aligned_cols=106 Identities=10% Similarity=0.046 Sum_probs=72.3
Q ss_pred CeEEEEEeCCCCceEE-EEcCCcEEEEEccCCCCeeEEe-ee-e--ecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcC
Q 016769 263 PVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIK-KE-I--NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 337 (383)
Q Consensus 263 ~v~~~~~~~~~~~~~s-~~~d~~i~~wdl~~~~~~~~~~-~~-~--~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~ 337 (383)
..+.++|+++++.++. -+..+.|..|+++......... .. . ........++++.++|++.++....++|.+||.
T Consensus 178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p- 256 (319)
T d2dg1a1 178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK- 256 (319)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-
T ss_pred eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-
Confidence 3467889998886644 4567889999987543221111 11 1 111234678999999998888888999999995
Q ss_pred CCceEEEec------ccccceeEEEEeCCCCEEEEEeC
Q 016769 338 KGSALAILK------YHHATCNAVSFSSDCKLMASASE 369 (383)
Q Consensus 338 ~~~~~~~~~------~h~~~v~~v~~spd~~~las~s~ 369 (383)
.++.+..+. ++...+.+++|.|++..+...+.
T Consensus 257 ~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 257 RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 688777664 34456789999998876655443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.15 E-value=0.02 Score=48.62 Aligned_cols=146 Identities=11% Similarity=-0.012 Sum_probs=82.5
Q ss_pred EEEEeCCCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcC--CcEEEEEccCCCCeeEEeeeeecCCCCe
Q 016769 233 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD--QKIVLYNLDHSTGSCVIKKEINLERPGI 310 (383)
Q Consensus 233 ~~sg~~dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d--~~i~~wdl~~~~~~~~~~~~~~~~~~~i 310 (383)
.++-..++.|.-||...... ...+.........+++++++..+++...+ ....++.++...................
T Consensus 54 y~~D~~~g~I~ri~p~g~~~-~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (319)
T d2dg1a1 54 FLLDVFEGNIFKINPETKEI-KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 132 (319)
T ss_dssp EEEETTTCEEEEECTTTCCE-EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred EEEECCCCEEEEEECCCCeE-EEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCC
Confidence 34455677788887765322 22222233456788999888655543322 3344554443332221111111223457
Q ss_pred EEEEECCCCcEEEEEeCC------CcEEEEEcCCCceEEEecccccceeEEEEeCCCCE-EEEEeCCCcEEEEeCCC
Q 016769 311 SGTSIRPDSKIAATAGWD------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKL-MASASEDSTVALWELYP 380 (383)
Q Consensus 311 ~~~~~~p~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~-las~s~d~~i~~w~~~~ 380 (383)
+.+++.|+|++.++.... +.+..++.+ ++.+..+...-...+.++|+||++. .++-+..+.|..|++..
T Consensus 133 nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~ 208 (319)
T d2dg1a1 133 DDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 208 (319)
T ss_dssp EEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence 889999999977654321 234444443 3333333333345688999999984 57778889999998753
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.0013 Score=59.63 Aligned_cols=137 Identities=13% Similarity=0.138 Sum_probs=82.7
Q ss_pred CCCcEEEEeCCCCCCceeeeec---cccCeEEEEEeCCCCceEEEE---------cCCcEEEEEccCCCCeeEEeeeeec
Q 016769 238 EDGSILVWDIRNPGIPLTAMKV---HLEPVLCLSIDESCNGGISGG---------ADQKIVLYNLDHSTGSCVIKKEINL 305 (383)
Q Consensus 238 ~dg~i~~wdl~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~s~~---------~d~~i~~wdl~~~~~~~~~~~~~~~ 305 (383)
.+|.|.+||+.+... ...+.. ....+....++++++.++... ..+.+.++|+...+...+. ....
T Consensus 35 ~~g~i~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~--~~~~ 111 (465)
T d1xfda1 35 QKGTVRLWNVETNTS-TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD--PPEV 111 (465)
T ss_dssp SSSCEEEBCGGGCCC-EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC--CTTC
T ss_pred CCCcEEEEECCCCCE-EEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeecc--CccC
Confidence 366788888876432 112222 223566778899988766542 3466788898765432211 1111
Q ss_pred CCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEEe-cccccce-----------------eEEEEeCCCCEEEEE
Q 016769 306 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL-KYHHATC-----------------NAVSFSSDCKLMASA 367 (383)
Q Consensus 306 ~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v-----------------~~v~~spd~~~las~ 367 (383)
....+....|+|||+.||=. .++.|.+.+...+...... .+-.+.| .++-|||||++||..
T Consensus 112 ~~~~l~~~~wSPDG~~iafv-~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~ 190 (465)
T d1xfda1 112 SNAKLQYAGWGPKGQQLIFI-FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (465)
T ss_dssp CSCCCSBCCBCSSTTCEEEE-ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred CccccceeeeccCCceEEEE-ecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence 22345567899999987754 4778888888766554322 2222211 466799999999987
Q ss_pred eC-CCcEEEEeC
Q 016769 368 SE-DSTVALWEL 378 (383)
Q Consensus 368 s~-d~~i~~w~~ 378 (383)
.. +..|..+.+
T Consensus 191 ~~D~s~V~~~~~ 202 (465)
T d1xfda1 191 AINDSRVPIMEL 202 (465)
T ss_dssp EEECTTSCEEEE
T ss_pred Eecccccceeec
Confidence 64 455666654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=96.32 E-value=0.051 Score=45.88 Aligned_cols=135 Identities=12% Similarity=0.085 Sum_probs=78.3
Q ss_pred CCcEEEEeCCCCCCceeeeec----cccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecC---CCCeE
Q 016769 239 DGSILVWDIRNPGIPLTAMKV----HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE---RPGIS 311 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~---~~~i~ 311 (383)
+++|..||..+..... .... ....-..+.+++++..++.+...+.+...+.+... ... ...... -...+
T Consensus 45 ~g~I~r~d~~~~~~~~-~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~--~~~-~~~~~~g~~~~~pn 120 (314)
T d1pjxa_ 45 AGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTF--EEI-AKKDSEGRRMQGCN 120 (314)
T ss_dssp CCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCE--EEC-CSBCTTSCBCBCCC
T ss_pred CCEEEEEECCCCcEEE-EECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcE--EEE-EeccccccccCCCc
Confidence 5667777776533211 1111 11224578899998877777777778888765321 111 111111 12357
Q ss_pred EEEECCCCcEEEEEeC---------------CCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-----EEEEEeCCC
Q 016769 312 GTSIRPDSKIAATAGW---------------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-----LMASASEDS 371 (383)
Q Consensus 312 ~~~~~p~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-----~las~s~d~ 371 (383)
.++|.|+|++.++-.. +|.|..++. .++... +.......+.++|+|++. ++++-+..+
T Consensus 121 dl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~ 198 (314)
T d1pjxa_ 121 DCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTK 198 (314)
T ss_dssp EEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTT
T ss_pred EEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeE-eeCCcceeeeeEECCCCCcceeEEEEEeeccc
Confidence 8999999988776432 233444443 233332 223344567899999874 566778888
Q ss_pred cEEEEeCC
Q 016769 372 TVALWELY 379 (383)
Q Consensus 372 ~i~~w~~~ 379 (383)
.|..|++.
T Consensus 199 ~i~~~d~~ 206 (314)
T d1pjxa_ 199 KLWSYDIK 206 (314)
T ss_dssp EEEEEEEE
T ss_pred ceEEeecc
Confidence 88888764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.22 E-value=0.15 Score=42.43 Aligned_cols=135 Identities=11% Similarity=0.041 Sum_probs=81.5
Q ss_pred CCcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCC
Q 016769 239 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 318 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 318 (383)
.+.|.-||.+++.. ..+.. ...+.++.+..++. ++.++. ..+.++|.+..................++.+.+.|+
T Consensus 39 ~~~I~r~d~~~g~~--~~~~~-~~~~~~i~~~~dg~-l~va~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~ 113 (295)
T d2ghsa1 39 ERELHELHLASGRK--TVHAL-PFMGSALAKISDSK-QLIASD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS 113 (295)
T ss_dssp GTEEEEEETTTTEE--EEEEC-SSCEEEEEEEETTE-EEEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT
T ss_pred CCEEEEEECCCCeE--EEEEC-CCCcEEEEEecCCC-EEEEEe-CccEEeecccceeeEEeeeecCCCcccceeeEECCC
Confidence 55667777665321 22221 23566787877664 444554 458888876543222111111112235788999999
Q ss_pred CcEEEEEeC----CCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEeCCCcEEEEeCC
Q 016769 319 SKIAATAGW----DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 379 (383)
Q Consensus 319 ~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s~d~~i~~w~~~ 379 (383)
|++.++... .+.-.+|.+..++...... .....+.++|+||++ ++++-+..+.|..+++.
T Consensus 114 G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d 178 (295)
T d2ghsa1 114 GALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 178 (295)
T ss_dssp SCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeec
Confidence 997665432 2345677777776544443 334568899999998 55777888889888874
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0064 Score=54.90 Aligned_cols=96 Identities=11% Similarity=0.158 Sum_probs=63.2
Q ss_pred cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEe---------CCCcEEEEEcCCCceEEE--ecccc
Q 016769 281 ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG---------WDRRVRIYNYRKGSALAI--LKYHH 349 (383)
Q Consensus 281 ~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~---------~dg~i~iwd~~~~~~~~~--~~~h~ 349 (383)
.++.|.+||+...+...++. ........+....||||+++++... ..+.+.++|+.++..... .....
T Consensus 35 ~~g~i~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~ 113 (465)
T d1xfda1 35 QKGTVRLWNVETNTSTVLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN 113 (465)
T ss_dssp SSSCEEEBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred CCCcEEEEECCCCCEEEEEc-CccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCc
Confidence 45668888887554433322 1122334567788999999987764 356788999988765432 22234
Q ss_pred cceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 016769 350 ATCNAVSFSSDCKLMASASEDSTVALWEL 378 (383)
Q Consensus 350 ~~v~~v~~spd~~~las~s~d~~i~~w~~ 378 (383)
..+....|||||+.||... ++.|.+.+.
T Consensus 114 ~~l~~~~wSPDG~~iafv~-~~nl~~~~~ 141 (465)
T d1xfda1 114 AKLQYAGWGPKGQQLIFIF-ENNIYYCAH 141 (465)
T ss_dssp CCCSBCCBCSSTTCEEEEE-TTEEEEESS
T ss_pred cccceeeeccCCceEEEEe-cceEEEEec
Confidence 4556678999999999876 456666665
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.82 E-value=0.059 Score=43.84 Aligned_cols=91 Identities=16% Similarity=0.118 Sum_probs=54.6
Q ss_pred CCceEEEEcCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCCCcEEEEEeC-CC-----cEEEEEcCCCceEEEec
Q 016769 273 CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW-DR-----RVRIYNYRKGSALAILK 346 (383)
Q Consensus 273 ~~~~~s~~~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~-dg-----~i~iwd~~~~~~~~~~~ 346 (383)
++.++-. .++.|.+.|++..... .+..........+|||||+.||-... ++ .|.+++...++......
T Consensus 12 G~~v~f~-~~~dl~~~d~~~g~~~-----~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~ 85 (281)
T d1k32a2 12 GDRIIFV-CCDDLWEHDLKSGSTR-----KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY 85 (281)
T ss_dssp TTEEEEE-ETTEEEEEETTTCCEE-----EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC
T ss_pred CCEEEEE-eCCcEEEEECCCCCEE-----EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee
Confidence 5544333 3555777787654321 12333456788899999998875542 22 36777777776543211
Q ss_pred ------ccccceeEEEEeCCCCEEEEEeC
Q 016769 347 ------YHHATCNAVSFSSDCKLMASASE 369 (383)
Q Consensus 347 ------~h~~~v~~v~~spd~~~las~s~ 369 (383)
.........+|+|||+.|+....
T Consensus 86 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 114 (281)
T d1k32a2 86 FSGKSTGRRMFTDVAGFDPDGNLIISTDA 114 (281)
T ss_dssp CCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred cCCCccCccccccccccCCCCCEEEEEEc
Confidence 12234567789999998886543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.47 E-value=1 Score=36.93 Aligned_cols=105 Identities=13% Similarity=0.166 Sum_probs=68.9
Q ss_pred eEEEEEeCCCCceE-EEEcCCcEEEEEccCCCCe----eEEeeeeecCCCCeEEEEECCCCcEEEEEeCCCcEEEEEcCC
Q 016769 264 VLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGS----CVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 338 (383)
Q Consensus 264 v~~~~~~~~~~~~~-s~~~d~~i~~wdl~~~~~~----~~~~~~~~~~~~~i~~~~~~p~~~~l~s~~~dg~i~iwd~~~ 338 (383)
-+.+.+++++..++ +-+..+.|..++++..... ...........+...++++..+|++.++.-..+.|..||. +
T Consensus 150 ~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~ 228 (295)
T d2ghsa1 150 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-D 228 (295)
T ss_dssp EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-T
T ss_pred cceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-C
Confidence 34677777777554 4445677888887643221 1111112223345788999999998877777889999995 6
Q ss_pred CceEEEecccccceeEEEEe-CCCCE-EEEEeC
Q 016769 339 GSALAILKYHHATCNAVSFS-SDCKL-MASASE 369 (383)
Q Consensus 339 ~~~~~~~~~h~~~v~~v~~s-pd~~~-las~s~ 369 (383)
++.+..+.--...+.+++|- ||.+. ++|...
T Consensus 229 G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 229 GNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence 88887776545678999996 67764 455444
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.94 E-value=0.065 Score=43.58 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=39.3
Q ss_pred ECCC--CcEEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEe
Q 016769 315 IRPD--SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 368 (383)
Q Consensus 315 ~~p~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s 368 (383)
++|| |+.+|=. .++.|.+.|+..++.. .+..+...+...+|||||++||..+
T Consensus 6 ~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~ 59 (281)
T d1k32a2 6 LNPDIHGDRIIFV-CCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRV 59 (281)
T ss_dssp EEEEEETTEEEEE-ETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEE
T ss_pred cCCCCCCCEEEEE-eCCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEE
Confidence 4688 8877644 4667888899887754 4555667788899999999988654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.16 E-value=2 Score=35.95 Aligned_cols=142 Identities=13% Similarity=0.147 Sum_probs=81.0
Q ss_pred CCcEEEEeCCCCCCceeeeecccc-------CeEEEEE--eCCCC-ceEEEE---cCCcEEEEEccCCCCeeEEeeeeec
Q 016769 239 DGSILVWDIRNPGIPLTAMKVHLE-------PVLCLSI--DESCN-GGISGG---ADQKIVLYNLDHSTGSCVIKKEINL 305 (383)
Q Consensus 239 dg~i~~wdl~~~~~~~~~~~~h~~-------~v~~~~~--~~~~~-~~~s~~---~d~~i~~wdl~~~~~~~~~~~~~~~ 305 (383)
.|.|.++|+.+.......+..... .-..+++ +.++. .+++.. ...+|.+++++..............
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 577888888764332222221100 1123333 33444 344443 4567889988766544433333322
Q ss_pred -CCCCeEEEEECCCCcEEEEEe--C-------------CCcEEEEEcCCCceEEEecccccceeEEEEeCCCC-EEEEEe
Q 016769 306 -ERPGISGTSIRPDSKIAATAG--W-------------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASAS 368 (383)
Q Consensus 306 -~~~~i~~~~~~p~~~~l~s~~--~-------------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~-~las~s 368 (383)
.....+.+++..+++++++-. . -++-.+|..+.++...... .-...+.|+++||++ .+++-+
T Consensus 147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t 225 (340)
T d1v04a_ 147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAEL 225 (340)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSSEEEEEEG
T ss_pred ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECCCCCEEEEEeC
Confidence 234578899888888887621 1 1234455554444322222 334579999999998 557778
Q ss_pred CCCcEEEEeCCCC
Q 016769 369 EDSTVALWELYPP 381 (383)
Q Consensus 369 ~d~~i~~w~~~~~ 381 (383)
..+.|+.|++..+
T Consensus 226 ~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 226 LAHKIHVYEKHAN 238 (340)
T ss_dssp GGTEEEEEEECTT
T ss_pred CCCeEEEEEeCCC
Confidence 8889999988644
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=91.70 E-value=3.6 Score=35.43 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=23.8
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEec
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLH 198 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~ 198 (383)
-|.+.+|++.|.++++-+-++..+.+++
T Consensus 13 yy~f~SgG~sG~v~v~G~PSmR~l~~ip 40 (459)
T d1fwxa2 13 YYGFWSSGQSGEMRILGIPSMRELMRVP 40 (459)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEE
T ss_pred EEEEeeCCccceEEEEecCCcceEEEee
Confidence 4677889999999999999999888775
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=89.97 E-value=2.1 Score=35.98 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=47.1
Q ss_pred eEEEEECCCCcEEEEEeCC-CcEEEEEcCCCceEEEec-ccccceeEEEEeCCCCEEEEEeCC------CcEEEEeCC
Q 016769 310 ISGTSIRPDSKIAATAGWD-RRVRIYNYRKGSALAILK-YHHATCNAVSFSSDCKLMASASED------STVALWELY 379 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~-~h~~~v~~v~~spd~~~las~s~d------~~i~~w~~~ 379 (383)
..+.++.+++++++.|+.+ .++.+||..+..-...-. ...+.-.+.+..+||++++.|+.+ ..+.+||..
T Consensus 78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~ 155 (387)
T d1k3ia3 78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 155 (387)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCC
Confidence 3456788999999988765 689999997765332111 112223456677899999988764 357888764
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.73 E-value=5.5 Score=31.68 Aligned_cols=125 Identities=13% Similarity=0.075 Sum_probs=71.8
Q ss_pred CcEEEEeCCCCCCceeeeeccccCeEEEEEeCCCCceEEEE-cCCcEEEEEccCCCCeeEEeeeeecCCCCeEEEEECCC
Q 016769 240 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 318 (383)
Q Consensus 240 g~i~~wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~i~~wdl~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 318 (383)
..|+-.++..... ..+......+..++|+...+.++-.. ..+.|..-+++..................+.++++.+.
T Consensus 10 ~~I~~~~l~~~~~--~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~ 87 (266)
T d1ijqa1 10 HEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (266)
T ss_dssp SSEEEEETTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CeEEEEECCCCcc--eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeec
Confidence 4588888876432 22323445667889988777665443 45667766665322211111112222345678888765
Q ss_pred Cc-EEEEEeCCCcEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEE
Q 016769 319 SK-IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMAS 366 (383)
Q Consensus 319 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las 366 (383)
++ ...+-...++|.+.+++.......+.........+++.|...+|.-
T Consensus 88 ~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~ 136 (266)
T d1ijqa1 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW 136 (266)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE
T ss_pred cceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEE
Confidence 54 4445556789999999766554444444556788999986554443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.36 E-value=1.8 Score=37.48 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=40.1
Q ss_pred eEEEEECCCCcEEEEEe-CCC----cEEEEEcCCCceEEEecccccceeEEEEeCCCCEEEEEeCC
Q 016769 310 ISGTSIRPDSKIAATAG-WDR----RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED 370 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~-~dg----~i~iwd~~~~~~~~~~~~h~~~v~~v~~spd~~~las~s~d 370 (383)
+.+++++||++++|-+- .+| +|+++|+.+++.+...-. ......++|++|++.|.....|
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~ 191 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYP 191 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEec
Confidence 34567899999877332 233 799999999987642211 1122567899999988766543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.76 E-value=8.8 Score=31.21 Aligned_cols=183 Identities=10% Similarity=0.176 Sum_probs=102.3
Q ss_pred ceeeeccCCcceEEEEecCCCCeeeEeccCcCCCCCCcCCCCCceeeEEEeecCCCCCCceEEEEEeCCCcEEEEeCCCC
Q 016769 171 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 250 (383)
Q Consensus 171 ~~~~~~g~~~~~i~~Wdl~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~dg~i~~wdl~~~ 250 (383)
+.+++-+ ..+++++|+++.+.+.....+.. ..+. .+.. ....-+++ +..|.=|+++..
T Consensus 75 ~IiALra--g~~LQiFnletK~klks~~~~e~----------VvfW----kWis---~~~L~lVT---~taVYHW~~~g~ 132 (327)
T d1utca2 75 KVIALKA--GKTLQIFNIEMKSKMKAHTMTDD----------VTFW----KWIS---LNTVALVT---DNAVYHWSMEGE 132 (327)
T ss_dssp SEEEEEE--TTEEEEEETTTTEEEEEEECSSC----------CCEE----EESS---SSEEEEEC---SSEEEEEESSSS
T ss_pred cEEEEec--CCeEEEEehhHhhhhceEEcCCC----------cEEE----EecC---CCEEEEEc---CCceEEEcccCC
Confidence 4555544 35899999999998876654321 1111 1111 11111222 567899999765
Q ss_pred CCceeeeecccc----CeEEEEEeCCCCceEEEE---cC----CcEEEEEccCCCCe---------------------eE
Q 016769 251 GIPLTAMKVHLE----PVLCLSIDESCNGGISGG---AD----QKIVLYNLDHSTGS---------------------CV 298 (383)
Q Consensus 251 ~~~~~~~~~h~~----~v~~~~~~~~~~~~~s~~---~d----~~i~~wdl~~~~~~---------------------~~ 298 (383)
..|.+.+..|.. .|.....+++.+.++..| .+ |.+.||..+..... .+
T Consensus 133 s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~l 212 (327)
T d1utca2 133 SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTL 212 (327)
T ss_dssp CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEE
T ss_pred CCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceE
Confidence 667777766643 344555577777765432 23 44567876532100 00
Q ss_pred Eee-------------eeec-CC-C-----C--------------eEEEEECCCCcEEEEEeCCCcEEEEEcCCCceEEE
Q 016769 299 IKK-------------EINL-ER-P-----G--------------ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI 344 (383)
Q Consensus 299 ~~~-------------~~~~-~~-~-----~--------------i~~~~~~p~~~~l~s~~~dg~i~iwd~~~~~~~~~ 344 (383)
+.. ++.. .. . . .-++.+++-...+..-+.-|.|++||++++..+..
T Consensus 213 f~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~ 292 (327)
T d1utca2 213 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 292 (327)
T ss_dssp EEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEE
Confidence 000 0000 00 0 0 11233444445677778999999999999999876
Q ss_pred ecccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 016769 345 LKYHHATCNAVSFSSDCKLMASASEDSTVAL 375 (383)
Q Consensus 345 ~~~h~~~v~~v~~spd~~~las~s~d~~i~~ 375 (383)
-+=-.+.|...+-..+..=++.-.++|.|..
T Consensus 293 nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 293 NRISGETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred eecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence 6545667776565555555566667776643
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=83.19 E-value=4.4 Score=33.81 Aligned_cols=69 Identities=9% Similarity=0.248 Sum_probs=47.0
Q ss_pred eEEEEECCCCcEEEEEeCCC-----------cEEEEEcCCCce--EE-EecccccceeEEEEeCCCCEEEEEeCC-CcEE
Q 016769 310 ISGTSIRPDSKIAATAGWDR-----------RVRIYNYRKGSA--LA-ILKYHHATCNAVSFSSDCKLMASASED-STVA 374 (383)
Q Consensus 310 i~~~~~~p~~~~l~s~~~dg-----------~i~iwd~~~~~~--~~-~~~~h~~~v~~v~~spd~~~las~s~d-~~i~ 374 (383)
........+++.++.|+.+. .+.+||..+++- .. ....|.......++.+||++++.|+.+ ..+.
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence 34455667888888888632 377899987642 11 122344445667889999999998766 5888
Q ss_pred EEeC
Q 016769 375 LWEL 378 (383)
Q Consensus 375 ~w~~ 378 (383)
+||.
T Consensus 102 ~yd~ 105 (387)
T d1k3ia3 102 LYDS 105 (387)
T ss_dssp EEEG
T ss_pred EecC
Confidence 8885
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.23 E-value=5.5 Score=35.93 Aligned_cols=48 Identities=10% Similarity=0.221 Sum_probs=35.0
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCceEEEecc----cccceeEEEEeCCCC-EEEEE
Q 016769 317 PDSKIAATAGWDRRVRIYNYRKGSALAILKY----HHATCNAVSFSSDCK-LMASA 367 (383)
Q Consensus 317 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~v~~spd~~-~las~ 367 (383)
..+..+.+|+.||+++.||.++|+.+..++- +..+ +.+..||+ |+|..
T Consensus 495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~G~qYv~i~ 547 (582)
T d1flga_ 495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---ITWEQDGEQYLGVT 547 (582)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEEE
T ss_pred EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEEEEEE
Confidence 3556777899999999999999999987652 2223 45667897 55543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=80.69 E-value=16 Score=31.28 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=47.1
Q ss_pred CeEEEEECCCCcEEEEEe-CCCcEEEEEcCCCce-----------E-EEecccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 016769 309 GISGTSIRPDSKIAATAG-WDRRVRIYNYRKGSA-----------L-AILKYHHATCNAVSFSSDCKLMASASEDSTVAL 375 (383)
Q Consensus 309 ~i~~~~~~p~~~~l~s~~-~dg~i~iwd~~~~~~-----------~-~~~~~h~~~v~~v~~spd~~~las~s~d~~i~~ 375 (383)
+..++.++|||+|+++++ .+.++.++|+++... + .... ...-....+|..+|.-..|---|..|--
T Consensus 276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~~g~aytslfids~v~k 354 (459)
T d1fwxa2 276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVK 354 (459)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEE
T ss_pred CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc-cCcCccccccCCCceEEEEeeccceEEE
Confidence 355789999999866655 699999999964211 1 1111 1223466688877765556668999999
Q ss_pred EeC
Q 016769 376 WEL 378 (383)
Q Consensus 376 w~~ 378 (383)
|++
T Consensus 355 w~~ 357 (459)
T d1fwxa2 355 WNI 357 (459)
T ss_dssp EEH
T ss_pred Eec
Confidence 997
|