Citrus Sinensis ID: 016798
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LZB8 | 634 | ABC transporter B family | yes | no | 0.992 | 0.597 | 0.672 | 1e-148 | |
| Q2LVL0 | 601 | Lipid A export ATP-bindin | yes | no | 0.942 | 0.599 | 0.377 | 9e-65 | |
| Q1QX69 | 579 | Lipid A export ATP-bindin | yes | no | 0.958 | 0.632 | 0.355 | 1e-58 | |
| P71082 | 580 | Putative multidrug export | yes | no | 0.965 | 0.636 | 0.351 | 1e-58 | |
| Q6AJW3 | 572 | Lipid A export ATP-bindin | yes | no | 0.945 | 0.631 | 0.348 | 2e-58 | |
| Q9KQW9 | 582 | Lipid A export ATP-bindin | yes | no | 0.979 | 0.642 | 0.351 | 8e-58 | |
| Q9JI39 | 715 | ATP-binding cassette sub- | yes | no | 0.958 | 0.511 | 0.365 | 5e-57 | |
| Q9HUG8 | 603 | Lipid A export ATP-bindin | yes | no | 0.968 | 0.613 | 0.350 | 6e-57 | |
| Q2YU20 | 578 | Putative multidrug export | yes | no | 0.952 | 0.629 | 0.359 | 7e-57 | |
| Q2G2M9 | 578 | Putative multidrug export | yes | no | 0.952 | 0.629 | 0.359 | 2e-56 |
| >sp|Q9LZB8|AB29B_ARATH ABC transporter B family member 29, chloroplastic OS=Arabidopsis thaliana GN=ABCB29 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 525 bits (1351), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/379 (67%), Positives = 323/379 (85%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M M+V SP L+L+SA+VIPS+AL+IAYLG+RLRKIS+++ ++ A LS YLNEVLPAIL
Sbjct: 209 MTAHMIVASPALTLVSAMVIPSVALLIAYLGDRLRKISRKAQIASAQLSTYLNEVLPAIL 268
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKANNAE+ ES RF+R A +DL E KK+KMK+LIPQ VQ++Y G+L I C G+++++G
Sbjct: 269 FVKANNAEISESVRFQRFARADLDERFKKKKMKSLIPQIVQVMYLGSLSIFCVGAVILAG 328
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
S ++VSF+ SL F+I+P+Q +GKAYNE KQGEPAIERLFDLT +SKVIE+P+A+
Sbjct: 329 SSLSSSAIVSFVASLAFLIDPVQDLGKAYNELKQGEPAIERLFDLTSLESKVIERPEAIQ 388
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L+ + G+V+ C+ISFKY +NM VLD LNLHI+AGETVAL+GPSGGGK+TL KLLLRLY+
Sbjct: 389 LEKVAGEVELCDISFKYDENMLPVLDGLNLHIKAGETVALVGPSGGGKTTLIKLLLRLYE 448
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P SG I++D D+++I+L+SLR+HVGLVSQD TLFSGT+A+NIGYRDL T IDM+RVE
Sbjct: 449 PSSGSIIIDKIDIKDIKLESLRKHVGLVSQDTTLFSGTIADNIGYRDLTTGIDMKRVELA 508
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R LP+GYNT +GPRGSSLSGGQ+QRLAIARALYQ SS+LILDEATSALDS
Sbjct: 509 AKTANADEFIRNLPEGYNTGVGPRGSSLSGGQKQRLAIARALYQKSSILILDEATSALDS 568
Query: 361 RSELLVRQAVDRLLGHHTV 379
SELLVR+A++R++ HTV
Sbjct: 569 LSELLVREALERVMQDHTV 587
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2LVL0|MSBA_SYNAS Lipid A export ATP-binding/permease protein MsbA OS=Syntrophus aciditrophicus (strain SB) GN=msbA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (631), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 222/371 (59%), Gaps = 11/371 (2%)
Query: 12 LSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCE 71
L++I+ +V P IA G+++R ++ ++ +++ SL+ L E + V+A E E
Sbjct: 175 LAIIAMIVFPLTIYPIAKFGQKMRSVATRTQVTMGSLTTLLQETISGTRIVRAFCMEAHE 234
Query: 72 SARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFG----ALFILCGGSLLVSGGSFDGCS 127
+ RF R + LK + AL ++ + G A I GG ++ G S G +
Sbjct: 235 NQRFARENEKLMHLALKSVSINALSSPFME--FLGGIGIAAIIFYGGYQVIKGSSTPG-T 291
Query: 128 LVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGD 187
SF+T+L+ + EP++ + N +QG +R+F + ++++ +AV L I+
Sbjct: 292 FFSFLTALIMLYEPVKRLTNVNNTIQQGIAGAQRVFSIIDLVPDIVDRDEAVELPRISEK 351
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ NISF Y D+ P VL +NL IRAGE VA +G SGGGK+TL L+ R YD +G IL
Sbjct: 352 IEIRNISFAY-DDTP-VLRNINLTIRAGEVVAFVGMSGGGKTTLVNLIPRFYDVTAGQIL 409
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
+D HD++++ L SLRR +G+V+Q LF+ TV NI Y + + AR ANA
Sbjct: 410 IDGHDIRDVSLISLRRQIGIVTQQTILFNDTVRNNIAYGS--QGCSEKEIIEAARAANAH 467
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367
+F+ LP+GY+T IG G+ LSGG+RQR++IARAL +N+ +LILDEATS+LD+ +E+ V+
Sbjct: 468 DFIVNLPEGYDTVIGELGTKLSGGERQRISIARALLKNAPILILDEATSSLDTEAEMEVQ 527
Query: 368 QAVDRLLGHHT 378
+A++RL+ T
Sbjct: 528 EALERLMKGRT 538
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Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Syntrophus aciditrophicus (strain SB) (taxid: 56780) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q1QX69|MSBA_CHRSD Lipid A export ATP-binding/permease protein MsbA OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=msbA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 217/377 (57%), Gaps = 11/377 (2%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
+ + +L + +L+LI V P + LV+ Y +R R++S++ S+ ++ +E L
Sbjct: 152 LVSYLLWTNWMLTLIFMAVTPLIGLVVNYTSKRFRRLSRRIQNSMGDVTHVASEALSGYR 211
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYF----GALFILCGGSL 116
V+ + AE E ARF + + + +K KA+ +QL+ G +++ +L
Sbjct: 212 VVRTHGAEAYEKARFAEASDYNREQSMKVALTKAVSTPVIQLLVALSLAGLVWLAMSPAL 271
Query: 117 LVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKP 176
+ S V+FIT+ M +P++ + + + ++G A + LF L + +V E
Sbjct: 272 M---ASMTPGEFVAFITAASLMAKPVRQLTEVNSTIQKGLSASQELFGLLEQPPEVDEGS 328
Query: 177 DAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236
+ I+G V+F + F+Y ++ VL ++L + GE +A++G SG GKSTL L+
Sbjct: 329 YVPA--RIDGRVRFEGVRFRYGEDQAEVLKGIDLDVPQGEMIAIVGRSGSGKSTLVSLMP 386
Query: 237 RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296
R Y P G +L+DD D+Q L LR+ + LVSQ +TLF+ T+A NI Y D E
Sbjct: 387 RFYRPTEGRVLLDDVDIQEYALSPLRQRIALVSQQVTLFNTTIAANIAYGH--PDADREA 444
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
VE AR+A A EF+ LP GY+T +G G LSGGQRQRLAIARA+++++ +L+LDEATS
Sbjct: 445 VESAARSAYAHEFIERLPNGYDTVVGDNGVMLSGGQRQRLAIARAIFKDAPLLVLDEATS 504
Query: 357 ALDSRSELLVRQAVDRL 373
ALD+ SE ++QA++R+
Sbjct: 505 ALDTESERYIQQALERV 521
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Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) (taxid: 290398) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|P71082|YGAD_BACSU Putative multidrug export ATP-binding/permease protein YgaD OS=Bacillus subtilis (strain 168) GN=ygaD PE=3 SV=2 | Back alignment and function description |
|---|
Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/378 (35%), Positives = 215/378 (56%), Gaps = 9/378 (2%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
ML + L+LIS ++ P + + Y RLRK++++ ++A + +L+E + + +++
Sbjct: 157 MLTLDVKLTLISIVLFPLYGISVKYFYGRLRKLTRERSQALAQVQGHLHERIQGMPVIRS 216
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGA--LFILCGGSLLVSGGS 122
E E A+F L + ++ A V I A + I C G +++G
Sbjct: 217 FAIEDHEQAQFNEKNGHFLDKAIRHTNWNAKTFAVVNTITDLAPLIVIACAGYFVINGPL 276
Query: 123 FDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLD 182
G ++V+F+ + M P++ + + Q +++R+F+ ++ +KP+A+ D
Sbjct: 277 TVG-TMVAFVGYIDRMYNPVRRLINSSTTLTQSIASMDRVFEFIDEPYELTDKPNAIKAD 335
Query: 183 HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242
I G V+F N+SF+Y + +L ++L + GETVAL+G SGGGKSTL L+ R YD
Sbjct: 336 QIRGGVEFQNVSFQYEKDKENILHDVSLKVNRGETVALVGMSGGGKSTLVSLIPRFYDVT 395
Query: 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID--MERVEHT 300
SG +L+D D+++ SLR VG+V QD LFS T+ ENI + K D +E +
Sbjct: 396 SGRLLIDGTDIRDYEARSLRNQVGMVLQDTFLFSETIRENIA----IGKPDATLEEIIEA 451
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+ ANA EF+ + P+GY T +G RG LSGGQ+QR++IAR +N +LILDEATSALD
Sbjct: 452 AKAANAHEFIMSFPEGYETRVGERGVKLSGGQKQRISIARVFLKNPPLLILDEATSALDL 511
Query: 361 RSELLVRQAVDRLLGHHT 378
SE +++A+D+L T
Sbjct: 512 ESEHYIQEAMDKLAKDRT 529
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May be involved in multidrug export. Transmembrane domains (TMD) form a pore in the cell membrane and the ATP-binding domain (NBD) is responsible for energy generation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q6AJW3|MSBA_DESPS Lipid A export ATP-binding/permease protein MsbA OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=msbA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/370 (34%), Positives = 215/370 (58%), Gaps = 9/370 (2%)
Query: 12 LSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCE 71
L+LI L+IP A+ I G+ RK+S ++ A +S L+E + VKA E E
Sbjct: 161 LALICFLIIPLAAIPIVKFGKIFRKLSTKTQEETAEVSNMLHETISGSRIVKAFCREDYE 220
Query: 72 SARFRRLAHSDLCELLKKRKMKALIPQTVQLI--YFGALFILCGGSLLVSGGSFDGCSLV 129
RF R + +K K + +++I + A I GGS +++G + G +
Sbjct: 221 VERFHRQVETLFTITMKNAKYRVFQSPLMEIIGGFAVAGIIWVGGSEVINGSATPG-TFF 279
Query: 130 SFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVK 189
+F+T+++ +P++ V + + +QG + +R+F + K ++ +KP+A SL ++
Sbjct: 280 AFLTAMITAYDPVKRVSQVNSTIQQGLASAQRVFAILDIKPEIEDKPEATSLAPFKESIE 339
Query: 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249
F ++SF Y +L +NL + AGE +A++GPSGGGK+TL L+ R D G I +D
Sbjct: 340 FHDVSFSYGTEK--ILSHINLKVPAGEALAIVGPSGGGKTTLTNLIPRFIDLQEGSITID 397
Query: 250 DHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEHTARTANADE 308
D++++ +SLR + +V+Q LF+ T+ NI Y +D T+ E + A+ A+A
Sbjct: 398 GTDIRDVTTNSLRNQIAMVTQQTILFNDTIRNNIAYGKDSCTE---EEIRRAAKAAHALT 454
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ 368
F+ LP G++T +G G+ LSGGQRQR++IARAL ++ +LILDEATSALD+ SE V++
Sbjct: 455 FIEELPNGFDTALGEGGAKLSGGQRQRISIARALLADAPILILDEATSALDTESEREVQK 514
Query: 369 AVDRLLGHHT 378
A++ L+ + T
Sbjct: 515 ALENLMQNRT 524
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Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Desulfotalea psychrophila (strain LSv54 / DSM 12343) (taxid: 177439) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q9KQW9|MSBA_VIBCH Lipid A export ATP-binding/permease protein MsbA OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=msbA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 133/378 (35%), Positives = 216/378 (57%), Gaps = 4/378 (1%)
Query: 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFV 62
T M S LSL+ +V P +A I+++ +R RKIS+ ++ +++ ++L V
Sbjct: 158 TLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVV 217
Query: 63 KANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALF-ILCGGSLLVSGG 121
+ + E RF ++++S + +K +++ +Q+I ALF +L S+
Sbjct: 218 LSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRA 277
Query: 122 SFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL 181
+ +++ ++ P++ + +EF++G A + LF L +++
Sbjct: 278 ELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE--RDNGKYEA 335
Query: 182 DHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241
+ +NG+V +++F Y L ++ I G+TVAL+G SG GKST+A L R YD
Sbjct: 336 ERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395
Query: 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA 301
SG I +D HDV++ +L +LRRH LVSQ++ LF+ T+A NI Y + E++E A
Sbjct: 396 DSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYA-AEGEYTREQIEQAA 454
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
R A+A EF+ +PQG +T IG G+SLSGGQRQR+AIARAL +++ VLILDEATSALD+
Sbjct: 455 RQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
Query: 362 SELLVRQAVDRLLGHHTV 379
SE ++ A+D L + TV
Sbjct: 515 SERAIQAALDELQKNKTV 532
|
Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q9JI39|ABCBA_MOUSE ATP-binding cassette sub-family B member 10, mitochondrial OS=Mus musculus GN=Abcb10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (565), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 219/388 (56%), Gaps = 22/388 (5%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M +SP L+ V+P ++++ G LRK+SK + S+A + E + I ++A
Sbjct: 272 MFFVSPSLATFVLSVVPPISVLAVIYGRYLRKLSKATQDSLAEATQLAEERIGNIRTIRA 331
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGA---------LFILCGGS 115
EM E ++ + +LL+ + +AL + +FGA L +L G
Sbjct: 332 FGKEMTEVEKY----TGRVDQLLQLAQKEAL----ARAGFFGAAGLSGNLIVLSVLYKGG 383
Query: 116 LLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEK 175
LL+ L SF+ ++ I G+ Y+E +G A RL++L + + + +
Sbjct: 384 LLMGSAHMTVGELSSFLMYAFWVGLSIGGLSSFYSELMKGLGAGGRLWELLERQPR-LPF 442
Query: 176 PDAVSLDH--INGDVKFCNISFKYADNMPL-VLDQLNLHIRAGETVALIGPSGGGKSTLA 232
+ + LD G ++F N+ F Y + V +L I +G AL+GPSG GKST+
Sbjct: 443 NEGMVLDEKTFQGALEFRNVHFTYPARPEVSVFQDFSLSIPSGSVTALVGPSGSGKSTVV 502
Query: 233 KLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTK 291
LLLRLYDP SG + +D HD++ + LR +G VSQ+ LFS +VAENI Y D ++
Sbjct: 503 SLLLRLYDPNSGTVSLDGHDIRQLNPVWLRSKIGTVSQEPVLFSCSVAENIAYGADNLSS 562
Query: 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351
+ ++VE A ANA EF+R+ PQG++T +G +G LSGGQ+QR+AIARAL +N +L+L
Sbjct: 563 VTAQQVERAAEVANAAEFIRSFPQGFDTVVGEKGILLSGGQKQRIAIARALLKNPKILLL 622
Query: 352 DEATSALDSRSELLVRQAVDRLLGHHTV 379
DEATSALD+ +E LV++A+DRL+ TV
Sbjct: 623 DEATSALDAENEHLVQEALDRLMEGRTV 650
|
May mediate critical mitochondrial transport functions related to heme biosynthesis. Mus musculus (taxid: 10090) |
| >sp|Q9HUG8|MSBA_PSEAE Lipid A export ATP-binding/permease protein MsbA OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=msbA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 131/374 (35%), Positives = 217/374 (58%), Gaps = 4/374 (1%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
+L ++ L+L+ ++P +A+++ + RK SK+ +++ ++ +E + V++
Sbjct: 176 LLWMNWKLTLVMLAILPVIAVMVTTASRKFRKQSKKIQVAMGDVTHVASETIQGYRVVRS 235
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSGGSFD 124
E E RF + S+ + L+ K A+ +QL+ + A+ IL L + G +
Sbjct: 236 FGGEAYEEKRFLDASQSNTDKQLRMTKTGAVYTPMLQLVIYVAMAILMFLVLWLRGDASA 295
Query: 125 GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHI 184
G LV++IT+ + +PI+ + + + ++G E +F+ + E V + +
Sbjct: 296 G-DLVAYITAAGLLPKPIRQLSEVSSTVQRGVAGAESIFE--QLDEAAEEDQGTVEKERV 352
Query: 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+G ++ N+SF+Y VLD ++ G+ +AL+G SG GKSTLA L+ R Y G
Sbjct: 353 SGRLEVRNLSFRYPGTDKQVLDDISFIAEPGQMIALVGRSGSGKSTLANLVPRFYQHNDG 412
Query: 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTA 304
IL+D +V++ RL +LRRH+ LV+Q +TLF+ +VA NI Y DL E +E A+ A
Sbjct: 413 KILLDGVEVEDYRLRNLRRHIALVTQQVTLFNDSVANNIAYGDL-AGAPREEIERAAKAA 471
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
NA EF+ LPQG++T +G G LSGGQRQRLAIARAL +++ +LILDEATSALD+ SE
Sbjct: 472 NAKEFIDNLPQGFDTEVGENGVLLSGGQRQRLAIARALLKDAPLLILDEATSALDTESER 531
Query: 365 LVRQAVDRLLGHHT 378
++ A+D ++ T
Sbjct: 532 HIQAALDEVMKGRT 545
|
Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q2YU20|Y1799_STAAB Putative multidrug export ATP-binding/permease protein SAB1799c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1799c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (563), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 134/373 (35%), Positives = 205/373 (54%), Gaps = 9/373 (2%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M + L+L + + P L + RLRK++++ ++A + +L+E + I VK+
Sbjct: 156 MFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKS 215
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSF 123
E E+ F + + L LK + A T+ + G + ++ G+ L GS
Sbjct: 216 FAIEDNEAKNFDKKNANFLTRALKHTRWNAYSFATINTVTDIGPIIVIGVGAYLAISGSI 275
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
+L +F+ L + P++ + ++ Q +++R+F L + A ++
Sbjct: 276 TVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEI 335
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
G + +++F+Y DN +L +NL I GETVA +G SGGGKSTL L+ R YD S
Sbjct: 336 KQGRIDIYHVNFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM---TKIDMERVEHT 300
G IL+D H++++ SLR +GLV QD LFS TV ENI L+ T D E VE
Sbjct: 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI----LLGRPTATDEEVVE-V 450
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+ ANA +F+ LPQGY+T +G RG LSGGQ+QRL+IAR N +LILDEATSALD
Sbjct: 451 AKVANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 510
Query: 361 RSELLVRQAVDRL 373
SE ++++A+D L
Sbjct: 511 ESESIIQEALDVL 523
|
May be involved in multidrug export. Transmembrane domains (TMD) form a pore in the cell membrane and the ATP-binding domain (NBD) is responsible for energy generation. Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q2G2M9|Y2003_STAA8 Putative multidrug export ATP-binding/permease protein SAOUHSC_02003 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02003 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/373 (35%), Positives = 204/373 (54%), Gaps = 9/373 (2%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M + L+L + + P L + RLRK++++ ++A + +L+E + I VK+
Sbjct: 156 MFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKS 215
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSF 123
E E+ F + + L LK + A + + G + ++ G+ L GS
Sbjct: 216 FAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSI 275
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
+L +F+ L + P++ + ++ Q +++R+F L + A ++
Sbjct: 276 TVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEI 335
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
G + ++SF+Y DN +L +NL I GETVA +G SGGGKSTL L+ R YD S
Sbjct: 336 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM---TKIDMERVEHT 300
G IL+D H++++ SLR +GLV QD LFS TV ENI L+ T D E VE
Sbjct: 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI----LLGRPTATDEEVVE-A 450
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+ ANA +F+ LPQGY+T +G RG LSGGQ+QRL+IAR N +LILDEATSALD
Sbjct: 451 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 510
Query: 361 RSELLVRQAVDRL 373
SE ++++A+D L
Sbjct: 511 ESESIIQEALDVL 523
|
May be involved in multidrug export. Transmembrane domains (TMD) form a pore in the cell membrane and the ATP-binding domain (NBD) is responsible for energy generation. Staphylococcus aureus (strain NCTC 8325) (taxid: 93061) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | ||||||
| 224088551 | 570 | ABC transporter family, retinal flippase | 0.992 | 0.664 | 0.786 | 1e-178 | |
| 255578947 | 650 | abc transporter, putative [Ricinus commu | 0.992 | 0.583 | 0.775 | 1e-176 | |
| 225440860 | 630 | PREDICTED: ABC transporter B family memb | 0.992 | 0.601 | 0.773 | 1e-172 | |
| 297740125 | 723 | unnamed protein product [Vitis vinifera] | 0.992 | 0.524 | 0.773 | 1e-171 | |
| 356537105 | 605 | PREDICTED: ABC transporter B family memb | 0.992 | 0.626 | 0.720 | 1e-164 | |
| 297810479 | 635 | hypothetical protein ARALYDRAFT_487170 [ | 0.992 | 0.596 | 0.672 | 1e-151 | |
| 15237574 | 634 | ABC transporter B family member 29 [Arab | 0.992 | 0.597 | 0.672 | 1e-146 | |
| 449462954 | 643 | PREDICTED: ABC transporter B family memb | 0.992 | 0.589 | 0.701 | 1e-146 | |
| 116310346 | 699 | OSIGBa0134P10.6 [Oryza sativa Indica Gro | 0.992 | 0.542 | 0.591 | 1e-130 | |
| 357167520 | 640 | PREDICTED: ABC transporter B family memb | 0.992 | 0.592 | 0.588 | 1e-130 |
| >gi|224088551|ref|XP_002308470.1| ABC transporter family, retinal flippase subfamily [Populus trichocarpa] gi|222854446|gb|EEE91993.1| ABC transporter family, retinal flippase subfamily [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 298/379 (78%), Positives = 347/379 (91%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
MA++MLVISP LSLISA+VIP AL IAYLG RLRKISK++ L+I++LSAYLNEVLPAIL
Sbjct: 146 MASRMLVISPALSLISAMVIPCTALAIAYLGTRLRKISKKAQLTISALSAYLNEVLPAIL 205
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKA+NAE CE ARF RLA++DL LL KRKMKA IPQ VQ+IYFGAL ILC GS++VS
Sbjct: 206 FVKASNAEFCEIARFERLAYADLSALLTKRKMKAFIPQIVQIIYFGALSILCVGSMVVSS 265
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
G FDGCS+VSFITSL+F++EPIQ VGKAYNE+KQGEPAIERLFDLT+FKSKV EKPDAV
Sbjct: 266 GCFDGCSMVSFITSLIFVVEPIQDVGKAYNEWKQGEPAIERLFDLTRFKSKVTEKPDAVD 325
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
LDH++GDVKFC+ISF+Y +N PLVL+ LNLHI+AGETVAL+GPSGGGK+TL K+LLRLYD
Sbjct: 326 LDHVSGDVKFCDISFRYGENSPLVLNGLNLHIKAGETVALVGPSGGGKTTLIKMLLRLYD 385
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
PL GCILVD+ ++QN++L+SLRRHVGLVSQDI+LFSGTVAENIGYRD+MTKIDME+VE
Sbjct: 386 PLHGCILVDNQNIQNVQLESLRRHVGLVSQDISLFSGTVAENIGYRDIMTKIDMEKVELA 445
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R LP+GY T+IGPRGSSLSGGQ+QRLAIARALYQ+SS+LILDEATSALDS
Sbjct: 446 AQTANADEFIRKLPKGYQTNIGPRGSSLSGGQKQRLAIARALYQDSSILILDEATSALDS 505
Query: 361 RSELLVRQAVDRLLGHHTV 379
RSELLVRQAV+RL+ +HTV
Sbjct: 506 RSELLVRQAVERLMENHTV 524
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578947|ref|XP_002530326.1| abc transporter, putative [Ricinus communis] gi|223530130|gb|EEF32042.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust.
Identities = 294/379 (77%), Positives = 342/379 (90%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
MA++ML ISPVLSLISA+VIP MA IA LGERLRKISK++HLSIA+LSAYLNEVLPAIL
Sbjct: 224 MASRMLAISPVLSLISAMVIPCMAFAIACLGERLRKISKKAHLSIATLSAYLNEVLPAIL 283
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKANN E+CESARF+RLAH+DL E KK+ MK LIPQ +Q+IYFGALF+LC GS++VS
Sbjct: 284 FVKANNGELCESARFQRLAHADLTEHFKKKNMKVLIPQIIQIIYFGALFMLCCGSMVVSC 343
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
G FDGCS+VSF+TSLVF++EPIQ VGKAYNE+KQGEPAIERLFDLT KSKVIEK +AV
Sbjct: 344 GCFDGCSMVSFVTSLVFLVEPIQDVGKAYNEWKQGEPAIERLFDLTMLKSKVIEKTEAVD 403
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
LDH+ GDVKFC++SF+Y DN LVL++LNLHI+AGET+ALIGPSGGGK+TL KLLL LYD
Sbjct: 404 LDHVIGDVKFCDVSFRYGDNSSLVLNRLNLHIKAGETIALIGPSGGGKTTLVKLLLHLYD 463
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P SGCILVD+ ++ NI L+SLR+HVGLVSQD TLFSGT+AENIGYRDLMT+IDME+VE
Sbjct: 464 PSSGCILVDNQNINNILLESLRKHVGLVSQDTTLFSGTIAENIGYRDLMTEIDMEKVEMA 523
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R LP+GY T+IGPRGSSLSGGQ+QRLAIARALYQ+SS+LILDEATSALDS
Sbjct: 524 AKTANADEFIRKLPKGYKTNIGPRGSSLSGGQKQRLAIARALYQDSSILILDEATSALDS 583
Query: 361 RSELLVRQAVDRLLGHHTV 379
RSELLVRQA+ RL+ +HTV
Sbjct: 584 RSELLVRQALQRLMENHTV 602
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440860|ref|XP_002276489.1| PREDICTED: ABC transporter B family member 29, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 293/379 (77%), Positives = 340/379 (89%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
MATQML ISP LSLISALVIP M+LVIA+LGERLRKISK++HLSIA+LSAYLNE+LP+IL
Sbjct: 205 MATQMLFISPTLSLISALVIPFMSLVIAHLGERLRKISKRAHLSIAALSAYLNEILPSIL 264
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKA+NAE+ ESARFRRLAH+DL E LKKRKMKALIPQ +Q+IYFGAL I GSL+V
Sbjct: 265 FVKASNAELSESARFRRLAHTDLSERLKKRKMKALIPQIMQIIYFGALSIFFVGSLVVPS 324
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
G+ DG LVSF+TSLV +I+PIQGVGKAYNE KQGEPAIERLFDLT+F+S+V+EKPDAV
Sbjct: 325 GALDGSLLVSFVTSLVLLIDPIQGVGKAYNELKQGEPAIERLFDLTRFESQVLEKPDAVD 384
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
LD + G+VKFCNISF+Y D MPL+L+ L+LHI+AGETVAL+GPSGGGK+TL KLLLRLYD
Sbjct: 385 LDSVIGEVKFCNISFRYGDRMPLILNGLDLHIKAGETVALVGPSGGGKTTLVKLLLRLYD 444
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
PL GC+++D+H++Q IRL SLRRHVGLVSQDITL SGTV ENIGYRDLMT IDMERVE
Sbjct: 445 PLCGCVILDNHNIQGIRLKSLRRHVGLVSQDITLLSGTVVENIGYRDLMTTIDMERVELA 504
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R L +GY T+IGPRGS+LSGGQ+QR+AIARALYQN S+LILDEATSALDS
Sbjct: 505 AQTANADEFIRNLSEGYQTNIGPRGSTLSGGQKQRIAIARALYQNCSILILDEATSALDS 564
Query: 361 RSELLVRQAVDRLLGHHTV 379
RSELLVRQAV+RL+ + TV
Sbjct: 565 RSELLVRQAVERLMENRTV 583
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740125|emb|CBI30307.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 293/379 (77%), Positives = 340/379 (89%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
MATQML ISP LSLISALVIP M+LVIA+LGERLRKISK++HLSIA+LSAYLNE+LP+IL
Sbjct: 299 MATQMLFISPTLSLISALVIPFMSLVIAHLGERLRKISKRAHLSIAALSAYLNEILPSIL 358
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKA+NAE+ ESARFRRLAH+DL E LKKRKMKALIPQ +Q+IYFGAL I GSL+V
Sbjct: 359 FVKASNAELSESARFRRLAHTDLSERLKKRKMKALIPQIMQIIYFGALSIFFVGSLVVPS 418
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
G+ DG LVSF+TSLV +I+PIQGVGKAYNE KQGEPAIERLFDLT+F+S+V+EKPDAV
Sbjct: 419 GALDGSLLVSFVTSLVLLIDPIQGVGKAYNELKQGEPAIERLFDLTRFESQVLEKPDAVD 478
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
LD + G+VKFCNISF+Y D MPL+L+ L+LHI+AGETVAL+GPSGGGK+TL KLLLRLYD
Sbjct: 479 LDSVIGEVKFCNISFRYGDRMPLILNGLDLHIKAGETVALVGPSGGGKTTLVKLLLRLYD 538
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
PL GC+++D+H++Q IRL SLRRHVGLVSQDITL SGTV ENIGYRDLMT IDMERVE
Sbjct: 539 PLCGCVILDNHNIQGIRLKSLRRHVGLVSQDITLLSGTVVENIGYRDLMTTIDMERVELA 598
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R L +GY T+IGPRGS+LSGGQ+QR+AIARALYQN S+LILDEATSALDS
Sbjct: 599 AQTANADEFIRNLSEGYQTNIGPRGSTLSGGQKQRIAIARALYQNCSILILDEATSALDS 658
Query: 361 RSELLVRQAVDRLLGHHTV 379
RSELLVRQAV+RL+ + TV
Sbjct: 659 RSELLVRQAVERLMENRTV 677
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537105|ref|XP_003537071.1| PREDICTED: ABC transporter B family member 29, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 273/379 (72%), Positives = 332/379 (87%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M QMLVISP LSLISA+++P M LV+ +LG+ LRKISK++H+SIA+LSAYLNEVLPAIL
Sbjct: 179 MMMQMLVISPTLSLISAMIVPCMVLVVTFLGQELRKISKEAHVSIAALSAYLNEVLPAIL 238
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKANNA+ CE+ RF+RLA D LKK+KMKALIPQ +Q IYFG L ILC GSL++S
Sbjct: 239 FVKANNAQSCENTRFKRLALMDYNARLKKKKMKALIPQVIQAIYFGVLSILCAGSLMISR 298
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
GS D SLVSF+TSL+F+I+PIQ VGKAYNE++QGEPA ERL +T+FK+KV+EKPDA
Sbjct: 299 GSLDRYSLVSFVTSLLFLIQPIQDVGKAYNEWRQGEPAAERLLAMTRFKNKVVEKPDAAD 358
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
LD + GD+KFC++SF Y D+M LVL+ LNLHI++GE VA++GPSGGGK+TL KLLLRLYD
Sbjct: 359 LDRVTGDLKFCDVSFGYNDDMALVLNALNLHIKSGEIVAIVGPSGGGKTTLVKLLLRLYD 418
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P+SGCIL+D+H++QNIRL SLRRHV +VSQDITLFSGTVAENIGYRDL TKIDM+RV+H
Sbjct: 419 PISGCILIDNHNIQNIRLASLRRHVSVVSQDITLFSGTVAENIGYRDLTTKIDMDRVKHA 478
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TA+ADEF++ LP+GY T+IGPRGS+LSGGQRQRLAIARA YQNSS+LILDEATS+LDS
Sbjct: 479 AQTAHADEFIKKLPEGYKTNIGPRGSTLSGGQRQRLAIARAFYQNSSILILDEATSSLDS 538
Query: 361 RSELLVRQAVDRLLGHHTV 379
+SELLVRQAV+RL+ + TV
Sbjct: 539 KSELLVRQAVERLMQNRTV 557
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810479|ref|XP_002873123.1| hypothetical protein ARALYDRAFT_487170 [Arabidopsis lyrata subsp. lyrata] gi|297318960|gb|EFH49382.1| hypothetical protein ARALYDRAFT_487170 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/379 (67%), Positives = 321/379 (84%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M M+V SP L+L+SA+VIPS+AL+ AYLG+RLRKIS+++ ++ A LS YLNEVLPAIL
Sbjct: 210 MTAHMIVASPALTLVSAMVIPSVALLTAYLGDRLRKISRKAQIASAQLSTYLNEVLPAIL 269
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKANNAE+ ES RF+R A + L E KK+KMK+LIPQ VQ++Y G+L I C G+++++G
Sbjct: 270 FVKANNAEISESVRFQRFARAALDENFKKKKMKSLIPQIVQVMYLGSLSIFCVGAVILAG 329
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
S ++VSF+ SL F+I+P+Q +GKAYNE KQGEPAIERLFDLT +SKVIE+P+A+
Sbjct: 330 SSLSSSAIVSFVASLAFLIDPVQDLGKAYNELKQGEPAIERLFDLTSLESKVIERPEAIQ 389
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L+ + G+V+ C+ISFKY +NM VLD LNLHI+AGETVAL+GPSGGGK+TL KLLLRLY+
Sbjct: 390 LEKVAGEVELCDISFKYDENMLPVLDGLNLHIKAGETVALVGPSGGGKTTLIKLLLRLYE 449
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P SG I +D D+++I+L+SLR+HVGLVSQD TLFSGT+A+NIGYRDL T IDM+RVE
Sbjct: 450 PSSGSIFIDKSDIKDIKLESLRKHVGLVSQDTTLFSGTIADNIGYRDLTTGIDMKRVELA 509
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R LP+GYNT +GPRGSSLSGGQ+QRLAIARALYQNSSVLILDEATSALDS
Sbjct: 510 AKTANADEFIRNLPEGYNTGVGPRGSSLSGGQKQRLAIARALYQNSSVLILDEATSALDS 569
Query: 361 RSELLVRQAVDRLLGHHTV 379
SELLVR+A++R++ HTV
Sbjct: 570 LSELLVREALERVMQDHTV 588
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237574|ref|NP_196011.1| ABC transporter B family member 29 [Arabidopsis thaliana] gi|75335698|sp|Q9LZB8.1|AB29B_ARATH RecName: Full=ABC transporter B family member 29, chloroplastic; Short=ABC transporter ABCB.29; Short=AtABCB29; AltName: Full=ABC2 homolog 12; Flags: Precursor gi|7406401|emb|CAB85511.1| ABC transporter-like protein [Arabidopsis thaliana] gi|16604565|gb|AAL24084.1| putative ABC transporter protein [Arabidopsis thaliana] gi|20259177|gb|AAM14304.1| putative ABC transporter [Arabidopsis thaliana] gi|332003288|gb|AED90671.1| ABC transporter B family member 29 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 255/379 (67%), Positives = 323/379 (85%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M M+V SP L+L+SA+VIPS+AL+IAYLG+RLRKIS+++ ++ A LS YLNEVLPAIL
Sbjct: 209 MTAHMIVASPALTLVSAMVIPSVALLIAYLGDRLRKISRKAQIASAQLSTYLNEVLPAIL 268
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKANNAE+ ES RF+R A +DL E KK+KMK+LIPQ VQ++Y G+L I C G+++++G
Sbjct: 269 FVKANNAEISESVRFQRFARADLDERFKKKKMKSLIPQIVQVMYLGSLSIFCVGAVILAG 328
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
S ++VSF+ SL F+I+P+Q +GKAYNE KQGEPAIERLFDLT +SKVIE+P+A+
Sbjct: 329 SSLSSSAIVSFVASLAFLIDPVQDLGKAYNELKQGEPAIERLFDLTSLESKVIERPEAIQ 388
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L+ + G+V+ C+ISFKY +NM VLD LNLHI+AGETVAL+GPSGGGK+TL KLLLRLY+
Sbjct: 389 LEKVAGEVELCDISFKYDENMLPVLDGLNLHIKAGETVALVGPSGGGKTTLIKLLLRLYE 448
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P SG I++D D+++I+L+SLR+HVGLVSQD TLFSGT+A+NIGYRDL T IDM+RVE
Sbjct: 449 PSSGSIIIDKIDIKDIKLESLRKHVGLVSQDTTLFSGTIADNIGYRDLTTGIDMKRVELA 508
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R LP+GYNT +GPRGSSLSGGQ+QRLAIARALYQ SS+LILDEATSALDS
Sbjct: 509 AKTANADEFIRNLPEGYNTGVGPRGSSLSGGQKQRLAIARALYQKSSILILDEATSALDS 568
Query: 361 RSELLVRQAVDRLLGHHTV 379
SELLVR+A++R++ HTV
Sbjct: 569 LSELLVREALERVMQDHTV 587
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462954|ref|XP_004149200.1| PREDICTED: ABC transporter B family member 29, chloroplastic-like [Cucumis sativus] gi|449522662|ref|XP_004168345.1| PREDICTED: ABC transporter B family member 29, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 266/379 (70%), Positives = 321/379 (84%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
MATQML ISPVLSLISALVIP +ALVIAYLGER +ISK + LSIA+LS+YLNEVLPA L
Sbjct: 220 MATQMLAISPVLSLISALVIPCVALVIAYLGERQHRISKMASLSIANLSSYLNEVLPAFL 279
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
FVKAN+AE CE+ RF+RLA +DL E LKK+KMKA +P VQ +YF +L +L G L+VS
Sbjct: 280 FVKANSAEFCENIRFQRLARTDLYERLKKKKMKAFVPHVVQALYFVSLSMLFVGLLVVSR 339
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
GSF S+VSF+TSL F+IEP+Q +GKAYNE K+GEPAIERLF+L +FK VIE DAV
Sbjct: 340 GSFSSSSMVSFVTSLGFLIEPVQKIGKAYNELKEGEPAIERLFELIEFKPTVIETHDAVD 399
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L+ + G++KFCN+SF Y NMPLVLD LNLHI+AGETVA +GPSGGGK+TL KLLLRLYD
Sbjct: 400 LNCLKGELKFCNVSFTYGSNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLIKLLLRLYD 459
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
PLSG IL+D+H+++ +R SLRR++GLVSQD+ LFSGTVAENIGY DL +IDMERV+
Sbjct: 460 PLSGNILIDNHNIRTVRFRSLRRNIGLVSQDMILFSGTVAENIGYYDLTKEIDMERVKEV 519
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+ ANADEF+R LP+GYNT+IGPRG +LSGGQ+QRLAIARALYQNSS+L+LDEATSALDS
Sbjct: 520 AQIANADEFIRRLPKGYNTNIGPRGLTLSGGQKQRLAIARALYQNSSILVLDEATSALDS 579
Query: 361 RSELLVRQAVDRLLGHHTV 379
SE+LVR A++RL+ +HTV
Sbjct: 580 ASEILVRHALERLMENHTV 598
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|116310346|emb|CAH67360.1| OSIGBa0134P10.6 [Oryza sativa Indica Group] gi|125548217|gb|EAY94039.1| hypothetical protein OsI_15818 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 224/379 (59%), Positives = 295/379 (77%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M QM+ I+P+LS+++A VIP M LVIA LG RLR+ISK++H+S+A L+ YLN+VLP++L
Sbjct: 269 MGHQMVTINPLLSMVAATVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLNDVLPSML 328
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
VKANN E E +RF+ L DL L K+KMKA IPQ V+ Y G L +LC GS+ VSG
Sbjct: 329 TVKANNGEGKEISRFQNLVIVDLKNNLSKKKMKAFIPQVVRTTYIGGLVVLCAGSIAVSG 388
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
FDG +SF+T+L IEPIQ GKAYNE+KQGEPA++R+FDLT+F +V +K AV
Sbjct: 389 TFFDGEGFLSFLTALALAIEPIQDFGKAYNEYKQGEPALDRIFDLTRFIPEVRDKATAVH 448
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L ++ GD+ F +++F+Y D MP +LD +NLHIR+GET+A +GPSGGGK+TLAKLLLRLY
Sbjct: 449 LKYVKGDINFHDVTFQYIDGMPPILDGVNLHIRSGETIAFVGPSGGGKTTLAKLLLRLYQ 508
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P SG IL+D+ D+++I+L LR H+ VSQD L SGT+AENI Y D M IDM +VE
Sbjct: 509 PQSGYILLDNCDIRDIQLQCLRTHIAFVSQDAMLLSGTIAENIAYGDPMGAIDMSKVESA 568
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+ ANA+EF++ LP GYN+++G +GSSLSGGQ+QRL+IARA+YQNSSVLILDEATSALD+
Sbjct: 569 AKIANAEEFIKMLPGGYNSYVGQKGSSLSGGQKQRLSIARAIYQNSSVLILDEATSALDN 628
Query: 361 RSELLVRQAVDRLLGHHTV 379
RSE+LV++A+ L+ +HTV
Sbjct: 629 RSEILVKEALTNLMANHTV 647
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357167520|ref|XP_003581203.1| PREDICTED: ABC transporter B family member 29, chloroplastic-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 223/379 (58%), Positives = 296/379 (78%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M TQM+ I+ LSL++A+VIP M +VIA LGERLR+ISK++HLS+A L+AYLN+VLP+IL
Sbjct: 215 MGTQMVAINLQLSLVAAMVIPCMCIVIANLGERLRQISKKAHLSLAMLAAYLNDVLPSIL 274
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG 120
VK NN E E RF L +L L K+ MKALIPQ V+ Y L +LC GS+ VSG
Sbjct: 275 TVKVNNGEHKEILRFHELGFGELKNNLDKKNMKALIPQAVRTTYIVGLVVLCAGSIAVSG 334
Query: 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
+FD +SF+T+L +EPIQ +GKAYNE+KQGEPA+ER+FDLT+F +V +KP A+
Sbjct: 335 TTFDAEGFLSFLTALALFVEPIQDLGKAYNEYKQGEPALERIFDLTRFIPQVRDKPSALH 394
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L + GD+KF +++F+YA MP V D +NLHIR GETVA++GPSGGGK+T+AKLLLRLY
Sbjct: 395 LKSVMGDIKFQDVTFRYAAGMPPVADGVNLHIRPGETVAIVGPSGGGKTTIAKLLLRLYH 454
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P +G I++D+HD+Q+I+L LR H+ VSQD LFSGT+AENI Y D M I+M +VE+
Sbjct: 455 PQTGYIVLDNHDIQDIQLQCLRTHIAFVSQDAMLFSGTIAENIAYGDPMGDINMRKVENA 514
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+ ANADEF++ LP+GY++++G RGSSLSGGQ+QRL+IARA+YQNSS+LILDEATSALD+
Sbjct: 515 AKIANADEFIKMLPEGYDSYVGQRGSSLSGGQKQRLSIARAIYQNSSILILDEATSALDN 574
Query: 361 RSELLVRQAVDRLLGHHTV 379
RSELL+++ + + +HTV
Sbjct: 575 RSELLLKETLTTFMTNHTV 593
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | ||||||
| TAIR|locus:2150575 | 634 | ABCB29 "ATP-binding cassette B | 0.992 | 0.597 | 0.662 | 5.6e-132 | |
| UNIPROTKB|Q7XSA8 | 682 | OJ000126_13.5 "OJ000126_13.5 p | 0.636 | 0.356 | 0.547 | 1.4e-103 | |
| UNIPROTKB|Q7NI55 | 583 | gll2329 "HlyB/MsbA family ABC | 0.989 | 0.648 | 0.374 | 1.5e-65 | |
| UNIPROTKB|A9WF95 | 619 | Caur_2878 "ABC transporter rel | 0.971 | 0.599 | 0.384 | 1e-59 | |
| UNIPROTKB|Q9KQW9 | 582 | msbA "Lipid A export ATP-bindi | 0.981 | 0.644 | 0.351 | 8.8e-57 | |
| TIGR_CMR|VC_1878 | 582 | VC_1878 "transport ATP-binding | 0.981 | 0.644 | 0.351 | 8.8e-57 | |
| UNIPROTKB|Q74AU0 | 571 | msbA "Phospholipid/lipopolysac | 0.947 | 0.633 | 0.371 | 2e-56 | |
| TIGR_CMR|GSU_2260 | 571 | GSU_2260 "ABC transporter, ATP | 0.947 | 0.633 | 0.371 | 2e-56 | |
| UNIPROTKB|Q9RRV6 | 588 | DR_2379 "ABC transporter, ATP- | 0.926 | 0.602 | 0.385 | 3.4e-54 | |
| TIGR_CMR|SPO_3005 | 643 | SPO_3005 "efflux ABC transport | 0.971 | 0.576 | 0.354 | 3.4e-54 |
| TAIR|locus:2150575 ABCB29 "ATP-binding cassette B29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1294 (460.6 bits), Expect = 5.6e-132, P = 5.6e-132
Identities = 251/379 (66%), Positives = 314/379 (82%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M M+V SP L+L+SA+VIPS+AL+IAYLG+RLRKIS+++ ++ A LS YLNEVLPAIL
Sbjct: 209 MTAHMIVASPALTLVSAMVIPSVALLIAYLGDRLRKISRKAQIASAQLSTYLNEVLPAIL 268
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFIXXXXXXXXXX 120
FVKANNAE+ ES RF+R A +DL E KK+KMK+LIPQ VQ++Y G+L I
Sbjct: 269 FVKANNAEISESVRFQRFARADLDERFKKKKMKSLIPQIVQVMYLGSLSIFCVGAVILAG 328
Query: 121 XXFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
++VSF+ SL F+I+P+Q +GKAYNE KQGEPAIERLFDLT +SKVIE+P+A+
Sbjct: 329 SSLSSSAIVSFVASLAFLIDPVQDLGKAYNELKQGEPAIERLFDLTSLESKVIERPEAIQ 388
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L+ + G+V+ C+ISFKY +NM VLD LNLHI+AGETVAL+GPSGGGK+TL KLLLRLY+
Sbjct: 389 LEKVAGEVELCDISFKYDENMLPVLDGLNLHIKAGETVALVGPSGGGKTTLIKLLLRLYE 448
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P SG I++D D+++I+L+SLR+HVGLVSQD TLFSGT+A+NIGYRDL T IDM+RVE
Sbjct: 449 PSSGSIIIDKIDIKDIKLESLRKHVGLVSQDTTLFSGTIADNIGYRDLTTGIDMKRVELA 508
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
A+TANADEF+R LP+GYNT +GPRGSSLSGGQ+QRLAIARALYQ SS+LILDEATSALDS
Sbjct: 509 AKTANADEFIRNLPEGYNTGVGPRGSSLSGGQKQRLAIARALYQKSSILILDEATSALDS 568
Query: 361 RSELLVRQAVDRLLGHHTV 379
SELLVR+A++R++ HTV
Sbjct: 569 LSELLVREALERVMQDHTV 587
|
|
| UNIPROTKB|Q7XSA8 OJ000126_13.5 "OJ000126_13.5 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 133/243 (54%), Positives = 176/243 (72%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M QM+ I+P+LS+++A VIP M LVIA LG RLR+ISK++H+S+A L+ YLN+VLP++L
Sbjct: 269 MGHQMVTINPLLSVVAATVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLNDVLPSML 328
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFIXXXXXXXXXX 120
VKANN E E +RF+ L DL L K+KMKA IPQ V+ Y G L +
Sbjct: 329 TVKANNGEGKEISRFQNLVIVDLKNNLSKKKMKAFIPQVVRTTYIGGLLVLCAGSIAVSG 388
Query: 121 XXFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
FDG +SF+T+L IEPIQ GKAYNE+KQGEPA++R+FDLT+F +V +K AV
Sbjct: 389 TFFDGEGFLSFLTALTLAIEPIQDFGKAYNEYKQGEPALDRIFDLTRFIPEVRDKATAVH 448
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L ++ GD+ F +++F+Y D MP +LD +NLHIR+GET+A +GPSGGGK+TLAKLLLRLY
Sbjct: 449 LKYVKGDINFHDVTFQYIDGMPPILDGVNLHIRSGETIAFVGPSGGGKTTLAKLLLRLYQ 508
Query: 241 PLS 243
P S
Sbjct: 509 PQS 511
|
|
| UNIPROTKB|Q7NI55 gll2329 "HlyB/MsbA family ABC transporter" [Gloeobacter violaceus PCC 7421 (taxid:251221)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 143/382 (37%), Positives = 224/382 (58%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
+ + ++ ++ L+L++ +V P + + + G +L +S+ S IA LS+ L E+ AI
Sbjct: 150 VVSYLIYLNWQLTLVTLVVSPLIGWLFGWFGNKLADLSRTSQEQIADLSSRLYEIFSAIR 209
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIY-FGALFIXXXXXXXXX 119
++A AE E RF L+ + + ++KA+ + L+ G L +
Sbjct: 210 IIRAFAAEDYEQRRFGELSDENRLARFRTEQIKAIQYPVIGLMQALGVLLVFWVGAWQIS 269
Query: 120 XXXFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAV 179
SF T + +++P++ + + NE +Q + +R+F+L K V++ PDAV
Sbjct: 270 AGNLPAFEFASFATGIGLLLDPVRMITENLNELRQAGASADRVFELFDLKPTVLQAPDAV 329
Query: 180 SLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239
L + G ++F NI F YAD+ P VL+ +NL + GE VAL+GPSG GKS+L LL R Y
Sbjct: 330 PLSPVKGRIEFSNIDFSYADDRP-VLNNVNLRVEPGEVVALVGPSGSGKSSLVNLLPRFY 388
Query: 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYR--DLMTKIDMERV 297
DP G + +D DV+ + SLRR +G+V Q+ LFSGT+A+NI Y + K ++R+
Sbjct: 389 DPQQGTVRIDGTDVRAVTFKSLRRQIGIVPQETLLFSGTIAQNIAYGCDEADIKGMLDRI 448
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
A+ ANA EF++ LP GY+ + G LSGGQRQR+AIARA+ + +LILDEATSA
Sbjct: 449 VRAAKIANAHEFIQDLPGGYDAKVSEGGRGLSGGQRQRIAIARAVLLDPKILILDEATSA 508
Query: 358 LDSRSELLVRQAVDRLLGHHTV 379
LD+ SE LV++A++RL+ TV
Sbjct: 509 LDNESEALVQEALNRLMQDRTV 530
|
|
| UNIPROTKB|A9WF95 Caur_2878 "ABC transporter related" [Chloroflexus aurantiacus J-10-fl (taxid:324602)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 147/382 (38%), Positives = 219/382 (57%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
MLV+S LS ++ +++P++ L+ + G LR+IS +A ++ L E + + V++
Sbjct: 182 MLVVSWQLSGLALILVPTLVLIGVFFGRWLRQISTAVQDRLADATSILEETVAGVRVVRS 241
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALF-IXXXXXXXXXXXXF 123
E E RFR + LK +++A+ + L + AL I
Sbjct: 242 FRREDYEITRFRAAVEATFATALKLARIRAIFQPAMSLAVWMALIGILAIGGYLVSTGVL 301
Query: 124 DGCSLVSFITSLVFMIEPIQGV-GKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLD 182
SL+SF+ V M GV + + ++ A R+F+L + V + PDA+ L
Sbjct: 302 TTGSLISFLFYAV-MAAGSMGVFASLFAQLQEALGATTRVFELLDQQPLVADAPDAIPLP 360
Query: 183 HINGDVKFCNISFKY---ADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236
+ G ++F +SF Y N P+VL +L I AGE VAL+GPSG GKST+A L+
Sbjct: 361 PVEGRIEFREVSFAYQSATSNGSPAPVVLRDFSLTIEAGEMVALVGPSGAGKSTIASLIP 420
Query: 237 RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296
R YD +G +L+D +DV+ +++ SLR +G+V Q+ LFSG+V +NI Y L D E
Sbjct: 421 RFYDVSAGSVLIDGYDVRRVQIQSLRDQIGIVLQETQLFSGSVRDNIRYGRLEAT-D-EE 478
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
+E AR ANA EF+ LP GY+T +G RG LSGGQRQR+AIARA+ +N +LILDEATS
Sbjct: 479 IEAAARMANAHEFICQLPDGYDTPVGERGVRLSGGQRQRIAIARAILKNPRILILDEATS 538
Query: 357 ALDSRSELLVRQAVDRLLGHHT 378
+LDS SE LV++A++RL+ T
Sbjct: 539 SLDSESERLVQEALERLMAGRT 560
|
|
| UNIPROTKB|Q9KQW9 msbA "Lipid A export ATP-binding/permease protein MsbA" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 134/381 (35%), Positives = 216/381 (56%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
+ T M S LSL+ +V P +A I+++ +R RKIS+ ++ +++ ++L
Sbjct: 156 LLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHK 215
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALF--IXXXXXXXX 118
V + + E RF ++++S + +K +++ +Q+I ALF +
Sbjct: 216 VVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSI 275
Query: 119 XXXXFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDA 178
G V F +++ ++ P++ + +EF++G A + LF L +++
Sbjct: 276 RAELTPGTFTVVF-SAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE--RDNGK 332
Query: 179 VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238
+ +NG+V +++F Y L ++ I G+TVAL+G SG GKST+A L R
Sbjct: 333 YEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392
Query: 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVE 298
YD SG I +D HDV++ +L +LRRH LVSQ++ LF+ T+A NI Y + E++E
Sbjct: 393 YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYA-AEGEYTREQIE 451
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
AR A+A EF+ +PQG +T IG G+SLSGGQRQR+AIARAL +++ VLILDEATSAL
Sbjct: 452 QAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSAL 511
Query: 359 DSRSELLVRQAVDRLLGHHTV 379
D+ SE ++ A+D L + TV
Sbjct: 512 DTESERAIQAALDELQKNKTV 532
|
|
| TIGR_CMR|VC_1878 VC_1878 "transport ATP-binding protein MsbA" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 134/381 (35%), Positives = 216/381 (56%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
+ T M S LSL+ +V P +A I+++ +R RKIS+ ++ +++ ++L
Sbjct: 156 LLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHK 215
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALF--IXXXXXXXX 118
V + + E RF ++++S + +K +++ +Q+I ALF +
Sbjct: 216 VVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSI 275
Query: 119 XXXXFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDA 178
G V F +++ ++ P++ + +EF++G A + LF L +++
Sbjct: 276 RAELTPGTFTVVF-SAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE--RDNGK 332
Query: 179 VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238
+ +NG+V +++F Y L ++ I G+TVAL+G SG GKST+A L R
Sbjct: 333 YEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392
Query: 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVE 298
YD SG I +D HDV++ +L +LRRH LVSQ++ LF+ T+A NI Y + E++E
Sbjct: 393 YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYA-AEGEYTREQIE 451
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
AR A+A EF+ +PQG +T IG G+SLSGGQRQR+AIARAL +++ VLILDEATSAL
Sbjct: 452 QAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSAL 511
Query: 359 DSRSELLVRQAVDRLLGHHTV 379
D+ SE ++ A+D L + TV
Sbjct: 512 DTESERAIQAALDELQKNKTV 532
|
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| UNIPROTKB|Q74AU0 msbA "Phospholipid/lipopolysaccharide-flipping ABC transporter MsbA" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 137/369 (37%), Positives = 210/369 (56%)
Query: 12 LSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCE 71
L+LI+ +V+P A+ +G+R++ ++KQS + +++ L E I VKA E
Sbjct: 158 LALITFIVLPLTAVPAQKIGKRIKNLAKQSLGQMGEITSILQETFSGIKVVKAFRQEKSV 217
Query: 72 SARFRRLAHSDLCELLKKR-KMKALIPQTVQLIY-FGALFIXXXXXXXXXXXXFDGCSLV 129
RF R + L L+K K ++L +++I FG +
Sbjct: 218 VDRFSR-TNLGLYRYLRKSIKYESLHTPIMEIITSFGVAGVIWFGGSQVMDGKMTAPEFF 276
Query: 130 SFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVK 189
SF+T++V + PI+ V AYN +Q A ER+F++ + + + PD V + G V+
Sbjct: 277 SFLTAMVMLYGPIKKVLSAYNTVQQAMGAAERVFEVIDHPADIQDPPDPVEPGMVRGSVE 336
Query: 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249
N+SF+Y D VL ++ GE VAL+GPSG GK+T+ L+ R YD G +L+D
Sbjct: 337 LRNVSFRYDDEE--VLRDVSFTAGRGEVVALVGPSGAGKTTVMSLIPRFYDVTGGAVLID 394
Query: 250 DHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEF 309
DV+ +RLD L + LV Q+ LF+ T+A NI + +E VE AR+A A +F
Sbjct: 395 GIDVRRLRLDDLLCQIALVDQETILFNETIANNIRLGN--PDATLEEVERAARSAFAHDF 452
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
+ +P+GY+T+IG RG LSGGQRQRL IARA+ +N+ +L+LDEATSALD+ SE +V+QA
Sbjct: 453 IMEMPEGYDTNIGDRGVRLSGGQRQRLCIARAILKNAPILLLDEATSALDTESEHMVQQA 512
Query: 370 VDRLLGHHT 378
+ L+ + T
Sbjct: 513 LTNLMKNRT 521
|
|
| TIGR_CMR|GSU_2260 GSU_2260 "ABC transporter, ATP-binding protein, MsbA family" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 137/369 (37%), Positives = 210/369 (56%)
Query: 12 LSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCE 71
L+LI+ +V+P A+ +G+R++ ++KQS + +++ L E I VKA E
Sbjct: 158 LALITFIVLPLTAVPAQKIGKRIKNLAKQSLGQMGEITSILQETFSGIKVVKAFRQEKSV 217
Query: 72 SARFRRLAHSDLCELLKKR-KMKALIPQTVQLIY-FGALFIXXXXXXXXXXXXFDGCSLV 129
RF R + L L+K K ++L +++I FG +
Sbjct: 218 VDRFSR-TNLGLYRYLRKSIKYESLHTPIMEIITSFGVAGVIWFGGSQVMDGKMTAPEFF 276
Query: 130 SFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVK 189
SF+T++V + PI+ V AYN +Q A ER+F++ + + + PD V + G V+
Sbjct: 277 SFLTAMVMLYGPIKKVLSAYNTVQQAMGAAERVFEVIDHPADIQDPPDPVEPGMVRGSVE 336
Query: 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249
N+SF+Y D VL ++ GE VAL+GPSG GK+T+ L+ R YD G +L+D
Sbjct: 337 LRNVSFRYDDEE--VLRDVSFTAGRGEVVALVGPSGAGKTTVMSLIPRFYDVTGGAVLID 394
Query: 250 DHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEF 309
DV+ +RLD L + LV Q+ LF+ T+A NI + +E VE AR+A A +F
Sbjct: 395 GIDVRRLRLDDLLCQIALVDQETILFNETIANNIRLGN--PDATLEEVERAARSAFAHDF 452
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
+ +P+GY+T+IG RG LSGGQRQRL IARA+ +N+ +L+LDEATSALD+ SE +V+QA
Sbjct: 453 IMEMPEGYDTNIGDRGVRLSGGQRQRLCIARAILKNAPILLLDEATSALDTESEHMVQQA 512
Query: 370 VDRLLGHHT 378
+ L+ + T
Sbjct: 513 LTNLMKNRT 521
|
|
| UNIPROTKB|Q9RRV6 DR_2379 "ABC transporter, ATP-binding protein, MsbA family" [Deinococcus radiodurans R1 (taxid:243230)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 146/379 (38%), Positives = 210/379 (55%)
Query: 12 LSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCE 71
L+LI +P MA Y +L + QS I ++A + + L I V++ E E
Sbjct: 173 LTLILLAFLPFMAAYALYFNVQLNRALLQSRQRIGEVNAQVEDSLAGIRVVQSFTGEGTE 232
Query: 72 SARFRRLAHSDL----------CELLKKRKMKALIP-QTVQLIYFGALFIXXXXXXXXXX 120
+ RF A +DL EL + M A T+ ++ FG I
Sbjct: 233 ARRFG--AANDLFVEGRRGEYRAELYFYQGMTAFTGLMTIAVLMFGGWAILQGGLR---- 286
Query: 121 XXFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVS 180
DG LV+++ + ++EPI+ + ++G +R ++ +++ P A
Sbjct: 287 --IDG--LVTYLMCVGILLEPIRRLVNLARVLQEGVTGFQRFREMMAVTPDIVDAPGAAE 342
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L ++ G+V+F +SF Y+ + P VL LNL IRAGE VAL+G SG GKSTL L+ R YD
Sbjct: 343 LQNVRGEVEFQGVSFGYSPDAPPVLRDLNLKIRAGEFVALVGASGVGKSTLCALIPRFYD 402
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEH 299
+G +LVD HDV + L SLRR VG+V QD+ LFSGTV ENI Y R T + E ++
Sbjct: 403 VSAGQVLVDGHDVCGVTLASLRRSVGVVQQDVYLFSGTVMENIRYGRPGAT--EAEAMD- 459
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
AR A A +F+ LPQGY+T IG RG LSGGQ+QRL+IAR ++ +LI DEATS+LD
Sbjct: 460 AARQAGAHDFITRLPQGYHTDIGQRGVKLSGGQKQRLSIARVFLKDPPILIFDEATSSLD 519
Query: 360 SRSELLVRQAVDRLLGHHT 378
+ SE LV+++++RL T
Sbjct: 520 NESERLVQESLERLARRRT 538
|
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| TIGR_CMR|SPO_3005 SPO_3005 "efflux ABC transporter, permease/ATP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 134/378 (35%), Positives = 216/378 (57%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
ML+ S L+ + L++P++ + I LG RLR IS+++ IA+ S +E L A+ V++
Sbjct: 213 MLLTSAKLTGLVLLLVPAVLVPILVLGRRLRAISRENQDWIAASSGNASEALSAVQTVQS 272
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQ-LIYFGALFIXXXXXXXXXXXXF 123
E A F + + ++ +A++ V L++ G + +
Sbjct: 273 YTNETASRAAFAEVTETAYDVSRRRIATRAVLTVIVIFLVFSGIVGVLWMGANDVRAGVM 332
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIE--KPDAVSL 181
+L+ F+ V M + + + ++E ++ A ERL +L V + +P A++L
Sbjct: 333 TEGTLIQFVIYSVIMAGAVAALSEIWSELQRAAGATERLVELLNAADSVNDPVQPAALAL 392
Query: 182 DHINGDVKFCNISFKY-ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
+ G++ F N++F+Y A + LD ++L +R GETVA +GPSG GK+T+ +L+ R YD
Sbjct: 393 P-VQGEIAFDNVTFRYPARPDQVALDGMSLTVRPGETVAFVGPSGAGKTTVIQLIQRFYD 451
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
P SG +L+D D+ + RRH+ LV QD +F+ + ENI + + D E VE
Sbjct: 452 PQSGRVLLDGQDLTTLSRADFRRHIALVPQDPVIFAASARENIRF-GRPSASDAE-VEEA 509
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
AR A A EF+ LP+GY++ +G RG LSGGQ+QR+AIARA+ +++ VL+LDEATSALD+
Sbjct: 510 ARAAAAHEFIAALPEGYDSFVGERGVMLSGGQKQRIAIARAILRDAPVLLLDEATSALDA 569
Query: 361 RSELLVRQAVDRLLGHHT 378
SE V+QAV+RL T
Sbjct: 570 ESERAVQQAVERLSADRT 587
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.VI.655.1 | ABC transporter family, retinal flippase subfamily (570 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.00130849 | multidrug/pheromone exporter, MDR family, ABC transporter family (100 aa) | • | 0.485 | |||||||
 | fgenesh4_pg.C_scaffold_10910000001 | hypothetical protein (268 aa) | • | 0.454 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 382 | |||
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-101 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-93 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-90 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-89 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-88 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-80 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-72 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 9e-72 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-71 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-71 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-70 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 9e-68 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-67 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-65 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-64 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 8e-62 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-60 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-58 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 6e-58 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-57 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-57 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-53 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-52 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-51 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-51 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-48 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 6e-48 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-47 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-44 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-43 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 6e-41 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-40 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-39 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 7e-38 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-37 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-37 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-37 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-36 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-34 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-34 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-34 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-34 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 5e-34 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-34 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-34 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-33 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-33 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-33 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-32 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-32 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-32 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-32 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-32 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 8e-32 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-31 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-31 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-31 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-31 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-31 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 5e-31 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-31 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-30 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-30 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-30 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-30 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-30 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-29 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-29 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-29 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-29 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-29 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 6e-29 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-28 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-28 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-28 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-28 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-28 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-28 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-27 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-27 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-27 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-27 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-27 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 6e-27 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-27 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-26 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-26 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-26 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-26 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-25 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-25 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-25 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-25 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-25 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 4e-25 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-25 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-25 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-25 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 8e-25 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-24 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-24 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-24 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-24 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-24 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-24 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-24 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-24 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-24 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-24 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-24 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-23 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-23 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-23 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-23 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 7e-23 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-23 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 8e-23 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-22 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-22 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-22 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-22 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-22 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 5e-22 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 7e-22 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 8e-22 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-22 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 9e-22 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-21 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-21 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-21 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-21 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-21 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-21 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-21 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-21 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 5e-21 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 6e-21 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 6e-21 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-21 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 9e-21 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-20 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-20 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-20 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-20 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-20 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-20 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-20 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-20 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-20 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-20 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-20 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-20 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-20 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 7e-20 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 8e-20 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 8e-20 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-19 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-19 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-19 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-19 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-19 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-19 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-19 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-19 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-19 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-19 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-19 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-19 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 4e-19 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 5e-19 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-19 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-19 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 6e-19 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 8e-19 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-18 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-18 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-18 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-18 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-18 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-18 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-18 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 5e-18 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 6e-18 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 8e-18 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 9e-18 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 9e-18 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-17 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-17 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-17 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-17 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-17 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-17 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-17 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-17 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-17 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-17 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-17 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-17 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-17 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-17 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-17 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-17 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-17 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-17 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-17 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-17 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 5e-17 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 7e-17 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 8e-17 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-16 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-16 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-16 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-16 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-16 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-16 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-16 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-16 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-16 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-16 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 5e-16 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 5e-16 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 5e-16 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 7e-16 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-16 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 9e-16 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-15 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-15 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-15 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-15 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-15 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-15 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-15 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-15 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-15 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 5e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-15 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 6e-15 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 8e-15 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-14 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-14 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-14 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-14 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-14 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-14 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-14 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 7e-14 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 9e-14 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-13 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-13 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-13 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-13 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-13 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-13 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 6e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 7e-13 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 7e-13 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-13 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-13 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-13 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 8e-13 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 8e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 9e-13 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 9e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-12 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-12 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-12 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-12 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-12 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 7e-12 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 9e-12 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-11 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-11 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-11 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 4e-11 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-11 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-11 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 8e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-10 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-10 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-10 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-10 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-10 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 9e-10 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-09 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-09 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-09 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-09 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-09 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 4e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 4e-09 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 6e-09 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 1e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-08 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-08 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-08 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-08 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 7e-08 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 3e-07 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 6e-07 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 6e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 8e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 8e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 8e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 8e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 8e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 8e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-05 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 7e-05 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 9e-05 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 1e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 3e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 5e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 6e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 9e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.001 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.002 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.002 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.002 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.002 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.002 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.002 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 0.002 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 0.002 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.003 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.004 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.004 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 310 bits (796), Expect = e-101
Identities = 159/376 (42%), Positives = 222/376 (59%), Gaps = 6/376 (1%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
+ +S L+LI L++P +ALV++ L + RK+S++ ++ L+A L E L I +KA
Sbjct: 147 LFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKA 206
Query: 65 NNAEMCESARFRRLAHSDLCELLKK-RKMKALIPQTVQLIYFGALFILCGGSLLVSGGSF 123
AE E RF L+ R L P + L G + +L G LV GS
Sbjct: 207 FGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSL 266
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
+L +FI L+ ++ PI +G+ + ++ A ERLF+L + +V + PD L
Sbjct: 267 TVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKD 324
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
G ++F N+SF Y VL ++ I GE VA++GPSG GKSTL KLLLRLYDP S
Sbjct: 325 TIGSIEFENVSFSY-PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS 383
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G IL+D D+++I LDSLR+ +G+VSQD LFSGT+ ENI E +E +
Sbjct: 384 GEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGR--PDATDEEIEEALKL 441
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
ANA EF+ LP GY+T +G RG +LSGGQRQRLAIARAL +N +LILDEATSALD+ +E
Sbjct: 442 ANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETE 501
Query: 364 LLVRQAVDRLLGHHTV 379
L++ A+ +LL T
Sbjct: 502 ALIQDALKKLLKGRTT 517
|
Length = 567 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 288 bits (740), Expect = 8e-93
Identities = 143/376 (38%), Positives = 211/376 (56%), Gaps = 6/376 (1%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
+L S L+LI +++P +++++ + +RLR+ISK+ S+ ++ E L VK
Sbjct: 149 LLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKL 208
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGAL-FILCGGSLLVSGGSF 123
+ E+ RF +++ + +K ++ QLI AL +L GS
Sbjct: 209 FGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSL 268
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDA-VSLD 182
+FIT+++ +I P++ + ++G A E LF L EK +++
Sbjct: 269 TAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLL---DSPPEKDTGTRAIE 325
Query: 183 HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242
GDV+F N++F+Y LD ++L I GETVAL+G SG GKSTL L+ R Y+P
Sbjct: 326 RARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD 385
Query: 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTAR 302
SG IL+D HD+ + L SLRR V LVSQD+ LF+ T+A NI Y + D +E
Sbjct: 386 SGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGR-TEQADRAEIERALA 444
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
A A +FV LP G +T IG G LSGGQRQRLAIARAL +++ +LILDEATSALD+ S
Sbjct: 445 AAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504
Query: 363 ELLVRQAVDRLLGHHT 378
E LV+ A++RL+ T
Sbjct: 505 ERLVQAALERLMQGRT 520
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 282 bits (724), Expect = 2e-90
Identities = 150/380 (39%), Positives = 220/380 (57%), Gaps = 7/380 (1%)
Query: 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFV 62
M + SP L+ + L +P + L I G R+RK+S++S IA +Y E L AI V
Sbjct: 151 IMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTV 210
Query: 63 KANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGAL-FILCGGSLLVSGG 121
+A E E +RF ++ + +AL+ V ++ FGA+ +L G+ V G
Sbjct: 211 QAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAG 270
Query: 122 SFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL 181
+L F+ V + I + + + E ++ A ERL +L + + + +L
Sbjct: 271 KMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTL 330
Query: 182 DH-INGDVKFCNISFKY-ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239
+ G+++F ++F Y A LD LNL +R GETVAL+GPSG GKSTL +LLLR Y
Sbjct: 331 PVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390
Query: 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVE 298
DP SG IL+D D++ + LR + LV QD LF+ +V ENI Y R T E VE
Sbjct: 391 DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATD---EEVE 447
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
AR A+A EF+ LP+GY+T++G RG +LSGGQRQR+AIARA+ +++ +L+LDEATSAL
Sbjct: 448 AAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSAL 507
Query: 359 DSRSELLVRQAVDRLLGHHT 378
D+ SE LV+QA++ L+ T
Sbjct: 508 DAESEQLVQQALETLMKGRT 527
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 283 bits (726), Expect = 2e-89
Identities = 142/380 (37%), Positives = 207/380 (54%), Gaps = 11/380 (2%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M + S L+LI IP L+ LR+ +++ A ++L E + I VKA
Sbjct: 288 MFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKA 347
Query: 65 NNAEMCESARFRRLAHSDLCEL----LKKRKMKALIPQTVQLIY-FGALFILCGGSLLVS 119
AE RFR + L + K K+ ++ L+ ++ IL G++LV
Sbjct: 348 LAAE----PRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVL 403
Query: 120 GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAV 179
G LV+F + I PI + + + +F+Q + A+ERL D+ + +
Sbjct: 404 EGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLI 463
Query: 180 SLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239
L + G+++F N+SF+Y + P VL+ L+L I GE VA++G SG GKSTL KLLL LY
Sbjct: 464 HLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523
Query: 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEH 299
P G IL+D D+ +I L SLRR VG V QD LFSG++ ENI + E +
Sbjct: 524 KPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENI--ALGNPEATDEEIIE 581
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A+ A A EF+ LP GY+T +G G++LSGGQRQRLA+ARAL +L+LDEATSALD
Sbjct: 582 AAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALD 641
Query: 360 SRSELLVRQAVDRLLGHHTV 379
+E ++ Q + ++L TV
Sbjct: 642 PETEAIILQNLLQILQGRTV 661
|
Length = 709 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 265 bits (680), Expect = 4e-88
Identities = 110/192 (57%), Positives = 138/192 (71%), Gaps = 2/192 (1%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
V+F N++F+Y + P VL ++L I AGETVAL+GPSG GKSTL L+ R YD SG IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
+D HDV++ L SLRR +GLVSQD+ LF+ TVAENI Y E VE AR ANA
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGR--PGATREEVEEAARAANAH 118
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367
EF+ LP+GY+T IG RG LSGGQRQR+AIARAL ++ +LILDEATSALD+ SE LV+
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178
Query: 368 QAVDRLLGHHTV 379
A++RL+ + T
Sbjct: 179 AALERLMKNRTT 190
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 3e-80
Identities = 99/194 (51%), Positives = 134/194 (69%), Gaps = 5/194 (2%)
Query: 188 VKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
++F N+SF+Y ++P +L L+L I G+TVAL+G SG GKST+ LL R YDP SG
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
IL+D D++++ L LR +GLVSQ+ LF GT+AENI Y E VE A+ AN
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGK--PDATDEEVEEAAKKAN 117
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+F+ +LP GY+T +G RGS LSGGQ+QR+AIARAL +N +L+LDEATSALD+ SE L
Sbjct: 118 IHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL 177
Query: 366 VRQAVDRLLGHHTV 379
V++A+DR + T
Sbjct: 178 VQEALDRAMKGRTT 191
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 236 bits (605), Expect = 1e-72
Identities = 134/389 (34%), Positives = 215/389 (55%), Gaps = 30/389 (7%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M S LSLI ++ P +++ I + +R R ISK ++ ++ ++L V
Sbjct: 160 MFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLI 219
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQT-----VQLIYFGAL-FILCGGSL-- 116
+ E+ RF ++++ ++++ MK + + +QLI AL F+L S
Sbjct: 220 FGGQEVETKRFDKVSNR-----MRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPS 274
Query: 117 ---LVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVI 173
++ G+ V F +S++ ++ P++ + +F++G A + LF + +
Sbjct: 275 VMDTLTAGTIT----VVF-SSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQ--- 326
Query: 174 EKPDAV-SLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLA 232
EK + ++ GD++F N++F Y L +N I AG+TVAL+G SG GKST+A
Sbjct: 327 EKDEGKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIA 386
Query: 233 KLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY--RDLMT 290
LL R YD G IL+D HD+++ L SLR V LVSQ++ LF+ T+A NI Y + +
Sbjct: 387 NLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYS 446
Query: 291 KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350
+ E++E AR A A +F+ + G +T IG G LSGGQRQR+AIARAL ++S +LI
Sbjct: 447 R---EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILI 503
Query: 351 LDEATSALDSRSELLVRQAVDRLLGHHTV 379
LDEATSALD+ SE ++ A+D L + T
Sbjct: 504 LDEATSALDTESERAIQAALDELQKNRTS 532
|
Length = 582 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 223 bits (571), Expect = 9e-72
Identities = 87/194 (44%), Positives = 128/194 (65%), Gaps = 3/194 (1%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
G+++F N++F Y + P VL +N I+ GETVA++GP+G GK+TL LL+R YDP G
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
IL+D D+++I SLR +G+V QD LFSGT+ ENI E V A+ A
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRP--NATDEEVIEAAKEAG 117
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
A +F+ LP GY+T +G G +LS G+RQ LAIARA+ ++ +LILDEATS +D+ +E L
Sbjct: 118 AHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKL 177
Query: 366 VRQAVDRLLGHHTV 379
+++A+++L+ T
Sbjct: 178 IQEALEKLMKGRTS 191
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 236 bits (603), Expect = 2e-71
Identities = 134/376 (35%), Positives = 202/376 (53%), Gaps = 4/376 (1%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M SP L+ + + AL+ ++G LRK + A+ +++L E + I +KA
Sbjct: 273 MFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKA 332
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSF 123
E R+ R + + + + + Q ++LI +L G+ LV GG+
Sbjct: 333 TATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGAL 392
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
LV+F + +P+ + + + +F+Q A+ERL D+ ++ +L
Sbjct: 393 SPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP-RSAGLAALPE 451
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
+ G + F NI F+YA + P VL LNL I+ GE + ++GPSG GKSTL KLL RLY P
Sbjct: 452 LRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G +LVD D+ LRR +G+V Q+ LFS ++ +NI + E V H A+
Sbjct: 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN--PGAPFEHVIHAAKL 569
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
A A +F+ LPQGYNT +G +G++LSGGQRQR+AIARAL N +LI DEATSALD SE
Sbjct: 570 AGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629
Query: 364 LLVRQAVDRLLGHHTV 379
L+ + + + TV
Sbjct: 630 ALIMRNMREICRGRTV 645
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 2e-71
Identities = 132/371 (35%), Positives = 199/371 (53%), Gaps = 15/371 (4%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
ML +SP L++++ + +P + L G+R + +S++ ++A + E L + V++
Sbjct: 296 MLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRS 355
Query: 65 NNAEMCESARFR-RLAHSDLCELLKKRKMKALIPQTVQLIYFGALFIL----CGGSLLVS 119
AE E++RF+ L L KRK A G L + GG L+++
Sbjct: 356 FAAEEGEASRFKEALEE---TLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLT 412
Query: 120 GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAV 179
G G +LVSF+ + E ++ + Y+ Q A E++F+ K I +
Sbjct: 413 GKVSSG-NLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPN-IPLTGTL 470
Query: 180 SLDHINGDVKFCNISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237
+ ++ G ++F ++SF Y N P VL L + GE VAL+GPSG GKST+A LL
Sbjct: 471 APLNLEGLIEFQDVSFSYP-NRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQN 529
Query: 238 LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERV 297
LY P G +L+D + L R V LV Q+ LFSG+V ENI Y +T E +
Sbjct: 530 LYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYG--LTDTPDEEI 587
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
A+ ANA +F+ P GY+T +G +GS LSGGQ+QR+AIARAL + VLILDEATSA
Sbjct: 588 MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSA 647
Query: 358 LDSRSELLVRQ 368
LD+ E L+++
Sbjct: 648 LDAECEQLLQE 658
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 2e-70
Identities = 83/193 (43%), Positives = 122/193 (63%), Gaps = 5/193 (2%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N++F Y P VL ++ I AG+ VA++GPSG GKST+ +LL R YD SG IL
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEHTARTANA 306
+D D++ + LDSLRR +G+V QD LF+ T+ NI Y R T ++ A+ A
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEA---AKAAQI 116
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+ + P GY+T +G RG LSGG++QR+AIARA+ +N +L+LDEATSALD+ +E +
Sbjct: 117 HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176
Query: 367 RQAVDRLLGHHTV 379
+ A+ + T
Sbjct: 177 QAALRDVSKGRTT 189
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 9e-68
Identities = 130/398 (32%), Positives = 194/398 (48%), Gaps = 47/398 (11%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
+ +I L + + IP + L L L +++++S A +A L E L + +KA
Sbjct: 280 IAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKA 339
Query: 65 NNAEMCESARFRR--------LAHSDLCELLKKRKMKAL------IPQTVQ------LIY 104
NAE RF+R LA S L K + L Q +Q ++
Sbjct: 340 LNAE----GRFQRRWEQTVAALARSGL-------KSRFLSNLATNFAQFIQQLVSVAIVV 388
Query: 105 FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFD 164
G I G ++ G C ++S + P+ + ++Q + A++ L
Sbjct: 389 VGVYLISDG---ELTMGGLIACVMLS-----GRALAPLGQLAGLLTRYQQAKTALQSL-- 438
Query: 165 LTKFKSKVIEKPDA---VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALI 221
+ +E+P+ + + G+++F N+SF Y LD ++L IR GE VA+I
Sbjct: 439 -DELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAII 497
Query: 222 GPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281
G G GKSTL KLLL LY P G +L+D D++ I LRR++G V QD LF GT+ +
Sbjct: 498 GRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRD 557
Query: 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341
NI D E + A A EFVR P G + IG RG SLSGGQRQ +A+ARA
Sbjct: 558 NIALGAPY--ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARA 615
Query: 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTV 379
L ++ +L+LDE TSA+D+RSE + + R L T+
Sbjct: 616 LLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTL 653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 2e-67
Identities = 83/192 (43%), Positives = 109/192 (56%), Gaps = 44/192 (22%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N+SF Y VL ++L I+ GE VA++GPSG GKSTL KLLLRLYDP SG IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
+D D++++ L+SLR+++ V QD LFSGT+ ENI
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367
LSGGQRQR+AIARAL ++ +LILDEATSALD +E L+
Sbjct: 97 --------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALIL 136
Query: 368 QAVDRLLGHHTV 379
+A+ L TV
Sbjct: 137 EALRALAKGKTV 148
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 205 bits (525), Expect = 5e-65
Identities = 88/194 (45%), Positives = 121/194 (62%), Gaps = 2/194 (1%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
G ++F N+SF Y + LD ++L IRAGE VA+IG G GKSTL KLL LY P SG
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
+L+D D++ + LRR++G V QD+TLF GT+ +NI + D ER+ A A
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAG 118
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+FV P G + IG RG LSGGQRQ +A+ARAL + +L+LDE TSA+D SE
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 366 VRQAVDRLLGHHTV 379
+++ + +LLG T+
Sbjct: 179 LKERLRQLLGDKTL 192
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 2e-64
Identities = 86/192 (44%), Positives = 123/192 (64%), Gaps = 2/192 (1%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ F ++ F+Y + P++LD ++L I+ GE V ++G SG GKSTL KL+ R Y P +G +L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
VD HD+ LRR VG+V Q+ LF+ ++ +NI D + MERV A+ A A
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALAD--PGMSMERVIEAAKLAGAH 118
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367
+F+ LP+GY+T +G +G+ LSGGQRQR+AIARAL N +LI DEATSALD SE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 368 QAVDRLLGHHTV 379
+ + + TV
Sbjct: 179 RNMHDICAGRTV 190
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 8e-62
Identities = 98/241 (40%), Positives = 148/241 (61%), Gaps = 8/241 (3%)
Query: 141 PIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL-DHINGDVKFCNISFKYAD 199
P+ +G +Y E +Q +E++FDL +++V + PDA L G V F N+SF Y
Sbjct: 215 PLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP 274
Query: 200 NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD 259
P++ ++ I G+TVA++G SG GKST+ +LL R YD SG I +D D++++
Sbjct: 275 RRPILNG-ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQ 333
Query: 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM--ERVEHTARTANADEFVRTLPQGY 317
SLRR +G+V QD LF+ T+A NI Y + D E V A A +F+++LP+GY
Sbjct: 334 SLRRAIGIVPQDTVLFNDTIAYNIKY----GRPDATAEEVGAAAEAAQIHDFIQSLPEGY 389
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377
+T +G RG LSGG++QR+AIAR + +N +LILDEATSALD+ +E ++ A+ +
Sbjct: 390 DTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGR 449
Query: 378 T 378
T
Sbjct: 450 T 450
|
Length = 497 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 1e-60
Identities = 106/268 (39%), Positives = 156/268 (58%), Gaps = 7/268 (2%)
Query: 108 LFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTK 167
L IL G+ LV G +V+F+ +I + V N+ P +E F++
Sbjct: 255 LAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVED 314
Query: 168 FKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGG 227
V + P A+ L + G V+F ++SF Y DN ++ ++ + G+TVA++GP+G G
Sbjct: 315 AVPDVRDPPGAIDLGRVKGAVEFDDVSFSY-DNSRQGVEDVSFEAKPGQTVAIVGPTGAG 373
Query: 228 KSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI--GY 285
KSTL LL R++DP SG IL+D D++ + SLRR++ +V QD LF+ ++ +NI G
Sbjct: 374 KSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 286 RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345
D T +M A A A +F+ P GY+T +G RG LSGG+RQRLAIARAL ++
Sbjct: 434 PD-ATDEEMRA---AAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489
Query: 346 SSVLILDEATSALDSRSELLVRQAVDRL 373
+LILDEATSALD +E V+ A+D L
Sbjct: 490 PPILILDEATSALDVETEAKVKAALDEL 517
|
Length = 588 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 1e-58
Identities = 88/200 (44%), Positives = 118/200 (59%), Gaps = 5/200 (2%)
Query: 182 DHINGDVKFCNISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239
DH+ G VKF N++F Y P LVL ++ + GE AL+GPSG GKST+ LL Y
Sbjct: 6 DHLKGIVKFQNVTFAYP-TRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64
Query: 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEH 299
P G +L+D + L V LV Q+ LF+ ++ +NI Y + E V+
Sbjct: 65 QPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYG--LQSCSFECVKE 122
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A+ A+A F+ L GY+T +G +GS LSGGQ+QR+AIARAL +N VLILDEATSALD
Sbjct: 123 AAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD 182
Query: 360 SRSELLVRQAVDRLLGHHTV 379
+ SE V+QA+ TV
Sbjct: 183 AESEQQVQQALYDWPERRTV 202
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 6e-58
Identities = 115/387 (29%), Positives = 176/387 (45%), Gaps = 36/387 (9%)
Query: 8 ISPVLSLISALVIPS-MALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANN 66
IS ++ L++A +IP M L+ G + +++ +++ LS + + L + +K
Sbjct: 145 ISGLILLLTAPLIPIFMILI----GWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFG 200
Query: 67 AEMCESARFRRLAHSDLCELLKKRKMKAL---IPQTVQLIYFGALFI-----LCGGSLLV 118
++A RR + E ++R M+ L + L F L + G LL
Sbjct: 201 RAKAQAAAIRRSS-----EEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLA 255
Query: 119 SGGSFDGCSLVSFITSLVFMI------EPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKV 172
+ T L ++ P++ +G Y+ G A E LF + +
Sbjct: 256 GD--------LDLATGLFVLLLAPEFYLPLRQLGAQYHARADGVAAAEALFAVLDAAPR- 306
Query: 173 IEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLA 232
A ++F +S Y P L ++ + GE VAL+GPSG GKSTL
Sbjct: 307 PLAGKAPVTAAPAPSLEFSGVSVAYPGRRP-ALRPVSFTVPPGERVALVGPSGAGKSTLL 365
Query: 233 KLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292
LLL DP G I V+ + + DS R + V Q LF+GT+AENI
Sbjct: 366 NLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASD 425
Query: 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352
+ A DEFV LPQG +T IG G+ LSGGQ QRLA+ARA +++ +L+LD
Sbjct: 426 AE--IREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD 483
Query: 353 EATSALDSRSELLVRQAVDRLLGHHTV 379
E T+ LD+ +E V +A+ L TV
Sbjct: 484 EPTAHLDAETEAEVLEALRALAQGRTV 510
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 1e-57
Identities = 119/380 (31%), Positives = 183/380 (48%), Gaps = 32/380 (8%)
Query: 14 LISALVIP-SMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCES 72
LI+A +IP M LV G + S++ ++A LS + + L + ++A
Sbjct: 147 LITAPLIPLFMILV----GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATE 202
Query: 73 ARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGAL-FILCGGSLLV---SGGSFDGCSL 128
R R+ + E +K M L + + L F LV G G
Sbjct: 203 ERIRKDS-----EDFRKATMSVL---RIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGD 254
Query: 129 VSFITSLVFMI------EPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVI---EKPDAV 179
++ L +I +P++ +G ++ GE A ++LF L + EK +
Sbjct: 255 LTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA 314
Query: 180 SLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239
+ ++ N+SF+Y D P + D LNL I+AG+ AL+G SG GKSTL LLL
Sbjct: 315 NEP--PIEISLENLSFRYPDGKPALSD-LNLTIKAGQLTALVGASGAGKSTLLNLLLGFL 371
Query: 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEH 299
P G I V+ D++++ ++ R+ + VSQ+ LF+GT+ ENI E +
Sbjct: 372 APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP--DASDEEIIA 429
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A EFV P G +T IG G+ LSGGQ QRLA+ARAL +S+L+LDE T+ LD
Sbjct: 430 ALDQAGLLEFVP-KPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLD 488
Query: 360 SRSELLVRQAVDRLLGHHTV 379
+ +E ++ QA+ L TV
Sbjct: 489 AETEQIILQALQELAKQKTV 508
|
Length = 559 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 1e-57
Identities = 127/366 (34%), Positives = 194/366 (53%), Gaps = 12/366 (3%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
M+TQ IS L+L++ L +P MA++I G++L + K + + +SL+ E L +I
Sbjct: 131 MSTQ---ISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIR 187
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVS 119
+KA E +SA F A + ++ ++ A T+ + I L + GGS +V
Sbjct: 188 MIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV 247
Query: 120 GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAV 179
GS L SF+ L MI P+ + +N ++G A R+ + V + + V
Sbjct: 248 NGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPV 307
Query: 180 SLDHINGDVKFCNI-SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238
DV NI F Y L+ +N ++ G+ + + GP+G GKSTL L+ R
Sbjct: 308 PEGRGELDV---NIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH 364
Query: 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERV 297
+D G I D + ++LDS R + +VSQ LFS TVA NI R T+ + +
Sbjct: 365 FDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQ---QEI 421
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
EH AR A+ + + LPQGY+T +G RG LSGGQ+QR++IARAL N+ +LILD+A SA
Sbjct: 422 EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSA 481
Query: 358 LDSRSE 363
+D R+E
Sbjct: 482 VDGRTE 487
|
Length = 569 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 1e-53
Identities = 122/388 (31%), Positives = 199/388 (51%), Gaps = 29/388 (7%)
Query: 2 ATQMLVISPVLSLI----SALVIPSMALVIAYLGERLRKISKQS-HLSIASLSAYLNEVL 56
A ML+ PVL+LI +A+ + ++ LV + R++ + + L+ ++S L
Sbjct: 285 ALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISG-----L 339
Query: 57 PAILFVKANNAEMCESARFRRLA--HSDLC----ELLKKRKMKALIPQTVQLIYFGALFI 110
+I +KA+ E S F R A + L EL ++ ++P + + + +
Sbjct: 340 QSIETLKASGLE---SDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILV 396
Query: 111 LCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFD-LTKFK 169
+ G L V G LV+F + + +EP+ + ++ E + RL D L
Sbjct: 397 V--GGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454
Query: 170 SKVIEKPDAVSLD-----HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPS 224
++E+ +A + ++G V+ NI+F Y+ P +++ +L ++ G+ VAL+G S
Sbjct: 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGS 514
Query: 225 GGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG 284
G GKST+AKL+ LY P SG IL D + I + L V +V QDI LF GTV +N+
Sbjct: 515 GSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLT 574
Query: 285 YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344
D I + + A + + + P GY+ + G++LSGGQRQRL IARAL +
Sbjct: 575 LWD--PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632
Query: 345 NSSVLILDEATSALDSRSELLVRQAVDR 372
N S+LILDEATSALD +E ++ + R
Sbjct: 633 NPSILILDEATSALDPETEKIIDDNLRR 660
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 5e-52
Identities = 73/194 (37%), Positives = 112/194 (57%), Gaps = 3/194 (1%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
GD++F N+S +Y N+P VL ++ I+ GE V ++G +G GKS+L L RL + SG
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
IL+D D+ I L LR + ++ QD LFSGT+ N+ D + E +
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALERVG 117
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
EFV +LP G +T + G +LS GQRQ L +ARAL + S +L+LDEAT+++D ++ L
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177
Query: 366 VRQAVDRLLGHHTV 379
+++ + TV
Sbjct: 178 IQKTIREAFKDCTV 191
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 4e-51
Identities = 106/369 (28%), Positives = 188/369 (50%), Gaps = 16/369 (4%)
Query: 12 LSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCE 71
L L+S L IP A++I K++ + + A L++ + E L I +K+ +E
Sbjct: 297 LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAER 356
Query: 72 ----SARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSGGSFDGCS 127
+ F + + K + + I +LI + IL G+ LV G
Sbjct: 357 YSKIDSEFGDYLNKSF-KYQKADQGQQAIKAVTKLIL--NVVILWTGAYLVMRGKLTLGQ 413
Query: 128 LVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGD 187
L++F L + + P++ + + + A RL ++ S+ I K L+++NGD
Sbjct: 414 LITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGD 473
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ ++S+ Y +L ++L I+ ++G SG GKSTLAKLL+ + SG IL
Sbjct: 474 IVINDVSYSYGYGSN-ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN--IGYRDLMTKIDMERVEHTARTAN 305
++ +++I +LR+ + + Q+ +FSG++ EN +G ++ + + + A
Sbjct: 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE---NVSQDEIWAACEIAE 589
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+ + +P GY T + GSS+SGGQ+QR+A+ARAL +S VLILDE+TS LD+ +E
Sbjct: 590 IKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE-- 647
Query: 366 VRQAVDRLL 374
++ V+ LL
Sbjct: 648 -KKIVNNLL 655
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 5e-51
Identities = 101/264 (38%), Positives = 155/264 (58%), Gaps = 3/264 (1%)
Query: 110 ILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFK 169
IL G++LV G +++FI +I + + + + +E FDL
Sbjct: 257 ILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSV 316
Query: 170 SKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKS 229
+ E DA L ++ G V+F +I+F++A++ V D ++ +AG+TVA++GP+G GK+
Sbjct: 317 FQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFD-VSFEAKAGQTVAIVGPTGAGKT 375
Query: 230 TLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM 289
TL LL R+YDP G IL+D D+ + +SLR+ + V QD LF+ ++ ENI R
Sbjct: 376 TLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI--RLGR 433
Query: 290 TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVL 349
E V A+ A A +F+ GY+T +G RG+ LSGG+RQRLAIARA+ +N+ +L
Sbjct: 434 EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPIL 493
Query: 350 ILDEATSALDSRSELLVRQAVDRL 373
+LDEATSALD +E V+ A+D L
Sbjct: 494 VLDEATSALDVETEARVKNAIDAL 517
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 3e-48
Identities = 117/378 (30%), Positives = 188/378 (49%), Gaps = 22/378 (5%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGER-LRKISKQSHLSIASLSAYLNEVLPAILFVK 63
M S L+L++ + V LG +RK + LS +S +++ I ++
Sbjct: 270 MFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELS-GKISGLTVQLINGISKLR 328
Query: 64 ANNAEMCESARFRRLAHSDLCELLKKRKMK-------ALIPQTVQLIYFGALFILCGGSL 116
AE AR+ +L L ++++ A++P F A L GG+
Sbjct: 329 VAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAG 388
Query: 117 LVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKV-IEK 175
L G S ++F T+ + + P ER + + +V K
Sbjct: 389 LSLG------SFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK 442
Query: 176 PDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235
D L +G ++ ++F+Y + PL+LD ++L I GE VA++GPSG GKSTL +LL
Sbjct: 443 TDPGKL---SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL 499
Query: 236 LRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDME 295
L P SG + D D+ + + ++RR +G+V Q+ L SG++ ENI +T ++
Sbjct: 500 LGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLT---LD 556
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
AR A E +R +P G +T I G +LSGGQRQRL IARAL + +L+ DEAT
Sbjct: 557 EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT 616
Query: 356 SALDSRSELLVRQAVDRL 373
SALD+R++ +V ++++RL
Sbjct: 617 SALDNRTQAIVSESLERL 634
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 6e-48
Identities = 81/236 (34%), Positives = 129/236 (54%), Gaps = 10/236 (4%)
Query: 139 IEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYA 198
I+ G K ++ +Q + L + A+ L G + N++
Sbjct: 274 IDGAIGGWKQFSGARQAYKRLNELLANYPSR------DPAMPLPEPEGHLSVENVTIVPP 327
Query: 199 DNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL 258
L ++ ++AGE +A+IGPSG GKSTLA+L++ ++ P SG + +D D++
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387
Query: 259 DSLRRHVGLVSQDITLFSGTVAENIG-YRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
++ +H+G + QD+ LF GTVAENI + + D E++ A+ A E + LP GY
Sbjct: 388 ETFGKHIGYLPQDVELFPGTVAENIARFGE---NADPEKIIEAAKLAGVHELILRLPDGY 444
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
+T IGP G++LSGGQRQR+A+ARALY + +++LDE S LD E + A+ L
Sbjct: 445 DTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL 500
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 1e-47
Identities = 70/183 (38%), Positives = 91/183 (49%), Gaps = 44/183 (24%)
Query: 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250
N+SF+Y P VL ++ I GE++A+IGPSG GKSTLA+L+L L P SG + +D
Sbjct: 4 ENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG 63
Query: 251 HDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
D+ + L HVG + QD LFSG++AENI
Sbjct: 64 ADISQWDPNELGDHVGYLPQDDELFSGSIAENI--------------------------- 96
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
LSGGQRQRL +ARALY N +L+LDE S LD E + QA+
Sbjct: 97 -----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
Query: 371 DRL 373
L
Sbjct: 140 AAL 142
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-44
Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+L ++ ++AGE + +IGPSG GKSTLA+LL+ ++ P SG + +D D++ + L R
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 264 HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
H+G + QD+ LF GT+AENI + D E+V AR A E + LPQGY+T IG
Sbjct: 411 HIGYLPQDVELFDGTIAENIARFG--EEADPEKVIEAARLAGVHELILRLPQGYDTRIGE 468
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
G++LSGGQRQR+A+ARALY + +++LDE S LDS E + A+
Sbjct: 469 GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA 518
|
Length = 580 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 2e-43
Identities = 79/277 (28%), Positives = 129/277 (46%), Gaps = 16/277 (5%)
Query: 107 ALFILCGGSLLVSGGSFDGCSLVSFITSLVFMI-------EPIQGVGKAYNEFKQGEPAI 159
A ++ G L ++ G + +I EP+ A+ Q +
Sbjct: 253 AGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAP--GAFQHLGQVIASA 310
Query: 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVA 219
RL D+ K +V ++ N+SF Y L NL + GE VA
Sbjct: 311 RRLNDILDQKPEV--TFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVA 368
Query: 220 LIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTV 279
++G SG GKSTL +LL +DP G I ++ ++ ++ +LR + +++Q + LFSGT+
Sbjct: 369 ILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTL 428
Query: 280 AENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339
+N+ R E + + ++ + + P G NT +G G LSGG+R+RLA+A
Sbjct: 429 RDNL--RLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA 486
Query: 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376
RAL ++ + +LDE T LD +E RQ + L H
Sbjct: 487 RALLHDAPLWLLDEPTEGLDPITE---RQVLALLFEH 520
|
Length = 573 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 6e-41
Identities = 66/177 (37%), Positives = 103/177 (58%), Gaps = 7/177 (3%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
LN + AG+ +AL+GPSG GK++L LL + P G + ++ +++ + +S R+H
Sbjct: 366 AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPESWRKH 424
Query: 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDM--ERVEHTARTANADEFVRTLPQGYNTHIG 322
+ V Q+ L GT+ +N+ L+ D E+++ A EF+ LPQG +T IG
Sbjct: 425 LSWVGQNPQLPHGTLRDNV----LLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIG 480
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTV 379
+ + LS GQ QRLA+ARAL Q +L+LDE T++LD+ SE LV QA++ T
Sbjct: 481 DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTT 537
|
Length = 588 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 4e-40
Identities = 105/368 (28%), Positives = 171/368 (46%), Gaps = 19/368 (5%)
Query: 11 VLSLISALVIPSMALVIAYLGERL-RKISKQSHLSIASLSAYLNEVLPAILFVKAN---N 66
VLS+ +AL++ + L+ ++ + + ++ + ++A L L L L A +
Sbjct: 150 VLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQALARLRGELAAQLTDALDGAAELVAS 209
Query: 67 AEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGA--LFILCGGSLLVSGGSFD 124
+ + A +L ++ + + L+ G L L G V+ G
Sbjct: 210 GALPAALAQVEEADRELTRAERRAAAATALGAALTLLAAGLAVLGALWAGGPAVADGRLA 269
Query: 125 GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEK----PDAVS 180
+L + + E + A + + A ER+ ++ V E AV
Sbjct: 270 PVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVG 329
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
L ++ ++S Y P VLD ++L + GE VA++GPSG GKSTL L L D
Sbjct: 330 LGKP--TLELRDLSAGYPGA-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLD 386
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEH 299
PL G + +D V ++ D +RR V + +QD LF TV EN+ R T ++
Sbjct: 387 PLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALE 446
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A +++R LP G +T +G G+ LSGG+RQRLA+ARAL ++ +L+LDE T LD
Sbjct: 447 RVGLA---DWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLD 503
Query: 360 --SRSELL 365
+ ELL
Sbjct: 504 AETADELL 511
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 4e-39
Identities = 75/201 (37%), Positives = 102/201 (50%), Gaps = 25/201 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
+++ Y D L ++L I GE ALIGPSG GKSTL +LL RL D P G +
Sbjct: 5 DLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV 62
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGY-----RDLMTKIDMERVEH 299
L+D D+ ++ +D LRR VG+V Q F G++ +N+ Y + + ERVE
Sbjct: 63 LLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEE 122
Query: 300 TARTAN-ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
R A DE L LSGGQ+QRL +ARAL VL+LDE TSAL
Sbjct: 123 ALRKAALWDEVKDRL----------HALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172
Query: 359 DSRSELLVRQAVDRLLGHHTV 379
D S + + + L +T+
Sbjct: 173 DPISTAKIEELIAELKKEYTI 193
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 7e-38
Identities = 98/286 (34%), Positives = 148/286 (51%), Gaps = 24/286 (8%)
Query: 102 LIYFGALFILCGGSLLV---SGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPA 158
L F AL ILCG +L + G+ + L +FI+ L + EP+ + + +Q A
Sbjct: 256 LSLFSAL-ILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVA 314
Query: 159 IERLFDLTKFKSKVIEKP------DAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHI 212
ER+F+L ++ P D L +G + N+SF Y D+ VL +NL +
Sbjct: 315 GERVFEL-------MDGPRQQYGNDDRPLQ--SGRIDIDNVSFAYRDDNL-VLQNINLSV 364
Query: 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI 272
+ VAL+G +G GKSTLA LL+ Y G I +D + ++ LR+ V +V QD
Sbjct: 365 PSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDP 424
Query: 273 TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332
+ + T N+ L I E+V T E R+LP G T +G +G++LS GQ
Sbjct: 425 VVLADTFLANV---TLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQ 481
Query: 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHT 378
+Q LA+AR L Q +LILDEAT+ +DS +E ++QA+ + HT
Sbjct: 482 KQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL-AAVREHT 526
|
Length = 592 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 1e-37
Identities = 70/187 (37%), Positives = 97/187 (51%), Gaps = 15/187 (8%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+SF Y D LD ++L I+ GE V ++GP+G GKSTL +LL L P SG +LVD
Sbjct: 4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGK 63
Query: 252 DVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENI--GYRDLMTKIDMERVEHTARTANAD 307
D+ + L LRR VGLV Q D F TV E + G +L + E R A
Sbjct: 64 DLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG----LPEEEIEERVEEAL 119
Query: 308 EFVRTLP-QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
E V + + +LSGGQ+QR+AIA L + +L+LDE T+ LD +
Sbjct: 120 ELVGLEGLRDRSPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173
Query: 367 RQAVDRL 373
+ + +L
Sbjct: 174 LELLKKL 180
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 2e-37
Identities = 91/291 (31%), Positives = 140/291 (48%), Gaps = 39/291 (13%)
Query: 107 ALFILCGGSLLV------SGGSFDGCSLVSFITSLVFM----IEPIQGVGKAYNEFKQGE 156
AL IL G +V +GG + I VF E + V A+ Q
Sbjct: 249 ALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVI 308
Query: 157 PAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGE 216
+ R+ ++T+ K +V P + + N+SF Y D VL L+L I+AGE
Sbjct: 309 ASARRINEITEQKPEV-TFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGE 367
Query: 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS 276
VAL+G +G GKSTL +LL R +DP G IL++ + + +LR+ + +VSQ + LFS
Sbjct: 368 KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS 427
Query: 277 GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTL-----------PQGYNTHIGPRG 325
T+ +N+ L+ A+ + + L +G N +G G
Sbjct: 428 ATLRDNL----LLAA----------PNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGG 473
Query: 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376
LSGG+++RL IARAL ++ +L+LDE T LD+ +E RQ ++ L H
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE---RQILELLAEH 521
|
Length = 574 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 6e-37
Identities = 70/193 (36%), Positives = 99/193 (51%), Gaps = 50/193 (25%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S +Y VL+ ++L+I AGE VAL+GPSG GKSTL + + L +P SG IL
Sbjct: 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 248 VDDHDVQNIRLDS--LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA 304
+D D+ ++ + LRR +G+V QD LF TV ENI
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------ 100
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRS 362
LSGGQ+QR+A+ARAL + VL+LDE TSALD +R
Sbjct: 101 -----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRR 137
Query: 363 EL--LVRQAVDRL 373
E+ L++ +L
Sbjct: 138 EVRALLKSLQAQL 150
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 4e-36
Identities = 93/330 (28%), Positives = 149/330 (45%), Gaps = 58/330 (17%)
Query: 104 YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLF 163
++G I+ S F G S++S + ++ + + + E+ + A L+
Sbjct: 300 WYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLY 359
Query: 164 DLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPL-VLDQLNLHIRAGETVALIG 222
++ K V D L I ++F N+ F Y + + LN + G+T A +G
Sbjct: 360 EIINRKPLVENNDDGKKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVG 418
Query: 223 PSGGGKSTLAKLLLRLYDPLSGCILVDD-HDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281
SG GKST+ KL+ RLYDP G I+++D H++++I L R +G+VSQD LFS ++
Sbjct: 419 ESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN 478
Query: 282 NI----------------------------------------GYRDLMTKIDMERVEHTA 301
NI D+ D +
Sbjct: 479 NIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538
Query: 302 RTANA---------------DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346
+ +FV LP Y T +G S LSGGQ+QR++IARA+ +N
Sbjct: 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNP 598
Query: 347 SVLILDEATSALDSRSELLVRQAVDRLLGH 376
+LILDEATS+LD++SE LV++ ++ L G+
Sbjct: 599 KILILDEATSSLDNKSEYLVQKTINNLKGN 628
|
Length = 1466 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-34
Identities = 73/190 (38%), Positives = 100/190 (52%), Gaps = 16/190 (8%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ +S Y LD L+L + GE +AL+GPSG GK+TL +L+ L P SG IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANA 306
+D DV + RR++G+V QD LF TVAENI + + + + E AR
Sbjct: 59 IDGRDVTG--VPPERRNIGMVFQDYALFPHLTVAENIAFG--LKLRGVPKAEIRARVREL 114
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSEL 364
E V LSGGQ+QR+A+ARAL + S+L+LDE SALD R EL
Sbjct: 115 LELVGLEGLLNR-----YPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169
Query: 365 LVRQAVDRLL 374
R+ + L
Sbjct: 170 --REELKELQ 177
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-34
Identities = 71/189 (37%), Positives = 100/189 (52%), Gaps = 11/189 (5%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+SF+Y L ++L I GE V LIGP+G GKSTL KLL L P SG +L
Sbjct: 4 IEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 248 VDDHDVQNIR-LDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVEHTARTA 304
VD D + + L LR+ VGLV Q D LF TV + + + + E +E R A
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIE--ERVA 120
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
A E V L + + +LSGGQ+QR+AIA L +L+LDE T+ LD +
Sbjct: 121 EALELVG-LEELLDRPP----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 365 LVRQAVDRL 373
+ + + +L
Sbjct: 176 ELLELLKKL 184
|
Length = 235 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 3e-34
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 42/172 (24%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+SF Y + VL L+L ++ GE +AL+G SG GKSTL +LL P G I +D
Sbjct: 5 NVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGV 64
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311
V ++ +L + +++Q LF T+ N+G R
Sbjct: 65 PVSDLE-KALSSLISVLNQRPYLFDTTLRNNLGRR------------------------- 98
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
SGG+RQRLA+AR L Q++ +++LDE T LD +E
Sbjct: 99 ----------------FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITE 134
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-34
Identities = 62/191 (32%), Positives = 92/191 (48%), Gaps = 18/191 (9%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N++ KY LD ++ + GE L+GP+G GK+TL K+L L P SG IL
Sbjct: 5 IEVRNLTKKY-GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI----GYRDLMTKIDMERVEHTAR 302
V +DV +RR +G V Q+ +L+ TV EN+ L + ER+E
Sbjct: 64 VLGYDV-VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
++ +LSGG +QRL+IA AL + +LILDE TS LD S
Sbjct: 123 LFGLEDKANKKV-----------RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 363 ELLVRQAVDRL 373
+ + + L
Sbjct: 172 RREIWELLREL 182
|
Length = 293 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 5e-34
Identities = 69/186 (37%), Positives = 100/186 (53%), Gaps = 22/186 (11%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N+S +Y + +D +NL I GE + LIGPSG GK+T K++ RL +P SG IL
Sbjct: 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA-- 304
+D D+ ++ LRR +G V Q I LF TVAENI + D ER++ A
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLD 119
Query: 305 ----NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD- 359
+ E+ P LSGGQ+QR+ +ARAL + +L++DE ALD
Sbjct: 120 LVGLDPSEYADRYP-----------HELSGGQQQRVGVARALAADPPILLMDEPFGALDP 168
Query: 360 -SRSEL 364
+R +L
Sbjct: 169 ITRKQL 174
|
Length = 309 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 7e-34
Identities = 64/192 (33%), Positives = 92/192 (47%), Gaps = 24/192 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+SF Y +LD L+ I GE ++GP+G GKSTL K L L P SG +L+D
Sbjct: 7 NLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAE--------NIGYRDLMTKIDMERVEHTAR 302
D+ ++ L + + V Q + G TV E ++G +K D E VE
Sbjct: 65 DIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALE 124
Query: 303 TANADEFV-RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ R + LSGG+RQR+ IARAL Q + +L+LDE TS LD
Sbjct: 125 LLGLEHLADRPV------------DELSGGERQRVLIARALAQETPILLLDEPTSHLDIA 172
Query: 362 SELLVRQAVDRL 373
++ V + + L
Sbjct: 173 HQIEVLELLRDL 184
|
Length = 258 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 8e-34
Identities = 64/179 (35%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
++ N+S + LD ++L I GE +IG SG GKSTL +L+ L P SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 245 CILVDDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHT 300
+ VD D+ + L LR+ +G++ Q L S TV EN+ + + + ++
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK-- 119
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
R A E V G + + LSGGQ+QR+AIARAL N +L+ DEATSALD
Sbjct: 120 QRVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
|
Length = 339 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 3e-33
Identities = 62/194 (31%), Positives = 104/194 (53%), Gaps = 21/194 (10%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
G+++ N+S +YA ++P VL ++ ++AGE + ++G +G GKSTL L R + G
Sbjct: 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK 64
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
I +D D+ I L+ LR + ++ QD TLFSGT+ N+ D + E + R +
Sbjct: 65 IEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL---DPFDEYSDEEIYGALRVSE 121
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
G +LS GQRQ L +ARAL + VL+LDEAT+++D ++ L
Sbjct: 122 G------------------GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 366 VRQAVDRLLGHHTV 379
+++ + + T+
Sbjct: 164 IQKTIREEFTNSTI 177
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 3e-33
Identities = 68/200 (34%), Positives = 99/200 (49%), Gaps = 21/200 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----I 246
N++ Y + L +NL I + ALIGPSG GKSTL + L R+ D + G +
Sbjct: 6 NLNLFYGEKE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV 63
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDM-ERVEH 299
L D D+ + ++D LRR VG+V Q F ++ +NI Y + K ++ E VE
Sbjct: 64 LFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEE 123
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ + A L + LSGGQ+QRL IARAL VL+LDE TSALD
Sbjct: 124 SLKKA-------ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176
Query: 360 SRSELLVRQAVDRLLGHHTV 379
+ + + + L +T+
Sbjct: 177 PIATGKIEELIQELKKKYTI 196
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 8e-33
Identities = 66/180 (36%), Positives = 94/180 (52%), Gaps = 9/180 (5%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N++ +Y V + LNL I GE + LIGPSG GK+T K++ RL +P SG I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANA 306
+D D++ LRR +G V Q I LF TV ENI + K E++ R
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR--ERADEL 117
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSEL 364
V P + LSGGQ+QR+ +ARAL + +L++DE ALD +R +L
Sbjct: 118 LALVGLDPAEF---ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-32
Identities = 65/180 (36%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----I 246
+++ Y D L +NL I + ALIGPSG GKSTL + L R+ D + G +
Sbjct: 12 DLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV 69
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDMERVEHT 300
L+D ++ + ++D LRR VG+V Q F ++ +N+ Y + K E VE +
Sbjct: 70 LLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESS 129
Query: 301 ARTAN-ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ A DE L + LSGGQ+QRL IARAL VL++DE TSALD
Sbjct: 130 LKKAALWDEVKDRLHKS--------ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 4e-32
Identities = 60/186 (32%), Positives = 84/186 (45%), Gaps = 59/186 (31%)
Query: 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248
+ N+SF+Y LD ++L ++AGE VAL+GP+G GKSTL + + L P SG IL+
Sbjct: 1 EIENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 249 DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308
D D+ + L+ LRR +G
Sbjct: 59 DGKDIAKLPLEELRRRIGY----------------------------------------- 77
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ 368
+PQ LSGGQRQR+A+ARAL N +L+LDE TS LD S + +
Sbjct: 78 ----VPQ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLE 121
Query: 369 AVDRLL 374
+ L
Sbjct: 122 LLRELA 127
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-32
Identities = 60/193 (31%), Positives = 85/193 (44%), Gaps = 23/193 (11%)
Query: 192 NISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249
N+S Y L+ ++L + GE VAL+GPSG GKSTL +++ L P SG +LVD
Sbjct: 5 NVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVD 64
Query: 250 DHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTA 304
V G V Q L TV +N+ + + ER E
Sbjct: 65 GEPVT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELV 119
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
F P LSGG RQR+A+ARAL + VL+LDE SALD+ +
Sbjct: 120 GLSGFENAYP-----------HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTRE 168
Query: 365 LVRQAVDRLLGHH 377
+++ + +
Sbjct: 169 QLQEELLDIWRET 181
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-32
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 14/188 (7%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
+++F +S Y+ +L +++ G ++GPSG GKSTL KL+ RL DP G I
Sbjct: 3 EIEFKEVS--YSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA 306
L+D D++ I + LRR +G+V Q LF GTV +NI Y ++ + +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML---------KGEKNVDV 111
Query: 307 DEFVRTLPQGYNTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+ ++ + G N R +LSGG+ QR++IAR L N VL+LDE TSALD S +
Sbjct: 112 EYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169
Query: 366 VRQAVDRL 373
+ + + +L
Sbjct: 170 IEELIVKL 177
|
Length = 241 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 7e-32
Identities = 64/184 (34%), Positives = 90/184 (48%), Gaps = 17/184 (9%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
NISF Y +LD L+L + AGE +AL G +G GK+TLAK+L L SG IL++
Sbjct: 4 NISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK 62
Query: 252 DVQNIRLDSLRRHVGLVSQDIT--LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEF 309
++ R+ +G V QD+ LF+ +V E + E+ E + +
Sbjct: 63 PIKAKE---RRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL 119
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
P SLSGGQ+QRLAIA AL +LI DE TS LD ++ V +
Sbjct: 120 KERHPL-----------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL 168
Query: 370 VDRL 373
+ L
Sbjct: 169 IREL 172
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 8e-32
Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 26/200 (13%)
Query: 188 VKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+ + SF + L +NL + GE VA++GP G GKS+L LL + LSG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI--GYRDLMTKIDMERVEHTAR 302
+ S+ + VSQ+ + +GT+ ENI G D ER E +
Sbjct: 61 SV-------------SVPGSIAYVSQEPWIQNGTIRENILFGKP-----FDEERYEKVIK 102
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
+ + LP G T IG +G +LSGGQ+QR+++ARA+Y ++ + +LD+ SA+D+
Sbjct: 103 ACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162
Query: 363 ELLVRQAVDRLLGHHTVREK 382
R + + + K
Sbjct: 163 G---RHIFENCILGLLLNNK 179
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-31
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 11/175 (6%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+ + D VL ++L ++ GE V +IGPSG GKSTL + + L +P SG I+
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 248 VDDHDVQN--IRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA 304
+D + + ++ LR+ VG+V Q LF TV ENI + M + E R
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITL-APIKVKGMSKAEAEERAL 117
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
E V + + LSGGQ+QR+AIARAL N V++ DE TSALD
Sbjct: 118 ELLEKVGLADK-----ADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-31
Identities = 68/176 (38%), Positives = 89/176 (50%), Gaps = 15/176 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN---IRLDS 260
L +NL I AGE VA++GPSG GKSTL LL L P SG +L++ D+ L
Sbjct: 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79
Query: 261 LRR-HVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
LRR +G V Q+ L TV EN+ +L I + R A V L
Sbjct: 80 LRRKKIGFVFQNFNLLPDLTVLENV---ELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL 136
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374
+ S LSGGQ+QR+AIARAL N +++ DE T LDS++ + V LL
Sbjct: 137 KK---KPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT----AKEVLELL 185
|
Length = 226 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-31
Identities = 65/200 (32%), Positives = 98/200 (49%), Gaps = 23/200 (11%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S + D +D ++L I+ GE V L+GPSG GK+TL +++ P SG IL
Sbjct: 6 LEIRNVSKSFGDF--TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY-----RDLMTKIDMERVEHTA 301
+D D+ + + +R +G+V Q LF TV EN+ + + L RVE
Sbjct: 64 LDGEDITD--VPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEAL 121
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ F P LSGGQ+QR+A+ARAL VL+LDE SALD++
Sbjct: 122 ELVGLEGFADRKP-----------HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170
Query: 362 SELLVRQAVDRLLG--HHTV 379
+R+ + L T
Sbjct: 171 LREQMRKELKELQRELGITF 190
|
Length = 352 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-31
Identities = 63/182 (34%), Positives = 88/182 (48%), Gaps = 21/182 (11%)
Query: 188 VKFCNISFKYADNMPLV--LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
++ N+S + D V L ++L + GE +IG SG GKSTL + + L P SG
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 246 ILVDDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERV 297
+LVD D+ + L RR +G++ Q L S TV EN+ + + ERV
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
++ P + LSGGQ+QR+ IARAL N VL+ DEATSA
Sbjct: 122 LELLELVGLEDKADAYP-----------AQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 358 LD 359
LD
Sbjct: 171 LD 172
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 4e-31
Identities = 62/182 (34%), Positives = 83/182 (45%), Gaps = 42/182 (23%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S Y VLD L+L I AGE V ++GP+G GKSTL K L L P SG IL+D
Sbjct: 4 NLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311
D+ ++ L R + V Q E +G L AD
Sbjct: 62 DLASLSPKELARKIAYVPQ--------ALELLGLAHL-----------------ADRPFN 96
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
LSGG+RQR+ +ARAL Q +L+LDE TS LD ++ + + +
Sbjct: 97 E---------------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141
Query: 372 RL 373
RL
Sbjct: 142 RL 143
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 125 bits (314), Expect = 5e-31
Identities = 101/378 (26%), Positives = 182/378 (48%), Gaps = 41/378 (10%)
Query: 15 ISALVIPSMALVIAYLGERL-----RKISKQSHLSIASLSAYLNEVLPAILFVKANNAEM 69
I+A++IP + L+ ++ +R R++ + +S + + ++ NE L + ++A
Sbjct: 1106 IAAVIIPPLGLLYFFV-QRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFE--- 1161
Query: 70 CESARFRRLAHSDLCELLKKRKMKALIPQTVQ--------------LIYFGALFILCGGS 115
E RF + + E KA P V ++ F ALF +
Sbjct: 1162 -EQERFIHQSDLKVDE-----NQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRH 1215
Query: 116 LLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSK---V 172
L +G G S VS+ + F + + + +E + A+ERL + ++ + +
Sbjct: 1216 SLSAG--LVGLS-VSYSLQVTFYLNWLV---RMSSEMETNIVAVERLKEYSETEKEAPWQ 1269
Query: 173 IEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLA 232
I++ S G V+F N +Y +++ LVL +N+ I GE V ++G +G GKS+L
Sbjct: 1270 IQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLT 1329
Query: 233 KLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292
L R+ + G I++D ++ I L LR + ++ QD LFSG++ N+ D ++
Sbjct: 1330 LGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL---DPFSQY 1386
Query: 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352
E V A+ FV LP + G +LS GQRQ + +ARAL + + +L+LD
Sbjct: 1387 SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLD 1446
Query: 353 EATSALDSRSELLVRQAV 370
EAT+A+D ++ L++ +
Sbjct: 1447 EATAAVDLETDNLIQSTI 1464
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 5e-31
Identities = 68/184 (36%), Positives = 90/184 (48%), Gaps = 30/184 (16%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S + D VL ++L + GE V +IGPSG GKSTL + L L +P SG I
Sbjct: 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 248 VDDHDV-QNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMT--KIDMERVEHTAR- 302
VD DV + LRR VG+V Q LF TV EN+ + K+ A
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTL-APVKVKKLSKAEAREKALE 119
Query: 303 -------TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
AD + P + LSGGQ+QR+AIARAL + V++ DE T
Sbjct: 120 LLEKVGLADKADAY----P-----------AQLSGGQQQRVAIARALAMDPKVMLFDEPT 164
Query: 356 SALD 359
SALD
Sbjct: 165 SALD 168
|
Length = 240 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 1e-30
Identities = 63/187 (33%), Positives = 90/187 (48%), Gaps = 28/187 (14%)
Query: 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248
+ N+S Y + L ++L I GE VALIGPSG GKSTL + L L +P SG +L+
Sbjct: 2 EVENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 249 DDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENI-----GYR-------DLMTKI 292
D D+ ++ L LRR +G++ Q L +V EN+ G R L K
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE 120
Query: 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352
+ +R + R LSGGQ+QR+AIARAL Q +++ D
Sbjct: 121 EKQRALAALERVGLLDKAYQ-----------RADQLSGGQQQRVAIARALMQQPKLILAD 169
Query: 353 EATSALD 359
E ++LD
Sbjct: 170 EPVASLD 176
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-30
Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 20/191 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+ + VL +NL I GE V L+GPSG GKSTL +++ L +P SG IL
Sbjct: 4 LELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKIDME----RVEHTAR 302
+D DV + L +R + +V Q+ L+ TV ENI + + + RV+ A+
Sbjct: 62 IDGRDVTD--LPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
+ + P LSGGQRQR+A+ARAL + V +LDE S LD++
Sbjct: 120 LLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKL 168
Query: 363 ELLVRQAVDRL 373
+L+R + +L
Sbjct: 169 RVLMRSEIKKL 179
|
Length = 338 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-30
Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 25/184 (13%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+K N+SF Y ++ L ++ I GE VA++G +G GKST++K+L L P SG I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGY--------RDLMTKIDMERV 297
+D + L +R+ +G++ Q D TV ++I + M I +
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDI----I 123
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ A+ ++++ PQ +LSGGQ+QR+AIA L N ++I DE+TS
Sbjct: 124 DDLAKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSM 172
Query: 358 LDSR 361
LD +
Sbjct: 173 LDPK 176
|
Length = 271 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-30
Identities = 67/182 (36%), Positives = 90/182 (49%), Gaps = 24/182 (13%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N+S Y L ++ HI GE V L GPSG GKSTL KL+ P G IL
Sbjct: 2 IRFENVSKAYP-GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 248 VDDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTART 303
V+ HD+ ++ + LRR +G+V QD L TV EN+ + I E R
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP--LRVIGKPPREIRRRV 118
Query: 304 ANADEFV------RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ + V R LP S LSGG++QR+AIARA+ +VL+ DE T
Sbjct: 119 SEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGN 167
Query: 358 LD 359
LD
Sbjct: 168 LD 169
|
Length = 223 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 6e-30
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 47/183 (25%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S +Y LD ++L + GE L+GP+G GK+TL K++L L P SG I V
Sbjct: 5 NLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGK 62
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
D++ + ++R +G + ++ +L+ TV EN+
Sbjct: 63 DIKKEPEE-VKRRIGYLPEEPSLYENLTVRENL--------------------------- 94
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
LSGG +QRLA+A+AL + +LILDE TS LD S + +
Sbjct: 95 ----------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL 138
Query: 371 DRL 373
L
Sbjct: 139 REL 141
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 9e-30
Identities = 65/164 (39%), Positives = 82/164 (50%), Gaps = 12/164 (7%)
Query: 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI--RLD 259
+D ++ +R GET+ L+G SG GKSTLA++L L P SG I+ D D+ L
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELR 363
Query: 260 SLRRHVGLVSQDITLFS----GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQ 315
LRR + +V QD S TV + + L E AR A E V LP
Sbjct: 364 RLRRRIQMVFQD-PYSSLNPRMTVGDILAEP-LRIHGGGSGAERRARVAELLELVG-LPP 420
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ LSGGQRQR+AIARAL +LILDE SALD
Sbjct: 421 E---FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALD 461
|
Length = 539 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-29
Identities = 58/166 (34%), Positives = 84/166 (50%), Gaps = 22/166 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV---QNIRLDS 260
VL ++L +R GE +A+IGPSG GKSTL +L++ L P SG +L+D D+ L
Sbjct: 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74
Query: 261 LRRHVGLVSQDITLFSG-TVAENIGY------RDLMTKIDMERVEHTARTANADEFVRTL 313
LRR +G++ Q LF TV EN+ + R +I E V
Sbjct: 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIR-EIVLEKLEAVGLRGAEDLY 133
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
P + LSGG ++R+A+ARAL + +L+ DE T+ LD
Sbjct: 134 P-----------AELSGGMKKRVALARALALDPELLLYDEPTAGLD 168
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-29
Identities = 62/177 (35%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++SF LD ++ I+ GET+ L+G SG GKSTLA+ +L L P SG I+ D
Sbjct: 8 SVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGK 67
Query: 252 DVQNI---RLDSLRRHVGLVSQDITLFSG-----TVAENIGYRDLMTKIDMERVEHTART 303
D+ + R+ + +V QD S T+ E I + + + +
Sbjct: 68 DLLKLSRRLRKIRRKEIQMVFQDP--MSSLNPRMTIGEQI--AEPLRIHGKLSKKEARKE 123
Query: 304 ANADEFVR-TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A V LP+ + LSGGQRQR+AIARAL N +LI DE TSALD
Sbjct: 124 AVLLLLVGVGLPE---EVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-29
Identities = 66/179 (36%), Positives = 90/179 (50%), Gaps = 20/179 (11%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S Y + LD ++L I+ GE L+GPSG GK+TL +L+ P SG IL
Sbjct: 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTAR 302
+D D+ N L +R V V Q+ LF TV ENI + + K+ ERV
Sbjct: 59 LDGKDITN--LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALD 116
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ + P S LSGGQ+QR+AIARAL VL+LDE ALD +
Sbjct: 117 LVQLEGYANRKP-----------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 2e-29
Identities = 63/178 (35%), Positives = 88/178 (49%), Gaps = 14/178 (7%)
Query: 192 NISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249
N+S Y L ++L I GE VA++GPSG GKSTL +L L P SG + VD
Sbjct: 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVD 64
Query: 250 DHDVQNI---RLDSLRR-HVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA 304
D+ + L + RR H+G V Q L T EN+ + + V R
Sbjct: 65 GTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENV-----ELPLLLAGVPKKERRE 119
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
A+E + + G + S LSGGQ+QR+AIARAL + +++ DE T LDS +
Sbjct: 120 RAEELLERV--GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-29
Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 31/186 (16%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ ++ + D ++LD ++L + GE +A++G SG GKSTL +L+L L P G IL
Sbjct: 9 IEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 248 VDDHDVQNI---RLDSLRRHVGLVSQDITLFSG-TVAENIGY---------RDLMTKIDM 294
+D D+ + L +R+ +G++ Q LFS TV EN+ + L+ ++ +
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL 126
Query: 295 ERVEHTA-RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353
++E R A AD + P S LSGG R+R+A+ARA+ + +L LDE
Sbjct: 127 MKLELVGLRGAAADLY----P-----------SELSGGMRKRVALARAIALDPELLFLDE 171
Query: 354 ATSALD 359
TS LD
Sbjct: 172 PTSGLD 177
|
Length = 263 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 6e-29
Identities = 49/130 (37%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 229 STLAKLLLRLYDPLSGCILVDDHDVQNI-RLDSLRRHVGLVSQDITLF-SGTVAENIGYR 286
STL KL+ L P SG IL+D D + LR+ +G+V QD LF TV EN+ +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 287 DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346
L K R E +F+ P +LSGGQ+QR+AIARAL +
Sbjct: 61 -LRDKEADARAEEALERVGLPDFLDREP----------VGTLSGGQKQRVAIARALLKKP 109
Query: 347 SVLILDEATS 356
+L+LDE T+
Sbjct: 110 KLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 1e-28
Identities = 71/201 (35%), Positives = 100/201 (49%), Gaps = 23/201 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--P---LSGCI 246
N++F Y L +NL I + A IGPSG GKSTL + R+Y+ P G I
Sbjct: 18 NLNFYYGKFH--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI 75
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDM-ERVEH 299
L+D ++ + D LR VG+V Q T F ++ +NI + + +++ +M ERVE
Sbjct: 76 LLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEW 135
Query: 300 TARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
A +E L Q G SLSGGQ+QRL IAR + VL+LDE SAL
Sbjct: 136 ALTKAALWNEVKDKLHQS--------GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSAL 187
Query: 359 DSRSELLVRQAVDRLLGHHTV 379
D S + + + L +TV
Sbjct: 188 DPISTGRIEELITELKQDYTV 208
|
Length = 260 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-28
Identities = 73/194 (37%), Positives = 98/194 (50%), Gaps = 29/194 (14%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+ISF+Y D L ++ + GE VA++G +G GKSTLAKLL L P +G I V
Sbjct: 10 HISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGM 69
Query: 252 DVQNIRLDSLRRHVGLVSQ--DITLFSGTVA-------ENIGY-RDLMTKIDMERVEHTA 301
+ + +RR VG+V Q D TV ENIG R+ M +ERV+
Sbjct: 70 VLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEM----VERVDQAL 125
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD-- 359
R ++F+ P LSGGQ+QR+AIA L ++ILDEATS LD
Sbjct: 126 RQVGMEDFLNREP-----------HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 360 SRSELL--VRQAVD 371
R E+L VRQ +
Sbjct: 175 GRREVLETVRQLKE 188
|
Length = 279 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-28
Identities = 66/197 (33%), Positives = 108/197 (54%), Gaps = 14/197 (7%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
G +KF ++ +Y +P VL L+ I E V ++G +G GKS++ L R+ + G
Sbjct: 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR 1295
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM-ERVEHTARTA 304
IL+D D+ L LR+ +G++ Q LFSGTV N+ + D+ E +E A
Sbjct: 1296 ILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLER----A 1351
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
+ + +R G + + G + S GQRQ L++ARAL + S +L+LDEAT+A+D R++
Sbjct: 1352 HLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1411
Query: 365 LVRQAVDRLLGHHTVRE 381
L+++ T+RE
Sbjct: 1412 LIQK---------TIRE 1419
|
Length = 1622 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 3e-28
Identities = 67/190 (35%), Positives = 96/190 (50%), Gaps = 25/190 (13%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----ILVDDHDVQNIRLD 259
L ++NL I + ALIGPSG GKST + L R+ D + +L+D D+ +D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 260 --SLRRHVGLVSQDITLFSGTVAENIGY-------RDLMTKIDMERVEHTARTANA-DEF 309
LR+ VG+V Q F ++ +N+ Y +D K+D E VE + + A DE
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKD-KKKLD-EIVEKSLKGAALWDEV 136
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
L + LSGGQ+QRL IARAL VL++DE TSALD S L + +
Sbjct: 137 KDRLKKS--------ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL 188
Query: 370 VDRLLGHHTV 379
+ L +T+
Sbjct: 189 IQELKKDYTI 198
|
Length = 250 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 7e-28
Identities = 55/161 (34%), Positives = 75/161 (46%), Gaps = 21/161 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL+ +NL + GE VA++GPSG GKSTL +L+ L P SG +L+D +
Sbjct: 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD-----GRPVTGPGP 72
Query: 264 HVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
+G V Q+ L TV +N+ + + E R E V +
Sbjct: 73 DIGYVFQEDALLPWLTVLDNVAL--GLELRGKSKAEARERAKELLELV---------GLA 121
Query: 323 PRGSS----LSGGQRQRLAIARALYQNSSVLILDEATSALD 359
LSGG RQR+AIARAL +L+LDE ALD
Sbjct: 122 GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALD 162
|
Length = 248 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 115 bits (288), Expect = 9e-28
Identities = 58/129 (44%), Positives = 87/129 (67%), Gaps = 4/129 (3%)
Query: 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEHTA 301
SG IL+D D+ + L LR +VSQ+ LF+ ++ ENI + ++ T+ D++R
Sbjct: 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRA---C 1332
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ A DEF+ +LP Y+T++GP G SLSGGQ+QR+AIARAL + +L+LDEATS+LDS
Sbjct: 1333 KFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSN 1392
Query: 362 SELLVRQAV 370
SE L+ + +
Sbjct: 1393 SEKLIEKTI 1401
|
Length = 1466 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-27
Identities = 69/182 (37%), Positives = 95/182 (52%), Gaps = 24/182 (13%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N++ Y N LD +N+ I AGE V L+GPSG GKSTL KL+ + P SG I
Sbjct: 1 IEFINVTKTYP-NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 248 VDDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTART 303
V+ DV ++R + LRR +G+V QD L V EN+ + + + E R
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGVPPREIRKRV 117
Query: 304 ANADEFV------RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
A E V R LP LSGG++QR+AIARA+ + ++LI DE T
Sbjct: 118 PAALELVGLSHKHRALPAE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGN 166
Query: 358 LD 359
LD
Sbjct: 167 LD 168
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (288), Expect = 1e-27
Identities = 76/247 (30%), Positives = 125/247 (50%), Gaps = 12/247 (4%)
Query: 127 SLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL---FDLTKFKSKVIEKPDAVSLDH 183
S IT+L+ + ++ KA N ++ER+ DL + +IE VS
Sbjct: 1177 SYTLNITTLLSGV--LRQASKAENSLN----SVERVGNYIDLPSEATAIIENNRPVSGWP 1230
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
G +KF ++ +Y +P VL L+ + E V ++G +G GKS++ L R+ +
Sbjct: 1231 SRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK 1290
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G I++DD DV L LRR + ++ Q LFSGTV NI D+ A
Sbjct: 1291 GRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHI 1350
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
+ + P G + + G + S GQRQ L++ARAL + S +L+LDEAT+++D R++
Sbjct: 1351 KDV---IDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTD 1407
Query: 364 LLVRQAV 370
L+++ +
Sbjct: 1408 SLIQRTI 1414
|
Length = 1495 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-27
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 27/183 (14%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N++ Y + VL+ ++L + GE ALIGP+G GKSTL K +L L P SG I +
Sbjct: 9 NLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFG- 65
Query: 252 DVQNIRLDSLRRHVGLVSQDITL---FSGTVAE--------NIGYRDLMTKIDMERVEHT 300
+ +R R +G V Q ++ F TV + G+ + K D E+V+
Sbjct: 66 --KPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEA 123
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
++ + IG LSGGQ+QR+ +ARAL QN +L+LDE + +D
Sbjct: 124 LERVGMEDLR-------DRQIG----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDV 172
Query: 361 RSE 363
+
Sbjct: 173 AGQ 175
|
Length = 254 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-27
Identities = 61/196 (31%), Positives = 108/196 (55%), Gaps = 3/196 (1%)
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
+ G++K ++ +Y +N+ VL + +I+ G+ V + G +G GKS+L+ R+ D
Sbjct: 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD 75
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G I++D D+ + L +LR + ++ QD LFSG++ N+ D K +R+
Sbjct: 76 GKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL---DPECKCTDDRLWEALEI 132
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
A V++LP G + + G + S GQRQ +ARA + SS+LI+DEAT+++D +E
Sbjct: 133 AQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE 192
Query: 364 LLVRQAVDRLLGHHTV 379
++++ V TV
Sbjct: 193 NILQKVVMTAFADRTV 208
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-27
Identities = 67/180 (37%), Positives = 96/180 (53%), Gaps = 15/180 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDS 260
L +NL+I GE VA+IGPSG GKSTL + + RL +P SG IL++ D+ +R L
Sbjct: 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRK 76
Query: 261 LRRHVGLVSQDITLFSG-TVAENI-----GYRDLMTKI-DMERVEHTARTANADEFVRTL 313
LRR +G++ Q L TV EN+ GY+ + E R +A E V
Sbjct: 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA 136
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
+ Y R LSGGQ+QR+AIARAL Q +++ DE ++LD ++ V + R+
Sbjct: 137 DKAYQ-----RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRI 191
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 4e-27
Identities = 62/183 (33%), Positives = 87/183 (47%), Gaps = 22/183 (12%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N+S Y + L ++LHIR GE + L GPSG GK+TL KLL P G +
Sbjct: 2 IEFHNVSKAYPGGVA-ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 248 VDDHDV---QNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY-----RDLMTKIDMERVE 298
+ DV + +L LRR +G+V QD L TV EN+ +I RV
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQ-RRVG 119
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
R + P+ LSGG++QR+AIARA+ + +L+ DE T L
Sbjct: 120 AALRQVGLEHKADAFPE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 359 DSR 361
D
Sbjct: 169 DPD 171
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-27
Identities = 69/185 (37%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S Y L +NL I GE VA+IGPSG GKSTL + L L DP SG IL
Sbjct: 4 IEVKNLSKTYPGGHQ-ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 248 VDDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENI-----GYRDLMTKI-DMERV 297
+ + ++ L LRR +G++ Q L +V EN+ GY + +
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK 122
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
E A+ +A E V L + Y R S+LSGGQ+QR+AIARAL Q +++ DE ++
Sbjct: 123 EDKAQALDALERVGILDKAYQ-----RASTLSGGQQQRVAIARALVQQPKIILADEPVAS 177
Query: 358 LDSRS 362
LD S
Sbjct: 178 LDPES 182
|
Length = 258 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 6e-27
Identities = 69/188 (36%), Positives = 91/188 (48%), Gaps = 30/188 (15%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
LD ++L I +GE VAL+GPSG GK+TL +L+ L P SG IL D + R+
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT--DVPVQERN 75
Query: 265 VGLVSQDITLFSG-TVAENIGY---------RDLMTKIDMERVEHTARTANADEFVRTLP 314
VG V Q LF TV +N+ + R +I +V + D P
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-AKVHELLKLVQLDWLADRYP 134
Query: 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSEL--LVRQAV 370
+ LSGGQRQR+A+ARAL VL+LDE ALD+ R EL +R+
Sbjct: 135 -----------AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH 183
Query: 371 DRLLGHHT 378
D L H T
Sbjct: 184 DEL--HVT 189
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-26
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 18/175 (10%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
LD LNL I GE V L+GPSG GK+T +++ L +P SG I + DV + L R
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTD--LPPKDR 72
Query: 264 HVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
+ +V Q+ L+ TV +NI + R + ERV A + + P
Sbjct: 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP---- 128
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
LSGGQRQR+A+ RA+ + V ++DE S LD++ + +R + RL
Sbjct: 129 -------KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRL 176
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-26
Identities = 62/177 (35%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 192 NISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249
N+S Y L+ ++L I GET+ ++G SG GKSTLA+LL L P SG IL+D
Sbjct: 8 NLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLD 67
Query: 250 DHDVQN-IRLDSLRRHVGLVSQDITLF---SGTVAENI--GYRDLMTKIDMERVEHTART 303
+ R + R V +V QD TV + R +R+
Sbjct: 68 GKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQ 127
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
R LSGGQRQR+AIARAL +LILDE TSALD
Sbjct: 128 VGLPPSFLDR----------RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 75/199 (37%), Positives = 106/199 (53%), Gaps = 20/199 (10%)
Query: 188 VKFCNISFKYADNMPLV--LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
++ NIS + + L+ ++LHI AGE +IG SG GKSTL + + L P SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 246 ILVDDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKID-MERVEHT 300
+LVD D+ + L RR +G++ Q L S TV +N+ L ++ + E
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVA---LPLELAGTPKAEIK 118
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD- 359
AR E V G + + LSGGQ+QR+AIARAL N VL+ DEATSALD
Sbjct: 119 ARVTELLELV-----GLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 360 --SRSEL-LVRQAVDRLLG 375
+RS L L++ ++R LG
Sbjct: 174 ATTRSILELLKD-INRELG 191
|
Length = 343 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 7e-26
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 17/197 (8%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N++ Y +D L+L++ GE L+G +G GK+T K+L P SG
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTAR 302
++ + ++ R + R+ +G Q LF TV E++ + + L E VE R
Sbjct: 61 INGYSIRTDR-KAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLR 119
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
L N +LSGG +++L++A AL SVL+LDE TS LD S
Sbjct: 120 VLG-------LTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 363 ELLVRQAVDRLLGHHTV 379
+ + + ++
Sbjct: 169 RRAIWDLILEVRKGRSI 185
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 65/178 (36%), Positives = 90/178 (50%), Gaps = 22/178 (12%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
V+ IS + V+ L+L I GE + L+GPSG GK+T+ +L+ P SG I+
Sbjct: 15 VELRGISKSFDGKE--VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTK-----IDMERVEHTA 301
+D D+ ++ + RHV V Q LF TV EN+ + M K I RV
Sbjct: 73 LDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIT-PRVMEAL 129
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
R +EF + P LSGGQ+QR+AIARA+ VL+LDE+ SALD
Sbjct: 130 RMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-25
Identities = 64/165 (38%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSL 261
LD ++L +R GE AL+G +G GKSTL K+L +Y P SG IL+D V + R D+L
Sbjct: 23 ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPR-DAL 81
Query: 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTK----IDMERVEHTARTANADEFVRTLPQG 316
+ V Q+++L +VAENI T+ ID + + AR A + P
Sbjct: 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDP-- 139
Query: 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+T +G LS QRQ + IARAL ++ VLILDE T+AL +
Sbjct: 140 -DTLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVK 179
|
Length = 500 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-25
Identities = 65/188 (34%), Positives = 98/188 (52%), Gaps = 20/188 (10%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----ILVDDHDVQNIRLD 259
L ++L I A IGPSG GKST + L R+ D + GC I +D D+ + RLD
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 260 --SLRRHVGLVSQDITLFSGTVAENIGYRDLM-----TKIDMER-VEHTARTANADEFVR 311
LR VG+V Q F ++ EN+ Y + +K +++ VE + R A E V+
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
+ G+ LSGGQ+QRL IARA+ + V+++DE SALD + V + +D
Sbjct: 155 D-------RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 372 RLLGHHTV 379
L ++T+
Sbjct: 208 ELRQNYTI 215
|
Length = 267 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 61/166 (36%), Positives = 91/166 (54%), Gaps = 20/166 (12%)
Query: 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266
+ +L++ GE VA++GPSG GKSTL L+ +P SG I V+D L +R V
Sbjct: 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVS 73
Query: 267 LVSQDITLFSG-TVAENIG---YRDL-MTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
++ Q+ LF+ TV +NIG + L + E+V A+ +++ LP+
Sbjct: 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE------ 127
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSELL 365
LSGGQRQR+A+AR L + + +L+LDE SALD R E+L
Sbjct: 128 -----QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML 168
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-25
Identities = 68/189 (35%), Positives = 96/189 (50%), Gaps = 30/189 (15%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
+ ++ F Y ++P+ D L + AGE VA++GPSG GKSTL L+ P SG I
Sbjct: 1 MLALDDVRFSY-GHLPMRFD---LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDL-------MTKIDMERVE 298
L++ D R V ++ Q+ LF+ TVA+NIG L + E+VE
Sbjct: 57 LINGVDH--TASPPAERPVSMLFQENNLFAHLTVAQNIG---LGLSPGLKLNAEQREKVE 111
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
A F++ LP LSGGQRQR+A+AR L + +L+LDE SAL
Sbjct: 112 AAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLVREQPILLLDEPFSAL 160
Query: 359 DS--RSELL 365
D R+E+L
Sbjct: 161 DPALRAEML 169
|
Length = 231 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-25
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 27/190 (14%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ F N+SF+Y + L ++ +I G+ +++G +G GKST+AKL++ + SG I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGY--------RDLMTKIDMERV 297
++ + + + LR+H+G+V Q D V ++ + D M + E +
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEAL 127
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ AD P +LSGGQ+QR+AIA L N SV+ILDEATS
Sbjct: 128 KQVDMLERAD----YEPN-----------ALSGGQKQRVAIAGVLALNPSVIILDEATSM 172
Query: 358 LD--SRSELL 365
LD +R LL
Sbjct: 173 LDPDARQNLL 182
|
Length = 269 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 5e-25
Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 42/155 (27%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
+D ++ I+ GET+ L+G SG GKSTL +L+L L +P SG IL + D+ + + R
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRER 88
Query: 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324
V +L+ K+ + +EF+ P
Sbjct: 89 V--------------------LELLEKVGLP-----------EEFLYRYP---------- 107
Query: 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
LSGGQRQR+ IARAL N +++ DE SALD
Sbjct: 108 -HELSGGQRQRIGIARALALNPKLIVADEPVSALD 141
|
Length = 268 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-25
Identities = 69/190 (36%), Positives = 99/190 (52%), Gaps = 16/190 (8%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
NIS ++ LD +NL + G VAL+GPSG GKSTL +++ L P SG I ++
Sbjct: 5 NISKRFGSFQ--ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQ 62
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
D R+ + R +G V Q LF TV +NI + + K +++ AR E V
Sbjct: 63 DAT--RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK--ARVEELLELV 118
Query: 311 RTLPQGYNTHIGPR-GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
+ +G R + LSGGQRQR+A+ARAL VL+LDE ALD++ +R
Sbjct: 119 QL------EGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSW 172
Query: 370 VDRLLGHHTV 379
+ +L H V
Sbjct: 173 LRKL--HDEV 180
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 6e-25
Identities = 64/196 (32%), Positives = 94/196 (47%), Gaps = 19/196 (9%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N++ +Y LD ++L + G L+GP+G GK+TL ++L L P SG I +D
Sbjct: 5 NLTKRYGKKR--ALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQ 61
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
DV LRR +G + Q+ ++ TV E + Y + I + V+ AR E V
Sbjct: 62 DVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVK--ARVDEVLELV 118
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS-----ELL 365
+ SLSGG R+R+ IA+AL + S+LI+DE T+ LD LL
Sbjct: 119 -----NLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLL 173
Query: 366 VRQAVDR--LLGHHTV 379
DR +L H V
Sbjct: 174 SELGEDRIVILSTHIV 189
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-25
Identities = 62/187 (33%), Positives = 100/187 (53%), Gaps = 15/187 (8%)
Query: 197 YADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI 256
Y +L+ ++L +RAGE +A+ GPSG GKSTL K++ L P SG +L + DV +
Sbjct: 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70
Query: 257 RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRT-LPQ 315
+ ++ R+ V +Q LF TV +N+ + + R R A D R LP
Sbjct: 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQI------RNRRPDRAAALDLLARFALPD 124
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375
+ + + LSGG++QR+A+ R L +L+LDE TSALD + ++ ++ ++
Sbjct: 125 ---SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN----KRNIEEMI- 176
Query: 376 HHTVREK 382
H VRE+
Sbjct: 177 HRYVREQ 183
|
Length = 223 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-24
Identities = 70/206 (33%), Positives = 98/206 (47%), Gaps = 33/206 (16%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----I 246
N++ Y D L +++ I A IGPSG GKSTL + R+ D + C I
Sbjct: 30 NLNLFYGDKQ--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI 87
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGY----------RDLMTKIDM 294
+D ++ + ++D LRR VG+V Q F ++ EN+ Y R L D
Sbjct: 88 RLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVL----D- 142
Query: 295 ERVEHTARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353
E VE + R A DE L + LSGGQ+QRL IARA+ VL+LDE
Sbjct: 143 EAVERSLRGAALWDEVKDRLHEN--------AFGLSGGQQQRLVIARAIAIEPEVLLLDE 194
Query: 354 ATSALDSRSELLVRQAVDRLLGHHTV 379
TSALD S L + + + L +T+
Sbjct: 195 PTSALDPISTLKIEELITELKSKYTI 220
|
Length = 272 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-24
Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 23/201 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
+++F Y D L +++ I VA IGPSG GKST +L R+ D L G I
Sbjct: 8 DVNFWYGDFH--ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI 65
Query: 247 LVDDHDV--QNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID-----MERVEH 299
+D ++ + +++D LR++VG+V Q F ++ EN+ Y + + +RVE
Sbjct: 66 RIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEE 125
Query: 300 TARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
T + A DE L + +LSGGQ+QRL IARA+ + SVL++DE SAL
Sbjct: 126 TLKGAALWDEVKDKLKES--------AFALSGGQQQRLCIARAMAVSPSVLLMDEPASAL 177
Query: 359 DSRSELLVRQAVDRLLGHHTV 379
D S V + + L +T+
Sbjct: 178 DPISTAKVEELIHELKKDYTI 198
|
Length = 250 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-24
Identities = 64/171 (37%), Positives = 91/171 (53%), Gaps = 10/171 (5%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L ++L ++ GE V L+GPSG GK+TL +++ L +G I D+ RL +R
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT--RLPPQKR 76
Query: 264 HVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
G+V Q LF TVA+NI Y + M R E R A + V LP + G
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYG--LKNRGMGRAEVAERVAELLDLV-GLPGSERKYPG 133
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
LSGGQ+QR+A+ARAL + +L+LDE SALD+R +R + +L
Sbjct: 134 ----QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 2e-24
Identities = 53/193 (27%), Positives = 95/193 (49%), Gaps = 29/193 (15%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+++ Y + VL+ ++ ++ GE +A++GP+G GKSTL K +L L P SG I V
Sbjct: 4 DLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61
Query: 252 DVQNIRLDSLRRHVGLVSQDITL---FSGTVAE--------NIGYRDLMTKIDMERVEHT 300
++ R + +G V Q ++ F +V + + G ++K D +V+
Sbjct: 62 PLEKER-----KRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEA 116
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
E + IG LSGGQ+QR+ +ARAL Q+ +L+LDE + +D
Sbjct: 117 LERVGLSELA-------DRQIG----ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165
Query: 361 RSELLVRQAVDRL 373
+++ + + + L
Sbjct: 166 KTQEDIYELLREL 178
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-24
Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 21/175 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S + + L ++L + G+ ++GP+G GKS L + + P SG IL++
Sbjct: 5 NLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGK 61
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTARTANA 306
D+ N L +R + V Q+ LF TV +NI Y R + K +V A
Sbjct: 62 DITN--LPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGI 119
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
D + P+ +LSGG++QR+AIARAL N +L+LDE SALD R
Sbjct: 120 DHLLNRKPE-----------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 73/190 (38%), Positives = 101/190 (53%), Gaps = 28/190 (14%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD---HDVQNIRLDS 260
LD ++L I++GE VAL+GPSG GKSTL +++ L P +G I ++ DV N+
Sbjct: 17 ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--V 74
Query: 261 LRRHVGLVSQDITLFSG-TVAENIGY-----RDLMTKIDM-ERVEHTARTANADEFVRTL 313
R VG V Q LF TVA+NI + ++ ++ ++ RVE R +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY 134
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSEL--LVRQA 369
P + LSGGQRQR+A+ARAL VL+LDE ALD+ R EL +R+
Sbjct: 135 P-----------AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183
Query: 370 VDRLLGHHTV 379
DR LG TV
Sbjct: 184 HDR-LGVTTV 192
|
Length = 345 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 2e-24
Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 17/185 (9%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F N+S + VL ++L+I GE V +IGPSG GKSTL + + +L + SG ++
Sbjct: 2 IEFKNVSKHFGPTQ--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 248 VDDHDVQNIRLD--SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA 304
VD V + ++D +R+ G+V Q LF T EN+ + L RV ++
Sbjct: 60 VDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPL-------RVRGASK-E 111
Query: 305 NADEFVRTL--PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS-- 360
A++ R L G S LSGGQ+QR+AIARAL +++ DE TSALD
Sbjct: 112 EAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL 171
Query: 361 RSELL 365
R E+L
Sbjct: 172 RHEVL 176
|
Length = 240 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 3e-24
Identities = 65/200 (32%), Positives = 93/200 (46%), Gaps = 33/200 (16%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+SF+Y LD ++ +R G VAL+GP+G GKSTL LL RLY G I V H
Sbjct: 6 GLSFRYGARR--ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGH 63
Query: 252 DVQNIRLDSLRRHVGLVSQDITL-FSGTVAENIGY---------RDLMTKID--MERVEH 299
D++ +L R +G+V Q TL +V +N+ Y + +I + R+
Sbjct: 64 DLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGL 122
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
R AD+ VR L+GG R+R+ IARAL ++L+LDE T LD
Sbjct: 123 AER---ADDKVRE---------------LNGGHRRRVEIARALLHRPALLLLDEPTVGLD 164
Query: 360 SRSELLVRQAVDRLLGHHTV 379
S + V L +
Sbjct: 165 PASRAAITAHVRALARDQGL 184
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-24
Identities = 72/197 (36%), Positives = 104/197 (52%), Gaps = 16/197 (8%)
Query: 188 VKFCNIS--FKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+K NI+ F L+ ++LH+ AG+ +IG SG GKSTL + + L P SG
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 246 ILVDDHDV---QNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTA 301
++VD D+ N L RR +G++ Q L S TV N+ L ++D +
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVA---LPLELDNTPKDEIK 118
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD-- 359
R E + + G P S+LSGGQ+QR+AIARAL N VL+ DEATSALD
Sbjct: 119 RKVT--ELLALVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 360 -SRSELLVRQAVDRLLG 375
++S L + + ++R LG
Sbjct: 175 TTQSILELLKEINRRLG 191
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 99.0 bits (248), Expect = 3e-24
Identities = 54/162 (33%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LR 262
+L ++L + GE VAL+G +G GK+TL K ++ L P SG I D D+ + R
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 263 RHVGLVSQDITLFSG-TVAENI---GYRDLMTKI--DMERVEHTARTANADEFVRTLPQG 316
+G V + +F TV EN+ Y K +ERV + F R L +
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVY--------ELFPR-LKER 125
Query: 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
+LSGG++Q LAIARAL +L+LDE + L
Sbjct: 126 RKQ----LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL 163
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 8e-24
Identities = 60/180 (33%), Positives = 82/180 (45%), Gaps = 19/180 (10%)
Query: 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--LD 259
P VL LN GE +AL+G +G GKSTL L L P SG +L+D + R L
Sbjct: 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLL 64
Query: 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMERVEHTARTA----NADEFVRTL 313
R+ VGLV QD LF+ V +++ + L + VE R A A
Sbjct: 65 ERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP 124
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
LSGG+++R+AIA A+ VL+LDE T+ LD + + RL
Sbjct: 125 TH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL 173
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-23
Identities = 103/378 (27%), Positives = 173/378 (45%), Gaps = 38/378 (10%)
Query: 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVK 63
Q+ V S + SL+ L+ P +I+ +++K++K+ +NEVL A+ VK
Sbjct: 438 QLGVASLIGSLMLVLMFPIQTFIIS----KMQKLTKEGLQRTDKRIGLMNEVLAAMDTVK 493
Query: 64 ANNAEMCESARFRRLAHSDLCELLKKRKMKAL-------IPQTVQLIYFGALFILCGGSL 116
E ++ + + +L K + + A IP V ++ FG +F L GG L
Sbjct: 494 CYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFG-VFTLLGGDL 552
Query: 117 LVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKP 176
+F SL + + +FM+ + + +A N +++RL +L + +V+
Sbjct: 553 -TPARAFTSLSLFAVLRFPLFMLPNL--ITQAVN----ANVSLKRLEELLLAEERVLLPN 605
Query: 177 DAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236
+ +K S+ P L +NL + G VA++G +G GK++L +L
Sbjct: 606 PPLEPGLPAISIKNGYFSWDSKAERP-TLSNINLDVPVGSLVAIVGSTGEGKTSLISAML 664
Query: 237 RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296
P S +V +R V V Q +F+ TV +NI + + D ER
Sbjct: 665 GELPPRSDASVV------------IRGTVAYVPQVSWIFNATVRDNILFG---SPFDPER 709
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
E + LP G T IG RG ++SGGQ+QR+++ARA+Y NS V I D+ S
Sbjct: 710 YERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLS 769
Query: 357 ALDSRSELLVRQAVDRLL 374
ALD+ + RQ D+ +
Sbjct: 770 ALDAH---VGRQVFDKCI 784
|
Length = 1622 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 1e-23
Identities = 63/187 (33%), Positives = 99/187 (52%), Gaps = 14/187 (7%)
Query: 188 VKFCNISFKYADNMPL---VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+K N++ Y + P LD +N+ I GE V LIG +G GKSTL + L L P SG
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 245 CILVDDHDV--QNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVEHT 300
I++D D+ + ++L +R+ VGLV Q + LF T+ ++I + + + E +E+
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD- 359
+ A + + Y + LSGGQ++R+AIA + +LILDE T+ LD
Sbjct: 123 VKRA-----MNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
Query: 360 -SRSELL 365
R E+L
Sbjct: 178 KGRDEIL 184
|
Length = 287 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 2e-23
Identities = 67/199 (33%), Positives = 96/199 (48%), Gaps = 21/199 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----I 246
N++ Y L + + L I + A IGPSG GKST+ + RL D + G +
Sbjct: 15 NLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV 72
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGY--RDLMTKIDM-ERVEHTA 301
++ +D +RR +G+V Q F ++ +NI Y R K DM E VE +
Sbjct: 73 TFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSL 132
Query: 302 RTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
R A DE L Q G SLSGGQ+QRL IARA+ V+++DE SALD
Sbjct: 133 RQAALWDEVKDKLKQS--------GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP 184
Query: 361 RSELLVRQAVDRLLGHHTV 379
S L + + + L +T+
Sbjct: 185 ISTLRIEELMHELKEQYTI 203
|
Length = 264 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 3e-23
Identities = 54/180 (30%), Positives = 77/180 (42%), Gaps = 43/180 (23%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLL--LRLYDPLSGCILVDDHDVQNIRLDSL 261
+L ++ + GE A++GPSG GKSTL L R +SG +L++ + S
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGR---PLDKRSF 80
Query: 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320
R+ +G V QD L TV E + + +
Sbjct: 81 RKIIGYVPQDDILHPTLTVRETLMFAAKL------------------------------- 109
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL-LGHHTV 379
LSGG+R+R++IA L N S+L LDE TS LDS S L V + RL T+
Sbjct: 110 -----RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTI 164
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 4e-23
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 16/168 (9%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSL 261
++ +L + GE ++G SG GKSTL +LL RL +P G ILVD D+ + L L
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 262 RRH-VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLP-QGYN 318
RR + +V Q L TV EN+ + ++++ V R A E + + +GY
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAF-----GLEVQGVPKAEREERALEALELVGLEGYA 158
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSEL 364
+ LSGG +QR+ +ARAL + +L++DEA SALD R+E+
Sbjct: 159 DK---YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203
|
Length = 386 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 7e-23
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL--- 261
++ +L I GE ++G SG GKST ++L RL +P +G I +D ++ L
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 262 -RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA----NADEFVRTLPQ 315
R+ +G+V Q LF T+ +N + + + A +E+ P
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD 128
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
LSGG +QR+ +ARAL +L++DEA SALD
Sbjct: 129 -----------ELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 8e-23
Identities = 62/185 (33%), Positives = 90/185 (48%), Gaps = 24/185 (12%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
V+ I F Y + P+ D L GE A++GPSG GKSTL L+ P SG +L
Sbjct: 1 VRLDKIRFSYGE-QPMHFD---LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTAR 302
++ DV R V ++ Q+ LF+ TV +N+G +T D + +E
Sbjct: 57 INGVDVTA--APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALA 114
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS-- 360
+ LP LSGG+RQR+A+AR L ++ VL+LDE +ALD
Sbjct: 115 RVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 361 RSELL 365
R+E+L
Sbjct: 164 RAEML 168
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 8e-23
Identities = 66/182 (36%), Positives = 90/182 (49%), Gaps = 25/182 (13%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--PLS---GCI 246
+SF Y D L ++L + ALIGPSG GKST + L R+ D P + G I
Sbjct: 11 GLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI 68
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGY-------RDLMTKIDMERV 297
L+D ++ + +D LRR VG+V Q F ++ EN+ Y +D ERV
Sbjct: 69 LLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKD--KAYLAERV 126
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
E + R A + V+ + LSGGQ+QRL IARAL VL++DE SA
Sbjct: 127 ERSLRHAALWDEVKD-------RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179
Query: 358 LD 359
LD
Sbjct: 180 LD 181
|
Length = 253 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 1e-22
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 15/178 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI---RLDS 260
VL +NL I GE V L GPSG GK+TL L+ L G + V ++ L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 261 LRRHVGLVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
LRR++G + Q L T +N+ M + + A + + G
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNV----QMALELQPNLSYQEARERARAMLEAV--GLGD 133
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS-----ELLVRQAVDR 372
H+ +LSGGQ+QR+AIARAL +++ DE T+ALDS+S EL+ + A ++
Sbjct: 134 HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 1e-22
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 24/181 (13%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ I+ ++ + D ++L ++ GE AL+G +G GKSTL K+L LY P SG I
Sbjct: 5 LEMRGITKRFPGV--VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62
Query: 248 VDDHDVQNIRL----DSLRRHVGLVSQDITLFSG-TVAENI--GYRDL-MTKIDMERVEH 299
VD + +R+ D++R +G+V Q L TVAENI G ID +
Sbjct: 63 VDG---KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQAR- 118
Query: 300 TARTANADEFVRTLPQGYNTHIGP--RGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
++ L + Y + P + + LS G++QR+ I +ALY+ + +LILDE T+
Sbjct: 119 --------ARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAV 170
Query: 358 L 358
L
Sbjct: 171 L 171
|
Length = 501 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 2e-22
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 9/170 (5%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
+ ++ GE L+G +G GK+TL +++ L P SG + +D D +RR
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRK 76
Query: 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
+G++ + L++ T EN+ Y + + R E AR A + + ++
Sbjct: 77 IGVLFGERGLYARLTARENLKYFARLN--GLSRKEIKARIAELSKRL-----QLLEYLDR 129
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
R S G +Q++AIARAL + S+L+LDE TS LD R+ + +L
Sbjct: 130 RVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL 179
|
Length = 245 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 3e-22
Identities = 67/165 (40%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV--------QN 255
VL ++L ++ GE VA+IGPSG GK+TL + + L P +G I V D + Q
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 256 IRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLP 314
+ LR+HVG V Q+ LF TV ENI ++ K + E TAR A E + +
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK-GEPKEEATAR---ARELLAKVG 133
Query: 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
PR LSGGQ+QR+AIARAL V++ DE TSALD
Sbjct: 134 LAGKETSYPR--RLSGGQQQRVAIARALAMRPEVILFDEPTSALD 176
|
Length = 250 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 4e-22
Identities = 63/179 (35%), Positives = 92/179 (51%), Gaps = 20/179 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VLD ++L +R G V L+GP+G GK+TL + + P +G +LV DV+ + + R
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 264 HVGLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRT-----LPQGY 317
V V QD +L F V ++M R H +R E R + +
Sbjct: 78 RVASVPQDTSLSFEFDVR---------QVVEMGRTPHRSRFDTWTETDRAAVERAMERTG 128
Query: 318 NTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALD----SRSELLVRQAVD 371
R +SLSGG+RQR+ +ARAL Q + VL+LDE T++LD R+ LVR+ VD
Sbjct: 129 VAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD 187
|
Length = 402 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 5e-22
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 12/184 (6%)
Query: 195 FKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL---LRLYDPLSGCILVDDH 251
K + +L+ ++LH+ +G+ +A++G SG GK+TL + + SG IL +
Sbjct: 13 AKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG- 71
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
Q + D ++ V V QD L G TV E + Y + + R A E V
Sbjct: 72 --QPRKPDQFQKCVAYVRQDDILLPGLTVRETLTY---TAILRLPRKSSDAIRKKRVEDV 126
Query: 311 RTLPQGYNTHIG-PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
L T IG +SGG+R+R++IA L + VLILDE TS LDS + L +
Sbjct: 127 L-LRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST 185
Query: 370 VDRL 373
+ +L
Sbjct: 186 LSQL 189
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 7e-22
Identities = 70/203 (34%), Positives = 102/203 (50%), Gaps = 27/203 (13%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCI 246
N++ Y ++ L +NL I E A+IGPSG GKST K L R+ + + +G I
Sbjct: 29 NLNLWYGEDH--ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI 86
Query: 247 LVDDHDV--QNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-------RDLMTKIDMERV 297
L D ++ ++ ++ LR +VG+V Q F ++ +N+ Y +D K E V
Sbjct: 87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKD--KKTLDEIV 144
Query: 298 EHTARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
E + R A DE L H G LSGGQ+QRL IAR L V+++DE TS
Sbjct: 145 EKSLRGAAIWDELKDRL------HDNAYG--LSGGQQQRLCIARCLAIEPDVILMDEPTS 196
Query: 357 ALDSRSELLVRQAVDRLLGHHTV 379
ALD S L V + V L +++
Sbjct: 197 ALDPISTLKVEELVQELKKDYSI 219
|
Length = 271 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (242), Expect = 8e-22
Identities = 102/389 (26%), Positives = 175/389 (44%), Gaps = 56/389 (14%)
Query: 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVK 63
Q+ V S SLI L+IP L++ ++RK++K+ +NE+L ++ VK
Sbjct: 438 QLGVASLFGSLILFLLIPLQTLIV----RKMRKLTKEGLQWTDKRVGIINEILASMDTVK 493
Query: 64 ANNAEMCESARFRRLAHSDLCELLKKRKMKAL-------IPQTVQLIYFGALFILCGGSL 116
E +R + + + +L K + + A IP V L+ FG +F+L GG L
Sbjct: 494 CYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFG-VFVLLGGDL 552
Query: 117 LVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIE-- 174
+F SL + + S P+ + ++ +++R+ +L + +++
Sbjct: 553 -TPARAFTSLSLFAVLRS------PLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN 605
Query: 175 ---KPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTL 231
+P A ++ NG S+ + P L +NL I G VA++G +G GK++L
Sbjct: 606 PPLQPGAPAISIKNG-----YFSWDSKTSKP-TLSDINLEIPVGSLVAIVGGTGEGKTSL 659
Query: 232 AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK 291
+L +V +R V V Q +F+ TV ENI + +
Sbjct: 660 ISAMLGELSHAETSSVV------------IRGSVAYVPQVSWIFNATVRENILFG---SD 704
Query: 292 IDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347
+ ER ++ TA + D P T IG RG ++SGGQ+QR+++ARA+Y NS
Sbjct: 705 FESERYWRAIDVTALQHDLDLL----PGRDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760
Query: 348 VLILDEATSALDSRSELLVRQAVDRLLGH 376
+ I D+ SALD+ + Q D +
Sbjct: 761 IYIFDDPLSALDAH---VAHQVFDSCMKD 786
|
Length = 1495 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 8e-22
Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 12/156 (7%)
Query: 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI---RLDSLRRH- 264
+L +R GE ++G SG GKSTL + + RL +P SG +L+D D+ + L LRR
Sbjct: 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103
Query: 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
+ +V Q L TV EN+ + ++++ V R A E + + H P
Sbjct: 104 ISMVFQSFALLPHRTVLENVAF-----GLEVQGVPRAEREERAAEALELVGLEGWEHKYP 158
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
LSGG +QR+ +ARAL + +L++DEA SALD
Sbjct: 159 D--ELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 9e-22
Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 20/178 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ + Y D L +N GE VAL+GP+G GKSTL + P SG +L+
Sbjct: 6 DLKYSYPDGT-EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64
Query: 252 DVQ--NIRLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVEHTARTA--- 304
++ L +R+ VG+V Q D LF+ TV E++ + L + E VE + A
Sbjct: 65 PIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKA 124
Query: 305 -NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ F P H LSGGQ++R+AIA L +++LDE TS LD
Sbjct: 125 VGMEGFENKPPH----H-------LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPM 171
|
Length = 275 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 1e-21
Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 20/160 (12%)
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD----HDVQNIRLDSLRRHVGLVSQ 270
E + G SG GKSTL + + L P G I+++ + I L +R +GLV Q
Sbjct: 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ 82
Query: 271 DITLFSG-TVAENI--GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327
LF V EN+ G + + D V+ D + P
Sbjct: 83 QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQ----------- 131
Query: 328 LSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSELL 365
LSGG++QR+A+ARAL +L+LDE SALD R +LL
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLL 171
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 2e-21
Identities = 63/165 (38%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL+ ++L I +G+ VAL+GPSG GK+TL +++ L SG I DV RL + R
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS--RLHARDR 74
Query: 264 HVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
VG V Q LF TV +NI + + + R E A + + L H+
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTV----LPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 323 PR-GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSEL 364
R + LSGGQ+QR+A+ARAL +L+LDE ALD+ R EL
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKEL 175
|
Length = 353 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 2e-21
Identities = 64/164 (39%), Positives = 85/164 (51%), Gaps = 12/164 (7%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-- 261
VL ++L I AGE VA++G SG GKSTL +L L P SG V DV + D+L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 262 --RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
R H G + Q L S T A+N+ + +E R A E ++ L G
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG-----LERKQRLLRAQELLQRL--GLE 135
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
+ + S LSGGQ+QR++IARAL V++ DE T ALDS S
Sbjct: 136 DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
|
Length = 648 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 2e-21
Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 33/196 (16%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LR 262
V++ ++L ++ GE V L+GP+G GK+T +++ L P SG IL+D D+ + + R
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74
Query: 263 RHVGLVSQDITLFSG-TVAENIG----YRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
+G + Q+ ++F TV ENI R L K E++E +EF
Sbjct: 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEEL-----LEEF-------- 121
Query: 318 NTHIGP----RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSEL--LVRQA 369
HI + SSLSGG+R+R+ IARAL N L+LDE + +D + ++ +++
Sbjct: 122 --HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL 179
Query: 370 VDRLLG----HHTVRE 381
DR +G H VRE
Sbjct: 180 KDRGIGVLITDHNVRE 195
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 2e-21
Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 15/191 (7%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+ + D +L+ ++ +RAGE + GPSG GKSTL K++ L P SG +L +
Sbjct: 12 NVGYLAGDAK--ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311
D+ ++ + R+ V +Q TLF TV +N+ + +I ++ + + + F
Sbjct: 70 DISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFP---WQIRNQQPDPAIFLDDLERF-- 124
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
LP T + + LSGG++QR+++ R L VL+LDE TSALD ++ V + +
Sbjct: 125 ALPD---TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII- 180
Query: 372 RLLGHHTVREK 382
H VRE+
Sbjct: 181 ----HRYVREQ 187
|
Length = 225 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 3e-21
Identities = 54/160 (33%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
LD ++ +R GE LIGP+G GK+TL L+ P SG +L D D+ + + R
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74
Query: 264 H-VGLVSQDITLFSG-TVAENI--------GYRDLMTKIDMERVEHTARTANADEFVRTL 313
+G Q LF TV EN+ G L+ + E E R E V L
Sbjct: 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVG-L 133
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353
+ G LS GQ++RL IARAL + +L+LDE
Sbjct: 134 ADLADRPAG----ELSYGQQRRLEIARALATDPKLLLLDE 169
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 4e-21
Identities = 67/191 (35%), Positives = 90/191 (47%), Gaps = 25/191 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR------ 257
VLD LN + AGE VALIGPSG GKST+ ++L+ L G I V+ + ++
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 258 -------LDSLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEF 309
L +R +G+V Q LF TV +N+ ++ M R E R +
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL-GMARAEAEKRAMELLDM 133
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR--SELLVR 367
V G + LSGGQ+QR+AIARAL V++ DE TSALD E+L
Sbjct: 134 V-----GLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL-- 186
Query: 368 QAVDRLLGHHT 378
V R L
Sbjct: 187 -NVIRRLASEH 196
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 5e-21
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 18/160 (11%)
Query: 220 LIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-T 278
L+GPSG GK+TL +LL P SG I++D DV N+ RH+ +V Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV--PPHLRHINMVFQSYALFPHMT 58
Query: 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS----LSGGQRQ 334
V EN+ + M K+ R E R A V + LSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVP--RAEIKPRVLEALRLV---------QLEEFADRKPHQLSGGQQQ 107
Query: 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374
R+A+ARAL +L+LDE SALD + ++ + +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 5e-21
Identities = 60/187 (32%), Positives = 91/187 (48%), Gaps = 19/187 (10%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----ILVDDHDVQNIRLD 259
L + + I ALIGPSG GKSTL + R+ D + GC IL + ++ + D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 260 --SLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDMER-VEHTARTANADEFVRT 312
+LRR +G+V Q F ++ EN+ Y K ++ VE + + A + V+
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKD 141
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372
+ SLSGGQ+QRL IAR L N V+++DE SALD + + ++
Sbjct: 142 -------RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194
Query: 373 LLGHHTV 379
L +TV
Sbjct: 195 LKKEYTV 201
|
Length = 253 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 6e-21
Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 24/201 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
N+ Y +N L +NL I A + ALIGPSG GKSTL + L R+ D ++G +
Sbjct: 8 NLDLFYGENQ--ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL 65
Query: 247 LVDDHDV-QNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-------RDLMTKIDMERVE 298
+D D+ NI + LR VG+V Q F ++ EN+ Y +D K+ E VE
Sbjct: 66 TMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKD--KKVLDEVVE 123
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
+ R A + V+ +H LSGGQ+QRL IAR + V+++DE TSAL
Sbjct: 124 RSLRGAALWDEVKDR---LKSH----AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSAL 176
Query: 359 DSRSELLVRQAVDRLLGHHTV 379
D + + + ++ L ++T+
Sbjct: 177 DPIATHKIEELMEELKKNYTI 197
|
Length = 249 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 6e-21
Identities = 68/179 (37%), Positives = 94/179 (52%), Gaps = 19/179 (10%)
Query: 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----ILVDDHDVQNIRLD--SLRRH 264
I G+ ALIGPSG GKST+ + L R+ D + GC +L D D+ + R+D +RR
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 265 VGLVSQDITLFSGTVAENI--GYRDLMTKIDM-ERVEHTARTANA-DEFVRTLPQGYNTH 320
+G+V Q F ++ ENI G R DM E VE + R A DE L +
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNE----- 150
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTV 379
G SLSGGQ+QRL IAR + V+++DE SALD S L + + + L + T+
Sbjct: 151 ---SGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTI 206
|
Length = 269 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 8e-21
Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 20/177 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S + +LD ++L +R GE VA++GP+G GKSTL + L P SG + ++
Sbjct: 7 NLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGR 64
Query: 252 DVQNIRLDSLRRHVGLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
+ + L R ++ Q +L F TV E + M R H A D V
Sbjct: 65 PLADWSPAELARRRAVLPQHSSLSFPFTVEEVVA---------MGRAPHGLSRAEDDALV 115
Query: 311 RT-LPQGYNTHIGPRG-SSLSGGQRQRLAIARALYQNSS------VLILDEATSALD 359
L Q H+ R LSGG++QR+ +AR L Q L+LDE TSALD
Sbjct: 116 AAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD 172
|
Length = 258 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 9e-21
Identities = 65/188 (34%), Positives = 98/188 (52%), Gaps = 30/188 (15%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+K +I++ Y ++P+ + +L + GE VA++GPSG GKSTL L+ P SG +
Sbjct: 2 LKLTDITWLY-HHLPM---RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLT 57
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDL-------MTKIDMERVEH 299
++ D + RR V ++ Q+ LFS TVA+NIG L + E++
Sbjct: 58 LNGQD--HTTTPPSRRPVSMLFQENNLFSHLTVAQNIG---LGLNPGLKLNAAQREKLHA 112
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
AR ++ + LP LSGGQRQR+A+AR L + +L+LDE SALD
Sbjct: 113 IARQMGIEDLLARLP-----------GQLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
Query: 360 S--RSELL 365
R E+L
Sbjct: 162 PALRQEML 169
|
Length = 232 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 1e-20
Identities = 59/182 (32%), Positives = 81/182 (44%), Gaps = 29/182 (15%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
I+ Y + L + L GET+ L+GPSG GKS+L ++L L P SG + + +
Sbjct: 7 GINCFYGAHQ--ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN 64
Query: 252 --------DVQNIRLDSLRRHVGLVSQDITLFSG-TVAEN-----IGYRDLMTKIDMERV 297
+ IR LRR+VG+V Q L+ TV +N L + R
Sbjct: 65 HFDFSKTPSDKAIRE--LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARA 122
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
E + P LSGGQ+QR+AIARAL VL+ DE T+A
Sbjct: 123 EKLLERLRLKPYADRFPL-----------HLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171
Query: 358 LD 359
LD
Sbjct: 172 LD 173
|
Length = 242 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 1e-20
Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 22/195 (11%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LS 243
G ++ ++ Y N VLD L+L I AGE +ALIG SG GK+TL + + L+
Sbjct: 4 GGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY---RDLMTKIDM-ERVE 298
G I + D D+ + +R + L+ Q+ LF V +N+ + M K D+ ERV
Sbjct: 62 GRIAIADRDLTH--APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA 119
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
+ + LP + LSGG +QR+AIARA+ VL+LDE SAL
Sbjct: 120 DALKLVGLGDAAAHLP-----------AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 359 DSRSELLVRQAVDRL 373
D+ +R+ + L
Sbjct: 169 DANIRANMREEIAAL 183
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 2e-20
Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 19/173 (10%)
Query: 219 ALIGPSGGGKSTLAKLLLRLYDPLSGC-----ILVDDHDV--QNIRLDSLRRHVGLVSQD 271
ALIGPSG GKST + L R+ D + IL D+ + I + +R+H+G+V Q
Sbjct: 50 ALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQR 109
Query: 272 ITLFSGTVAENIGY---RDLMT--KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGS 326
F+ ++ ENI + R + K+ E VE + + A + V+ +
Sbjct: 110 PNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSAL 162
Query: 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTV 379
+LSGGQ+QRL IARA+ +L++DE SALD S + + + + L ++T+
Sbjct: 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTI 215
|
Length = 267 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 2e-20
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 11/193 (5%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI- 246
V+ N F + + L +N+ I G+ ++G G GKS+L +L L G +
Sbjct: 1 VQVTNGYFSWGSGLA-TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVH 59
Query: 247 ----LVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTAR 302
+ + R + R V +Q L + TV ENI + K +R +
Sbjct: 60 WSNKNESEPSFEATRSRN-RYSVAYAAQKPWLLNATVEENITFGSPFNK---QRYKAVTD 115
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR- 361
+ + LP G T IG RG +LSGGQRQR+ +ARALYQN++++ LD+ SALD
Sbjct: 116 ACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHL 175
Query: 362 SELLVRQAVDRLL 374
S+ L+++ + + L
Sbjct: 176 SDHLMQEGILKFL 188
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 2e-20
Identities = 61/164 (37%), Positives = 83/164 (50%), Gaps = 15/164 (9%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI---RLDS 260
+D ++L +R G+T+ L+G SG GKSTL LLRL P G I D D+ + +
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL-IPSQGEIRFDGQDIDGLSRKEMRP 360
Query: 261 LRRHVGLVSQDITLFSG-----TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQ 315
LRR + +V QD + TV + I + + + E R A E V P
Sbjct: 361 LRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPA 418
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
N + P SGGQRQR+AIARAL +++LDE TSALD
Sbjct: 419 TRNRY--PH--EFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 3e-20
Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 12/174 (6%)
Query: 194 SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253
++ VL ++L I GE VA++G SG GKSTL LL L +P SG +L + +
Sbjct: 10 RYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSL 69
Query: 254 QNI---RLDSLR-RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADE 308
+ LR + +G + Q L T EN+ L+ K ++ E R E
Sbjct: 70 SKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVK--EAKERAYEMLE 127
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
V G I R S LSGG+RQR+AIARAL S+++ DE T LD+ +
Sbjct: 128 KV-----GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 3e-20
Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 19/188 (10%)
Query: 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----ILVDDHDVQNIR 257
L L ++L I A + +A IGPSG GKSTL + R+ D + G +L D ++ + +
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93
Query: 258 LDS--LRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDMERVEHTARTANADEFVR 311
++S LRR VG+V Q F ++ ENI + +D E VE + R A E V+
Sbjct: 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLD-ELVEDSLRRAAIWEEVK 152
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
+ +G++LSGGQ+QRL IARA+ VL++DE SALD S V +
Sbjct: 153 D-------KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL 205
Query: 372 RLLGHHTV 379
L +T+
Sbjct: 206 ELKEQYTI 213
|
Length = 274 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-20
Identities = 60/192 (31%), Positives = 92/192 (47%), Gaps = 26/192 (13%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
NIS K+ D ++LD LNL I G+ A+IG SG GKSTL ++ L SG + ++
Sbjct: 3 NISKKFGDK--VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 252 DVQNIR----LDSLRRHVGLVSQDITLF-SGTVAENI----GYRDLMTKIDMERVEHTAR 302
+ + R +G + Q+ L + TV EN+ Y+ L K E+ +
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEAL- 119
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
E V L I LSGG++QR+A+ARA+ + +++ DE T +LD ++
Sbjct: 120 -----EKVG-LNLKLKQKI----YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN 169
Query: 363 ELLVRQAVDRLL 374
R V LL
Sbjct: 170 ----RDEVLDLL 177
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 4e-20
Identities = 64/174 (36%), Positives = 91/174 (52%), Gaps = 20/174 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDS 260
VL+ ++L +++GETVAL+G SG GKSTLA+LL+ L P G + + + +
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 261 LRRHVGLVSQD-ITLFS--GTVAENIG--YRDLMTKIDMERVEHTARTANADEFVRTLPQ 315
RR + +V QD I+ + TV E I R L+ +++ E AR + V
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL---SLDKAERLARASEMLRAVDLDD- 142
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
+ + R LSGGQ QR+ +ARAL +LILDEA S LD LV QA
Sbjct: 143 ---SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD-----LVLQA 188
|
Length = 268 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (218), Expect = 4e-20
Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 21/204 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-- 245
+K ++F Y + VL +N+ + A+IGPSG GKSTL + L R+ D +SG
Sbjct: 5 IKIRGVNFFYHKHQ--VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARL 62
Query: 246 ---ILVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM-----E 295
+L+D+ ++ + LD +LR+ VG+V Q F ++ +N+ + M E
Sbjct: 63 EGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDE 122
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
VE + R A + V+ N H G +LSGGQ+QRL IAR L V+++DE
Sbjct: 123 VVEKSLRQAALWDEVKD-----NLH--KSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 356 SALDSRSELLVRQAVDRLLGHHTV 379
SALD S + + + + L ++T+
Sbjct: 176 SALDPVSTMRIEELMQELKQNYTI 199
|
Length = 251 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 4e-20
Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 22/188 (11%)
Query: 187 DVKFCNISFKYADNMP-LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+VK N++FKY ++ L+ ++ H++ GE +++IG +G GKST +L+ L + SG
Sbjct: 6 EVK--NLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGY----RDLMTKIDMERVEH 299
I++D + + +R +G+V Q D TV +++ + + + + ERV
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNE 123
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+F P + LSGGQ+QR+AIA A+ ++ILDEATS LD
Sbjct: 124 ALELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172
Query: 360 --SRSELL 365
R EL+
Sbjct: 173 PEGRLELI 180
|
Length = 279 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 4e-20
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VLD ++LH++ GE +GP+G GK+T K++L L P SG I D Q R
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEALR 72
Query: 264 HVG-LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
+G L+ + T EN+ + I +R++ G
Sbjct: 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV-----------GLKDSAK 121
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ S G +QRL IA AL N +LILDE T+ LD
Sbjct: 122 KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 5e-20
Identities = 56/179 (31%), Positives = 81/179 (45%), Gaps = 26/179 (14%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N++ Y +L+ L+L + G+ ALIGP+G GKSTL K RL P SG + + D
Sbjct: 7 NLTVGYGTKR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK 64
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY----------RDLMTKIDMERVEHT 300
+ + L R + L+ Q G TV E + Y R ++ D RV
Sbjct: 65 PISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGR--LSAEDNARVNQA 122
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ R + LSGGQRQR +A L Q++ V++LDE T+ LD
Sbjct: 123 MEQTRINHLADR-----------RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
|
Length = 255 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 5e-20
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 9/181 (4%)
Query: 194 SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253
F+ +D ++ ++ GE L+GP+G GK+T ++L L +P +G VD DV
Sbjct: 10 RFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV 69
Query: 254 QNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRT 312
++ RR +G VS L+ T EN+ Y + ++ TA +E
Sbjct: 70 VKEPAEARRR-LGFVSDSTGLYDRLTARENLEYFA-----GLYGLKGDELTARLEELADR 123
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372
L G + R S G RQ++AIARAL + VL+LDE T+ LD + +R+ + +
Sbjct: 124 L--GMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQ 181
Query: 373 L 373
L
Sbjct: 182 L 182
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 7e-20
Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 27/190 (14%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL----------VDDHDVQ 254
LD +++ I + A+IGPSG GKST + + R+ D + + V D DV
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 255 NIRLDSLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDMERVEHTARTANA-DEF 309
+ +LRR +G+V Q F ++ +N+ Y + ID ERVE + R A DE
Sbjct: 115 PV---ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID-ERVEESLRRAALWDEV 170
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
+ G LSGGQ+QRL IARA+ + V+++DE SALD + +
Sbjct: 171 --------KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL 222
Query: 370 VDRLLGHHTV 379
++ L +TV
Sbjct: 223 IEELAEEYTV 232
|
Length = 285 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 8e-20
Identities = 61/182 (33%), Positives = 89/182 (48%), Gaps = 28/182 (15%)
Query: 192 NISFKYADN----MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
N+S+KY N L LD +NL ++ GE + ++G +G GKST+AK + L P G +
Sbjct: 9 NVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVY 68
Query: 248 VDDHDVQNIR-LDSLRRHVGLVSQD------ITLFSGTVA---ENIGYRDLMTKIDMERV 297
VD D + L +R G+V Q+ T+ VA EN+G + ERV
Sbjct: 69 VDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIR---ERV 125
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ + + E+ R P H+ LSGGQ+QR+AIA L +I DE T+
Sbjct: 126 DESLKKVGMYEYRRHAP-----HL------LSGGQKQRVAIAGILAMRPECIIFDEPTAM 174
Query: 358 LD 359
LD
Sbjct: 175 LD 176
|
Length = 280 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 8e-20
Identities = 59/193 (30%), Positives = 102/193 (52%), Gaps = 25/193 (12%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LR 262
V++ ++L + +GE V L+GP+G GK+T +++ L P SG IL+DD D+ + + R
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78
Query: 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTAN-ADEFVRTLPQGYNTH 320
+G + Q+ ++F TV +NI + + D+++ E +EF H
Sbjct: 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF----------H 128
Query: 321 IGP----RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSEL--LVRQAVDR 372
I + SLSGG+R+R+ IARAL N ++LDE + +D + ++ +++ DR
Sbjct: 129 ITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR 188
Query: 373 LLG----HHTVRE 381
+G H VRE
Sbjct: 189 GIGVLITDHNVRE 201
|
Length = 243 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (215), Expect = 1e-19
Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 6/188 (3%)
Query: 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS---GC 245
K N++ Y L +N+ I + ALIG SG GKST + R+ D ++ G
Sbjct: 4 KTTNLNLFYGKKQALF--DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL 61
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
+ ++ DV+N + +LR++VG+V Q +F ++ ENI Y + + + E A +
Sbjct: 62 VEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVD 121
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+ V L + + +LSGGQ+QRL IARAL +L+LDE TSALD S +
Sbjct: 122 CLQKV-GLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGV 180
Query: 366 VRQAVDRL 373
+ + + L
Sbjct: 181 IEELLKEL 188
|
Length = 246 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 1e-19
Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 23/205 (11%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL----- 242
++ N S Y + + + + I + A+IGPSG GK+TL + + R+ D +
Sbjct: 4 IEIENFSAYYGEKK--AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV 61
Query: 243 SGCILVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
G I D+ + +LD R+ VG+V Q T F ++ +N+ + R+
Sbjct: 62 EGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFG--------PRIHGV 113
Query: 301 ARTANADEFV-RTLPQG-----YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354
D V +L + + + G+ LSGGQ+QRL IARAL V++LDE
Sbjct: 114 KSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEP 173
Query: 355 TSALDSRSELLVRQAVDRLLGHHTV 379
TSALD + + + ++ L ++T+
Sbjct: 174 TSALDPIATQRIEKLLEELSENYTI 198
|
Length = 250 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 1e-19
Identities = 63/193 (32%), Positives = 93/193 (48%), Gaps = 19/193 (9%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-----GCILVDDHDV--QNIR 257
L +++ I ALIGPSG GKST + L R+ D + G + +D D+ +
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 258 LDSLRRHVGLVSQDITLFSGTVAENIGYR-----DLMTKIDMERVEHTARTANADEFV-R 311
L LR+ VG+V Q F ++ ENI Y D+ T + + R+ DE V R
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGL-LARLLGRDDKDAEDELVER 179
Query: 312 TLPQG-----YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+L Q N + LSGGQ+QRL IAR L + V+++DE SALD + +
Sbjct: 180 SLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKI 239
Query: 367 RQAVDRLLGHHTV 379
++ L +TV
Sbjct: 240 EDLIEELAEEYTV 252
|
Length = 305 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 2e-19
Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 21/163 (12%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-R 262
L ++L + GE VAL+G +G GK+TL K ++ L P SG I+ D D+ + R
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 263 RHVGLVSQDITLFSG-TVAENI---GY---RDLMTKIDMERVEHTARTANADEFVRTLPQ 315
+ V + +F TV EN+ Y + D+E V + F R L +
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEV--------YELFPR-LKE 128
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
N R +LSGG++Q LAIARAL +L+LDE + L
Sbjct: 129 RRNQ----RAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL 167
|
Length = 237 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-19
Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 27/180 (15%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV------------DDH 251
VL ++L + AGE VAL GPSG GKSTL K L Y P SG ILV
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER-VEHTARTANADEFV 310
+V +R R+ +G VSQ + V + +++ + +ER V A A A E +
Sbjct: 83 EVLEVR----RKTIGYVSQFL-----RVIPRVSALEVVAEPLLERGVPREAARARARELL 133
Query: 311 RTL--PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ 368
L P+ H+ P ++ SGG++QR+ IAR + +L+LDE T++LD+ + +V +
Sbjct: 134 ARLNIPERL-WHLPP--ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVE 190
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 2e-19
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L+ L+L I G+ V +IG +G GKSTL + P SG IL+D DV +
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 264 HVGLVSQDI---TLFSGTVAENIGYRDLMTKI-DMERVEHTARTANADEFVRTLPQGYNT 319
+ V QD T T+ EN+ + K + + R ++ E + L G
Sbjct: 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLEN 140
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377
+ R LSGGQRQ L++ A +L+LDE T+ALD ++ V + +++ H
Sbjct: 141 RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEH 198
|
Length = 263 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 3e-19
Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 24/184 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+LD ++L +R GE +A++GP+G GKSTL K L P SG + ++ + + + L R
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 264 HVGLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEH-TARTANADEFV--RTLPQGYNT 319
H ++ Q+ +L F TV E + M R+ H + R DE + + L +
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQ---------MGRIPHRSGREPEEDERIAAQALAATDLS 126
Query: 320 HIGPRG-SSLSGGQRQRLAIARALYQ------NSSVLILDEATSALDSRSEL----LVRQ 368
+ R +LSGG++QR+ +AR L Q + L LDE TSALD + L RQ
Sbjct: 127 GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 369 AVDR 372
Sbjct: 187 LARE 190
|
Length = 259 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 3e-19
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 21/188 (11%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNIRLD 259
L +NL I E A+IGPSG GKST K L + L+G + + ++ ++D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 260 --SLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDM-ERVEHTAR-TANADEFVR 311
LR+++G+V Q F ++ +N+ Y K + E VE + + A DE
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
L + SLSGGQ+QRL IARAL N VL++DE TSALD S + + +
Sbjct: 148 RLHT--------QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL 199
Query: 372 RLLGHHTV 379
+L +T+
Sbjct: 200 KLKEKYTI 207
|
Length = 259 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 3e-19
Identities = 62/194 (31%), Positives = 89/194 (45%), Gaps = 27/194 (13%)
Query: 188 VKFCNISFKYADNMPL---VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+ N+S+ Y P L +NL I G A IG +G GKST+ +LL L+ P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 245 CILVDDHDV----QNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVE 298
+ VDD + +N + +R+ VGLV Q + LF TV +++ + + E E
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 299 HTARTANA-----DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353
AR A + P LSGGQ +R+AIA L +L+LDE
Sbjct: 123 ALAREKLALVGISESLFEKNP-----------FELSGGQMRRVAIAGILAMEPKILVLDE 171
Query: 354 ATSALD--SRSELL 365
T+ LD R EL+
Sbjct: 172 PTAGLDPKGRKELM 185
|
Length = 280 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (216), Expect = 3e-19
Identities = 71/214 (33%), Positives = 106/214 (49%), Gaps = 30/214 (14%)
Query: 164 DLTKFKSKVIEKPDAVSLDHINGDV-KFCNISFKYADNMPLVLDQLNLHIRAGETVALIG 222
+L +F +K + D + D + +V + N +F Y + VL LNL I+ + A IG
Sbjct: 56 ELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIG 115
Query: 223 PSGGGKSTLAKLLLRLYDPLSGC-------ILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275
PSG GKST + L +L D + G L + + I LR +G+V Q T F
Sbjct: 116 PSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175
Query: 276 SGTVAENIGY---------RDLMTKIDMERVEHTARTANA-DEFVRTLPQGYNTHIGPRG 325
++ +N+ Y R ++ KI VE + ++A DE L + G
Sbjct: 176 EMSIFDNVAYGPRNNGINDRKILEKI----VEKSLKSAALWDEVKDDLDKA--------G 223
Query: 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
++LSGGQ+QRL IARA+ VL++DE TSALD
Sbjct: 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALD 257
|
Length = 329 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 3e-19
Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 12/162 (7%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259
+L + L ++ GETVA++GPSG GKSTL +L L DP SG + + + + R
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 260 SLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
RHVG V Q L + T EN+ +++ A A + + G
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENV-----ALPLELRGESSADSRAGAKALLEAVGLGKR 139
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
P LSGG++QR+A+ARA VL DE T LD
Sbjct: 140 LTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDR 179
|
Length = 228 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 3e-19
Identities = 63/177 (35%), Positives = 90/177 (50%), Gaps = 26/177 (14%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
NI+ ++ N V+D LNL I+ G V L+GPSG GK+T+ +L+ L P G I +D
Sbjct: 11 NITKRFGSNT--VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGE 68
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
DV + + +R + +V Q LF ++ EN+GY M + E E R A E V
Sbjct: 69 DVTHRSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKE--ERKQRVKEALELV 124
Query: 311 -------RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
R + Q +SGGQ+QR+A+ARAL VL+ DE S LD+
Sbjct: 125 DLAGFEDRYVDQ------------ISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 4e-19
Identities = 70/208 (33%), Positives = 106/208 (50%), Gaps = 28/208 (13%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC- 245
DVK NI Y + V D +NL+I A IGPSG GKST+ + L R+++ + G
Sbjct: 6 DVKDLNI---YYGSFHAVED-VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 246 ----ILVDDHDVQNIRLD--SLRRHVGLVSQDITLF-SGTVAENI-------GYRDLMTK 291
+L+D D+ +D ++RR +G+V Q F + ++ +N+ G R+
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRN-KKD 120
Query: 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351
+D E VE + R AN V+ + G LSGGQ+QRL IARA+ VL++
Sbjct: 121 LD-ELVEKSLRGANLWNEVKD-------RLDKPGGGLSGGQQQRLCIARAIAVEPDVLLM 172
Query: 352 DEATSALDSRSELLVRQAVDRLLGHHTV 379
DE SALD S L + ++ L +T+
Sbjct: 173 DEPCSALDPISTLAIEDLINELKQDYTI 200
|
Length = 258 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 5e-19
Identities = 63/190 (33%), Positives = 93/190 (48%), Gaps = 23/190 (12%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-----GCILVDDHDVQNIRL 258
+L +NL I ALIGPSG GKST + L R+ D + G I +D D+ + +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 259 D--SLRRHVGLVSQDITLFSGTVAENIGY------RDLMTKIDMERVEHTARTANA-DEF 309
D LR+ VG+V Q F ++ +N+ Y D I+ ERVE + + A DE
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE-ERVEESLKAAALWDEV 136
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
L + LSGGQ+QRL IAR + + V+++DE SALD S +
Sbjct: 137 KDKLDKS--------ALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL 188
Query: 370 VDRLLGHHTV 379
+ +L +T+
Sbjct: 189 IHKLKEDYTI 198
|
Length = 250 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 5e-19
Identities = 62/176 (35%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS--- 260
VL ++L I GETV L+G SG GKSTLA+LLL L P G + D+ +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 261 LRRHVGLVSQD-ITLFSG--TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
RR V LV QD + + TV + IG L ++ E AR A + V +
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIG-EPLRHLTSLDESEQKARIAELLDMVGLRSE-- 142
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
LSGGQ QR+ IARAL +++LDEA S LD + ++ + + +L
Sbjct: 143 --DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKL 196
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 6e-19
Identities = 61/173 (35%), Positives = 96/173 (55%), Gaps = 25/173 (14%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNIRLD 259
L+ ++L E ALIGPSG GKSTL + + R+ D ++G I+ + H++ + R D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 260 S--LRRHVGLVSQDITLFSGTVAENI-------GYRDLMTKIDMERVEHTARTANA-DEF 309
+ LR+ +G+V Q F ++ EN+ G +D +D E VE + + A+ DE
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKD-KQVLD-EAVEKSLKGASIWDEV 138
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
L +++ +G LSGGQ+QR+ IAR L + +++LDE TSALD S
Sbjct: 139 KDRL---HDSALG-----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPIS 183
|
Length = 252 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 6e-19
Identities = 61/189 (32%), Positives = 94/189 (49%), Gaps = 8/189 (4%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
G + F + +Y + +PLVL ++ I E V ++G +G GKSTL +R+ + G
Sbjct: 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGE 1366
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
I V+ ++ L LRR ++ QD LF GTV +N+ D + V
Sbjct: 1367 IRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV---DPFLEASSAEVWAALELVG 1423
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL-DEATS----ALDS 360
E V + +G ++ + GS+ S GQRQ + +ARAL + S IL DEAT+ ALD
Sbjct: 1424 LRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDR 1483
Query: 361 RSELLVRQA 369
+ + V A
Sbjct: 1484 QIQATVMSA 1492
|
Length = 1560 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 8e-19
Identities = 64/209 (30%), Positives = 92/209 (44%), Gaps = 38/209 (18%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+ KY D + ++ +R GE L+GP+G GK+T K+L L P SG V H
Sbjct: 5 NLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGH 62
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI-------GY--RDLMTKIDMERVEHTA 301
DV +RR +G+V QD+++ T EN+ G + +ID E ++
Sbjct: 63 DVVR-EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERID-ELLDFVG 120
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
AD V+T SGG R+RL IAR+L VL LDE T LD +
Sbjct: 121 LLEAADRLVKT---------------YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ 165
Query: 362 S---------ELLVRQAVDRLLGHHTVRE 381
+ +L + LL H + E
Sbjct: 166 TRAHVWEYIEKLKEEFGMTILLTTHYMEE 194
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 1e-18
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 23/197 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCIL 247
+ F + ++ + GE + ++G SG GKSTLA L+ L SG ++
Sbjct: 12 TVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71
Query: 248 VDDHDVQNIRLDSLR----RHVGLVSQD-ITLFSGT------VAENIGYRDLMTKIDMER 296
+D D+ + +R + + ++ QD +T + + E + ++ +
Sbjct: 72 LDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEAR- 130
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
R E V LP P LSGG RQR+ IA AL +LI DE T+
Sbjct: 131 ----KRAVELLEQVG-LPDPERRDRYPH--QLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 357 ALDSRSELLVRQAVDRL 373
ALD ++ + + L
Sbjct: 184 ALDVTTQAQILDLLKDL 200
|
Length = 539 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 1e-18
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 10/180 (5%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S + +L L+ + GE A++GP+G GK+TL LL + P SG + +
Sbjct: 36 NVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR 93
Query: 252 DVQNIRLDS-LRRHVGLVS--QDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308
LR+ +GLVS ++ I + + + TA A +
Sbjct: 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQ 153
Query: 309 FVRTLPQGYNTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSELL 365
++ L H+ R SLS G+++R+ IARAL ++ +LILDE LD +R +LL
Sbjct: 154 WL--LELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLL 211
|
Length = 257 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 1e-18
Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 18/163 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+D ++L I GE AL+G SG GKSTL ++L P +G I++D D+ ++ +R
Sbjct: 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV--PPYQR 91
Query: 264 HVGLVSQDITLFSG-TVAENIGY---RDLMTKIDM-ERVEHTARTANADEFVRTLPQGYN 318
+ ++ Q LF TV +NI + +D + K ++ RV + EF + P
Sbjct: 92 PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH--- 148
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
LSGGQRQR+A+AR+L + +L+LDE ALD +
Sbjct: 149 --------QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 1e-18
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 38/197 (19%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----- 241
+VK ++SF + +D ++ ++ GE + ++G SG GKS LAK ++ L
Sbjct: 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI 62
Query: 242 LSGCILVDDHDVQNI---RLDSLR-RHVGLVSQD------ITLFSGTVAENIG--YRDLM 289
+ G IL D D+ ++ L +R + + ++ QD + T+ + I R
Sbjct: 63 VGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVM---TIGDQIAEVLRLHG 119
Query: 290 TKIDMERVEHTARTA-------NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342
+ + + A + + +++ P H LSGG RQR+ IA AL
Sbjct: 120 KGLSKKEAKERAIELLELVGIPDPERRLKSYP-----H------ELSGGMRQRVMIAMAL 168
Query: 343 YQNSSVLILDEATSALD 359
N +LI DE T+ALD
Sbjct: 169 ALNPKLLIADEPTTALD 185
|
Length = 316 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 2e-18
Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 39/209 (18%)
Query: 200 NMPLVLDQLNLHIRAGETV-------------ALIGPSGGGKSTLAKLLLRLYD-----P 241
N + L+QLN+H V A+IGPSG GKST+ + + R++D
Sbjct: 2 NNKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 242 LSGCILVDDHDVQNIRLD--SLRRHVGLVSQDITLFSG-TVAENI--GYRDLMTKIDMER 296
++G IL+DD D+ + +D S+RR VG+V Q F ++ +N+ GY+
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYK---------- 111
Query: 297 VEHTARTANADEFVRT------LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350
+ + ADE V + L + LSGGQ+QRL IAR + V++
Sbjct: 112 LNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVIL 171
Query: 351 LDEATSALDSRSELLVRQAVDRLLGHHTV 379
+DE SALD S L + + ++ L +T+
Sbjct: 172 MDEPASALDPISTLKIEELIEELKEKYTI 200
|
Length = 252 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 2e-18
Identities = 65/204 (31%), Positives = 101/204 (49%), Gaps = 21/204 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+K ++SF Y N ++ +++ I + A+IGPSG GKST K L R+ + L G +
Sbjct: 8 IKVKDLSFYY--NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE-LEGPVK 64
Query: 248 VD---DHDVQNI-----RLDSLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDME 295
V+ D QNI ++ LRR +G+V Q F ++ EN+ Y + + D++
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
+ +A A L Q + LSGGQ+QRL IARAL VL++DE
Sbjct: 125 EIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 356 SALDSRSELLVRQAVDRLLGHHTV 379
SALD + + V + + L T+
Sbjct: 179 SALDPIATMKVEELIHSLRSELTI 202
|
Length = 259 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 3e-18
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 21/195 (10%)
Query: 182 DHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241
D+ + + N+S + D L L +LN +R GE + + G SG GK++L + L L+
Sbjct: 387 DNADHGITLENLSLRTPDGQTL-LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW 445
Query: 242 LSGCILVDDHDVQNIRLDSLRRHVGL--VSQDITLFSGTVAENIGYRDLMTKIDMERVEH 299
SG I S+ L + Q L GT+ E + Y + +
Sbjct: 446 GSGRI-------------SMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVA 492
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ L + LSGG++QRLA AR L + LDEATSALD
Sbjct: 493 VLHKVGLGDLAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547
Query: 360 SRSELLVRQAVDRLL 374
+E + Q + L
Sbjct: 548 EETEDRLYQLLKEEL 562
|
Length = 604 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 5e-18
Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 23/201 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
N++ Y + L+ +NL I + ALIGPSG GKST + L R+ D + G +
Sbjct: 9 NLNLWYGEKQ--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV 66
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTA 304
L+D ++ + +D LR+ VG+V Q F ++ +N+ Y R+
Sbjct: 67 LLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYG--------PRIHGIKDKK 118
Query: 305 NADEFVR------TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
D+ V L + LSGGQ+QRL IAR + V+++DE TSAL
Sbjct: 119 ELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSAL 178
Query: 359 DSRSELLVRQAVDRLLGHHTV 379
D S L + + L +T+
Sbjct: 179 DPISTLKIEDLMVELKKEYTI 199
|
Length = 251 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 6e-18
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 21/186 (11%)
Query: 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQNIRLDS- 260
++N I + A+IGPSG GKST + + R+ D + +G ++ D D+ D
Sbjct: 57 KVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116
Query: 261 -LRRHVGLVSQDITLFSGTVAENIGYRDLMTKID-----MERVEHTARTANA-DEFVRTL 313
LR+ +G+V Q F ++ +NI Y + I+ E VE + R A DE L
Sbjct: 117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRL 176
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
+ LSGGQ+QRL +AR L +L+LDE TSALD ++ + + L
Sbjct: 177 DKN--------ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL 228
Query: 374 LGHHTV 379
G +T+
Sbjct: 229 RGSYTI 234
|
Length = 286 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (201), Expect = 8e-18
Identities = 61/178 (34%), Positives = 92/178 (51%), Gaps = 29/178 (16%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNIRLD 259
L ++L E ALIGPSG GKST + L R+ D ++G I + ++ ++D
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 260 --SLRRHVGLVSQDITLFSGTVAENIGY---------RDLMTKIDMERVEHTARTANADE 308
LR+ VG+V Q T F +V +N+ Y ++L ID +RVE + + A
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKEL---ID-QRVEESLKQA---- 131
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSEL 364
+ + ++ + SGGQ+QR+ IARAL V++LDE TSALD S SE+
Sbjct: 132 ---AIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI 186
|
Length = 251 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (201), Expect = 9e-18
Identities = 64/186 (34%), Positives = 97/186 (52%), Gaps = 26/186 (13%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
+++ Y D + +NL ++ G ALIGPSG GK+T + + R++D ++G I
Sbjct: 9 DVNIYYGDKQ--AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI 66
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLF-SGTVAENI-------GYRDLMTKIDMER 296
L+D D+ R+D ++RR VG+V Q F + +V +N+ G RD ME
Sbjct: 67 LLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRD--RDHLMEV 124
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
E + R A + V+ + + LSGGQ+QRL IARAL +L++DE TS
Sbjct: 125 AERSLRGAALWDEVKD-------RLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTS 177
Query: 357 ALDSRS 362
ALD S
Sbjct: 178 ALDPAS 183
|
Length = 252 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 9e-18
Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 20/192 (10%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
V N++ Y D ++ +NL I GE V +GPSG GKSTL +++ L D SG +
Sbjct: 3 SVTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL 60
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDME----RVEHTA 301
+ + + ++ R VG+V Q L+ +VAEN+ + + E RV A
Sbjct: 61 FIGEKRMNDV--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVA 118
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ P+ +LSGGQRQR+AI R L SV +LDE S LD+
Sbjct: 119 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
Query: 362 SELLVRQAVDRL 373
+ +R + RL
Sbjct: 168 LRVQMRIEISRL 179
|
Length = 369 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 1e-17
Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 10/170 (5%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ + Y+ + L+ +N +A+IGP+G GKSTL + + P SG +L+
Sbjct: 8 DLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGE 66
Query: 252 DVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEF 309
+ + +R+ VGLV Q D +FS TV ++I + + +D E V H
Sbjct: 67 PITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSA 121
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ L G LSGG+++R+AIA + VL+LDE T+ LD
Sbjct: 122 LHML--GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
|
Length = 277 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 1e-17
Identities = 54/201 (26%), Positives = 76/201 (37%), Gaps = 55/201 (27%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S D L+ L+ I+ G+ + + GPSG GKS+L + L L+ SG I
Sbjct: 1 IELENLSLATPDGRVLL-KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI- 58
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
+ + + Q L GT+ E + Y
Sbjct: 59 --------GMPE--GEDLLFLPQRPYLPLGTLREQLIY---------------------- 86
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367
P LSGG++QRLA AR L + LDEATSALD SE +
Sbjct: 87 ---------------PWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY 131
Query: 368 QAVDRLL------GHHTVREK 382
Q + L GH K
Sbjct: 132 QLLKELGITVISVGHRPSLWK 152
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 1e-17
Identities = 61/186 (32%), Positives = 91/186 (48%), Gaps = 19/186 (10%)
Query: 187 DVKFCNISFKYADNMP---LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
D+ F + +Y P L +N+ I +G VA+IG +G GKSTL + L L P S
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 244 GCILVDDHDVQ----NIRLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERV 297
G + + + + N +L LR+ VG+V Q + LF TV ++I + + + E
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121
Query: 298 EHTARTANADEFVRT--LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
+ AR E + LP+ P LSGGQ +R+AIA L VL+LDE T
Sbjct: 122 KQKAR-----EMIELVGLPEELLAR-SP--FELSGGQMRRVAIAGVLAMEPEVLVLDEPT 173
Query: 356 SALDSR 361
+ LD +
Sbjct: 174 AGLDPK 179
|
Length = 290 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 2e-17
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 36/196 (18%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
+ N+S Y D +L+ ++L + GE + L+G +G GKSTL K+L +P SG
Sbjct: 3 MITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSG-- 58
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI--GYRDL------MTKIDMERV 297
+ R VG +SQ+ L TV + + G+ +L + +
Sbjct: 59 --------EVTRPKGLR-VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 298 EHTARTANADEFVRTLPQGYN--------------THIGPRGSSLSGGQRQRLAIARALY 343
+ E + G+ SSLSGG R+R+A+ARAL
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 344 QNSSVLILDEATSALD 359
+ +L+LDE T+ LD
Sbjct: 170 EEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 2e-17
Identities = 49/183 (26%), Positives = 72/183 (39%), Gaps = 40/183 (21%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S Y L L L+ I G+ +A++GP+G GKSTL KLL PLSG
Sbjct: 326 NVSKGYDGGRLL-LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG------- 377
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY--RDLMTKIDMERVEHTARTANAD-- 307
+++ + IGY + + V D
Sbjct: 378 --------TVKVGETV--------------KIGYFDQHRDELDPDKTVLEELSEGFPDGD 415
Query: 308 -EFVRTLPQGYNT---HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SR 361
+ VR + LSGG++ RL +A+ L Q ++L+LDE T+ LD S
Sbjct: 416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475
Query: 362 SEL 364
L
Sbjct: 476 EAL 478
|
Length = 530 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 2e-17
Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-- 245
+K N++ Y + L +++ I ALIGPSG GKST + L R+ D + C
Sbjct: 13 IKVENLNLWYGEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70
Query: 246 ---ILVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGYRDLM---TKIDMER- 296
+ ++ D+ +D LR++VG+V Q F ++ +N+ Y + K D++
Sbjct: 71 EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGV 130
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
VE+ R+A L + + SLSGGQ+QRL IAR L +++ DE TS
Sbjct: 131 VENALRSA-------ALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS 183
Query: 357 ALDSRSELLVRQAVDRLLGHHTV 379
ALD S + + L +T+
Sbjct: 184 ALDPISTARIEDLIMNLKKDYTI 206
|
Length = 258 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 2e-17
Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 14/162 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
V + L + I G A+IGP+G GKSTL + L RL P G + +D +Q+ + R
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 264 HVGLVSQ------DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
+GL++Q DIT+ ++ L T+ E E + A Q
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV 141
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+T LSGGQRQR IA L Q +++++LDE T+ LD
Sbjct: 142 DT--------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 78.2 bits (194), Expect = 2e-17
Identities = 50/158 (31%), Positives = 64/158 (40%), Gaps = 56/158 (35%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
LD ++L +R GE AL+G +G GKSTL K+L LY P SG I
Sbjct: 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI----------------- 57
Query: 264 HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
L G RD AR A + + Q
Sbjct: 58 ----------LVDGKEVSFASPRD-------------ARRAG----IAMVYQ-------- 82
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
LS G+RQ + IARAL +N+ +LILDE T+AL
Sbjct: 83 ----LSVGERQMVEIARALARNARLLILDEPTAALTPA 116
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 3e-17
Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N +F +A ++P L+ + I G VA++G G GKS+L LL D + G +
Sbjct: 641 NATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV----- 695
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEHTARTANADEFV 310
++ V V Q + + ++ ENI + + L K + +E A + +
Sbjct: 696 --------HMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPD----L 743
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
LP G T IG +G +LSGGQ+QR+++ARA+Y N+ + + D+ SA+D+
Sbjct: 744 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 3e-17
Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 17/191 (8%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ +S Y D V++ L+ + +GE L+GP+G GKST+A+++L + P +G I
Sbjct: 42 IDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT 99
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITL-FSGTVAENI---GYRDLMTKIDMERVEHTART 303
V V R R +G+V Q L TV EN+ G M+ ++E V
Sbjct: 100 VLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----I 153
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
+ EF R L + R S LSGG ++RL +ARAL + +LILDE T+ LD +
Sbjct: 154 PSLLEFAR-LESKADA----RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 208
Query: 364 LLVRQAVDRLL 374
L+ + + LL
Sbjct: 209 HLIWERLRSLL 219
|
Length = 340 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 3e-17
Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 19/163 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
++ ++L +R GE V LIGP+G GK+TL L+ Y P SG ++ D+ +
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP-PHRIA 77
Query: 264 HVGLVS--QDITLFSG-TVAENI-----GYRDLMTKIDMERVEHTARTANAD-----EFV 310
+G+ Q LF G TV EN+ L + R R A EFV
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353
+LS GQ++RL IARAL +L+LDE
Sbjct: 138 GLGE-----LADRPAGNLSYGQQRRLEIARALATQPKLLLLDE 175
|
Length = 250 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 3e-17
Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 11/188 (5%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ F N+ +Y D LV+D L+ H++ GE L+GP+G GK+T ++LL L P +G I
Sbjct: 8 IDFRNVEKRYGDK--LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANA 306
+ V + R R+ VG+V Q L TV EN+ + A
Sbjct: 66 LCGEPVPS-RARHARQRVGVVPQFDNLDPDFTVRENL--LVFGRYFGLSAAAARALVPPL 122
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
EF + L + +G LSGG ++RL +ARAL + VL+LDE T+ LD ++ L+
Sbjct: 123 LEFAK-LENKADAKVG----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM 177
Query: 367 RQAVDRLL 374
+ + LL
Sbjct: 178 WERLRSLL 185
|
Length = 306 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 3e-17
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 16/165 (9%)
Query: 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----IRLDSLRR 263
+ + A+ G SG GK+TL +L+ L P G I+++ + + I L +R
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 264 HVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
+G V Q+ LF +V N+ Y M+R + R + + + L G+
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRY-------GMKRARPSERRISFERVIELLGIGHLLGRL 128
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSELL 365
P LSGG++QR+AI RAL + +L++DE +ALD + E+L
Sbjct: 129 PG--RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 3e-17
Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 19/187 (10%)
Query: 184 INGDVKF-CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-- 240
+ C + + N V D ++ IR E IGPSG GKST+ + L R+ D
Sbjct: 3 SEAPIVMDCKLDKIFYGNFMAVRDS-HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLV 61
Query: 241 ---PLSGCILVDDHDVQNIRLDSL--RRHVGLVSQDITLFSGTVAENI--GYRDLMTKID 293
G + DV +D + RR++G+V Q FS ++ +N+ G R K D
Sbjct: 62 KGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGD 121
Query: 294 M-ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352
+ +RV+H + A + V+ + G SLSGGQ+QRL IARA+ VL+LD
Sbjct: 122 LGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD 174
Query: 353 EATSALD 359
E SALD
Sbjct: 175 EPCSALD 181
|
Length = 261 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 4e-17
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 42/195 (21%)
Query: 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+ V+F ++SF Y D+ L+ ++ I G ALIG +G GKST++KL ++G
Sbjct: 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKL-------ING 55
Query: 245 CILVDDHDVQNIRLD----------SLRRHVGLVSQ--DITLFSGTVAENIGY------- 285
+L DD+ I +D +R VG+V Q D TV +++ +
Sbjct: 56 LLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV 115
Query: 286 -RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344
R M KI + + +++ + P +LSGGQ+QR+AIA L
Sbjct: 116 PRPEMIKIVRDVLADVGML----DYIDSEPA-----------NLSGGQKQRVAIAGILAV 160
Query: 345 NSSVLILDEATSALD 359
++ILDE+TS LD
Sbjct: 161 EPKIIILDESTSMLD 175
|
Length = 282 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 4e-17
Identities = 57/188 (30%), Positives = 82/188 (43%), Gaps = 28/188 (14%)
Query: 196 KYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255
K + V D +N +R GE +GP+G GK+T ++L L P SG V +DV
Sbjct: 1 KVYGDFKAV-DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-- 57
Query: 256 IR-LDSLRRHVGLVSQDITLFSG-TVAENI-------GY-RDLMTKIDMERVEHTARTAN 305
+R +RR +G+V Q ++ T EN+ G +D + E +E
Sbjct: 58 VREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEA 117
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
AD V T SGG R+RL IA +L VL LDE T+ LD R+
Sbjct: 118 ADRPVGTY---------------SGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA 162
Query: 366 VRQAVDRL 373
+ + L
Sbjct: 163 IWDYIRAL 170
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 4e-17
Identities = 55/170 (32%), Positives = 80/170 (47%), Gaps = 26/170 (15%)
Query: 209 NLHIRAGETV------ALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD---HDV-QNIRL 258
N + A T+ AL GPSG GK++L ++ L P G I ++ D + I L
Sbjct: 12 NFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFL 71
Query: 259 DSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
+R +G V QD LF TV N+ Y M K A D+ V L G
Sbjct: 72 PPEKRRIGYVFQDARLFPHYTVRGNLRY--GMWKS---------MRAQFDQLVALL--GI 118
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSELL 365
+ +LSGG++QR+AI RAL +L++DE ++LD + E+L
Sbjct: 119 EHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL 168
|
Length = 352 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 4e-17
Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 30/175 (17%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR------ 257
VL ++L AG+ +++IG SG GKST + + L P +G I V+ +++ R
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 258 -------LDSLRRHVGLVSQDITLFSG-TVAENIGYRDL----MTKID-MERVEHTARTA 304
L LR +G+V Q L+S TV EN+ + ++K + +ER E
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
E P + LSGGQ+QR+AIARAL V++ DE TSALD
Sbjct: 141 GIAEKADAYP-----------AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALD 184
|
Length = 256 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 5e-17
Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 11/154 (7%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-R 262
+L ++L + GE ++G +G GK+TL K L+ L SG I +D D+ + R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
+ V Q +F TV EN+ + R+ + + L +
Sbjct: 75 AGIAYVPQGREIFPRLTVEENL-------LTGLAA--LPRRSRKIPDEIYELFPVLKEML 125
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
G RG LSGGQ+Q+LAIARAL +L+LDE T
Sbjct: 126 GRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 5e-17
Identities = 59/171 (34%), Positives = 82/171 (47%), Gaps = 21/171 (12%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNIRLD 259
L ++L E ALIGPSG GKST + L R+ D ++G + + ++ D
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 260 S--LRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRT-LPQG 316
LR+ VG+V Q F ++ EN+ Y + + + V DE V T L Q
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAV--------LDEAVETSLKQA 132
Query: 317 -----YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
H+ SLSGGQ+QR+ IAR L V++LDE TSALD S
Sbjct: 133 AIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPIS 183
|
Length = 252 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 5e-17
Identities = 62/184 (33%), Positives = 84/184 (45%), Gaps = 33/184 (17%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV--D 249
I+ Y + L + L GET+ L+GPSG GKS+L ++L L P SG + + +
Sbjct: 7 GINCFYGAHQ--ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN 64
Query: 250 DHDVQNIRLD----SLRRHVGLVSQDITLFSG-TVAENI--------GYRDLMTKIDMER 296
D D LRR+VG+V Q L+ TV EN+ G E+
Sbjct: 65 HFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEK 124
Query: 297 VEHTARTAN-ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
+ R AD + P LSGGQ+QR+AIARAL VL+ DE T
Sbjct: 125 LLKRLRLKPYADRY----PL-----------HLSGGQQQRVAIARALMMEPQVLLFDEPT 169
Query: 356 SALD 359
+ALD
Sbjct: 170 AALD 173
|
Length = 242 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 5e-17
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++S Y L+ ++L I +GE V ++GPSG GK+TL L+ P G I ++
Sbjct: 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG- 66
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
+ I R G+V Q+ L V +N+ + + + +E R A + +
Sbjct: 67 --RRIEGPGAER--GVVFQNEALLPWLNVIDNVAF-----GLQLRGIEKAQRREIAHQML 117
Query: 311 RTLP-QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
+ +G LSGG RQR+ IARAL +L+LDE ALD+ L R+
Sbjct: 118 ALVGLEGAEHK---YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA----LTREQ 170
Query: 370 VDRLL 374
+ LL
Sbjct: 171 MQELL 175
|
Length = 259 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 7e-17
Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 17/167 (10%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNIRL 258
VLD +NL I AL+GPSG GKSTL ++ RL + +SG + +D D+ + +
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 259 DSLRRHVGLVSQ------DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRT 312
LRR V +V Q ++++F EN+ + ++ + E R A E +
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIF-----ENVALGLKLNRLVKSKKELQERVRWALEKAQL 132
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ + P G LSGGQ+QRL IARAL VL+ DE T+ LD
Sbjct: 133 WDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANLD 178
|
Length = 250 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 8e-17
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 18/188 (9%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ F+Y D L L+L I G AL+GP+G GKSTL L +Y P G + V
Sbjct: 9 DLHFRYKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGR 67
Query: 252 DVQNIRLDSLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKID----MERVEHTARTAN 305
+V +R VGLV QD +FS TV +++ + + +D RVE +
Sbjct: 68 EVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVR 127
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+F P H LS GQ++R+AIA L + V++LDE + LD R +
Sbjct: 128 MWDFRDKPPY----H-------LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176
Query: 366 VRQAVDRL 373
+ + +DRL
Sbjct: 177 LMEILDRL 184
|
Length = 274 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 1e-16
Identities = 57/182 (31%), Positives = 86/182 (47%), Gaps = 24/182 (13%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----I 246
N++ Y +L +NL I E A IGPSG GKST + R+ D + C +
Sbjct: 10 NLNLWYGSKQ--ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL 67
Query: 247 LVDDHDVQNIRLDS--LRRHVGLVSQDITLFSGTVAENIGYRDLM-------TKIDMERV 297
+D DV ++ + LR VG+V Q F ++ +N+ Y + K+D E V
Sbjct: 68 DIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLD-EIV 126
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
E + + L + + LSGGQ+QRL IARA+ ++L++DE SA
Sbjct: 127 EKSLTSVG-------LWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSA 179
Query: 358 LD 359
LD
Sbjct: 180 LD 181
|
Length = 251 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 1e-16
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 10/166 (6%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
+ ++ +R G+T+A+IG +G GKSTLAK+L + +P SG IL++DH + +
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 265 VGLVSQDITLFSGTVAENIGY---RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
+ ++ QD S IG L D+E + + V LP N +
Sbjct: 89 IRMIFQDPNT-SLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYP 147
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSELL 365
L+ GQ+QR+A+ARAL ++I DEA ++LD RS+L+
Sbjct: 148 ----HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLI 189
|
Length = 267 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-16
Identities = 62/187 (33%), Positives = 92/187 (49%), Gaps = 21/187 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+S +Y + VL+QL+LHI AG+ VA++G SG GKSTL +LL L P +G +L
Sbjct: 17 AVSKRYGERT--VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA 74
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
+ R D+ L+ QD L V +N+G L K A A
Sbjct: 75 PLAEAREDTR-----LMFQDARLLPWKKVIDNVG---LGLKGQWRDAALQALAA------ 120
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
G ++LSGGQ+QR+A+ARAL +L+LDE ALD+ + + ++ +
Sbjct: 121 ----VGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI 176
Query: 371 DRLLGHH 377
+ L H
Sbjct: 177 ESLWQQH 183
|
Length = 257 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 1e-16
Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 27/185 (14%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV------------DDH 251
VL ++L + AGE V L GPSG GKSTL + L Y P G ILV +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311
+V +R R +G VSQ + + A ++ L+ + + R AR AD R
Sbjct: 86 EVLEVR----RTTIGYVSQFLRVIPRVSALDVVAEPLLAR-GVPR--EVARAKAADLLTR 138
Query: 312 -TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
LP+ + P ++ SGG++QR+ IAR + +L+LDE T++LD+ + R V
Sbjct: 139 LNLPERL-WSLAP--ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATN----RAVV 191
Query: 371 DRLLG 375
L+
Sbjct: 192 VELIR 196
|
Length = 235 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 55/169 (32%), Positives = 78/169 (46%), Gaps = 27/169 (15%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N++F Y DN + +NL I+ GE + LIG +G GKSTLA LL LY P SG IL+D
Sbjct: 327 NVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFS------GTVAENIGYRDLMTKIDM-ERVEHTARTA 304
V + + R+ V D LF G A + ++ M ++E
Sbjct: 386 PVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLEL----- 440
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353
D + L LS GQ++RLA+ AL + +L+LDE
Sbjct: 441 -EDGRISNL-------------KLSKGQKKRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 1e-16
Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 22/177 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+++ Y+D L +N++I+ GE A++G +G GKSTL + L + P SG IL D
Sbjct: 10 ELNYNYSDGTH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGK 68
Query: 252 DVQNIR--LDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKID----MERVEHT-AR 302
+ R L LR VG+V Q D LFS +V +++ + + K+ +RV++ R
Sbjct: 69 PIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKR 128
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
T ++ P TH LS GQ++R+AIA L VL+LDE T+ LD
Sbjct: 129 TGIEH--LKDKP----TH------CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173
|
Length = 283 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 2e-16
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 12/168 (7%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSL 261
L + H+R GE L G SG GKSTL KL+ + P +G I HD+ ++ + L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 262 RRHVGLVSQD-ITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320
RR +G++ QD L TV +N+ ++ + + R + A + V L + N
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRR--RVSAALDKVGLLDKAKNFP 135
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD-SRSELLVR 367
I LSGG++QR+ IARA+ +VL+ DE T LD + SE ++R
Sbjct: 136 I-----QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR 178
|
Length = 222 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 2e-16
Identities = 67/263 (25%), Positives = 115/263 (43%), Gaps = 31/263 (11%)
Query: 108 LFILCGGSLLVSG--GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDL 165
F+L G +L + S D ++ +F+ +L+++ P++ + A Q + A +RL D
Sbjct: 248 FFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADF 307
Query: 166 T-KFKS-----KVIEKPDAVSLDHIN--GDVKFCNISFKYAD---NMPLVLDQLNLHIRA 214
+F ++ + + + L H ++ ++ + L ++L I
Sbjct: 308 GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQ 367
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274
G+ V ++G +G GKSTLAKL LY P G IL+D V D R + D L
Sbjct: 368 GDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHL 427
Query: 275 FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS----LSG 330
F + + G EH A NA ++++ L I G S LS
Sbjct: 428 FDDLIGPDEG-------------EH-ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473
Query: 331 GQRQRLAIARALYQNSSVLILDE 353
GQ++RLA+ A ++ +L+ DE
Sbjct: 474 GQQKRLALICAWLEDRPILLFDE 496
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 65/230 (28%), Positives = 100/230 (43%), Gaps = 24/230 (10%)
Query: 128 LVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL--FDLTKFKSKVIEKPDAVSLDHIN 185
+ + L+F+ P+ + A ++ +L +K+ +
Sbjct: 265 AATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTL- 323
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+ N+ F Y DN + +NL I+ GE V LIG +G GKSTLA LL LY P SG
Sbjct: 324 ---ELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVA-ENIGYRDLMTKIDMERVEHTARTA 304
IL+D V +L+ R+ V D LF + E L+ K ++R+E +T+
Sbjct: 380 ILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKW-LQRLELAHKTS 438
Query: 305 -NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353
N F LS GQ++RLA+ AL + +L+LDE
Sbjct: 439 LNDGRFSNL--------------KLSTGQKKRLALLLALLEERDILVLDE 474
|
Length = 546 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 2e-16
Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 18/179 (10%)
Query: 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262
L++D +++ G L+GP+G GKSTL +LL P +G + + D+ + +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTAR----TANADEFV-RTLPQGY 317
R V LV QD A + RD++ + R+ H + + + V R L +
Sbjct: 75 RRVALVEQDSD-----TAVPLTVRDVVA---LGRIPHRSLWAGDSPHDAAVVDRALARTE 126
Query: 318 NTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL----LVRQAVD 371
+H+ R S+LSGG+RQR+ +ARAL Q +L+LDE T+ LD R++L LVR+
Sbjct: 127 LSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA 185
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 4e-16
Identities = 64/191 (33%), Positives = 96/191 (50%), Gaps = 17/191 (8%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ +S Y D +V++ L+ I GE L+GP+G GKST+A++LL + P G I
Sbjct: 5 IDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITL-FSGTVAENI---GYRDLMTKIDMERVEHTART 303
V V + R R +G+V Q L TV EN+ G M+ ++E V
Sbjct: 63 VLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-----I 116
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
+ EF R L + R + LSGG ++RL +ARAL + +LILDE T+ LD +
Sbjct: 117 PSLLEFAR-LESKADV----RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171
Query: 364 LLVRQAVDRLL 374
L+ + + LL
Sbjct: 172 HLIWERLRSLL 182
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 4e-16
Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 13/165 (7%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LSGCILVDDHDVQ--NIRLD 259
LD ++L +RAGE V+L G +G GKSTL K+L +Y P G I+ + ++Q NIR D
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIR-D 78
Query: 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
+ R + ++ Q++ L +V ENI + +T +++ A A + + L N
Sbjct: 79 TERAGIAIIHQELALVKELSVLENIFLGNEITP--GGIMDYDAMYLRAQKLLAQLKLDIN 136
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
+L GQ+Q + IA+AL + + +LILDE T++L + SE
Sbjct: 137 PAT--PVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESE 178
|
Length = 506 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 5e-16
Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 21/197 (10%)
Query: 188 VKFCNISFKYADNMPL---VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
++F N+S+ Y P + +N G+ A++G +G GKSTL + + L P +G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 245 CILVDD----HDVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVE 298
+ VDD H ++ + +R+ +G+V Q + LF TV I + K++++ V+
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVK 122
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGS-SLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ A + G++ + + +SGGQ +++AI L N +++LDE T+
Sbjct: 123 NYA-------HRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
Query: 358 LDSRSELLVRQAVDRLL 374
LD +S ++ V RLL
Sbjct: 176 LDPQS----KRQVMRLL 188
|
Length = 286 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 5e-16
Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 38/213 (17%)
Query: 188 VKFCNISFKYADNMPLV---LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+KF N+ + Y+ P+ LD ++ + G VAL+G +G GKSTL + L P SG
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 245 CILVDDHDVQ----NIRLDSLRRHVGLVSQ--DITLFSGTVAE-------NIGYRDLMTK 291
I + + + N L LR+ V LV Q + LF TV + N G+ + K
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 292 ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347
+++V + + F LSGGQ +R+AIA +
Sbjct: 123 EKALKWLKKVGLSEDLISKSPF-----------------ELSGGQMRRVAIAGVMAYEPE 165
Query: 348 VLILDEATSALDSRSELLVRQA-VDRLLGHHTV 379
+L LDE + LD + Q D HTV
Sbjct: 166 ILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTV 198
|
Length = 287 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 5e-16
Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 23/182 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
++F Y L +N+ + + ALIGPSG GKST + R++D G I
Sbjct: 21 KLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI 78
Query: 247 LV--DDHDVQNIRLDSL--RRHVGLVSQDITLFSGTVAENIGY----RDLMTK-IDMERV 297
++ D+ ++ + +D + R + +V Q F ++ EN+ Y R + + I ERV
Sbjct: 79 ILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERV 138
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
E+ R A + V+ +G +LSGGQ+QRL IARAL + +L+ DE TSA
Sbjct: 139 ENALRNAALWDEVKD-------RLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSA 191
Query: 358 LD 359
LD
Sbjct: 192 LD 193
|
Length = 265 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 7e-16
Identities = 57/165 (34%), Positives = 79/165 (47%), Gaps = 17/165 (10%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
L +NL I+ GE ++LIG SG GKSTL L+ L P SG ++++ + D +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57
Query: 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQ--GYNTHI 321
+V Q+ +L TV ENI + ++RV + V G
Sbjct: 58 --VVFQNYSLLPWLTVRENIA-------LAVDRVLPDLSKSERRAIVEEHIALVGLTEAA 108
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSEL 364
R LSGG +QR+AIARAL VL+LDE ALD +R L
Sbjct: 109 DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL 153
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 8e-16
Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+L +++ + G+ ++G +G GKSTL + LL ++ G + + R
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------R 721
Query: 264 HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
+ V Q + + TV NI + D + D R+ R + + + L G T IG
Sbjct: 722 SIAYVPQQAWIMNATVRGNILFFD---EEDAARLADAVRVSQLEADLAQLGGGLETEIGE 778
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR-SELLVRQAVDRLLGH 376
+G +LSGGQ+ R+++ARA+Y N V +LD+ SALD+ E +V + LG
Sbjct: 779 KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVE---ECFLGA 829
|
Length = 1560 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (188), Expect = 9e-16
Identities = 64/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S+ Y D P L+ +NL I+ GE + +IG +G GKSTLA L L P G +L
Sbjct: 2 IRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 248 VDDHDVQNI-RLDSLRRHVGLVSQDI-TLFSG-TVAENIGYRDLMTKIDMERVEHTARTA 304
V D + +L +R+ VG+V Q+ T F G TV E++ + + + +E R
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP--ENLCLPPIEIRKRV- 117
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
D + + H P+ +LSGGQ Q +A+A L LI DE TS LD S +
Sbjct: 118 --DRALAEIGLEKYRHRSPK--TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173
Query: 365 LVRQAVDRL 373
V + + +L
Sbjct: 174 AVLERIKKL 182
|
Length = 274 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 1e-15
Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 23/201 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
N++ Y D L+ +N+ I ALIGPSG GKST + L R+ D + G +
Sbjct: 12 NLNLFYTDFK--ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV 69
Query: 247 LVDDHDVQNIRLD--SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTA 304
+ + ++ + D LRR +G+V Q F ++ +NI Y ++ T
Sbjct: 70 IYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYG--------PKIHGTKDKK 121
Query: 305 NADEFVR------TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
DE V L + SLSGGQ+QRL IAR L +V+++DE TSAL
Sbjct: 122 KLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSAL 181
Query: 359 DSRSELLVRQAVDRLLGHHTV 379
D S + + + L +T+
Sbjct: 182 DPISTGKIEELIINLKESYTI 202
|
Length = 254 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 1e-15
Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 4/208 (1%)
Query: 172 VIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTL 231
VIE P A G + ++ KY + VL L+ + G+ V L+G +G GKSTL
Sbjct: 1202 VIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTL 1261
Query: 232 AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK 291
LLRL G I +D ++ L + R+ G++ Q + +FSGT +N+ D +
Sbjct: 1262 LSALLRLLST-EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL---DPYEQ 1317
Query: 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351
E + A + P + + G LS G +Q + +AR++ + +L+L
Sbjct: 1318 WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377
Query: 352 DEATSALDSRSELLVRQAVDRLLGHHTV 379
DE ++ LD + ++R+ + + + TV
Sbjct: 1378 DEPSAHLDPVTLQIIRKTLKQSFSNCTV 1405
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 1e-15
Identities = 61/184 (33%), Positives = 88/184 (47%), Gaps = 23/184 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCI 246
++S Y + ++ +++ I ALIGPSG GKST + + R+ D + G I
Sbjct: 26 DLSIYYGEKR--AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI 83
Query: 247 LVDDHDV--QNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTA 304
L + ++ NI + +LRR +G+V Q F ++ NI + K ER R +
Sbjct: 84 LYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITH---ALKYAGER-----RKS 135
Query: 305 NADEFVR------TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
DE V L + SLSGGQ+QRL IAR L +VL+LDE SAL
Sbjct: 136 VLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASAL 195
Query: 359 DSRS 362
D S
Sbjct: 196 DPIS 199
|
Length = 268 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 1e-15
Identities = 56/152 (36%), Positives = 78/152 (51%), Gaps = 13/152 (8%)
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI---RLDSLRRHVGLVSQD 271
GET++L+G SG GKST + LLRL + G I+ + + + +L +LRR + + QD
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 272 ITLFSGTVAENIGYRDLMTKIDMERVEH----TARTANADEFVRTLPQGYNTHIGPRGSS 327
S + +G +M + + + AR A E V LP+ H
Sbjct: 410 -PYASLDPRQTVGD-SIMEPLRVHGLLPGKAAAARVAWLLERVGLLPE----HAWRYPHE 463
Query: 328 LSGGQRQRLAIARALYQNSSVLILDEATSALD 359
SGGQRQR+ IARAL N V+I DEA SALD
Sbjct: 464 FSGGQRQRICIARALALNPKVIIADEAVSALD 495
|
Length = 623 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 22/165 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
V+ ++L + GE + L+GPSG GKSTL +++ L SG I + V L+ R
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNE--LEPADR 76
Query: 264 HVGLVSQDITLFSG-TVAENIGY----RDLMTK--IDMERVEHTARTANADEFVRTLPQG 316
+ +V Q+ L+ +V EN+ Y R M K I+ ERV AR + + P+
Sbjct: 77 DIAMVFQNYALYPHMSVRENMAYGLKIRG-MPKAEIE-ERVAEAARILELEPLLDRKPR- 133
Query: 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
LSGGQRQR+A+ RA+ + +V + DE S LD++
Sbjct: 134 ----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAK 168
|
Length = 356 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 3e-15
Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN---IRLDSL 261
LD ++ + G+T+A++G SG GKSTLA+LL + P G + D+ L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 262 RRHVGLVSQD--ITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN- 318
R+ + +V Q+ +L I L+ + E + V P+ Y+
Sbjct: 91 RQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDR 150
Query: 319 -THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
H+ SGGQRQR+AIARAL + V++ DE SALD
Sbjct: 151 YPHM------FSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 3e-15
Identities = 56/189 (29%), Positives = 103/189 (54%), Gaps = 18/189 (9%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LR 262
V++ ++L + +GE V L+GP+G GK+T +++ + +G I++DD D+ + L + R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDM-ERVEHTARTANADEFVRTLPQGYNTHI 321
R +G + Q+ ++F Y +LM + + + + R A+E + + + H+
Sbjct: 78 RGIGYLPQEASIFRRLSV----YDNLMAVLQIRDDLSAEQREDRANEL---MEEFHIEHL 130
Query: 322 -GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL----LG- 375
G SLSGG+R+R+ IARAL N ++LDE + +D S + +++ ++ L LG
Sbjct: 131 RDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGV 190
Query: 376 ---HHTVRE 381
H VRE
Sbjct: 191 LITDHNVRE 199
|
Length = 241 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 4e-15
Identities = 59/175 (33%), Positives = 80/175 (45%), Gaps = 29/175 (16%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR------ 257
VL ++L AG+ +++IG SG GKST + + L P G I+V+ + +R
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 258 -------LDSLRRHVGLVSQDITLFSG-TVAEN-----IGYRDLMTKIDMERVEHTARTA 304
L LR + +V Q L+S TV EN I L + ER
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV 139
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
DE + Y H LSGGQ+QR++IARAL VL+ DE TSALD
Sbjct: 140 GIDERAQ---GKYPVH-------LSGGQQQRVSIARALAMEPEVLLFDEPTSALD 184
|
Length = 257 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (182), Expect = 5e-15
Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 28/187 (14%)
Query: 192 NISFKYADNMPL-VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250
N+ FKY + L+ ++ I GE V++IG +G GKST A+L+ L++ G + +D
Sbjct: 9 NLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDG 68
Query: 251 HDVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGY--------RDLMTKIDMERVEHT 300
+ + +LRR +G+V Q D TV +++ + R+ M K RV+
Sbjct: 69 ELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIK----RVDEA 124
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD- 359
N +F P + LSGGQ+QR+A+A + ++ILDE+TS LD
Sbjct: 125 LLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 360 -SRSELL 365
R E++
Sbjct: 174 TGRQEIM 180
|
Length = 277 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 5e-15
Identities = 56/163 (34%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRH 264
+L I GE ++G SG GKST+ +LL RL +P G +L+D D+ I L R+
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
+ +V Q L TV +N + + I+ E A A + Y
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP----- 162
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSEL 364
LSGG RQR+ +ARAL N +L++DEA SALD R+E+
Sbjct: 163 --DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEM 203
|
Length = 400 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-15
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 15/165 (9%)
Query: 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262
++ L+ + AGE + L GP+G GK+TL +L+ L P +G I +D D+ + +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 263 RHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
++G ++ + TVAEN+ + + +++ A + LP GY
Sbjct: 76 HYLG--HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP--LAHLPFGY---- 127
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
LS GQ++R+A+AR L N + ILDE T+ALD+ + L
Sbjct: 128 ------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALF 166
|
Length = 207 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 6e-15
Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 4/194 (2%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
G + +++ KY + VL+ ++ I G+ V L+G +G GKSTL LRL + G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
I +D ++ L R+ G++ Q + +FSGT +N+ D K E + A
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL---DPYGKWSDEEIWKVAEEVG 116
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+ P + + G LS G +Q + +AR++ + +L+LDE ++ LD + +
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 366 VRQAVDRLLGHHTV 379
+R+ + + TV
Sbjct: 177 IRKTLKQAFADCTV 190
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 8e-15
Identities = 65/202 (32%), Positives = 88/202 (43%), Gaps = 24/202 (11%)
Query: 183 HINGDVKFC--NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
+ D F N+SF+ +L L+L AG+ LIG +G GKSTL K+L R
Sbjct: 5 TNHSDTTFALRNVSFRVPGRT--LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP 62
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI--------GYRDLMTK 291
P G IL+D +++ + R V + Q + G TV E + G
Sbjct: 63 PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGA 122
Query: 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351
D E+VE L SLSGG+RQR IA + Q+S L+L
Sbjct: 123 ADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAWIAMLVAQDSRCLLL 171
Query: 352 DEATSALDSRSELLVRQAVDRL 373
DE TSALD ++ V V RL
Sbjct: 172 DEPTSALDIAHQVDVLALVHRL 193
|
Length = 265 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 27/170 (15%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI---RLDS 260
V+ ++ +R GET+ L+G SG GKST LLRL G I D + N+ +L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDME-------RVEHTARTANADE--FVR 311
+R + +V QD L ++++ RV +A E +
Sbjct: 360 VRHRIQVVFQD------------PNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIA 407
Query: 312 TLPQ-GYNTHIGPR-GSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ + G + R + SGGQRQR+AIARAL S++ILDE TS+LD
Sbjct: 408 VMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 64/192 (33%), Positives = 93/192 (48%), Gaps = 20/192 (10%)
Query: 190 FCNISFKYADNMPLV--LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
F I + P V LD ++ RAG+ AL+G +G GKSTL K+L Y P +G IL
Sbjct: 7 FDGIGKTF----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62
Query: 248 VDDHDVQ--NIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA 304
+D +++ + +L V ++ Q++ L TVAEN+ L K + R
Sbjct: 63 IDGQEMRFASTT-AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNR----RLL 117
Query: 305 NADEFVRTLPQGYNTHIGPRG--SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR- 361
N R + I P LS GQRQ + IA+AL +N+ V+ DE TS+L +R
Sbjct: 118 NY--EAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175
Query: 362 SELLVRQAVDRL 373
E L R + L
Sbjct: 176 IEQLFR-VIREL 186
|
Length = 501 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-14
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 28/186 (15%)
Query: 183 HINGD--VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
H + D + F N+ A VL +NL I GE +A+ G +G GK++L L+L +
Sbjct: 33 HSSDDNNLFFSNLCLVGAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE 88
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVS---QDITLFSGTVAENIGYRDLMTKIDMERV 297
P G I +H G +S Q + GT+ ENI + D R
Sbjct: 89 PSEGKI----------------KHSGRISFSSQFSWIMPGTIKENIIFG---VSYDEYRY 129
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ + +E + P+ NT +G G +LSGGQR R+++ARA+Y+++ + +LD
Sbjct: 130 KSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189
Query: 358 LDSRSE 363
LD +E
Sbjct: 190 LDVFTE 195
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-14
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S ++ ++ ++L + L+GP+G GKSTL K++ + P SG I+ D H
Sbjct: 5 NLSKRFGKQT--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH 62
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVA-ENIGYRDLMTKIDMERVEHTARTANADEFV 310
L +G + + L+ A EN+ + + R++ +
Sbjct: 63 PWTRKDL----HKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL---- 114
Query: 311 RTLPQGYNTHIGPRGSS-LSGGQRQRLAIARALYQNSSVLILDEATSALD 359
T+ G + + S G +QRL IA AL + +LILDE T+ LD
Sbjct: 115 --------TNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (177), Expect = 3e-14
Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 17/187 (9%)
Query: 188 VKFCNISFKYADNMPLV---LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+KF +++ Y N P L ++L ++ G ALIG +G GKSTL + L L P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 245 CILVDDHDVQNI----RLDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVE 298
+ V D V + + +R+ VG+V Q + LF TV +++ + I E+ E
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGS-SLSGGQRQRLAIARALYQNSSVLILDEATSA 357
A A E V G + LSGGQ +R+AIA L VL+LDE T+
Sbjct: 122 KIA--AEKLEMV-----GLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAG 174
Query: 358 LDSRSEL 364
LD ++ +
Sbjct: 175 LDPKARI 181
|
Length = 288 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 3e-14
Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCI 246
N+ Y N V+ ++L I AL+GPSG GKSTL + RL + + G +
Sbjct: 9 NLRVYYGSNH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV 66
Query: 247 LVDDHDVQNIRLDSL--RRHVGLVSQ------DITLFSGTVAENIGYRDLMT---KIDME 295
+ ++ + +D + RR VG+V Q +T++ VA + L+ ++D E
Sbjct: 67 RLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYD-NVAIGVKLNGLVKSKKELD-E 124
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
RVE + A + V+ Y S+LSGGQRQRL IARAL +L++DE T
Sbjct: 125 RVEWALKKAALWDEVKDRLNDY-------PSNLSGGQRQRLVIARALAMKPKILLMDEPT 177
Query: 356 SALD 359
+ +D
Sbjct: 178 ANID 181
|
Length = 253 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 3e-14
Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 32/197 (16%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+S Y + VLD ++L I G ++IGP+G GKSTL ++ RL SG I +D
Sbjct: 6 NVSKSYGTKV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGL 63
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY------RDLMTKIDMERVEHTARTA 304
++ + L + + ++ Q+ + S TV + +G+ + +TK D +
Sbjct: 64 ELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYL 123
Query: 305 N----ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD- 359
+ +D ++ LSGGQRQR IA L Q++ ++LDE + LD
Sbjct: 124 HLEDLSDRYL---------------DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDM 168
Query: 360 --SRSEL-LVRQAVDRL 373
S + ++R+ D L
Sbjct: 169 KHSVQIMKILRRLADEL 185
|
Length = 252 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 4e-14
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259
VL ++ I GE +A++G SG GKSTL LL L P SG ++ + + + + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
+ +G + Q L T EN+ L+ K + A A G
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLA-------AVGLE 136
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHT 378
R S LSGG+RQR+AIARAL N +++ DE T LD+R+ ++ +LLG
Sbjct: 137 HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA----DSIFQLLGELN 192
Query: 379 VRE 381
+
Sbjct: 193 RLQ 195
|
Length = 233 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-14
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 14/160 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LSGCILVDDHDVQNIRLDS 260
+L +N I GE V L+GPSG GKSTL ++ +G + +++ + L +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM--LPA 74
Query: 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
+R +G++ QD LF +V +N+ + T ++ AR A+ +
Sbjct: 75 AQRQIGILFQDALLFPHLSVGQNLLFALPAT------LKGNARRNAANAALERSGLDGAF 128
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
H P ++LSGGQR R+A+ RAL L+LDE S LD
Sbjct: 129 HQDP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 7e-14
Identities = 55/177 (31%), Positives = 77/177 (43%), Gaps = 25/177 (14%)
Query: 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LSGCILVDDHDVQNIRLDSLRRHVGL 267
+ GE +A++G SG GK+TL L SG +L++ + +R
Sbjct: 47 VAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAY 103
Query: 268 VSQDITLFSG--TVAENIGY-------RDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
V QD LF TV E++ + R + K ERV+ + L + N
Sbjct: 104 VQQD-DLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-------LRKCAN 155
Query: 319 THIGPRGS--SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
T IG G LSGG+R+RLA A L + +L DE TS LDS V Q + L
Sbjct: 156 TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGL 212
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (172), Expect = 9e-14
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 25/184 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL---YDP---LSGCILVDDHDVQNIR 257
+L + + I ++GPSG GKSTL K+L RL YD + G +L D+ I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 258 LDSLRRHVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTARTANADEFVRT 312
LR+ VG+V Q F ++ +NI Y + K +++++ +E +R
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI--------VEECLRK 136
Query: 313 LPQGYNTH--IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
+ + + S LSGGQ+QRL IARAL VL++DE TS +D ++ QA+
Sbjct: 137 VGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID----IVNSQAI 192
Query: 371 DRLL 374
++L+
Sbjct: 193 EKLI 196
|
Length = 257 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 1e-13
Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 78/176 (44%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S Y L+L ++L I G+ + L+G +G GKST LL+L
Sbjct: 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKST----LLKL--------- 45
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTV----AENIGYRDLMTKIDMERVEHTART 303
++ ++ G V IGY
Sbjct: 46 --------------------IAGELEPDEGIVTWGSTVKIGY------------------ 67
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
Q LSGG++ RLA+A+ L +N ++L+LDE T+ LD
Sbjct: 68 ---------FEQ------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 1e-13
Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 185 NGDVKFCNISFKYADNMPL---VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241
+ D+ N+S+ YA P L+ +L + + +IG +G GKST+ +L L
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 242 LSGCILVDDHDV-QNIR----LDSLRRHVGLVSQ--DITLFSGTVAENIGYRDLMTKIDM 294
+G +V D+ + N++ + LR+ +GLV Q + LF T+ ++I + + +
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354
+ E + + V LP+ Y + LSGGQ++R+A+A + + + L+LDE
Sbjct: 124 Q--EAYKKVPELLKLV-QLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 355 TSALDSRSE 363
T LD + E
Sbjct: 178 TGGLDPKGE 186
|
Length = 289 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 1e-13
Identities = 63/198 (31%), Positives = 96/198 (48%), Gaps = 21/198 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+K N+SF Y + +L+ +++ I + A+IGPSG GKST K L R+ + L +
Sbjct: 8 IKVNNLSFYY--DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVR 64
Query: 248 VD---DHDVQNI-----RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT----KIDME 295
V+ + QNI L+ LRR V +V LF +V +N+ Y + K++++
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
+ +A AD L I LSGGQ+QRL IARAL VL++DE
Sbjct: 125 DIVESALKD-AD-----LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178
Query: 356 SALDSRSELLVRQAVDRL 373
LD + + V + L
Sbjct: 179 FGLDPIASMKVESLIQSL 196
|
Length = 261 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-13
Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 22/191 (11%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N++ ++ LD ++ + GE L+GP+G GK+T +++L + P SG +L
Sbjct: 1 LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANA 306
D + + R +G + ++ L+ V + + Y L +++ E AR
Sbjct: 59 FDGKPLD----IAARNRIGYLPEERGLYPKMKVIDQLVY--LAQLKGLKKEE--AR-RRI 109
Query: 307 DEFVRTLPQGYNTHIGPRGSS----LSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
DE++ L + + LS G +Q++ A+ + +LILDE S LD +
Sbjct: 110 DEWLERL------ELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163
Query: 363 ELLVRQAVDRL 373
L++ + L
Sbjct: 164 VELLKDVIREL 174
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 2e-13
Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGC-ILVDDHDVQ------- 254
L ++L+I GE VAL+GPSG GKSTL + L L D +G I + VQ
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 255 NIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTL 313
+IR R + G + Q L + +V EN+ L + ++ L
Sbjct: 80 DIR--KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL 137
Query: 314 PQGYNTHIG-PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+ H R S+LSGGQ+QR+AIARAL Q + V++ DE ++LD S +V
Sbjct: 138 TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191
|
Length = 262 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-13
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L+ +NL + +GE + ++GPSG GK+TL L+ G I +D ++
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD-----GKPVEGPGA 70
Query: 264 HVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
G+V Q+ L V +N+ + + ++ + A + +G
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLK----KVGLEGAEKR-- 124
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
LSGGQRQR+ IARAL N +L+LDE ALD+
Sbjct: 125 -YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-13
Identities = 55/170 (32%), Positives = 72/170 (42%), Gaps = 30/170 (17%)
Query: 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269
L GE + L+GP+G GK+TL + +L L P G + V RH+G V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVP 55
Query: 270 Q----------DI--TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
Q + T+ SG +IG+ D V R E P G
Sbjct: 56 QRHEFAWDFPISVAHTVMSGR-TGHIGWLRRPCVADFAAVRDALRRVGLTELADR-PVG- 112
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS-ELLV 366
LSGGQRQR+ +ARAL SVL+LDE + LD + ELL
Sbjct: 113 ---------ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT 153
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (169), Expect = 3e-13
Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 20/184 (10%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-----ILVDDHDVQNIR- 257
VLDQ+++ A +L+GP+G GK+T + L R+ D +SG +L+ + N R
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 258 LDSLRRHVGLVSQDITLFSGTVAENI--GYR--DLMTKIDMERVEHTARTANADEFVRTL 313
+ RR VG++ Q F ++ +N+ G R L+ + + V T L
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVG------L 149
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD----SRSELLVRQA 369
+ LSGGQ+Q L +AR L N VL+LDE TSALD + E +R
Sbjct: 150 WDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209
Query: 370 VDRL 373
DRL
Sbjct: 210 ADRL 213
|
Length = 276 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 6e-13
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 31/192 (16%)
Query: 178 AVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237
+ + +++G K ++SF +RAGE + + G G G++ LA+ L
Sbjct: 263 VLEVRNLSGGGKVRDVSF---------------TVRAGEILGIAGLVGAGRTELARALFG 307
Query: 238 LYDPLSGCILVDDHDVQNIR-LDSLRRHVGLVSQD------ITLFSGTVAENIGYRDLMT 290
SG IL+D V+ D+++ + V +D + S +AENI L
Sbjct: 308 ARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS--IAENITLASLRR 365
Query: 291 KIDMERVEHTARTANADEFVRTL---PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347
++ A A+ ++R L IG +LSGG +Q++ +AR L +
Sbjct: 366 FSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPK 421
Query: 348 VLILDEATSALD 359
VLILDE T +D
Sbjct: 422 VLILDEPTRGID 433
|
Length = 500 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 6e-13
Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH----DVQNIRLDSLR 262
+NL + A A+ G SG GK++L + L P G I+++ + I L +
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75
Query: 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
R +G V QD LF V N+ Y M K A D+ V L G +
Sbjct: 76 RRIGYVFQDARLFPHYKVRGNLRYG--MAKSM---------VAQFDKIVALL--GIEPLL 122
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
SLSGG++QR+AI RAL +L++DE ++LD
Sbjct: 123 DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 7e-13
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
LD+++ + G V +GP+G GKST K++ P SG + V DV + ++R
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQR 75
Query: 264 HVGLVSQDITLFSGT-VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
++G + + L+ V E + + + M+ R E V P+ +
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYG--MKGQLLKQRVEEMIELVGLRPEQHK---- 129
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ-----AVDR--LLG 375
+ LS G RQR+ +A+AL + VLILDE T+ LD + +R D+ +L
Sbjct: 130 -KIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILS 188
Query: 376 HHTVRE 381
H ++E
Sbjct: 189 THIMQE 194
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 7e-13
Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 14/159 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV---QNIRLDS 260
L +++LHI GE V LIG +G GK+TL L SG I+ D D+ Q ++
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI-- 77
Query: 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
+R V +V + +FS TV EN+ M ER + R E P+ +
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLA----MGGFFAERDQFQERIKWVYEL---FPRLHER 130
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
I R ++SGG++Q LAI RAL +L+LDE + L
Sbjct: 131 RI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
|
Length = 237 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-13
Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 20/165 (12%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SL 261
L +NL + GE AL+G +G GKSTL K+L +++P G I +++ + +LD +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYN--KLDHKLAA 78
Query: 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTK-------IDMERVEHTARTANADEFVRTL 313
+ +G++ Q++++ TV EN+ +TK ID + A + L
Sbjct: 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAA-------MMLL 131
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
G + + ++LS +Q L IA+ L ++ V+I+DE TS+L
Sbjct: 132 RVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 7e-13
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 9/180 (5%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDV--QNIRLDS 260
LD ++L +R GE V L G +G GKSTL K+L +Y G I + NIR D+
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR-DT 75
Query: 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
R + ++ Q++TL +VAENI + +T + R+ + A A +R L +
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENIFLGNEIT-LPGGRMAYNAMYLRAKNLLRELQLDADN 134
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTV 379
P G GGQ+Q + IA+AL + + +LILDE +S+L + E + + R L H V
Sbjct: 135 VTRPVG-DYGGGQQQLVEIAKALNKQARLLILDEPSSSL-TEKETEILLDIIRDLKAHGV 192
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 8e-13
Identities = 56/198 (28%), Positives = 78/198 (39%), Gaps = 41/198 (20%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDP--- 241
++ +++F + ++ I AGET+AL+G SG GKS A +L L
Sbjct: 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAH 67
Query: 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT------KIDME 295
SG IL D D+ LR G I + +++ MT I +
Sbjct: 68 PSGSILFDGEDLLAASERQLRGVRG---NKIGMI---------FQEPMTSLNPLHTIGKQ 115
Query: 296 RVE----HTA-RTANADEFVRTLPQGYNTHIGPRGSS---------LSGGQRQRLAIARA 341
E H A A L + +G LSGGQRQR+ IA A
Sbjct: 116 LAEVLRLHRGLSRAAARARALELLE----LVGIPEPEKRLDAYPHELSGGQRQRVMIAMA 171
Query: 342 LYQNSSVLILDEATSALD 359
L +LI DE T+ALD
Sbjct: 172 LANEPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 8e-13
Identities = 60/175 (34%), Positives = 88/175 (50%), Gaps = 42/175 (24%)
Query: 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV---------QNIRL---- 258
+R G+T+A+IG +G GKSTLAK+L + +P SG +L+DDH + Q IR+
Sbjct: 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQD 95
Query: 259 --DSL--RRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLP 314
SL R+ + + D L T DL + +++ T R V LP
Sbjct: 96 PSTSLNPRQRISQI-LDFPLRLNT--------DLEPEQREKQIIETLRQ------VGLLP 140
Query: 315 Q--GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSELL 365
Y H+ L+ GQ+QRL +ARAL V+I DEA ++LD RS+L+
Sbjct: 141 DHASYYPHM------LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLI 189
|
Length = 267 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 8e-13
Identities = 47/180 (26%), Positives = 65/180 (36%), Gaps = 22/180 (12%)
Query: 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267
++ I GE V +G +G GKST K+L L P SG + V+ D R + LR
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS---- 98
Query: 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART------ANADEFVRTLPQGYNTHI 321
I L G + DL +E ++ D L +
Sbjct: 99 ----IGLVMGQKLQLWW--DLPALDSLEVLKLIYEIPDDEFAERLDFLTEIL--DLEGFL 150
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381
LS GQR R +A AL VL LDE T LD + + + L +
Sbjct: 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD----VNAQANIREFLKEYNEER 206
|
Length = 325 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 9e-13
Identities = 50/172 (29%), Positives = 68/172 (39%), Gaps = 10/172 (5%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L ++ I GE V IGP+G GK+T K+L L P SG + V V R R
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL-VPWKRRKKFLR 94
Query: 264 HVGLV-SQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321
+G+V Q L + V + + L + + DE L
Sbjct: 95 RIGVVFGQKTQLWWDLPVID--SFYLLA---AIYDLPPARFKKRLDELSELLDLEELLDT 149
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
R LS GQR R IA AL +L LDE T LD ++ +R +
Sbjct: 150 PVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 9e-13
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 39/179 (21%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L ++ I GE V +IG +G GKSTL KL+ +Y P SG + V
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVT-------------- 87
Query: 264 HVGLVSQDITLFSG-----TVAENIGYRDL---MTKIDM-ERVEHTARTANADEFVRTLP 314
G V+ I L +G T ENI R L +T+ ++ E+V+ A +F+
Sbjct: 88 --GKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPV 145
Query: 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
+ Y S G RLA + A + +L+LDE + D+ + ++RL
Sbjct: 146 KTY-----------SSGMYARLAFSVATHVEPDILLLDEVLAVGDAA---FQEKCLERL 190
|
Length = 249 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 21/168 (12%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDH--DVQNIRLDS 260
+D ++L ++ GE ++G SG GK+TL+K++ + +P SG + V D D+ D
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 261 ---LRRHVGLVSQDITLFS-GTVAEN----IGYRDLMTKIDMERVEHTARTANADEFVRT 312
+R++G++ Q+ L+ TV +N IG +L ++ + T + DE
Sbjct: 360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDE---- 414
Query: 313 LPQGYNTHIGPR-GSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
I + LS G+R R+A+A+ L + ++ILDE T +D
Sbjct: 415 ---EKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 37/183 (20%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+ L+ + AGE + + GP+G GK+TL ++L L P +G + +QN+R +S +
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQ 75
Query: 264 HVGLVSQDITLFSG---------TVAENIG-YRDLMTKIDMERVEHTARTANADEFVRTL 313
+ L+ G T EN+ ++ + + L
Sbjct: 76 AL--------LYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-L 126
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
P G LS GQ++R+A+AR + + ILDE +ALD ++ V L
Sbjct: 127 PVGQ----------LSAGQQRRVALARLWLSPAPLWILDEPFTALD-------KEGVALL 169
Query: 374 LGH 376
Sbjct: 170 TAL 172
|
Length = 209 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 3e-12
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 22/163 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL ++ + G+ +A+ G +G GKS+L +++ +P G I +
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI----------------K 484
Query: 264 HVGLVS---QDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320
H G +S Q + GT+ +NI + D R + +E + P+ T
Sbjct: 485 HSGRISFSPQTSWIMPGTIKDNIIFG---LSYDEYRYTSVIKACQLEEDIALFPEKDKTV 541
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
+G G +LSGGQR R+++ARA+Y+++ + +LD + LD +E
Sbjct: 542 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTE 584
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 3e-12
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 12/177 (6%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
+D+LN+ + A +G +G GK+T +L L P SG +LV D++ LD++R+
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004
Query: 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
+G+ Q LF TVAE+I + + E + D G +
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLED-------TGLHHKRNE 1057
Query: 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380
LSGG +++L++A A ++ V++LDE TS +D S R D LL + + R
Sbjct: 1058 EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSR---RSIWDLLLKYRSGR 1111
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 3e-12
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 42/175 (24%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDS- 260
+L +NL I+ GE AL+GP+G GKSTLAK ++ Y+ G IL D+ ++ +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74
Query: 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
R + L Q G A +F+R + +G
Sbjct: 75 ARLGIFLAFQYPPEIPGVKNA---------------------------DFLRYVNEG--- 104
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374
SGG+++R I + L + ILDE S LD + LV + +++L
Sbjct: 105 --------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR 151
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 22/193 (11%)
Query: 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262
L ++ +NL +R E V+LIGP+G GK+T+ L Y P G IL+ ++ + +
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA 78
Query: 263 RHVGLVS--QDITLF-SGTVAENI---GYRDLMTKI--------DMERVEHTA--RTANA 306
R G+V Q + LF TV EN+ ++ L T + R E A R A
Sbjct: 79 RM-GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATW 137
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
E V G H + +L+ GQ++RL IAR + +L+LDE + L+ + +
Sbjct: 138 LERV-----GLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL 192
Query: 367 RQAVDRLLGHHTV 379
+ + L H V
Sbjct: 193 DELIAELRNEHNV 205
|
Length = 255 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-12
Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 42/185 (22%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+ + L+ + AGE + + GP+G GK+TL ++L L P SG + + + R + R
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74
Query: 264 -----HVGLVSQDITLFSGTVAENI-------GYRDLMTKIDMERVEHTARTANADEFVR 311
H+ + ++ + EN+ G + + V T
Sbjct: 75 ILYLGHLPGLKPEL-----SALENLHFWAAIHGGAQRTIEDALAAVGLTGFE-------- 121
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
LP LS GQ++RLA+AR + + ILDE T+ALD + V
Sbjct: 122 DLPAAQ----------LSAGQQRRLALARLWLSRAPLWILDEPTTALD-------KAGVA 164
Query: 372 RLLGH 376
L G
Sbjct: 165 LLAGL 169
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 5e-12
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL ++ + AGE AL+G +G GKSTL K++ + P SG + + + RL +
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPC--ARLTPAKA 83
Query: 264 H---VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
H + LV Q+ LF +V ENI + + + + ++ L
Sbjct: 84 HQLGIYLVPQEPLLFPNLSVKENILFG-------------LPKRQASMQKMKQLLAALGC 130
Query: 320 HIGP--RGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
+ SL RQ + I R L ++S +LILDE T++L
Sbjct: 131 QLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 7e-12
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 41/200 (20%)
Query: 192 NISFKYADNMPL---VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-- 246
NI + +P LD +++ I GE +A+IG +G GK+T + L L P +G I
Sbjct: 7 NIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66
Query: 247 -LVDDHD-----------------------VQNIRLDSLRRHVGLVSQ--DITLFSGTVA 280
D+ + ++ I+ +RR VG+V Q + LF T+
Sbjct: 67 IFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIK--EIRRRVGVVFQFAEYQLFEQTIE 124
Query: 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGS-SLSGGQRQRLAIA 339
++I + + + E E R A E V L + Y R LSGGQ++R+A+A
Sbjct: 125 KDIIFGPVSMGVSKE--EAKKRAAKYIELV-GLDESYL----QRSPFELSGGQKRRVALA 177
Query: 340 RALYQNSSVLILDEATSALD 359
L L+ DE T+ LD
Sbjct: 178 GILAMEPDFLVFDEPTAGLD 197
|
Length = 305 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 9e-12
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 26/186 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDS- 260
+L +NL ++ GE A++GP+G GKSTLA ++ Y+ G IL D D+ + D
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 261 LRRHVGLVSQDITLFSG-------TVAENI--GYRDLMTKIDMERVEHTARTANADEFV- 310
R + L Q G A N G R + ++ ++ A DE
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI-LPEFIKELKEKAELLGLDEEFL 137
Query: 311 -RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
R + +G SGG+++R I + L + ILDE S LD + +V +
Sbjct: 138 ERYVNEG-----------FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEG 186
Query: 370 VDRLLG 375
++ L
Sbjct: 187 INALRE 192
|
Length = 251 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-11
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 36/173 (20%)
Query: 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV----QNIRLDSLRRHVGL 267
I E + ++GP+G GK+T K+L + P G I ++ V Q I+ D
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKAD-------- 73
Query: 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHT---ARTANADEFVRTLPQGYNTHIGPR 324
+ GTV RDL++ I + H A + + L +
Sbjct: 74 -------YEGTV------RDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPE----- 115
Query: 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377
LSGG+ QR+AIA L +++ + +LDE ++ LD L+ + + R ++
Sbjct: 116 ---LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN 165
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 2e-11
Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 28/163 (17%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L ++ + GE + LIG +G GKSTL +LL +Y P SG + V
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVR-------------- 82
Query: 264 HVGLVSQDITLFSG-----TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
G VS + L G T ENI + + + R E + EF L +
Sbjct: 83 --GRVSSLLGLGGGFNPELTGRENIYLNGRL--LGLSRKEIDEKIDEIIEFSE-LGDFID 137
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ + S G + RLA A A +L++DE + D+
Sbjct: 138 LPV----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 3e-11
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 52/182 (28%)
Query: 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDS 260
+ ++ +RAGE V + G G G++ LA+ L L P SG I +D V D+
Sbjct: 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA 72
Query: 261 LRRHVGLVSQD------ITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLP 314
+R + V +D + S VAENI L
Sbjct: 73 IRAGIAYVPEDRKREGLVLDLS--VAENIALSSL-------------------------- 104
Query: 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSEL--LVRQAV 370
LSGG +Q++ +AR L ++ VLILDE T +D +++E+ L+R+
Sbjct: 105 -------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA 151
Query: 371 DR 372
D
Sbjct: 152 DA 153
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 60.5 bits (146), Expect = 3e-11
Identities = 43/168 (25%), Positives = 58/168 (34%), Gaps = 54/168 (32%)
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274
GE + ++GP G GK+TLA+ L R P G ++
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIY-------------------------- 35
Query: 275 FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334
ID E + Q +G + +S SG R
Sbjct: 36 -----------------IDGEDILEEVLD-----------QLLLIIVGGKKASGSGELRL 67
Query: 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVREK 382
RLA+A A VLILDE TS LD+ E L+ + L EK
Sbjct: 68 RLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEK 115
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 4e-11
Identities = 53/182 (29%), Positives = 78/182 (42%), Gaps = 22/182 (12%)
Query: 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRL 258
LV D LNL ++ GE +AL+G SG GKS +L L P SG IL+D + + +
Sbjct: 1 LVQD-LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSI 59
Query: 259 DSLRRHVGLVSQD-ITLFSG--TVA----ENIGYRDLMTKIDMERVEHTARTANADEFVR 311
RH+ + Q+ T F+ T+ E + ++K + +
Sbjct: 60 RG--RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEE 117
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
L P LSGG QR+ IA AL LI DE T+ LD ++ V + +
Sbjct: 118 VL------KKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169
Query: 372 RL 373
L
Sbjct: 170 EL 171
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 12/156 (7%)
Query: 215 GETVALIGPSGGGKSTLAKLLL-RLY-DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI 272
GE +A++GPSG GKSTL L R+ + +G IL ++ + L+R G V+QD
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN---RKPTKQILKR-TGFVTQDD 149
Query: 273 TLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP---RGSSL 328
L+ TV E + + L+ + A + L + NT IG RG +
Sbjct: 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRG--I 207
Query: 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
SGG+R+R++IA + N S+LILDE TS LD+ +
Sbjct: 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAY 243
|
Length = 659 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 8e-11
Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 10/168 (5%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ-NIRLDSLRR 263
L L++ G +AL+G +G GKST+ K+L +Y +G IL +V N S
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 264 HVGLVSQDITLFSG-TVAENI--GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320
+G++ Q++ L T+AENI G R+ + + R++ A AD+ + L +++
Sbjct: 80 GIGIIHQELNLIPQLTIAENIFLG-REFVNR--FGRIDWKKMYAEADKLLARLNLRFSSD 136
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL-DSRSELLVR 367
LS G++Q + IA+ L S V+I+DE T AL D+ +E L R
Sbjct: 137 K--LVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182
|
Length = 501 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 8e-11
Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 36/177 (20%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL ++L ++ G+ + L+GP+G GKSTL +++L L P G I R LR
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI---------KRNGKLR- 68
Query: 264 HVGLVSQDITLFSG---TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQG 316
+G V Q + L + TV + R K D ++RV A + Q
Sbjct: 69 -IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRV-------QAGHLIDAPMQ- 119
Query: 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
LSGG+ QR+ +ARAL +L+LDE T +D ++ + +D+L
Sbjct: 120 ----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQL 166
|
Length = 251 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 33/186 (17%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL--- 261
+ ++ +RAGE V + G +G G+S L + + L P SG IL++ DV RL
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG-RLSPRERR 332
Query: 262 ----------RRHVGLVSQDITLFSGTVAENIGYRDLMTK-------IDMERVEHTARTA 304
R GLV ++AEN+ K +D + AR
Sbjct: 333 RLGLAYVPEDRHGHGLVLDL------SLAENLVLGRHDKKPFSRGGFLDRRAIRKFAREL 386
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
+ VR SLSGG +Q+L +AR L + +LI + T LD +
Sbjct: 387 IEEFDVRA------PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIE 440
Query: 365 LVRQAV 370
+ + +
Sbjct: 441 FIHERL 446
|
Length = 501 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-10
Identities = 58/175 (33%), Positives = 81/175 (46%), Gaps = 19/175 (10%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---S 260
+L + L ++ GET+ALIG SG GKSTL +L L D SG + + + + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 261 LR-RHVGLVSQDITLFSGTVA-ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
LR +HVG V Q L A EN+ L+ +R A + L G
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRG----ESSRQSRN-GAKALLEQLGLGKR 139
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
P + LSGG++QR+A+ARA VL DE T LD RQ D++
Sbjct: 140 LDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD-------RQTGDKI 185
|
Length = 228 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-10
Identities = 62/177 (35%), Positives = 82/177 (46%), Gaps = 21/177 (11%)
Query: 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH----DVQNIRLDSLRR- 263
+L I GE L+G SG GKSTL + + L G +LV D DV N +LRR
Sbjct: 44 SLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRL 103
Query: 264 ---HVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
V +V Q L TV EN+ + M M + E R E V L Q +
Sbjct: 104 RTHRVSMVFQQFALLPWRTVEENVAFGLEMQ--GMPKAERRKRVDEQLELV-GLAQWADR 160
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV-DRLLG 375
G LSGG +QR+ +ARA + +L++DE SALD L+R + D LL
Sbjct: 161 KPG----ELSGGMQQRVGLARAFATEAPILLMDEPFSALDP----LIRTQLQDELLE 209
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+ L+ + AGE + + GP+G GK+TL ++L L PL+G +L++ + R R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 264 HVGLVSQDITLFSGTVAENIG-YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
+ L + +V EN+ + E+VE + F P
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADH---SDEQVEEALARVGLNGF-EDRPVAQ----- 125
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
LS GQ++R+A+AR L + ILDE T+ALD +A+
Sbjct: 126 -----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 35/194 (18%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
L+ L+L++ GE +IGP+G GK+T+ ++ P G +L D+ + + R
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 265 -VGLVSQDITLFSG-TVAEN--IGYRD-------LMTKIDME---RVEHTARTANADEFV 310
+G Q T+F TV EN + L ++ E R+E T +
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA 137
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL-----DSRSELL 365
L LS GQ+Q L I L Q+ +L+LDE + + + +ELL
Sbjct: 138 DRLAG-----------LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL 186
Query: 366 VRQAVDRLLGHHTV 379
L G H+V
Sbjct: 187 K-----SLAGKHSV 195
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 4e-10
Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 43/182 (23%)
Query: 192 NISF---KYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL---LRLYDPLSGC 245
NISF K +P+ L + ++ GE V ++G G G STL K L + G
Sbjct: 8 NISFTTGKGRSKIPI-LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGD 66
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT---AR 302
I + + + + VS++ F +T V T A
Sbjct: 67 IHYNGIPYKEFA-EKYPGEIIYVSEEDVHFP-----------TLT------VRETLDFAL 108
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
+EFVR +SGG+R+R++IA AL +SVL D +T LDS +
Sbjct: 109 RCKGNEFVR---------------GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153
Query: 363 EL 364
L
Sbjct: 154 AL 155
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLR 262
+L+ ++ ++ G AL+G SG GK+TL +L +G I D V LD S +
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVT--TGVITGGDRLVNGRPLDSSFQ 835
Query: 263 RHVGLVSQ-DITLFSGTVAENIGY-------RDLMTKIDMERVEHTARTANADEFVRTLP 314
R +G V Q D+ L + TV E++ + + + ME VE + + + +
Sbjct: 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAV- 894
Query: 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI-LDEATSALDSRSELLVRQAVDRL 373
+G G L+ QR+RL I L +L+ LDE TS LDS++ + + + +L
Sbjct: 895 ------VGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL 948
Query: 374 LGH 376
H
Sbjct: 949 ADH 951
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 9e-10
Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 16/161 (9%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ-NIRLDSLRR 263
LD +NL +R AL+G +G GKSTL K L +Y SG IL ++ ++L
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 264 HVGLVSQDITLF-SGTVAENIGYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNT 319
+ +V Q++ L +V +N+ TK +D +++ + A DE +
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTK-AIFDEL--------DI 124
Query: 320 HIGPR--GSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
I PR ++LS Q Q + IA+A N+ ++I+DE TS+L
Sbjct: 125 DIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL 165
|
Length = 491 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 24/167 (14%)
Query: 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV---QNIRLDSLR 262
D + L + GET+ ++G SG GKST A+ ++ L G + D+ ++ ++R
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVR 97
Query: 263 RHVGLVSQDITLFS----GTVAENIG-----YRDLMTKID-MERVEHTARTANADEFVRT 312
+ ++ QD L S T+ E I Y +++ + +RV+ V
Sbjct: 98 SDIQMIFQD-PLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLK------VGL 150
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
LP N + P SGGQ QR+ IARAL ++I DE SALD
Sbjct: 151 LPNLINRY--PH--EFSGGQCQRIGIARALILEPKLIICDEPVSALD 193
|
Length = 331 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 41/236 (17%)
Query: 144 GVGKAYNEFKQGEPAIERLFDLTKFKSKVI--EKPDAVSLDHINGDVKFCNISFKYADNM 201
V NE+ +G E + +F+ + I E+ + V++ ++ Y D
Sbjct: 301 SVRVGINEYLKGYLPEENV----RFRPEEIEFEEKPPRDDKARDTLVEYPDLKKTYGD-- 354
Query: 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL 261
L+ I GE + ++GP+G GK+T KLL +G I D+ ++++
Sbjct: 355 -FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLL-------AGVIKPDEGSEEDLK---- 402
Query: 262 RRHVGLVSQDI-TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRT-LPQGYNT 319
V Q I + GTV DL+ + +T + + N
Sbjct: 403 ---VSYKPQYISPDYDGTV------EDLLRSAIRSAFG--------SSYFKTEIVKPLNL 445
Query: 320 H--IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
+ LSGG+ QR+AIA AL + + + +LDE ++ LD ++V + + R
Sbjct: 446 EDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRF 501
|
Length = 591 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-09
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
V +SF + + D ++L + G+ A++GPSG GK+TL +L+ P G IL
Sbjct: 8 VDMRGVSFTRGNR--CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65
Query: 248 VDDHDVQNI---RLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTART 303
D ++ + RL ++R+ + ++ Q LF+ V +N+ Y EHT
Sbjct: 66 FDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY---------PLREHTQLP 116
Query: 304 ANADEFVRTLPQGYNTHIGPRG------SSLSGGQRQRLAIARALYQNSSVLILDE 353
A + + +G RG S LSGG +R A+ARA+ +++ DE
Sbjct: 117 A---PLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDE 169
|
Length = 269 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-09
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 49/191 (25%)
Query: 190 FCNISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ N+++ +L+ ++ +++ G AL+G SG GK+TL +L
Sbjct: 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVL------------ 53
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-----TVAENIGYRDLMTKIDMERVEHTAR 302
+ R+ G+++ +I + +G + GY + + D+ T R
Sbjct: 54 ------------AGRKTAGVITGEILI-NGRPLDKNFQRSTGY---VEQQDVHSPNLTVR 97
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
A F L RG LS QR+RL I L S+L LDE TS LDS++
Sbjct: 98 --EALRFSALL----------RG--LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA 143
Query: 363 ELLVRQAVDRL 373
+ + + +L
Sbjct: 144 AYNIVRFLKKL 154
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 3e-09
Identities = 54/225 (24%), Positives = 88/225 (39%), Gaps = 43/225 (19%)
Query: 168 FKS---KVIEKPDAVSLDHINGDVKFCNISFKYADNMP---LVLDQLNLHIRAGETVALI 221
K ++ P+ +S D I ++ N+ + + + L+ ++ + +I
Sbjct: 2 MDYFMKKKLKVPNPLSDDII---LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFII 58
Query: 222 GPSGGGKSTLAKLLLRLYDPLSGCILVDD---------------HDVQNI-RLDSLRRHV 265
G SG GKSTL L G I V D + I LRR V
Sbjct: 59 GNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV 118
Query: 266 GLVSQ--DITLFSGTVAENIGYRDLMTKIDMERVEHTA-----RTANADEFVRTLPQGYN 318
+V Q + LF T+ ++I + + + + A + D ++ P G
Sbjct: 119 SMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG-- 176
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
LSGGQ++R+AIA L +LI DE T+ LD + E
Sbjct: 177 ---------LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE 212
|
Length = 320 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 39/206 (18%)
Query: 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL-----------LRLY 239
N Y D +L L+ + GE ++GP+G GKSTL L+ L L+
Sbjct: 264 NNGVVSYNDRP--ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLF 321
Query: 240 DPL--SGCILVDDHDVQNIRLDSLRRHVGLVSQDITL---FSGTVAENI--GYRDLMTKI 292
SG + D +++H+G VS + L S +V I G+ D I
Sbjct: 322 GRRRGSGETIWD-----------IKKHIGYVSSSLHLDYRVSTSVRNVILSGFFD---SI 367
Query: 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRG-SSLSGGQRQRLA-IARALYQNSSVLI 350
+ + + A +++ L G + SLS GQ QRLA I RAL ++ ++LI
Sbjct: 368 GIYQAVSDRQQKLAQQWLDIL--GIDKRTADAPFHSLSWGQ-QRLALIVRALVKHPTLLI 424
Query: 351 LDEATSALDSRSELLVRQAVDRLLGH 376
LDE LD + LVR+ VD L+
Sbjct: 425 LDEPLQGLDPLNRQLVRRFVDVLISE 450
|
Length = 490 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 30/178 (16%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR--------LYDPLSGCILVDDHDVQN 255
VL LNL I+ G+ VA++G SG GK+TL +++L Y P SG + V + V
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 256 IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQ 315
+ + T+ E++ + + A ++A + R
Sbjct: 458 LIPGEY---------EPEFGEVTILEHL-RSKTGDLNAAVEILNRAGLSDAVLYRRKF-- 505
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
S LS GQ++R +A+ L + +VL++DE + LD + + V + + L
Sbjct: 506 ----------SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISEL 553
|
Length = 593 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 4e-09
Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 22/179 (12%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+ F Y D +L Q++ H+ AG + L G +G GK+TL KL+ L +P G IL +
Sbjct: 6 ELDFDYHDQ--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER- 62
Query: 252 DVQNIRLD--SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTA-NAD 307
Q+I+ D + ++ + V + T+ EN D+ H + A
Sbjct: 63 --QSIKKDLCTYQKQLCFVGHRSGINPYLTLRENC-LYDI----------HFSPGAVGIT 109
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
E R + I LS GQ++++A+ R + + +LDE ALD S L +
Sbjct: 110 ELCRLFSLEH--LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTI 166
|
Length = 200 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 35/177 (19%)
Query: 199 DNMPLV-------LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+N+PLV ++ L+ + +G + + GP+G GKS+L ++L L+ P+ G L
Sbjct: 455 ENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELW-PVYGGRLTKPA 513
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311
+ R ++ L GT+ + I Y D + DM+R R + + +
Sbjct: 514 K-GKLFYVPQRPYMTL---------GTLRDQIIYPD--SSEDMKR-----RGLSDKDLEQ 556
Query: 312 TLPQGYNTHIGPRGSS----------LSGGQRQRLAIARALYQNSSVLILDEATSAL 358
L THI R LSGG++QR+A+AR Y ILDE TSA+
Sbjct: 557 ILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAV 613
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 6e-09
Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI- 246
V+ NI+F + L+ ++ GET+A++G SG GKS A L+RL + G +
Sbjct: 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQ 74
Query: 247 ----LVDDHDVQNIRL----DSLRRHV-----GLVSQD-ITLFSG--TVAENIGYRDLMT 290
L+ Q I L + RHV ++ Q+ +T + TV E I +
Sbjct: 75 CDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIA-ESIRL 133
Query: 291 KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350
R E + VR +P+ T + LSGG RQR+ IA AL +VLI
Sbjct: 134 HQGASREEAMVEAKRMLDQVR-IPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLI 191
Query: 351 LDEATSALD 359
DE T+ALD
Sbjct: 192 ADEPTTALD 200
|
Length = 623 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-09
Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 25/180 (13%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
L L+ +RAGE + L+GP+G GKSTL + + SG I ++ L RH
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARH 73
Query: 265 VGLVSQDIT-LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323
+SQ T F+ V Y L RT ++ L + +G
Sbjct: 74 RAYLSQQQTPPFAMPVWH---YLTL-------HQPDKTRTELLNDVAGAL--ALDDKLGR 121
Query: 324 RGSSLSGGQRQRLAIARALYQ-------NSSVLILDEATSALDSRSELLVRQAVDRLLGH 376
+ LSGG+ QR+ +A + Q +L+LDE ++LD + A+DRLL
Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQ----SALDRLLSA 177
|
Length = 248 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 33/193 (17%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LS 243
DVK ++F D ++ LN +RAGET+ ++G SG GKS A L+ L +
Sbjct: 14 DVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIG 73
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID---------M 294
G + ++ N+ L + L ++ I++ ++D MT ++ M
Sbjct: 74 GSATFNGREILNLPEKELNK---LRAEQISMI---------FQDPMTSLNPYMRVGEQLM 121
Query: 295 ERVEHTARTANADEF---VRTL-----PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346
E + + A+ F VR L P+ + SGG RQR+ IA AL
Sbjct: 122 EVLMLHKGMSKAEAFEESVRMLDAVKMPEA-RKRMKMYPHEFSGGMRQRVMIAMALLCRP 180
Query: 347 SVLILDEATSALD 359
+LI DE T+ALD
Sbjct: 181 KLLIADEPTTALD 193
|
Length = 330 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 57/186 (30%), Positives = 79/186 (42%), Gaps = 43/186 (23%)
Query: 208 LNLHIRAGETVALIGPSGGGKSTL----AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L+ +RAGE + L+GP+G GKSTL A LL P SG I ++ L R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-----PGSGSIQFAGQPLEAWSAAELAR 69
Query: 264 HVGLVSQDIT-LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQ-----GY 317
H +SQ T F+ V + Y L H + L + G
Sbjct: 70 HRAYLSQQQTPPFAMPVFQ---YLTL----------HQPDKTRTEAVASALNEVAEALGL 116
Query: 318 NTHIGPRGSSLSGG--QRQRLA-----IARALYQNSSVLILDEATSALDSRSELLVRQ-- 368
+ +G + LSGG QR RLA + + +L+LDE ++LD V Q
Sbjct: 117 DDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD------VAQQA 170
Query: 369 AVDRLL 374
A+DRLL
Sbjct: 171 ALDRLL 176
|
Length = 248 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 53/184 (28%), Positives = 74/184 (40%), Gaps = 41/184 (22%)
Query: 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQD 271
R G+ V ++GP+G GKST K+L +G + N L R+ S D
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKIL-------AGEL------KPN-----LGRYEDPPSWD 138
Query: 272 --ITLFSGT---------------VAENIGYRDLMTKIDMERV----EHTARTANADEFV 310
I F GT Y DL+ K+ +V + DE V
Sbjct: 139 EVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVV 198
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
L G + S LSGG+ QR+AIA AL +++ V DE +S LD R L + +
Sbjct: 199 ERL--GLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVI 256
Query: 371 DRLL 374
L
Sbjct: 257 RELA 260
|
Length = 591 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 20/187 (10%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH-DVQNIRLDSLRR 263
L+ L+ + GE LIGP+G GK+TL ++ P G +L D D+ + + R
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 264 H-VGLVSQDITLFSG-TVAENIGYRDLMTKIDME---------RVEHTARTANADEFVRT 312
+G Q T+F TV EN+ +L D R E R +
Sbjct: 81 AGIGRKFQKPTVFENLTVRENL---ELALNRDKSVFASLFARLRAEERRRIDELLATIGL 137
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372
+ + LS GQ+Q L I L Q+ +L+LDE + + + +
Sbjct: 138 GDERDRL-----AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192
Query: 373 LLGHHTV 379
L G H++
Sbjct: 193 LAGKHSI 199
|
Length = 249 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-08
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 28/171 (16%)
Query: 197 YADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN- 255
++ N V L+ H+ AGE + + G +G GK+TL ++L L SG I +D
Sbjct: 19 FSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG 78
Query: 256 --IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA-----RTANADE 308
R + H+ + D++ EN+ + + +++ +A D
Sbjct: 79 DRSRFMAYLGHLPGLKADLSTL-----ENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDT 133
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
VR LS GQ++RLA+AR + + +LDE + LD
Sbjct: 134 LVR---------------QLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 35/180 (19%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ N+S + D L++D L+ + G V +IGP+G GKSTL +++ P SG I
Sbjct: 323 IEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK 380
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI-GYRDLMTKIDMERVEHTARTANA 306
+ + V+ +D R + + TV E I G D+ I + + E +R
Sbjct: 381 IGE-TVKLAYVDQSRDALDP--------NKTVWEEISGGLDI---IQLGKREVPSR---- 424
Query: 307 DEFVRTLPQGYNTHIGPRGS-------SLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
Y +GS LSGG+R R+ +A+ L +VL+LDE T+ LD
Sbjct: 425 ---------AYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 2e-08
Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 31/181 (17%)
Query: 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262
++ L+ + AGE V + GP+G GK++L ++L L P +G +L ++ R D
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYH 73
Query: 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT-ARTANADEFVRTLPQGYNTHI 321
+ + L+ G G + +T ++ R + + L Q +
Sbjct: 74 QDL--------LYLGHQP---GIKTELTALENLRFYQRLHGPGDDEALWEALAQ-----V 117
Query: 322 GPRG------SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375
G G LS GQ++R+A+AR + + ILDE +A+D +Q V RL
Sbjct: 118 GLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID-------KQGVARLEA 170
Query: 376 H 376
Sbjct: 171 L 171
|
Length = 204 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 6e-08
Identities = 58/198 (29%), Positives = 85/198 (42%), Gaps = 23/198 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ F+Y D VL LNL L+G +G GKSTL L L P G +L
Sbjct: 6 DLWFRYQDEP--VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63
Query: 252 --DVQNIRLDSLRRHVGLVSQDI--TLFSGTVAENIGY--RDLMTKID--MERVEHTART 303
D L +LR+ V V QD +F + +I + R+L RV+
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTL 123
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
+A F Q LS GQ++R+AIA AL + L+LDE T+ LD
Sbjct: 124 VDAQHFRHQPIQ-----------CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172
Query: 364 LLVRQAVDRLL--GHHTV 379
+ + R++ G+H +
Sbjct: 173 TQMIAIIRRIVAQGNHVI 190
|
Length = 271 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 7e-08
Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 34/195 (17%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL--RLYDPLSGCILVDDHDVQNIRLDSL 261
+L +NL ++ GE A++GP+G GKSTL+K + Y+ SG IL D+ + D
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDE- 73
Query: 262 RRHVGL------------VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA--- 306
R GL VS F + +D+ + A
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLE--FLRSALNARRSARGEEPLDLLDFLKLLKAKLALLG 131
Query: 307 --DEFV-RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
+EF+ R++ +G+ SGG+++R I + + ILDE S LD +
Sbjct: 132 MDEEFLNRSVNEGF-----------SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDAL 180
Query: 364 LLVRQAVDRLLGHHT 378
+V + ++RL
Sbjct: 181 KIVAEGINRLREPDR 195
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 63/217 (29%), Positives = 83/217 (38%), Gaps = 65/217 (29%)
Query: 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRH 264
+ + GE + ++G SG GK+TL L P +G + D Q L +L RR
Sbjct: 26 SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR 85
Query: 265 V-----GLVSQDIT--LFSGTVA-ENIGYRDLM------------TKID-MERVE-HTAR 302
+ G V Q L A NIG R LM T D +ERVE AR
Sbjct: 86 LLRTEWGFVHQHPRDGLRMQVSAGGNIGER-LMAVGARHYGDIRATAGDWLERVEIDAAR 144
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--- 359
D+ T SGG +QRL IAR L + ++ +DE T LD
Sbjct: 145 I---DDLPTTF---------------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSV 186
Query: 360 -SRSELLVRQ----------------AVDRLLGHHTV 379
+R L+R AV RLL H +
Sbjct: 187 QARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLL 223
|
Length = 258 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ ++ + D +D ++ + GE L+GP+G GK+T +++L L +P G I
Sbjct: 3 LEIEGVTKSFGDKK--AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY----RDLMTKIDM-ERVEHTAR 302
+ + S + IGY R L K+ + +++++ A
Sbjct: 61 WNGGPL----------------------SQEIKNRIGYLPEERGLYPKMTVEDQLKYLAE 98
Query: 303 TANAD--EFVRTLPQ-----GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
E + L + LS G +Q++ A+ +LILDE
Sbjct: 99 LKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF 158
Query: 356 SALDSRSELLVRQAVDRL 373
S LD + L++ A+ L
Sbjct: 159 SGLDPVNVELLKDAIFEL 176
|
Length = 300 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 36/171 (21%)
Query: 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267
++L +RAGE + L G G G++ LA+ L L G I+++ ++ N + R GL
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEI-NALSTAQRLARGL 340
Query: 268 V-----SQDITLF---------SGTVAENIGYRDLMTKIDMERVE--HTA---RTANADE 308
V Q L+ G+ + + +E A + +A++
Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFW-IKPARENAVLERYRRALNIKFNHAEQ 399
Query: 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
RT LSGG +Q++ IA+ L + +LI+DE T +D
Sbjct: 400 AART---------------LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
|
Length = 510 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-07
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376
P+ LSGG+ QR+AIA AL +N++ + DE ++ LD L +A+ RL
Sbjct: 67 PQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEE 120
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 5/141 (3%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M L+L+ ++P + L+ A L ++LRK++++ + A + E L I VKA
Sbjct: 136 MFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKA 195
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKA---LIPQTVQLIYFGALFILCGGSLLVSGG 121
E E R+ + E +K T + Y L G+ LV G
Sbjct: 196 FGREEYELERY--DKALEDAEKAGIKKAITAGLSFGITQLISYLSYALALWFGAYLVISG 253
Query: 122 SFDGCSLVSFITSLVFMIEPI 142
++ +F++ + + P+
Sbjct: 254 GLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 6e-07
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL--RLYDPLSGCILVDDHDVQNIRLDSL 261
+L LNL I GE A++GP+G GKSTL+K++ Y L G IL + ++ +
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE-E 80
Query: 262 RRHVGL 267
R H+G+
Sbjct: 81 RAHLGI 86
|
Length = 252 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 8e-07
Identities = 52/190 (27%), Positives = 77/190 (40%), Gaps = 55/190 (28%)
Query: 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG------CILVDDHDVQNIRLDSLRRHV 265
+ G+ ++GP+G GK+T K+L SG ++ + L+R
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKIL-------SGELIPNLGDYEEEPSWDEV----LKRFR 144
Query: 266 G---------LVSQDIT-------------LFSGTVAENIGYRDLMTKIDMERVEHTART 303
G L + +I +F G V R+L+ K+D ER
Sbjct: 145 GTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKV------RELLKKVD-ER------- 190
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
DE V L G + S LSGG+ QR+AIA AL +++ DE TS LD R
Sbjct: 191 GKLDEVVERL--GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQR 248
Query: 364 LLVRQAVDRL 373
L V + + L
Sbjct: 249 LNVARLIREL 258
|
Length = 590 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 8e-07
Identities = 60/201 (29%), Positives = 86/201 (42%), Gaps = 57/201 (28%)
Query: 193 ISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD-- 250
+SF A PL LD LHI E V L+G +G GKSTL K+ L+G +L+DD
Sbjct: 11 LSFSDA---PL-LDNAELHIEDNERVCLVGRNGAGKSTLMKI-------LNGEVLLDDGR 59
Query: 251 ----HDVQNIRL--DSLRRHVGLVSQDITLFSGTVAENIG--------YRDLMTKID--- 293
D+ RL D R G T++ VAE I Y D+ ++
Sbjct: 60 IIYEQDLIVARLQQDPPRNVEG------TVYD-FVAEGIEEQAEYLKRYHDISHLVETDP 112
Query: 294 -------MERVEHTARTANADEF----VRTLPQ-GYNTHIGPRGSSLS---GGQRQRLAI 338
+ +++ N + L Q G + ++LS GG ++ A+
Sbjct: 113 SEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPD-----AALSSLSGGWLRKAAL 167
Query: 339 ARALYQNSSVLILDEATSALD 359
RAL N VL+LDE T+ LD
Sbjct: 168 GRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 8e-07
Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 63/230 (27%)
Query: 171 KVIEKPDAVSLDHINGDVKFCNISFKYADNMP----------------LVLDQLNLHIRA 214
K++E+ + ++ H++ F SF+ +++P ++LD + L++
Sbjct: 281 KMLERMELIAPAHVDNPFHF---SFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVP 337
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274
G + L+G +G GKSTL KLL P+SG I + + I+L G +Q
Sbjct: 338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL----AKGIKL-------GYFAQHQLE 386
Query: 275 FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRG--------- 325
F + D ++H AR A + L Q ++G G
Sbjct: 387 F--------------LRADESPLQHLARLAP-----QELEQKLRDYLGGFGFQGDKVTEE 427
Query: 326 -SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374
SGG++ RL +A ++Q ++L+LDE T+ LD L +RQA+ L
Sbjct: 428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD----LDMRQALTEAL 473
|
Length = 638 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 49/185 (26%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N++ + DN PL LNL + AGE +A+IG +G GK+TL + L+ +P SG + +
Sbjct: 324 NLTKGF-DNGPL-FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE- 380
Query: 252 DVQNIRLDSLRRHVGLVSQD--------ITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
N +G +QD +TLF D M++ R
Sbjct: 381 ---NAN-------IGYYAQDHAYDFENDLTLF-----------DWMSQW---------RQ 410
Query: 304 ANADEFV------RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
DE R L + I LSGG++ R+ + + Q +VL++DE T+
Sbjct: 411 EGDDEQAVRGTLGRLLFSQDD--IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNH 468
Query: 358 LDSRS 362
+D S
Sbjct: 469 MDMES 473
|
Length = 530 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 18/167 (10%)
Query: 212 IRAGETVALIGPSGGGKSTLAKLLL-RLYDPL---SGCILVDDHDVQNIRLDSLRRHVGL 267
I+ GE ++G G G STL K + G I D + I+ R V
Sbjct: 84 IKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVY 142
Query: 268 VSQ-DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA----DEFVRT--LPQGYNTH 320
++ D+ TV E + + K R + +R A D ++ T L NT
Sbjct: 143 NAETDVHFPHLTVGETLDFAARC-KTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTK 201
Query: 321 IGP---RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
+G RG +SGG+R+R++IA A + + D AT LDS + L
Sbjct: 202 VGNDFVRG--VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATAL 246
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 48/174 (27%)
Query: 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV------QNIRLDSLRRHV 265
I GE + ++GP+G GK+T AKLL + P G + D ++ Q I+ D
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV---DPELKISYKPQYIKPD------ 412
Query: 266 GLVSQDIT--LFSGTVAENIG----YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
D T ++ +++G +++ + +ER+ D+ V+ L
Sbjct: 413 ----YDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERL--------LDKNVKDL------ 454
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
SGG+ QR+AIA L +++ + +LDE ++ LD L V +A+ R+
Sbjct: 455 ---------SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRI 499
|
Length = 590 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 19/167 (11%)
Query: 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL---- 261
++ + GE + ++G SG GK+TL K + P +G + D Q L ++
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 262 RRHV-----GLVSQ---DITLFSGTVAENIGYRDLMTKIDMERVEHTART-ANADEFVRT 312
RR + G V Q D + NIG R + H A A +++
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG-----ARHYGNIRAEAQDWLEE 137
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ I + SGG +QRL IAR L ++ +DE T LD
Sbjct: 138 VEID-LDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 183
|
Length = 258 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 52/221 (23%), Positives = 84/221 (38%), Gaps = 78/221 (35%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLL--LRLYDPLSGCIL-------------- 247
VL ++ I GE + ++G SG GKS L +L + Y+P SG I+
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 248 --------------VDDHDVQNIRLD-----SLRRHVGLVSQDITLFSG--TVAEN---- 282
++ +V L +R+ + ++ Q G TV +N
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 283 ---IGYR---------DLMTKIDME-RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329
IGY DL+ + + R+ H AR LS
Sbjct: 135 LEEIGYEGKEAVGRAVDLIEMVQLSHRITHIAR------------------------DLS 170
Query: 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
GG++QR+ +AR L + + + DE T LD ++ LV A+
Sbjct: 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNAL 211
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-06
Identities = 44/167 (26%), Positives = 63/167 (37%), Gaps = 23/167 (13%)
Query: 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RR 263
++ + GE + ++G SG GKSTL L P G + L L RR
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81
Query: 264 HV-----GLVSQ---DITLFSGTVAENIGYRDLMTKIDMERVEHTART-ANADEFVRT-- 312
+ G V Q D + NIG R + H A A +++
Sbjct: 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG-----ARHYGNIRATAQDWLEEVE 136
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ I + SGG +QRL IAR L ++ +DE T LD
Sbjct: 137 IDPT---RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 180
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 8e-06
Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 37/177 (20%)
Query: 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--LDSLRRHVG 266
+ +RAGE V L G G G+S L KLL +G + +D + +IR D++R +
Sbjct: 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI-DIRSPRDAIRAGIM 331
Query: 267 LVSQD------ITLFSGTVAENIGYRDLMTKIDMERVEHTAR--------TANADEFVRT 312
L +D I + S VA+NI I R A NAD F+R+
Sbjct: 332 LCPEDRKAEGIIPVHS--VADNI-------NISARRHHLRAGCLINNRWEAENADRFIRS 382
Query: 313 L----PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--SRSE 363
L P I +LSGG +Q+ + R L ++ V++LDE T +D ++ E
Sbjct: 383 LNIKTPSR-EQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE 434
|
Length = 501 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-06
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 31/180 (17%)
Query: 213 RAGETVALIGPSGGGKSTLAKLLL--------RLYDPLSGCILVDDH---DVQN----IR 257
R G+ + L+GP+G GKST K+L + DP ++D+ ++QN +
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
++ V + Q + L V +G +L+ K D DE V L
Sbjct: 84 EGDVK--VIVKPQYVDLIPKAVKGKVG--ELLKKKD--------ERGKLDELVDQLEL-- 129
Query: 318 NTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376
H+ R LSGG+ QR+AIA AL +++ DE +S LD + L + + L
Sbjct: 130 -RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED 188
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 8e-06
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 45/184 (24%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ F + SF Y PL+ LN I +A++GP+G GKST+ KL+ P SG +
Sbjct: 509 ISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV- 566
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK--IDMERVEHTARTAN 305
S + + + SQ ++ DL + + M R
Sbjct: 567 ----------FRSAKVRMAVFSQ----------HHVDGLDLSSNPLLYMMRC-------- 598
Query: 306 ADEFVRTLPQGYNTHIGPRGSS----------LSGGQRQRLAIARALYQNSSVLILDEAT 355
F Q H+G G + LSGGQ+ R+A A+ ++ +L+LDE +
Sbjct: 599 ---FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPS 655
Query: 356 SALD 359
+ LD
Sbjct: 656 NHLD 659
|
Length = 718 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 193 ISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238
++F+ + V++ ++L I AGET+AL+G SG GKS A +LRL
Sbjct: 13 VAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL 58
|
Length = 529 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 11/163 (6%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVDDHDVQNIR--LDSL 261
+D ++ +R GE + + G G G++ L + L Y G + ++ V +IR ++
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV-DIRNPAQAI 334
Query: 262 RRHVGLVSQD-----ITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQG 316
R + +V +D I G V +NI L + R++ A ++ L
Sbjct: 335 RAGIAMVPEDRKRHGIVPILG-VGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393
Query: 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ P G LSGG +Q+ +A+ L N VLILDE T +D
Sbjct: 394 TASPFLPIGR-LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 21/158 (13%)
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274
G AL+G +G GKSTL K L+ SG I + + +L +V S+++
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ-SEEVDW 91
Query: 275 FSGTVAENI---------GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRG 325
+ E++ G+ K D + V + EF + IG
Sbjct: 92 SFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEF-------RHRQIG--- 141
Query: 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
LSGGQ++R+ +ARA+ Q V++LDE + +D ++E
Sbjct: 142 -ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178
|
Length = 272 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 51/184 (27%)
Query: 213 RAGETVALIGPSGGGKSTLAKLL------------LRL---------YDPLSG-CILVDD 250
R G AL+G SG GK+TL +L +R+ + +SG C D
Sbjct: 904 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDI 963
Query: 251 HDVQNIRLDSLRRHVGLVSQDITLFSG--TVAENIGYRDLMTKID--MERVEHTARTANA 306
H Q +SL ++S + + + + M +D ME VE N
Sbjct: 964 HSPQVTVRESL------------IYSAFLRLPKEVSKEEKMMFVDEVMELVE----LDNL 1007
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+ + LP G G LS QR+RL IA L N S++ +DE TS LD+R+ +V
Sbjct: 1008 KDAIVGLP-------GVTG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1058
Query: 367 RQAV 370
+ V
Sbjct: 1059 MRTV 1062
|
Length = 1470 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 40/188 (21%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+L ++L G + ++G +G GKSTL +++ + +G I+
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----GIK------ 69
Query: 264 HVGLVSQDITL-FSGTVAENI--GYRDLMTKID----------------------MERVE 298
VG + Q+ L + TV EN+ G ++ +D ++
Sbjct: 70 -VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQ 128
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRG----SSLSGGQRQRLAIARALYQNSSVLILDEA 354
A+A + R L + P + LSGG+R+R+A+ R L +L+LDE
Sbjct: 129 EIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
Query: 355 TSALDSRS 362
T+ LD+ S
Sbjct: 189 TNHLDAES 196
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 23/170 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-GCILVDDHDVQNIR--LDS 260
+D ++ +R GE + + G G G++ L + L Y G I +D V IR +
Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPV-KIRNPQQA 335
Query: 261 LRRHVGLVSQD------ITLFSGTVAENIGYRDL-----MTKIDMERVEHTARTANADEF 309
+ + + +V +D + + V +NI L ++ID T +
Sbjct: 336 IAQGIAMVPEDRKRDGIVPVMG--VGKNITLAALDRFTGGSRIDDAAELKTILESIQRLK 393
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
V+T + LSGG +Q+ +A+ L N +LILDE T +D
Sbjct: 394 VKT------ASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
|
Length = 506 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 21/168 (12%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSLRR 263
++ ++ +R GE + + G G G++ L K+L SG + +D H+V D L
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 264 HVGLVSQDIT---LFSG-TVAENIGYRDLMTKID-----MERVEHTARTANADEFVRTLP 314
+ +S+D L G +V EN+ +T + ++H +F+R
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMS----LTALRYFSRAGGSLKHADEQQAVSDFIRL-- 381
Query: 315 QGYNTHIGPRGSS---LSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+N + LSGG +Q++AIAR L VLILDE T +D
Sbjct: 382 --FNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 40/196 (20%)
Query: 194 SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253
+F+ +D L L L + AG++ A +G +G GKS LA+ L LSG +
Sbjct: 10 TFRLSDTKTLQLPSL--TLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHI 67
Query: 254 QNIRLDSL---------RRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTA 304
+ + L R + ++S T AE I + V+ AR
Sbjct: 68 TRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEII----------QDEVKDPARCE 117
Query: 305 N-ADEFVRTLPQGYNTHIGP----RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A +F I R LS G+ ++ + +AL +LILDE LD
Sbjct: 118 QLAQQF----------GITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLD 167
Query: 360 SRSELLVRQAVDRLLG 375
S RQ + LL
Sbjct: 168 VAS----RQQLAELLA 179
|
Length = 490 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 9e-05
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236
LD L + G+TVAL+G SG GKSTL LL
Sbjct: 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALL 216
|
Length = 356 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
D++ I FK + +D++++ + GE L+G SG GKS +AK + + + +
Sbjct: 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NWRV 63
Query: 247 LVDDHDVQNIRLDSL--RRHVGLVSQDITL-FSGTV-----AENIGYRDLMTKIDMERVE 298
D +I L L R LV ++++ F +E +G R L+ I +
Sbjct: 64 TADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVG-RQLIQNIPAWTYK 122
Query: 299 ------HTARTANADEFVRTLPQGYNTHIGPRGS---SLSGGQRQRLAIARALYQNSSVL 349
R A E + + G H S L+ G+ Q++ IA AL +L
Sbjct: 123 GRWWQRFGWRKRRAIELLHRV--GIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLL 180
Query: 350 ILDEATSALDSRSELLVRQAVDRL 373
I DE T++++ ++ + + + RL
Sbjct: 181 IADEPTNSMEPTTQAQIFRLLSRL 204
|
Length = 330 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 328 LSGGQRQRLAIARALYQNSSVLILDEATSALD 359
LSGG+RQR+ IA AL +LI DE T+ALD
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALD 188
|
Length = 529 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 47/199 (23%)
Query: 184 INGDVKFCNISFKYA-DNMPL-----------------VLDQLNLHIRAGETVALIGPSG 225
+N VKF +++ KY N P L+ ++ + GE V +IG +G
Sbjct: 1 MNYKVKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNG 60
Query: 226 GGKSTLAKLLLRLYDPLSGCILVDDHDVQN----IRLDSLRRHVGLVSQDITLFSGTVAE 281
GKSTL+ L+ + P G + D++ I + S GL Q +G E
Sbjct: 61 SGKSTLSNLIAGVTMPNKGTV-----DIKGSAALIAISS-----GLNGQ----LTGI--E 104
Query: 282 NIGYRDLMTKIDMERV-EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340
NI + LM + E++ E + + + Q T+ S G + RL A
Sbjct: 105 NIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTY--------SSGMKSRLGFAI 156
Query: 341 ALYQNSSVLILDEATSALD 359
+++ N +L++DEA S D
Sbjct: 157 SVHINPDILVIDEALSVGD 175
|
Length = 549 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRS-ELL 365
LSGG+R RL +AR + S++LILDE T+ LD + ELL
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELL 479
|
Length = 635 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 6e-04
Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 37/182 (20%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-RLYDP-------LSGCILVDDHDVQN 255
+L L+L I G AL+G +G GKSTL K L L ++G + ++ +
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 256 I---RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTAR---TANADEF 309
I RL LR + +Q FS R+++ + R H R + D
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAFSA--------REIVL---LGRYPHARRAGALTHRDGE 124
Query: 310 V--RTLPQ-GYNTHIGPRGSSLSGGQRQRLAIARALYQ---------NSSVLILDEATSA 357
+ + L G +G ++LSGG+ R+ AR L Q L+LDE T+A
Sbjct: 125 IAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAA 184
Query: 358 LD 359
LD
Sbjct: 185 LD 186
|
Length = 272 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 9e-04
Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 20/174 (11%)
Query: 198 ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-- 255
+ P + D ++ + GE + + G G ++ + + L + + +G I + + N
Sbjct: 258 SLRQPSIRD-VSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHN 316
Query: 256 ----IR-----LDSLRRHVGLVSQ-DITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
I + RR G+ + DI F+ ++ Y++ + +D R++ +
Sbjct: 317 ANEAINHGFALVTEERRSTGIYAYLDIG-FNSLISNIRNYKNKVGLLDNSRMKSDTQWVI 375
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
V+T G+ T IG SLSGG +Q++ I R L +L+LDE T +D
Sbjct: 376 DSMRVKT--PGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGID 423
|
Length = 491 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.001
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
+ LSGG+R+R+A+ R L + +L+LDE T+ LD+ S
Sbjct: 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
G+ +ALIGP+G GK+TL KL+L SG I
Sbjct: 345 GDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376
|
Length = 635 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ SGG R R+A+ARAL+ +L+LDE T+ LD
Sbjct: 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
|
Length = 718 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 328 LSGGQRQRLAIARALYQNSSVLILDEATSALD 359
LSGG+R RL +A+ L Q +VL+LDE T+ LD
Sbjct: 446 LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
Length = 556 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 36/163 (22%), Positives = 55/163 (33%), Gaps = 60/163 (36%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAK------LLLRLYDPLSGCILVDDHDVQNIRL 258
L L++ I V + G SG GKSTL RL L + + I +
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLP---KFSRNKL--IFI 65
Query: 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318
D L+ + + +GY L G
Sbjct: 66 DQLQFLIDV--------------GLGY---------------------------LTLGQK 84
Query: 319 THIGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALD 359
S+LSGG+ QR+ +A L+ ++ ILDE ++ L
Sbjct: 85 L------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 33/185 (17%), Positives = 50/185 (27%), Gaps = 64/185 (34%)
Query: 200 NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD 259
P ++ G + GP+G GKST+ + G L R
Sbjct: 6 RFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAI--------GLALGGAQSATRRRSG 57
Query: 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319
+ E + T Q
Sbjct: 58 VKAGC-----------------IVAAVSA-------------------ELIFTRLQ---- 77
Query: 320 HIGPRGSSLSGGQRQRLAIARAL----YQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375
LSGG+++ A+A L + + ILDE LD R QA+ +
Sbjct: 78 --------LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRD----GQALAEAIL 125
Query: 376 HHTVR 380
H V+
Sbjct: 126 EHLVK 130
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235
+L LNL +R GE A++GP+G GKSTL+ L
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATL 47
|
Length = 248 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 20/67 (29%)
Query: 323 PRGSSLSGGQRQ------RLAIARALYQNSSVLILDEATSALD-------------SRSE 363
RG SGG++ RLA+A N +L LDE T+ LD R
Sbjct: 112 MRGR-CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS 170
Query: 364 LLVRQAV 370
Q +
Sbjct: 171 QKNFQLI 177
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 48/183 (26%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-P---LSGCILVDDHDVQNIRLDS 260
+D+++ ++ GE V ++G SG GKS + ++ L D P ++ + + D+Q I +
Sbjct: 23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS-EK 81
Query: 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKID---------MERVE------HTARTAN 305
RR+ LV ++ + ++D MT ++ ME ++ R
Sbjct: 82 ERRN--LVGAEVAMI---------FQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQR 130
Query: 306 ADEFVRTLPQGYNTHIG-PRGSS--------LSGGQRQRLAIARALYQNSSVLILDEATS 356
A + + +G P +S LSGG QR+ IA A+ +LI DE T+
Sbjct: 131 AIDLL--------NQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTT 182
Query: 357 ALD 359
ALD
Sbjct: 183 ALD 185
|
Length = 326 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 25/177 (14%)
Query: 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIR 257
PLV ++L ++ G +AL+G SG GKS L + +G +L+D + +
Sbjct: 17 PLV-HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG---KPVA 72
Query: 258 LDSLR-RHVGLVSQDI-TLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD---EFVRT 312
+LR R + + Q+ + F+ + R+ + + T A E
Sbjct: 73 PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAAR 132
Query: 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369
+ + Y +SGG QR+ IA AL + +I DE T+ LD +V QA
Sbjct: 133 VLKLY-------PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD-----VVAQA 177
|
Length = 254 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.004
Identities = 54/250 (21%), Positives = 102/250 (40%), Gaps = 49/250 (19%)
Query: 156 EPAIERLFD----LTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLH 211
EPA E +FD + + + ++I + + +N K Y+ +D+L +
Sbjct: 1908 EPAKEPIFDEDDDVAEERQRIISGGNKTDILRLNELTKV------YSGTSSPAVDRLCVG 1961
Query: 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQD 271
+R GE L+G +G GK+T K+ L+G V D + +
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKM-------LTGDTTVTSGDAT------------VAGKS 2002
Query: 272 ITLFSGTVAENIGY-------RDLMTKIDMERVEHTARTANADEFVRTL-----PQGYNT 319
I V +N+GY DL+T + + R A+E + G +
Sbjct: 2003 ILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL 2062
Query: 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL--------VRQAVD 371
+ + SGG +++L+ A AL +++LDE T+ +D ++ + +R+
Sbjct: 2063 YADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRA 2122
Query: 372 RLLGHHTVRE 381
+L H++ E
Sbjct: 2123 VVLTSHSMEE 2132
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.004
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
S SGG R RL +A+AL S +L+LDE T+ LD
Sbjct: 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.98 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.98 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.98 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.98 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.97 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.96 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.96 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.95 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.95 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.94 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.94 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.94 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.94 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.94 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.93 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.93 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.92 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.92 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.92 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.92 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.91 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.9 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.9 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.89 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.88 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.87 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.86 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.85 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.85 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.84 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.84 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.84 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.84 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.83 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.81 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.77 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.77 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.77 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.76 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.75 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.73 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.73 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.72 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.71 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.7 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.69 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.66 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.65 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.61 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.59 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.56 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.53 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.52 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.51 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.51 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.5 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.5 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.49 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.45 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.44 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.36 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.35 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.34 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.32 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.32 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.22 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.2 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.18 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 99.16 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.16 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.12 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.1 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.1 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.06 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.06 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.0 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.99 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.97 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.92 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.91 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.89 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 98.89 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.88 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 98.81 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 98.81 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.76 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.75 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.73 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.72 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.68 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.68 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.66 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.66 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.65 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.65 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.61 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.59 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.58 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.55 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.55 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.54 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 98.54 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.53 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.48 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.48 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.47 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.46 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.46 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.44 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.43 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.41 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.4 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.38 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.38 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.36 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 98.31 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 98.31 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.3 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.28 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.28 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.27 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.27 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.25 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.24 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.24 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.22 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 98.22 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.21 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.21 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.2 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 98.2 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.19 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 98.19 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 98.16 | |
| PLN02318 | 656 | phosphoribulokinase/uridine kinase | 98.16 | |
| cd02026 | 273 | PRK Phosphoribulokinase (PRK) is an enzyme involve | 98.12 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.12 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.12 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.11 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.07 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 98.06 |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-87 Score=676.26 Aligned_cols=377 Identities=41% Similarity=0.580 Sum_probs=347.0
Q ss_pred EeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHH
Q 016798 2 ATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHS 81 (382)
Q Consensus 2 ~~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 81 (382)
..+|+++||.|++++++.+|+++++..++++..++.+++.+++.++.++...|.+.+++|||+|+.|..+..||.+..++
T Consensus 280 ~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~ 359 (716)
T KOG0058|consen 280 LGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLRE 359 (716)
T ss_pred HHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 82 DLCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (382)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (382)
..+...+.......+..... ......+.++++|++++..|++|.|.+++|+.|..++-.++..++..|.++.++..+.+
T Consensus 360 ~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~ 439 (716)
T KOG0058|consen 360 VLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASE 439 (716)
T ss_pred HHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 77776555544444333333 33455778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 161 RLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 161 ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
|++++++.+|.........+. ...|.|+|+||+|+||.++ .++|+|+||+|+|||++|+|||||+||||++++|.+||
T Consensus 440 rvFel~dr~P~i~~~G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 440 RVFELMDRKPRIPLTGTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred HHHHHhccCCCCCCCCccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 999999988765443221222 5678999999999999763 57999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||+|+++++..+||++||+|.|||.||++||+|||.||.+ +.++|++++|++.++.++||..+|+||||
T Consensus 519 ~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T 596 (716)
T KOG0058|consen 519 DPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNT 596 (716)
T ss_pred CCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCcccccc
Confidence 9999999999999999999999999999999999999999999999986 67999999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+||+|.+|||||||||||||||++||.||||||+|||||.++|..|+++|.+..++||||.
T Consensus 597 ~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlv 658 (716)
T KOG0058|consen 597 VVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLV 658 (716)
T ss_pred ccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999973
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-82 Score=657.68 Aligned_cols=377 Identities=37% Similarity=0.531 Sum_probs=352.9
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.|++++++.+|+++++..++.+.+++..++..+..++.++.+.|.+.|++|+|+.+.|..+..+|++...++
T Consensus 286 ~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~ 365 (709)
T COG2274 286 AVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQ 365 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.....+..+.......+..++ .+..++++|+|+++|.+|++|+|++++|.++..++..|+.++...|.++++...+.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~r 445 (709)
T COG2274 366 VNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALER 445 (709)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877766655555543 4568899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.++|...+......+...++|+++||+|+|+.+++++|+|+||+|++||++||||+||||||||+|+|+|+|+|
T Consensus 446 L~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 446 LGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred HHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 99999988875443322344556789999999999998777899999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+.++++.++|++|+||+||+++|+|||+|||++++| +.++|++.+||+.+++++||.++|+||||+|
T Consensus 526 ~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p--~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v 603 (709)
T COG2274 526 QQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP--EATDEEIIEAAQLAGAHEFIENLPMGYDTPV 603 (709)
T ss_pred CCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999987 4679999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+|||||||||+|||||+++|+||||||||||||+++|+.|.++|.+..++||+|.
T Consensus 604 ~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~ 663 (709)
T COG2274 604 GEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVII 663 (709)
T ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999999999999999999999999984
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-77 Score=618.00 Aligned_cols=375 Identities=28% Similarity=0.346 Sum_probs=327.3
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGER-LRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHS 81 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 81 (382)
++|+++||.+++++++.+|++.++..++.++ .++..++.++..+++.+.+.|.++|+++||+|+.++.+.++|++..++
T Consensus 146 ~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~ 225 (529)
T TIGR02868 146 AAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRE 225 (529)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHH
Confidence 4578899999999988888877766555444 456667778888999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 82 DLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (382)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (382)
..+...+..+.......+..+. .+..++++++|++++.+|.+|+|.+++++.+...+..|+..+...+..++.+..+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (529)
T TIGR02868 226 LLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAE 305 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666665555444333322 344566678899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCC--CCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 161 RLFDLTKFKSKVIEKPD--AVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 161 ri~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
|+.++++.+++...... .....+..+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+
T Consensus 306 ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 306 RIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred HHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 99999976654221111 11111224579999999999864 3699999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc
Q 016798 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (382)
Q Consensus 239 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld 318 (382)
|+|++|+|.+||+|++++ .+++|++|+||||||++|++||+|||++|++ +.++++++++++.+++++++.++|+|||
T Consensus 385 ~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~--~~~~e~i~~al~~a~l~~~i~~lp~Gld 461 (529)
T TIGR02868 385 LDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP--DATDEELWAALERVGLADWLRSLPDGLD 461 (529)
T ss_pred CCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCC--CCCHHHHHHHHHHcCCHHHHHhCccccc
Confidence 999999999999999999 9999999999999999999999999999975 4689999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 319 t~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||+|.+||||||||||||||++++|+|+|||||||+||+++|+.|++.+++..+++|+|.
T Consensus 462 T~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIi 524 (529)
T TIGR02868 462 TVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVV 524 (529)
T ss_pred chhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999989999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-77 Score=637.22 Aligned_cols=375 Identities=34% Similarity=0.485 Sum_probs=343.6
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
.-|+++|.|+++++++.|++++......+.+.....+..+..++......|++++++||+++++|.++.+.|.+..+...
T Consensus 802 iaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~ 881 (1228)
T KOG0055|consen 802 IAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPR 881 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri 162 (382)
+...+...+..+...+.+ +++....+++++|++++.+|.++...++-.+..+.+-...+.......+++.++..++.++
T Consensus 882 ~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~i 961 (1228)
T KOG0055|consen 882 KSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSI 961 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 888888777777666554 4456678899999999999999999988888777777777888888999999999999999
Q ss_pred HHhhcCcccccCCC-CCCCCCCCCCcEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 163 FDLTKFKSKVIEKP-DAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 163 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++++.+++.+... .+...+...|+|+++||+|+||.+. .++|+|+||+|++|+++||||||||||||++.+|.|+|+
T Consensus 962 F~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd 1041 (1228)
T KOG0055|consen 962 FEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD 1041 (1228)
T ss_pred HHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99999887544332 2323445678999999999999753 479999999999999999999999999999999999999
Q ss_pred CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccc
Q 016798 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (382)
Q Consensus 241 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~ 320 (382)
|++|.|.+||.|+++++++++|+++|.|+|||.||++||||||+||.. +++++|+.+|++.+++|+||.+||+||||.
T Consensus 1042 p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~--~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~ 1119 (1228)
T KOG0055|consen 1042 PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE--EVSEEEIIEAAKLANAHNFISSLPQGYDTR 1119 (1228)
T ss_pred CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC--CCCHHHHHHHHHHhhhHHHHhcCcCcccCc
Confidence 999999999999999999999999999999999999999999999943 379999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 321 vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
+||+|.+||||||||||||||++|||+||+|||+|||||.++|+.|+++|++.+.+||+|
T Consensus 1120 vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~I 1179 (1228)
T KOG0055|consen 1120 VGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTI 1179 (1228)
T ss_pred cCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEE
Confidence 999999999999999999999999999999999999999999999999999999999987
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-75 Score=608.23 Aligned_cols=373 Identities=24% Similarity=0.329 Sum_probs=316.7
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..++.
T Consensus 156 ~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 235 (588)
T PRK11174 156 IAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDF 235 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHH
Confidence 45789999999999999999998888899999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSL---------VSFITSLVFMIEPIQGVGKAYNEF 152 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l---------~~~~~~~~~~~~~~~~l~~~~~~~ 152 (382)
.+...+..+.......+.... .+..+++++++++.+ .|.+|+|.+ ++++++...+..|+..++..+..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~ 314 (588)
T PRK11174 236 RQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAK 314 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 666655544433333333222 222223333444443 367777654 233355667789999999999999
Q ss_pred HHHHHHHHHHHHhhcCcccccCCCCCCCCC-CCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHH
Q 016798 153 KQGEPAIERLFDLTKFKSKVIEKPDAVSLD-HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTL 231 (382)
Q Consensus 153 ~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl 231 (382)
+++..+.+|+.++++.+++...... ...+ ...++|+++||+|.|+++ +++|+|+||+|++||++|||||||||||||
T Consensus 315 ~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL 392 (588)
T PRK11174 315 AQAVGAAESLVTFLETPLAHPQQGE-KELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSL 392 (588)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCc-cccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 9999999999999976543211111 1111 123479999999877654 569999999999999999999999999999
Q ss_pred HHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHH
Q 016798 232 AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311 (382)
Q Consensus 232 ~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 311 (382)
+++|+|+| |++|+|.+||+|+++++.+++|++|+||||||++|++||+|||+++++ ++++++++++++.++++++++
T Consensus 393 ~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~--~~~~eei~~al~~a~l~~~i~ 469 (588)
T PRK11174 393 LNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLP 469 (588)
T ss_pred HHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC--CCCHHHHHHHHHHhCHHHHHH
Confidence 99999999 999999999999999999999999999999999999999999999975 478999999999999999999
Q ss_pred hCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 312 ~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++|+||||.+||+|.+|||||||||+||||+++||+|||||||||+||.++|+.|.++|+++.+++|+|.
T Consensus 470 ~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIi 539 (588)
T PRK11174 470 LLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLM 539 (588)
T ss_pred hcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999989999874
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-75 Score=617.90 Aligned_cols=377 Identities=33% Similarity=0.472 Sum_probs=339.9
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.++|++...+.
T Consensus 278 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 357 (694)
T TIGR03375 278 LVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAAL 357 (694)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+.......+...+ .+..++++++|++++.+|.+|+|.++++.++..++..|+..+...+..++.+..+.+|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~r 437 (694)
T TIGR03375 358 ARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQS 437 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665555444444332 3456677888999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..........+...+.|+++||+|+|++.++++|+|+||+|++||++||||+||||||||+++|+|+|+|
T Consensus 438 i~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p 517 (694)
T TIGR03375 438 LDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP 517 (694)
T ss_pred HHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 99999876543221111111223467999999999986556799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+++++.+++|++|+||||||++|++||+|||+++++ +.++++++++++.++++++++.+|+||||.+
T Consensus 518 ~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i 595 (694)
T TIGR03375 518 TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP--YADDEEILRAAELAGVTEFVRRHPDGLDMQI 595 (694)
T ss_pred CCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC--CCCHHHHHHHHHHcChHHHHHhCccccccee
Confidence 99999999999999999999999999999999999999999999976 4689999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+|||||||||+||||++++|+++|||||||+||+++|+.|.+.|+++.+++|+|.
T Consensus 596 ~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~ii 655 (694)
T TIGR03375 596 GERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVL 655 (694)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-75 Score=615.55 Aligned_cols=372 Identities=28% Similarity=0.403 Sum_probs=334.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++++|+++++..++.++.++..++..+..++.++.+.|.++|+++||+++.|..+.++|.+...+.
T Consensus 268 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 347 (686)
T TIGR03797 268 GLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQ 347 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHH
Confidence 46789999999999999999988888899999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+...+...+...+ .+..++++++|++++.+|.+|+|.++++.++..++..|+..+...+..++.+..+++|
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 427 (686)
T TIGR03797 348 RKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWER 427 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665555544444333 3456778889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..... .......+.|+++||+|+|+++++++|+|+||+|++||++||||+||||||||+|+|+|+|+|
T Consensus 428 i~~~l~~~~e~~~~~--~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 428 AKPILEALPEVDEAK--TDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred HHHHhcCCcccccCc--CCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 999988665432111 111223467999999999976556799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||+|+++++.+++|++|+||||||++|+|||+|||+++++ .++++++++++.++++++++++|+||||++
T Consensus 506 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~---~~~e~i~~al~~a~l~~~i~~lp~G~dt~i 582 (686)
T TIGR03797 506 ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP---LTLDEAWEAARMAGLAEDIRAMPMGMHTVI 582 (686)
T ss_pred CCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999875 579999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+|||||||||+||||++++|+|||||||||+||+++|+++.+.|+++ ++|+|+
T Consensus 583 ge~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~Ii 640 (686)
T TIGR03797 583 SEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIV 640 (686)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEE
Confidence 9999999999999999999999999999999999999999999999999987 578764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-74 Score=599.65 Aligned_cols=374 Identities=42% Similarity=0.641 Sum_probs=335.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+.++.++|.++++.++..|++.++..++.++.++...+.++..+++++.+.|.++|++++|+|+.++.+.+++.+..++.
T Consensus 145 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~ 224 (567)
T COG1132 145 VLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEEL 224 (567)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999888999999999999999999999999999999999999989998887776
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+............. +..+...+++++|.+++..+.+++|.+++++.+...+..|+..+...+..++.+..+.+|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~r 304 (567)
T COG1132 225 RRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAER 304 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555554444433322 334556777888999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..+.... .....++|+++||+|+|+++ +++|+|+||+|++||++||||||||||||++++|+|+|+|
T Consensus 305 i~~~l~~~~~~~~~~~~--~~~~~~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 305 LFELLDEEPEVEDPPDP--LKDTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred HHHHHcCCccccCCCCC--CCCCCCeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 99999876543222211 22345679999999999853 4799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||+|+++++.+++|++|++|||||+||++||+|||++|+++ +++|+++++++.++++|++.++|+||||.+
T Consensus 382 ~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~v 459 (567)
T COG1132 382 TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIV 459 (567)
T ss_pred CCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCccccccee
Confidence 999999999999999999999999999999999999999999999874 789999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+||||||||||||||+++||||||||||||+||++||+.|+++++++.++||+|.
T Consensus 460 ge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred cCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999999999999999888888874
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-74 Score=614.01 Aligned_cols=376 Identities=27% Similarity=0.410 Sum_probs=334.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||++|.|+.+.++|.+...+.
T Consensus 288 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 367 (708)
T TIGR01193 288 LFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDY 367 (708)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+.......+..++ .+..++++++|++++.+|.+|+|.++++.++...+..|+..+...+..++.+..+.+|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 447 (708)
T TIGR01193 368 LNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNR 447 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666655444433333322 3446777889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..........+...+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|
T Consensus 448 i~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p 526 (708)
T TIGR01193 448 LNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA 526 (708)
T ss_pred HHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 999998765532221111122335689999999999753 5799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||+|+++++.+++|++|+||||||++|++||+|||.++.. ++.++++++++++.+++++++.++|+||||.+
T Consensus 527 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i 605 (708)
T TIGR01193 527 RSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605 (708)
T ss_pred CCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCC-CCCCHHHHHHHHHHhCCHHHHHhcccccCcEe
Confidence 99999999999999999999999999999999999999999999842 24689999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.|++. +++|+|.
T Consensus 606 ~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~Ii 664 (708)
T TIGR01193 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIF 664 (708)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEE
Confidence 9999999999999999999999999999999999999999999999999986 6788874
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-74 Score=613.61 Aligned_cols=375 Identities=30% Similarity=0.417 Sum_probs=335.2
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++++|+++++..++.++..+..++..+..++..+.+.|.++|+++||+++.|+.+.++|.+...+.
T Consensus 286 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~ 365 (710)
T TIGR03796 286 LLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKL 365 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+...+...+...+ .+..++++++|++++.+|.+|+|.++++.++...+..|+..+...+..++.+..+++|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~r 445 (710)
T TIGR03796 366 LNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNR 445 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666655554444443332 3456778889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCC----C-CCCC-CCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHH
Q 016798 162 LFDLTKFKSKVIEKP----D-AVSL-DHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235 (382)
Q Consensus 162 i~~~~~~~~~~~~~~----~-~~~~-~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll 235 (382)
+.++++.+++..... . .... +...+.|+++||+|+|++.++++|+|+||+|++||++|||||||||||||+++|
T Consensus 446 i~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL 525 (710)
T TIGR03796 446 LDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLV 525 (710)
T ss_pred HHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 999998765532211 0 0111 223468999999999987656799999999999999999999999999999999
Q ss_pred hhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCC
Q 016798 236 LRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQ 315 (382)
Q Consensus 236 ~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~ 315 (382)
+|+|+|++|+|.+||.|+++++.+++|++|+||||||++|++||+|||+++++ +.++++++++++.+++++++.++|+
T Consensus 526 ~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~--~~~~~~i~~al~~~~l~~~i~~lp~ 603 (710)
T TIGR03796 526 AGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP--TIPDADLVRACKDAAIHDVITSRPG 603 (710)
T ss_pred hcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC--CCCHHHHHHHHHHhCCHHHHHhCcC
Confidence 99999999999999999999999999999999999999999999999999865 4689999999999999999999999
Q ss_pred CcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 316 Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||||.+||+|.+|||||||||+||||++++|+|+|||||||+||.++|+++.+.|++ .++|+|.
T Consensus 604 gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~Ii 667 (710)
T TIGR03796 604 GYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCII 667 (710)
T ss_pred cccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999987 4788874
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-74 Score=596.96 Aligned_cols=376 Identities=34% Similarity=0.516 Sum_probs=335.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+++++++|.+++++++++|+++++..++.+++++..++.++..++..+.+.|.++|++++|++|.++.+.++|++..++.
T Consensus 158 ~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~ 237 (582)
T PRK11176 158 IMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRM 237 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 45788999999999999999888888999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+............ .+..++++++|++++..|.+|+|+++++..+...+..|+..+...+..++.+..+.+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 317 (582)
T PRK11176 238 RQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665554444444332 3445666778899999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..... ...++..+.|+++||+|+|+++++++|+|+||+|++||++||||+||||||||+++|+|+|+|
T Consensus 318 i~~~~~~~~~~~~~~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 318 LFAILDLEQEKDEGK--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred HHHHhcCCCcCCCCC--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 999987654422111 111223457999999999987656799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||+|+++++.+++|++|+||||||++|++||+|||+++++. ..++++++++++.++++++++++|+||||.+
T Consensus 396 ~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~-~~~~~~i~~al~~~~l~~~i~~lp~Gldt~i 474 (582)
T PRK11176 396 DEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE-QYSREQIEEAARMAYAMDFINKMDNGLDTVI 474 (582)
T ss_pred CCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC-CCCHHHHHHHHHHhCcHHHHHhcccccCcee
Confidence 999999999999999999999999999999999999999999998652 4689999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+.|+++.+++|+|.
T Consensus 475 g~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~ 534 (582)
T PRK11176 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534 (582)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988899874
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-73 Score=603.90 Aligned_cols=374 Identities=34% Similarity=0.483 Sum_probs=330.0
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++.
T Consensus 294 ~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~ 373 (711)
T TIGR00958 294 GFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEET 373 (711)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+............... .+..++++++|++++..|.+|+|.+++++.+...+..|+..+...+.+++++..+.+|
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~r 453 (711)
T TIGR00958 374 LQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEK 453 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555544433333332222 3345667778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+.++++.+++...... ....+..+.|+++||+|+||+. ++++|+|+||+|++||++|||||||||||||+++|+|+|+
T Consensus 454 i~~~l~~~~~~~~~~~-~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 454 VFEYLDRKPNIPLTGT-LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred HHHHhCCCCCCCCCCC-CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 9999987654322111 1112234679999999999864 3579999999999999999999999999999999999999
Q ss_pred CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccc
Q 016798 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (382)
Q Consensus 241 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~ 320 (382)
|++|+|.+||+|+++++.+++|++|+||+|||++|++||+|||.++.+ +.++++++++++.++++++++++|+||||.
T Consensus 533 p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~--~~~~e~i~~al~~a~l~~~i~~lp~GldT~ 610 (711)
T TIGR00958 533 PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT--DTPDEEIMAAAKAANAHDFIMEFPNGYDTE 610 (711)
T ss_pred CCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCCCccCCc
Confidence 999999999999999999999999999999999999999999999875 467999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 321 vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||+|.+||||||||||||||++++|+|+|||||||+||+++|+.+.+ ....+++|+|.
T Consensus 611 ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIi 669 (711)
T TIGR00958 611 VGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLL 669 (711)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEE
Confidence 999999999999999999999999999999999999999999999999 33457888874
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-73 Score=585.33 Aligned_cols=375 Identities=27% Similarity=0.395 Sum_probs=327.6
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.++++.++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++.
T Consensus 137 ~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 216 (529)
T TIGR02857 137 AAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEY 216 (529)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHH
Confidence 45778999999999988898888888888888888889999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+..........++ .+..+++++++++.+..|.+|+|.++++.++...+..|+..+...+..++.+..+.+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 296 (529)
T TIGR02857 217 RERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEA 296 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655555444333333322 2333444456666777999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..... ..+ ....+.|+++||+|+|+++++++|+|+||+|++||++|||||||||||||+++|+|+|+|
T Consensus 297 i~~ll~~~~~~~~~~-~~~-~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 374 (529)
T TIGR02857 297 LFAVLDAPRPLAGKA-PVT-AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP 374 (529)
T ss_pred HHHHhCCCcccCCCc-CCC-CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 999987543221111 111 112357999999999987655799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+++++.+++|++++||+|+|++|++||+||++++.+ +.++++++++++.++++++++++|+||||.+
T Consensus 375 ~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v 452 (529)
T TIGR02857 375 TEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP--DASDAEIRRALERAGLDEFVAALPQGLDTLI 452 (529)
T ss_pred CCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchh
Confidence 99999999999999999999999999999999999999999999875 4578999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+||||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|.
T Consensus 453 ~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~ 512 (529)
T TIGR02857 453 GEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLL 512 (529)
T ss_pred ccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988899874
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-73 Score=564.36 Aligned_cols=375 Identities=28% Similarity=0.401 Sum_probs=327.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+.++++||.-++|.++++|++.+.+..++++.++.+++++....++++.+.|.++|+.|+|.|+..+...++..+..+++
T Consensus 133 i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~f 212 (559)
T COG4988 133 IAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDF 212 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGAL-FILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (382)
.+..++.-++.-+...+..+ .++... +.+.+|..++..|.++......++.+..-++.|++.++..|+.-+.+..+.+
T Consensus 213 R~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d 292 (559)
T COG4988 213 RKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAAD 292 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 66666655554333333332 233322 2333444444338999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCCC-CCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 161 RLFDLTKFKSKVIEKPDA-VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 161 ri~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++..+++.+.+....... ......+.++..+|++|+|++++ ++++|+||++++|+.+||||+||||||||+++|+|++
T Consensus 293 ~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~ 371 (559)
T COG4988 293 KLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL 371 (559)
T ss_pred HHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence 999999876553222211 11112233566669999999875 7999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||+++++++.+.||++++||+|+|+||++|+||||+++++ +.+++++.++++.+++.++++. |+|+||
T Consensus 372 ~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~--~~s~e~i~~al~~a~l~~~v~~-p~GLdt 448 (559)
T COG4988 372 APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP--DASDEEIIAALDQAGLLEFVPK-PDGLDT 448 (559)
T ss_pred CCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCC--cCCHHHHHHHHHHhcHHHhhcC-CCcccc
Confidence 9999999999999999999999999999999999999999999999987 4689999999999999999999 999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+||+|.+|||||+||+++||||++++++++||||||+||.+||+.|++.|.++.+++|+|+
T Consensus 449 ~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~ 510 (559)
T COG4988 449 VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLV 510 (559)
T ss_pred hhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999985
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-72 Score=587.04 Aligned_cols=376 Identities=37% Similarity=0.558 Sum_probs=337.6
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.++++++++.|+++++..++.++.++...+..+..++..+.+.|.++|+++||.++.++.+.++|++..++.
T Consensus 147 ~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~ 226 (571)
T TIGR02203 147 IVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRN 226 (571)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+.......+..+ ..+..++++++|++++.+|.+|+|.++++..+..++..|+..+...+..++++..+.+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 306 (571)
T TIGR02203 227 RRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAES 306 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666665555544444333 23456677788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..... .+.....++|+++||+|+|++.++++|+|+||+|++||+++|+|+||||||||+++|+|+|+|
T Consensus 307 i~~~l~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~ 384 (571)
T TIGR02203 307 LFTLLDSPPEKDTGT--RAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP 384 (571)
T ss_pred HHHHHcCCCCCCCCC--CCCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 999987655432111 111223457999999999986556799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||+++++++.+++|++++||||+|++|++|++|||.++++ .+.++++++++++.+++++++.++|+|+||.+
T Consensus 385 ~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i 463 (571)
T TIGR02203 385 DSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT-EQADRAEIERALAAAYAQDFVDKLPLGLDTPI 463 (571)
T ss_pred CCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCC-CCCCHHHHHHHHHHcChHHHHHhCcCccccee
Confidence 99999999999999999999999999999999999999999999864 14689999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+|.+|||||||||+||||++++|+|+|||||||+||.++++.+.+.|++..+++|+|.
T Consensus 464 ~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIi 523 (571)
T TIGR02203 464 GENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLV 523 (571)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988999874
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-72 Score=595.57 Aligned_cols=376 Identities=36% Similarity=0.523 Sum_probs=338.6
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++++|+++++..++.++.++..++..+..++.++.+.|.++|+++||++|.|+.+.++|++...+.
T Consensus 271 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 350 (694)
T TIGR01846 271 AVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAY 350 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+...........+ .+..++++++|++++..|.+|+|.++++.++...+..|+..++..+..++.+..+++|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 430 (694)
T TIGR01846 351 VAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALER 430 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766665555444444332 3456777889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++.... .....+...+.|+++||+|+|+++++++|+|+||+|++||++||||+||||||||+++|+|+|+|
T Consensus 431 i~~~l~~~~e~~~~-~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p 509 (694)
T TIGR01846 431 LGDILNSPTEPRSA-GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP 509 (694)
T ss_pred HHHHHcCCCCccCC-CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 99999876543221 11112233568999999999986556799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+++++.+++|++|+||+|+|++|++|++|||.++++ +.++++++++++.++++++++++|+||||.+
T Consensus 510 ~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i 587 (694)
T TIGR01846 510 QHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEV 587 (694)
T ss_pred CCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEe
Confidence 99999999999999999999999999999999999999999999875 4689999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.|+++.+++|+|.
T Consensus 588 ~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~ 647 (694)
T TIGR01846 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVII 647 (694)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988899874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-72 Score=582.24 Aligned_cols=374 Identities=25% Similarity=0.331 Sum_probs=325.0
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALV-IAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHS 81 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 81 (382)
++|+++||.+++++++++|+++++ ..++.++.++..++.++..+++++.+.|.++|+++||+|+.|+.+.++|++..++
T Consensus 153 ~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~ 232 (574)
T PRK11160 153 IGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQ 232 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHH
Confidence 567899999999988888876654 4666778888888899999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 016798 82 DLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVF-MIEPIQGVGKAYNEFKQGEPAI 159 (382)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 159 (382)
..+...+..+.......+..+. .+..++++++|++++ +|.+++|.+++++.+... ...|+..+...+..++++..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~ 311 (574)
T PRK11160 233 WLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASA 311 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777666555444433322 334556677888874 788999999998877644 4568888999999999999999
Q ss_pred HHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 160 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|+.++++.+++....... ......+.|+++||+|+|+++++++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 312 ~ri~~ll~~~~~~~~~~~~-~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 312 RRINEITEQKPEVTFPTTS-TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred HHHHHHHhCCCCCCCCccc-CCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 9999999876543211111 111234679999999999865457999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||+++++++.+++|++|+||||||++|++||+|||+++++ +.++++++++++.+++++++++ |+||||
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~--~~~~~~i~~al~~~~l~~~i~~-p~GldT 467 (574)
T PRK11160 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP--NASDEALIEVLQQVGLEKLLED-DKGLNA 467 (574)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC--ccCHHHHHHHHHHcCCHHHHcC-ccccCc
Confidence 9999999999999999999999999999999999999999999999875 4689999999999999999999 999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+||+|.+||||||||++||||++++|+++|||||||+||+++|+.+.+.|+++.+++|+|.
T Consensus 468 ~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tvii 529 (574)
T PRK11160 468 WLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLM 529 (574)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999988999874
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-73 Score=604.65 Aligned_cols=376 Identities=35% Similarity=0.510 Sum_probs=338.9
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
.-|++.|.|+++++.+.|++.+....+.+.+.+.+.+.++..++..+.+.|.+.+++||.+|+.|+.+.++|.+..+...
T Consensus 165 i~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~ 244 (1228)
T KOG0055|consen 165 IGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENAL 244 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri 162 (382)
+...+...+..+...+.. +.+......+|+|..++..+..++|.+++.+..+..-...+.+....+..+..+..++.++
T Consensus 245 k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I 324 (1228)
T KOG0055|consen 245 KFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRI 324 (1228)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHH
Confidence 777777666665555443 3445567889999999999999999888777666655667778888889999999999999
Q ss_pred HHhhcCcccccCCC-CCCCCCCCCCcEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 163 FDLTKFKSKVIEKP-DAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 163 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++++..++..... .........++|+|+||+|+||.++ .++|+|+||+|++|+++||||||||||||++++|.|+|+
T Consensus 325 ~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd 404 (1228)
T KOG0055|consen 325 FETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD 404 (1228)
T ss_pred HHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99998766543322 2223344678999999999999874 479999999999999999999999999999999999999
Q ss_pred CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccc
Q 016798 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (382)
Q Consensus 241 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~ 320 (382)
|++|+|.+||.|+++++.+++|++||+|+|+|.||++||+|||.||++ +++++++.++++.++.++|+..||+||||.
T Consensus 405 P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~--dat~~~i~~a~k~ana~~fi~~lp~g~~T~ 482 (1228)
T KOG0055|consen 405 PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP--DATREEIEEAAKAANAHDFILKLPDGYDTL 482 (1228)
T ss_pred CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC--cccHHHHHHHHHHccHHHHHHhhHHhhccc
Confidence 999999999999999999999999999999999999999999999987 578999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 321 vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||+|.+|||||||||||||||++||+||+||||||+||+++|+.|+++|++.+++||+|.
T Consensus 483 vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTiv 543 (1228)
T KOG0055|consen 483 VGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIV 543 (1228)
T ss_pred ccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999874
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-71 Score=579.70 Aligned_cols=376 Identities=31% Similarity=0.468 Sum_probs=332.2
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+++++++|.+++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||.|+.++.+.++|.+..++.
T Consensus 149 ~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~ 228 (588)
T PRK13657 149 PLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNL 228 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHH
Confidence 34578999999999999999888888889999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+...+......+ ..+..++++++|++++.+|.+|+|.+++++.++..+..|+..+...+..+..+..+.+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~ 308 (588)
T PRK13657 229 LAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEE 308 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555544444333332 23446677788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..........+...+.|+++||+|+|+++ +++|+|+||++++||+++|||+||||||||+++|+|+|+|
T Consensus 309 i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 309 FFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred HHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 999887644322111111112233579999999999854 4699999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.++.+++.+++|++|+||||+|++|++|++|||+++++ +.++++++++++.+++++++.++|+|+||.+
T Consensus 388 ~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~--~~~d~~i~~al~~~~l~~~i~~lp~gldt~i 465 (588)
T PRK13657 388 QSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP--DATDEEMRAAAERAQAHDFIERKPDGYDTVV 465 (588)
T ss_pred CCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC--CCCHHHHHHHHHHhCHHHHHHhCcccccchh
Confidence 99999999999999999999999999999999999999999999875 4679999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+.|+++.+++|+|.
T Consensus 466 ~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIi 525 (588)
T PRK13657 466 GERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFI 525 (588)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988899874
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-72 Score=624.71 Aligned_cols=374 Identities=26% Similarity=0.374 Sum_probs=312.5
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHhccHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKIS-KQ-----------------SHLSIASLSAYLNEVLPAILFVKA 64 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~ 64 (382)
+++++++|.++++++++ ++++.+.+.++.+... .+ ..+..++.+..+.|.++|+++||+
T Consensus 961 ~~~~~~~~~l~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka 1037 (1466)
T PTZ00265 961 VMSFYFCPIVAAVLTGT---YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVII 1037 (1466)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHH
Confidence 45788999888776543 3334444444333211 11 123456788999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Q 016798 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQ 143 (382)
Q Consensus 65 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~ 143 (382)
|+.|+.+.++|.+..+...+...+.....++...+... ..+..++++++|++++..|.+++|.+++++.++.....++.
T Consensus 1038 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~ 1117 (1466)
T PTZ00265 1038 YGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAG 1117 (1466)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877766666555555544444433 34456788899999999999999999998877666666788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccccCC-CCCCC---CCCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEE
Q 016798 144 GVGKAYNEFKQGEPAIERLFDLTKFKSKVIEK-PDAVS---LDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETV 218 (382)
Q Consensus 144 ~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~-~~~~~---~~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~ 218 (382)
.+...+..++.+..+.+|++++++.+++.... ..... .+...+.|+|+||+|+||++ +.++|+|+||+|++|+++
T Consensus 1118 ~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~v 1197 (1466)
T PTZ00265 1118 KLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTT 1197 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEE
Confidence 89999999999999999999999865432111 11111 11234689999999999854 347999999999999999
Q ss_pred EEECCCCCcHHHHHHHHhhCCCC------------------------------------------------------CCc
Q 016798 219 ALIGPSGGGKSTLAKLLLRLYDP------------------------------------------------------LSG 244 (382)
Q Consensus 219 aivG~sGsGKSTl~~ll~g~~~~------------------------------------------------------~~G 244 (382)
|||||||||||||+++|+|+|+| ++|
T Consensus 1198 AIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 1277 (1466)
T PTZ00265 1198 AIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSG 1277 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCC
Confidence 99999999999999999999998 699
Q ss_pred eEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCC
Q 016798 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324 (382)
Q Consensus 245 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~ 324 (382)
+|.+||+|+++++.+++|++|+||+|||+||++||+|||++|++ +++++++++|++.+++++||.+||+||||.|||+
T Consensus 1278 ~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~--~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~ 1355 (1466)
T PTZ00265 1278 KILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE--DATREDVKRACKFAAIDEFIESLPNKYDTNVGPY 1355 (1466)
T ss_pred eEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCC
Confidence 99999999999999999999999999999999999999999976 4789999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
|.+|||||||||||||||+++|+|||||||||+||+++|+.|+++|+++. +++|+|.
T Consensus 1356 G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIi 1414 (1466)
T PTZ00265 1356 GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT 1414 (1466)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEE
Confidence 99999999999999999999999999999999999999999999999984 6899874
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-71 Score=578.40 Aligned_cols=371 Identities=27% Similarity=0.383 Sum_probs=319.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.+++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||.|+.++.+.++|.+..++.
T Consensus 158 ~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~ 237 (592)
T PRK10790 158 VAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSH 237 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45778999999998888888888877888888888888888899999999999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALI-PQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (382)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (382)
.+...+..+..... ..+..+. .+..+++++++++ +..|.+++|.+++++.+...+..|+..++..+..++++..+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ 316 (592)
T PRK10790 238 YMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGE 316 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555544433322 1112111 1222222223333 5789999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 161 RLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 161 ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
|+.++++.+++..... ..+...++|+++||+|+|+++ +++|+|+||+|++||++||||+||||||||+++|+|+|+
T Consensus 317 ri~~~l~~~~~~~~~~---~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 317 RVFELMDGPRQQYGND---DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred HHHHHhcCCCccCCCC---ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 9999987654321111 112234579999999999853 569999999999999999999999999999999999999
Q ss_pred CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccc
Q 016798 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (382)
Q Consensus 241 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~ 320 (382)
|++|+|.+||.|+++++.+++|++|+||||||++|++||+|||++++ +.++++++++++.++++++++++|+||||.
T Consensus 393 p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~---~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~ 469 (592)
T PRK10790 393 LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR---DISEEQVWQALETVQLAELARSLPDGLYTP 469 (592)
T ss_pred CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC---CCCHHHHHHHHHHcCcHHHHHhcccccccc
Confidence 99999999999999999999999999999999999999999999986 368999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 321 vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||+|.+|||||||||+||||++++|+|+|||||||+||+++++.|.+.|+++.+++|+|.
T Consensus 470 i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIi 530 (592)
T PRK10790 470 LGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVV 530 (592)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999988899874
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=568.39 Aligned_cols=374 Identities=26% Similarity=0.382 Sum_probs=330.3
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||.++.+.++|++..++.
T Consensus 134 ~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 213 (544)
T TIGR01842 134 LVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKY 213 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHH
Confidence 45789999999998888888888777778888888888999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+........... ..+..++++++|++++.+|.+|+|.++++.++...+..|+..+...+..++.+..+.+|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 293 (544)
T TIGR01842 214 LSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKR 293 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666555544443333332 23445667788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++.... ...+...+.|+++||+|+|+++++++|+|+||++++||+++||||||||||||+++|+|+|+|
T Consensus 294 i~~~l~~~~~~~~~---~~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 370 (544)
T TIGR01842 294 LNELLANYPSRDPA---MPLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP 370 (544)
T ss_pred HHHHHhCCccccCC---CCCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 99998765442211 111223457999999999986555799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.++.+++.+++|++++||||+|++|++|++||+.++++ +.++++++++++.++++++++++|+|+||.+
T Consensus 371 ~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~ 448 (544)
T TIGR01842 371 TSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVI 448 (544)
T ss_pred CCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCcccccccc
Confidence 99999999999999999999999999999999999999999997764 4679999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++. +++|+|+
T Consensus 449 ~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ 509 (544)
T TIGR01842 449 GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVV 509 (544)
T ss_pred CCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999986 5788874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-70 Score=568.39 Aligned_cols=372 Identities=32% Similarity=0.449 Sum_probs=331.6
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHH
Q 016798 6 LVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCE 85 (382)
Q Consensus 6 ~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 85 (382)
++++|.+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|+.++.+.++|.+..++..+.
T Consensus 133 ~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~ 212 (569)
T PRK10789 133 TQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKK 212 (569)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999988999999999999999999999999999999999999999999999999988777666
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 86 LLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFD 164 (382)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~ 164 (382)
..+..+........... ..+..++++++|++++.+|.+|+|.++++..+...+..|+..++..+..++.+..+.+|+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ 292 (569)
T PRK10789 213 NMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRA 292 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655554444333332 23445667788999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc
Q 016798 165 LTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244 (382)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G 244 (382)
+++.+++..... ...+...+.|+++|++|+|+++++++|+|+||+|++||+++|+||||||||||+++|+|+|+|++|
T Consensus 293 ll~~~~~~~~~~--~~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G 370 (569)
T PRK10789 293 MLAEAPVVKDGS--EPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEG 370 (569)
T ss_pred HHcCCCcccCCC--CCCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 987654322111 111223457999999999986555799999999999999999999999999999999999999999
Q ss_pred eEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCC
Q 016798 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324 (382)
Q Consensus 245 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~ 324 (382)
+|.+||.++.+++..++|++++||+|+|++|++|++|||+++++ +.++++++++++.+++++++.++|+|+||.+|++
T Consensus 371 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 448 (569)
T PRK10789 371 DIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP--DATQQEIEHVARLASVHDDILRLPQGYDTEVGER 448 (569)
T ss_pred EEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCC
Confidence 99999999999999999999999999999999999999999865 4689999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|.
T Consensus 449 g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~ 505 (569)
T PRK10789 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVII 505 (569)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999999999999988899874
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-70 Score=568.63 Aligned_cols=377 Identities=38% Similarity=0.571 Sum_probs=330.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+++++++|.+++++++.+|+++++..++.++.++..++..+..++..+.+.|.++|+++||.++.++.+..+|++..++.
T Consensus 151 ~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~ 230 (576)
T TIGR02204 151 IMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKA 230 (576)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHH
Confidence 35678999999999988898888888899999999999999999999999999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+.......+... ..+..++++++|++++.+|.+|+|.++++..+..++..|+..+...+..+..+..+.+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~r 310 (576)
T TIGR02204 231 YEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAER 310 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555554443333333322 23345566778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCC-CCCCCCcEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 162 LFDLTKFKSKVIEKPDAVS-LDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.++++.+++......... ..+..+.|+++||+|+|++++ +++|+|+||+|+|||+++|+|+||||||||+++|+|+|
T Consensus 311 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 311 LIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred HHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 9999876543211111111 111235799999999998643 57999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||.++++++..++|++++|+||+|++|++||+|||.++++ +.++++++++++.+++.++++++|+|+||
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~--~~~~~~~~~~l~~~~l~~~i~~l~~gl~t 468 (576)
T TIGR02204 391 DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEEVEAAARAAHAHEFISALPEGYDT 468 (576)
T ss_pred CCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC--CCCHHHHHHHHHHcCcHHHHHhCCCCCCc
Confidence 9999999999999999999999999999999999999999999999875 35789999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+||+|.+||||||||++||||++++|+++|||||||+||.++++.+.+.|+++.+++|+|.
T Consensus 469 ~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~Ii 530 (576)
T TIGR02204 469 YLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLI 530 (576)
T ss_pred eeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999988899874
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-72 Score=543.21 Aligned_cols=375 Identities=31% Similarity=0.453 Sum_probs=326.4
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
+...+||+.+++.++++.++..+...+...-.+..+++.....+......|++-+.+|||-||+|+++.++|++...++.
T Consensus 353 F~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yq 432 (790)
T KOG0056|consen 353 FFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQ 432 (790)
T ss_pred hhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHH
Confidence 34458999999999888887766555444444555666666666677788999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri 162 (382)
+...+....-.+++.... ++.++.++.-.+.+|++..+.+++|.++-|.+|+..+..|+..++..+..++++...++++
T Consensus 433 k~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnm 512 (790)
T KOG0056|consen 433 KQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENM 512 (790)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHH
Confidence 655554333333333322 2233333333456677788999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC
Q 016798 163 FDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~ 242 (382)
+|+++.++|..+.+...+.....|.|+|+||+|.|.++ +++|+||||+++||+++|+|||||+||||++++|.++|+.+
T Consensus 513 fdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~ 591 (790)
T KOG0056|consen 513 FDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN 591 (790)
T ss_pred HHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc
Confidence 99999888876666666666667899999999999875 57999999999999999999999999999999999999999
Q ss_pred CceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccC
Q 016798 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322 (382)
Q Consensus 243 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vg 322 (382)
+|.|.+||+|+++....++|++||+||||..||++||..||.|+++ ++++||+.+|++++++||-|.++|+||+|.||
T Consensus 592 sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~--~AsneevyaAAkAA~IHdrIl~fPegY~t~VG 669 (790)
T KOG0056|consen 592 SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP--SASNEEVYAAAKAAQIHDRILQFPEGYNTRVG 669 (790)
T ss_pred CceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCC--CCChHHHHHHHHHhhHHHHHhcCchhhhhhhh
Confidence 9999999999999999999999999999999999999999999997 56899999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 323 e~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+|-.||||||||+|+||+++++|.|++|||+||+||..||+.|+.+|.++..+||.|.
T Consensus 670 ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIV 728 (790)
T KOG0056|consen 670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIV 728 (790)
T ss_pred hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEE
Confidence 99999999999999999999999999999999999999999999999999999998873
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=564.82 Aligned_cols=376 Identities=29% Similarity=0.433 Sum_probs=331.4
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++|+++||.+++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+||.++.+.+++++..++.
T Consensus 149 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~ 228 (585)
T TIGR01192 149 PTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNL 228 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+...+...+... ..+..++++++|++++.+|.+++|.++++..+...+..|+..+...+..+..+..+.+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~r 308 (585)
T TIGR01192 229 LSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLED 308 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555554444443333322 23445677788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..........+...+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+|+|
T Consensus 309 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 387 (585)
T TIGR01192 309 FFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP 387 (585)
T ss_pred HHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC
Confidence 999987654322111111112234579999999999854 3689999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.++.+++.+++|++++||+|+|++|++|++||+.++.+ +.++++++++++.+++++++.++|+|+||.+
T Consensus 388 ~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~ 465 (585)
T TIGR01192 388 TVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLV 465 (585)
T ss_pred CCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchh
Confidence 99999999999999999999999999999999999999999999865 3578999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+||||||||++|||||+++|+++|||||||+||.++++.+.+.|+++.+++|+|.
T Consensus 466 ~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~ 525 (585)
T TIGR01192 466 GERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFI 525 (585)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988999874
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-70 Score=537.21 Aligned_cols=366 Identities=30% Similarity=0.462 Sum_probs=308.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Q 016798 10 PVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKK 89 (382)
Q Consensus 10 ~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 89 (382)
+..+++++..+..+..........-.+.+.++..+.+.....+.|.+.+.++||.||.|+++.++|.+...++.+...+.
T Consensus 175 a~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~ 254 (591)
T KOG0057|consen 175 AAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKY 254 (591)
T ss_pred hHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhH
Confidence 33344444333333333223333334556778888899999999999999999999999999999999988888777766
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016798 90 RKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKF 168 (382)
Q Consensus 90 ~~~~~~~~~~~~~~~-~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~ 168 (382)
....++......+++ .....++..|..-+.++.+|+|.++....+..++..|+..++..+..+.++...+..++.+.+.
T Consensus 255 ~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~ 334 (591)
T KOG0057|consen 255 SSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEV 334 (591)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Confidence 655555444433333 2344455556666778999999999999999999999999999999999999888877765443
Q ss_pred cccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEE
Q 016798 169 KSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (382)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~ 248 (382)
.....+. ..+...+.+.|+|+||+|.|+++ +++|+++||+|++||++||||+|||||||++++|+||++ ++|+|++
T Consensus 335 ~~~i~~~--~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~I 410 (591)
T KOG0057|consen 335 DEDIQEA--ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILI 410 (591)
T ss_pred hhhhhhc--cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEE
Confidence 2221111 12333456789999999999864 469999999999999999999999999999999999999 9999999
Q ss_pred cCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCC
Q 016798 249 DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (382)
Q Consensus 249 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~l 328 (382)
||+|+++++++++|+.|||||||..||++||.+||.||++ .+++|++.++|+.+++||.+.++|+||+|.+||+|..|
T Consensus 411 dG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~--sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~L 488 (591)
T KOG0057|consen 411 DGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP--SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLML 488 (591)
T ss_pred CCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCC--CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhccccc
Confidence 9999999999999999999999999999999999999997 57899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 329 SgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|||||||++||||+++||||+++|||||+||.+||+.+.+.+.+...+||+|+
T Consensus 489 SGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~ 541 (591)
T KOG0057|consen 489 SGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIM 541 (591)
T ss_pred ccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999985
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=596.59 Aligned_cols=373 Identities=22% Similarity=0.320 Sum_probs=312.6
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
++++.+|.+++++++++++++++.+++.+..++..+...+..+.+.+.+.|+++|+++||+|+.++.+.+++.+..+...
T Consensus 1099 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~ 1178 (1522)
T TIGR00957 1099 VILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQ 1178 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45667787776666666666666667777777777777888899999999999999999999999988888877766554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVS-GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri 162 (382)
+..........+......+ +..+++++++++.+. .+.++.|.+.+++.|...+..|+..+...+..++.+..+++|+
T Consensus 1179 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi 1256 (1522)
T TIGR00957 1179 KAYYPSIVANRWLAVRLEC--VGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERL 1256 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443332222232222222 122333444555554 5789999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCC-CCCCCCC--CCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 163 FDLTKFKSKVIEK-PDAVSLD--HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 163 ~~~~~~~~~~~~~-~~~~~~~--~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++.++|.... ....+.+ +..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||+++|+|+|
T Consensus 1257 ~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~ 1336 (1522)
T TIGR00957 1257 KEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN 1336 (1522)
T ss_pred HHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 9999776553211 1111111 245789999999999876567999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||+|+++++.+++|++|++|||||++|+|||||||.... +.++++++++++.+++++++.++|+||||
T Consensus 1337 ~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt 1413 (1522)
T TIGR00957 1337 ESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS---QYSDEEVWWALELAHLKTFVSALPDKLDH 1413 (1522)
T ss_pred cCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc---CCCHHHHHHHHHHcCcHHHHhhCccCCCc
Confidence 999999999999999999999999999999999999999999997432 46899999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+||+|.+||||||||+|||||++++|+|||||||||+||.+|++.|++.|++.++++|+|.
T Consensus 1414 ~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~ 1475 (1522)
T TIGR00957 1414 ECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLT 1475 (1522)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999874
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-68 Score=521.48 Aligned_cols=374 Identities=24% Similarity=0.325 Sum_probs=314.0
Q ss_pred eeehhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSM-ALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
.+-++||.+++.....+.+. +++...+.+..++..++..+..+.+.+.+.|.+.|..+++.||+++.+...+.+....+
T Consensus 152 ~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~ 231 (573)
T COG4987 152 GLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASW 231 (573)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHH
Confidence 45578898888765554444 44445556667777888888999999999999999999999999999999998877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLIYFGALF-ILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVG-KAYNEFKQGEPAIE 160 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~ 160 (382)
.+...+..++..+......++....++ .+++.+..+..|..+......++...+..++++..+. ..+.++.+...+..
T Consensus 232 ~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~ 311 (573)
T COG4987 232 LKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASAR 311 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHH
Confidence 666666666665555544443322222 2333333455677765555555555566677777777 78899999999999
Q ss_pred HHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 161 RLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 161 ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
|+.++.+.+++...+ +. +.+.....++++||||+|+++++++|+|+||++++||++||+|+|||||||++++++|.|+
T Consensus 312 Rl~~i~~q~~e~~~~-~~-~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~ 389 (573)
T COG4987 312 RLNDILDQKPEVTFP-DE-QTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD 389 (573)
T ss_pred HHhhhccCCcccCCC-cc-ccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC
Confidence 999999877765333 11 1122222799999999999988889999999999999999999999999999999999999
Q ss_pred CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccc
Q 016798 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (382)
Q Consensus 241 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~ 320 (382)
|++|+|.++|.++.+++.+.+|+.+++++|.+++|++|+|||+.++++ +++||+++++++.+++++++++.|+||+|+
T Consensus 390 ~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~--~AsDEel~~aL~qvgL~~l~~~~p~gl~t~ 467 (573)
T COG4987 390 PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP--DASDEELWAALQQVGLEKLLESAPDGLNTW 467 (573)
T ss_pred CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHcCHHHHHHhChhhhhch
Confidence 999999999999999999999999999999999999999999999987 479999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 321 vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||+|.+||||||||+||||+|++|.|++||||||.+||+.||+++++.|.+..++||+|+
T Consensus 468 lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~ 528 (573)
T COG4987 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLM 528 (573)
T ss_pred hccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999985
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-67 Score=510.14 Aligned_cols=373 Identities=28% Similarity=0.373 Sum_probs=332.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
.++|.++|+++++.++...+++.+..+-.+..++..++..+...+.+....-..++.++|++.|......++|.+....+
T Consensus 152 ~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~ 231 (580)
T COG4618 152 AVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAY 231 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 35788999999999988877777766667777777888888999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+.+.+..-....+..+.-.. .+....++.+|+|+++.|++|.|.+++-..+..+.+.|+......|.++..+..+++|
T Consensus 232 L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~R 311 (580)
T COG4618 232 LSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKR 311 (580)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 776665554444444444322 4557788899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.+++...++... ..+.|.+.+.+.++++++.-|+.++++++|+||++++||.+|||||||||||||.|+|.|.++|
T Consensus 312 l~~lL~~~p~~~~---~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p 388 (580)
T COG4618 312 LNELLAELPAAAE---RMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP 388 (580)
T ss_pred HHHHHHhCccccC---CCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc
Confidence 9999886554322 2455667889999999998888778999999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
.+|.|.+||-++++++.+.+-++|||.|||..||+|||.|||+-..+ +.|++.+.++.+.++.||.|.++|+||||.|
T Consensus 389 ~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~i 466 (580)
T COG4618 389 TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRI 466 (580)
T ss_pred CCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCcc
Confidence 99999999999999999999999999999999999999999974443 4688999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCcee
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI 380 (382)
|++|..|||||||||+|||||+.||.+++||||.|+||.+.|..+.++|.+.++ +.|+|
T Consensus 467 G~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vv 526 (580)
T COG4618 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVV 526 (580)
T ss_pred CCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999999999999999999999999999874 56665
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-68 Score=506.63 Aligned_cols=374 Identities=31% Similarity=0.451 Sum_probs=329.6
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
+...++|+.++++++++.++.++.....-.-....+++.++.+..++...|.+-+.+++|.||.|+++..+|.+..+.+.
T Consensus 77 ~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~ 156 (497)
T COG5265 77 LWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYE 156 (497)
T ss_pred HHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHH
Confidence 34558999999999888887766655444444556677888899999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri 162 (382)
+...+......+++.....++ .........+...+..|++|+|.++....++.++..|+..++..+.++.++...++++
T Consensus 157 ~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~m 236 (497)
T COG5265 157 KAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKM 236 (497)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHH
Confidence 776666544444443333332 3344555667788889999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCCCC-CCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 163 FDLTKFKSKVIEKPDAVSLD-HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+++++.+.+..+.++..+.. ...+.+.|++|+|.|.++ .++|+++||++++|+++|+|||||+||||++++|.|||++
T Consensus 237 fdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~ 315 (497)
T COG5265 237 FDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV 315 (497)
T ss_pred HHhhccchhhccCCCCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 99998777665555444443 346789999999999875 5799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|.|.+||+|+++...+++|+.||.||||..||++|+..|+.+|++ +.+++++..+++.+++++++..+|+||||.|
T Consensus 316 ~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~--~at~eev~aaa~~aqi~~fi~~lP~gy~t~V 393 (497)
T COG5265 316 NSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP--DATAEEVGAAAEAAQIHDFIQSLPEGYDTGV 393 (497)
T ss_pred cCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc--cccHHHHHHHHHHhhhhHHHHhCchhhhccc
Confidence 99999999999999999999999999999999999999999999997 5789999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
||+|-.||||||||+|+||+++++|+|++|||+||+||..||++|+.+|++..++||++
T Consensus 394 gerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttl 452 (497)
T COG5265 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTL 452 (497)
T ss_pred chheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999876
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-66 Score=581.39 Aligned_cols=375 Identities=19% Similarity=0.233 Sum_probs=300.9
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
++++.+|.+.++++.++.+++.+..++.+..++..+......+.+.+.+.|.++|+++||+|+.++.+.++|.+..+...
T Consensus 1092 ~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~ 1171 (1560)
T PTZ00243 1092 VTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVY 1171 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 44566665444333333333344455566666667777788889999999999999999999999999999988777666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQLI-YFG--ALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (382)
+..+.......+......++ .+. .++++.++..+...+.+++|.+..++++...+..|+..+...+..++.++.+++
T Consensus 1172 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~e 1251 (1560)
T PTZ00243 1172 SCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVE 1251 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544433333322222221 111 122222222333445678998888888888999999999999999999999999
Q ss_pred HHHHhhcCccccc-CC-------------------------CCCC----CCCCCCCcEEEEeEEEEeCCCCCCccceeeE
Q 016798 161 RLFDLTKFKSKVI-EK-------------------------PDAV----SLDHINGDVKFCNISFKYADNMPLVLDQLNL 210 (382)
Q Consensus 161 ri~~~~~~~~~~~-~~-------------------------~~~~----~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl 210 (382)
|+.++++..++.. .. +... +.....+.|+|+||+|+|+++.+++|+||||
T Consensus 1252 Ri~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf 1331 (1560)
T PTZ00243 1252 RLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSF 1331 (1560)
T ss_pred HHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceE
Confidence 9999986322110 00 0000 0111246899999999998765679999999
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT 290 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~ 290 (382)
+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||||+||+|||||||..++
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~--- 1408 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL--- 1408 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997653
Q ss_pred CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC-CCEEEEeCcCCCCCHHHHHHHHHH
Q 016798 291 KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN-SSVLILDEATSALDSRSELLVRQA 369 (382)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~-~~ililDEpts~LD~~~~~~i~~~ 369 (382)
++++++++++++.+++++++.++|+||||.+||+|.+|||||||||||||||+++ |+|||||||||+||.+|++.|++.
T Consensus 1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999996 899999999999999999999999
Q ss_pred HHHHhCCCceec
Q 016798 370 VDRLLGHHTVRE 381 (382)
Q Consensus 370 l~~~~~~~TvI~ 381 (382)
|++.++++|+|.
T Consensus 1489 L~~~~~~~TvI~ 1500 (1560)
T PTZ00243 1489 VMSAFSAYTVIT 1500 (1560)
T ss_pred HHHHCCCCEEEE
Confidence 999999999874
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=575.69 Aligned_cols=378 Identities=29% Similarity=0.414 Sum_probs=325.0
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+++|++||.|++++++++|+++++..++.+++++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|.+....+
T Consensus 190 i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~ 269 (1466)
T PTZ00265 190 IWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLY 269 (1466)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999888888888889999999999999999999999999999999887777
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGG--------SFDGCSLVSFITSLVFMIEPIQGVGKAYNEFK 153 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g--------~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~ 153 (382)
.+...+......+...+.. +.++..++++|+|++++..| .+++|.+++++.+....+.++..+...+..++
T Consensus 270 ~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~ 349 (1466)
T PTZ00265 270 SKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYM 349 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666655555433333 33455677889999999875 57888888877766655566667777889999
Q ss_pred HHHHHHHHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHH
Q 016798 154 QGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLA 232 (382)
Q Consensus 154 ~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~ 232 (382)
.+..+.+|+.++++.+++..........+ ..+.|+++||+|+|++.. .++|+|+||+|++||++|||||||||||||+
T Consensus 350 ~a~~a~~ri~~ii~~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl 428 (1466)
T PTZ00265 350 KSLEATNSLYEIINRKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTIL 428 (1466)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 99999999999998766532211111112 124799999999998642 4699999999999999999999999999999
Q ss_pred HHHhhCCCCCCceEEE-cCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCC----------------------
Q 016798 233 KLLLRLYDPLSGCILV-DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM---------------------- 289 (382)
Q Consensus 233 ~ll~g~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~---------------------- 289 (382)
++|+|+|+|++|+|.+ ||.++.+++..++|++|+||+|+|.+|++||+|||.++...
T Consensus 429 ~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1466)
T PTZ00265 429 KLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENK 508 (1466)
T ss_pred HHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccc
Confidence 9999999999999999 57999999999999999999999999999999999987420
Q ss_pred ---------------------------------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 290 ---------------------------------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 290 ---------------------------------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
.+.++++++++++.+++++++.++|+||||.+|++|.+|||||||||
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRi 588 (1466)
T PTZ00265 509 NKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRI 588 (1466)
T ss_pred cccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHH
Confidence 13467899999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+||||++++|+|||||||||+||+++++.|++.|+++. +++|+|+
T Consensus 589 aIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIi 635 (1466)
T PTZ00265 589 SIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITII 635 (1466)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 99999999999999999999999999999999999986 4788874
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=579.41 Aligned_cols=347 Identities=23% Similarity=0.337 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 016798 28 AYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQ--LIYF 105 (382)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 105 (382)
.++.+..++..+......+...+.+.|+++|+++||+|+.++.+.+++.+..+.. .+............. ...+
T Consensus 1071 ~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~----~~~~~~~~~~~~wl~~~l~~~ 1146 (1622)
T PLN03130 1071 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNN----IRFTLVNMSSNRWLAIRLETL 1146 (1622)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556667778899999999999999999999876666555444332 222222111111111 1112
Q ss_pred HHHHHHHHHHHHHhCCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCC-CCC
Q 016798 106 GALFILCGGSLLVSGGS-FD-----GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEK-PDA 178 (382)
Q Consensus 106 ~~~~~~~~g~~lv~~g~-~t-----~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~-~~~ 178 (382)
..+++++.+.+.+..+. .+ .+.+..++.+...+..++..+...+..++.+..+++|+.++++.++|.... ...
T Consensus 1147 ~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~ 1226 (1622)
T PLN03130 1147 GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENN 1226 (1622)
T ss_pred HHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCC
Confidence 22333334444444332 11 223333344455566677777777888899999999999998876654221 111
Q ss_pred CCC--CCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC
Q 016798 179 VSL--DHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI 256 (382)
Q Consensus 179 ~~~--~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~ 256 (382)
.+. .+..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 1227 ~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i 1306 (1622)
T PLN03130 1227 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF 1306 (1622)
T ss_pred CCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccC
Confidence 111 123578999999999976556799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 257 RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 257 ~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+.+++|++|++|||||++|+|||||||.+++ +.++++++++++.+++++++.++|+||||++||+|.+|||||||||
T Consensus 1307 ~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~---~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130 1307 GLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN---EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred CHHHHHhccEEECCCCccccccHHHHhCcCC---CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence 9999999999999999999999999998875 3589999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||||||+++|+|||||||||+||.+||+.|+++|++.++++|+|.
T Consensus 1384 aLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~ 1428 (1622)
T PLN03130 1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 1428 (1622)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 999999999999999999999999999999999999999999874
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-65 Score=576.47 Aligned_cols=345 Identities=22% Similarity=0.353 Sum_probs=276.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 32 ERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFIL 111 (382)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (382)
+..++..+......+...+.+.|.++|+++||+|+.++.+.+++.+..+...+..........+...... .+..++++
T Consensus 1072 ~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~--~~~~~~~~ 1149 (1495)
T PLN03232 1072 STSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLE--TLGGVMIW 1149 (1495)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4445566666778889999999999999999999998877666655444332222111111111111111 12223333
Q ss_pred HHHHHHHhC-CCC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCC-CCCCCC--C
Q 016798 112 CGGSLLVSG-GSF----D-GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEK-PDAVSL--D 182 (382)
Q Consensus 112 ~~g~~lv~~-g~~----t-~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~-~~~~~~--~ 182 (382)
+.+.+.+.. +.+ . .+.+..++.+...+..|+..+...+..++.+..+++|+.++++.++|.... ....+. .
T Consensus 1150 ~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~ 1229 (1495)
T PLN03232 1150 LTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGW 1229 (1495)
T ss_pred HHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCC
Confidence 334444432 332 1 222333556677788899999999999999999999999999876653221 111111 1
Q ss_pred CCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHh
Q 016798 183 HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 183 ~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r 262 (382)
+..+.|+|+||+|+|+++.+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|
T Consensus 1230 p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR 1309 (1495)
T PLN03232 1230 PSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLR 1309 (1495)
T ss_pred CCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHH
Confidence 23468999999999976556799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++|||||++|+|||||||.+++ +.++++++++++.++++++++++|+||||.+||+|.+||||||||+||||||
T Consensus 1310 ~~i~iVpQdp~LF~gTIr~NL~~~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL 1386 (1495)
T PLN03232 1310 RVLSIIPQSPVLFSGTVRFNIDPFS---EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL 1386 (1495)
T ss_pred hhcEEECCCCeeeCccHHHHcCCCC---CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998875 4689999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+++|+|||||||||+||.+|++.|++.|++..+++|+|.
T Consensus 1387 Lr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~ 1425 (1495)
T PLN03232 1387 LRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLV 1425 (1495)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999999999884
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-63 Score=559.14 Aligned_cols=369 Identities=18% Similarity=0.287 Sum_probs=294.7
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
++++++|.++++++.++++++++..++.+..++..+......+.+.+.+.|+++|+.+||+|+.++.+.+++.+..+...
T Consensus 1019 ~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271 1019 VVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 45667777665544444444444455666666677777788899999999999999999999999999999988776543
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQLIY---FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (382)
+..........+......++. ...+++++++ ...++.|.+..++++...+..++..+...+..+..+..+++
T Consensus 1099 ~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~-----~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~e 1173 (1490)
T TIGR01271 1099 ANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIG-----TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVS 1173 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222222221111111 1111112222 22345566666666777788899999999999999999999
Q ss_pred HHHHhhcCcccccCCCCC---------------CC--CCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECC
Q 016798 161 RLFDLTKFKSKVIEKPDA---------------VS--LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGP 223 (382)
Q Consensus 161 ri~~~~~~~~~~~~~~~~---------------~~--~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~ 223 (382)
|+.++++.+++....... .+ ..+..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+
T Consensus 1174 Ri~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGr 1253 (1490)
T TIGR01271 1174 RVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGR 1253 (1490)
T ss_pred HHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECC
Confidence 999998766553211000 00 0123468999999999987667899999999999999999999
Q ss_pred CCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHH
Q 016798 224 SGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303 (382)
Q Consensus 224 sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~ 303 (382)
||||||||+++|+|+++ ++|+|.+||+|+++++.+++|++++||||||++|+|||||||.... ..+|++++++++.
T Consensus 1254 SGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~---~~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1254 TGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE---QWSDEEIWKVAEE 1329 (1490)
T ss_pred CCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc---CCCHHHHHHHHHH
Confidence 99999999999999997 7999999999999999999999999999999999999999996543 4689999999999
Q ss_pred cChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 304 ~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+++++++.++|+||||+|||+|.+|||||||||||||||+++|+|||||||||+||.+|++.|++.|++.++++|+|.
T Consensus 1330 ~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~ 1407 (1490)
T TIGR01271 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVIL 1407 (1490)
T ss_pred CCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999974
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-63 Score=515.18 Aligned_cols=366 Identities=19% Similarity=0.203 Sum_probs=297.7
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchH--HHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEM--CESARFRRLAH 80 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~ 80 (382)
++|+++||.+++++++++|+.+++..++.++.++...+.++..+++++.+.|.++|++++|+++.++ ...+++++..+
T Consensus 145 ~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~ 224 (555)
T TIGR01194 145 AYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESAN 224 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHH
Confidence 5678999999999998888888888888888888888889999999999999999999999999854 44667776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 81 SDLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAI 159 (382)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (382)
+..+...+..........+.... .+...+.+++|++ .+.+|+|.+++++++...+..|+..++..+..++++..++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~ 301 (555)
T TIGR01194 225 NIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIAC 301 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444433332222211211111 1112222333333 2689999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccc--c-CCCCCC-----CCCCCCCcEEEEeEEEEeCCC---CCCccceeeEEeeCCCEEEEECCCCCcH
Q 016798 160 ERLFDLTKFKSKV--I-EKPDAV-----SLDHINGDVKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGK 228 (382)
Q Consensus 160 ~ri~~~~~~~~~~--~-~~~~~~-----~~~~~~~~i~~~~v~f~y~~~---~~~~l~~isl~i~~G~~~aivG~sGsGK 228 (382)
+|+.++++.+++. . +.+... +.....++|+++||+|+|++. .+++|+|+||++++||++||||||||||
T Consensus 302 ~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGK 381 (555)
T TIGR01194 302 QRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGK 381 (555)
T ss_pred HHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCH
Confidence 9999997532111 1 001000 111224579999999999853 2369999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHH
Q 016798 229 STLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308 (382)
Q Consensus 229 STl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (382)
|||+++|+|+|+|++|+|.+||.++.+++.+++|++++||+|||++|++|+++|. .+ +.++++++++++.+++++
T Consensus 382 STl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~--~~~~~~~~~~~~~~~l~~ 456 (555)
T TIGR01194 382 STLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GE--HASLDNAQQYLQRLEIAD 456 (555)
T ss_pred HHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---cc--chhHHHHHHHHHHcCCch
Confidence 9999999999999999999999999999999999999999999999999999995 22 357889999999999999
Q ss_pred HHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHH-HH-hCCCceec
Q 016798 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD-RL-LGHHTVRE 381 (382)
Q Consensus 309 ~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~-~~-~~~~TvI~ 381 (382)
+++.+|+||||. .+||||||||++||||++++|+|+|||||||+||+++++.+.+.+. .+ .+++|+|.
T Consensus 457 ~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiii 526 (555)
T TIGR01194 457 KVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526 (555)
T ss_pred hhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999995 8999999999999999999999999999999999999999998764 34 35788874
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-62 Score=529.62 Aligned_cols=372 Identities=24% Similarity=0.379 Sum_probs=312.2
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 4 ~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
++.+..|.+.++++.+..+++.+.+++.+-.++..+-...+++...+.+.|++.|+.|||+|+.++++.+++.+..+.+.
T Consensus 952 vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~ 1031 (1381)
T KOG0054|consen 952 VISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENS 1031 (1381)
T ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhH
Confidence 34556777777666666777777777777778888888889999999999999999999999999999999988776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSG--GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~--g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
+..+-.....-++..-..+ ++.++++..+...+.. +..+.|.+-..++|...+...+..+.....++...+.+++|
T Consensus 1032 ~~~f~~~~a~RWla~Rle~--ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVER 1109 (1381)
T KOG0054|consen 1032 RAFFLSISANRWLAVRLEL--LGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVER 1109 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhH
Confidence 4433322211122221222 2222333333333332 22667888888888888988999999999999999999999
Q ss_pred HHHhhcCcccccCC-CC--CCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 162 LFDLTKFKSKVIEK-PD--AVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 162 i~~~~~~~~~~~~~-~~--~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+.++.+.++|.+.. +. ..+..+..|+|+|+|++.+|.++.+++|+||||+|+|||++||||++|||||||+++|.|+
T Consensus 1110 v~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054|consen 1110 VLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred HHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh
Confidence 99999877662111 11 1222345789999999999998878999999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc
Q 016798 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (382)
Q Consensus 239 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld 318 (382)
.+|.+|+|.|||+|+.+++++++|++++++||||.||+||+|.|| +|..+.+|+++|+|+++|++.+++.++|.|||
T Consensus 1190 ~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NL---DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld 1266 (1381)
T KOG0054|consen 1190 VEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL---DPFDEYSDDEIWEALERCQLKDVVSSLPGGLD 1266 (1381)
T ss_pred cCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcccccc---CcccccCHHHHHHHHHHhChHHHHhhCCcCCC
Confidence 999999999999999999999999999999999999999999999 56667899999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 319 t~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
+.|.|+|.|+|-||||.+||||||+|+++||+|||+|+++|.+|...|++.|++.+++||||
T Consensus 1267 ~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVl 1328 (1381)
T KOG0054|consen 1267 SEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVL 1328 (1381)
T ss_pred ceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999997
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-61 Score=543.40 Aligned_cols=338 Identities=22% Similarity=0.304 Sum_probs=284.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 26 VIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYF 105 (382)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (382)
+..++.+++.+..++.++..++..+.+.|.++|+++||++++|+.+.+++++..++..+...+......+...+... ..
T Consensus 456 l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~-~~ 534 (1495)
T PLN03232 456 LQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNS-IP 534 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 44567788888899999999999999999999999999999999999999887766544443333332222111111 11
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCCCCCC
Q 016798 106 GALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHIN 185 (382)
Q Consensus 106 ~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~ 185 (382)
..+.++++|++++.+|.+|+|.+++++.++..+..|+..++..+..+.++..+++|+.++++.+++..... .......
T Consensus 535 ~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~~~ 612 (1495)
T PLN03232 535 VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PPLQPGA 612 (1495)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CCcCCCC
Confidence 12334567888999999999999999999999999999999999999999999999999987654321111 1111123
Q ss_pred CcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 186 GDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
+.|+++|++|+|++. ++++|+|+||+|++||+++||||||||||||+++|+|+++|++|.+. .+|++
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~ 680 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGS 680 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCc
Confidence 479999999999853 35799999999999999999999999999999999999999998773 35789
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|+||+|+|+||++||||||.+|++ .++++++++++.|+++++++.+|+|++|.|||+|.+||||||||||||||+++
T Consensus 681 Iayv~Q~p~Lf~gTIreNI~fg~~---~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~ 757 (1495)
T PLN03232 681 VAYVPQVSWIFNATVRENILFGSD---FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS 757 (1495)
T ss_pred EEEEcCccccccccHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc
Confidence 999999999999999999999974 57899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHH-HHHHhCCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQA-VDRLLGHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~TvI~ 381 (382)
+|+|+|||||||+||+++++++.+. ++...+++|+|.
T Consensus 758 ~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~Il 795 (1495)
T PLN03232 758 NSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVL 795 (1495)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEE
Confidence 9999999999999999999988654 666778899874
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-60 Score=538.31 Aligned_cols=341 Identities=24% Similarity=0.325 Sum_probs=284.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 22 SMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQ 101 (382)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (382)
+++++..++.+++++..++..+...+..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+......+...+..
T Consensus 452 l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~ 531 (1622)
T PLN03130 452 LMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILN 531 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566778888888899999999999999999999999999999999999988766544333222222222111111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCC
Q 016798 102 LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL 181 (382)
Q Consensus 102 ~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~ 181 (382)
.. ...+.++++|++++.+|.+|+|.+++++.++..+..|+..++..+..+.++..+++|+.++++.++..... .. +.
T Consensus 532 ~~-~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~-~~-~~ 608 (1622)
T PLN03130 532 SI-PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP-NP-PL 608 (1622)
T ss_pred HH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-CC-cc
Confidence 11 11344556788888899999999999999999999999999999999999999999999998754322111 11 11
Q ss_pred CCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCC-ceEEEcCEeCCCCCHH
Q 016798 182 DHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-GCILVDDHDVQNIRLD 259 (382)
Q Consensus 182 ~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~-G~i~~~g~~~~~~~~~ 259 (382)
....+.|+++|++|+|++. ++++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+|.+
T Consensus 609 ~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l----------- 677 (1622)
T PLN03130 609 EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI----------- 677 (1622)
T ss_pred cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-----------
Confidence 1123479999999999853 3579999999999999999999999999999999999999999 89973
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
|++|+||+|+|+||++||||||.+|++ .++++++++++.|+++++++.||+|++|.|||+|.+|||||||||+||
T Consensus 678 --~~~Iayv~Q~p~LfngTIreNI~fg~~---~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLA 752 (1622)
T PLN03130 678 --RGTVAYVPQVSWIFNATVRDNILFGSP---FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMA 752 (1622)
T ss_pred --cCeEEEEcCccccCCCCHHHHHhCCCc---ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHH
Confidence 668999999999999999999999975 578999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHhCCCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVR-QAVDRLLGHHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~-~~l~~~~~~~TvI~ 381 (382)
||++++|+|+|||||||+||+++++++. ++++...++||+|.
T Consensus 753 RAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIl 795 (1622)
T PLN03130 753 RAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVL 795 (1622)
T ss_pred HHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEE
Confidence 9999999999999999999999998875 56777778899874
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=479.73 Aligned_cols=360 Identities=23% Similarity=0.249 Sum_probs=275.0
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCch---HHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAE---MCESARFRRLA 79 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~ 79 (382)
++|+++||.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++++ ++.+ ..+.+++++..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 4678999999999999999998888889999999888999999999999999999999996 4443 34556676665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 80 HSDLCELLKKRKMKALIPQTVQLIYFG-ALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPA 158 (382)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (382)
++..+...+.................. ..+.++++... +..+.+.+.++..+...+..|+..+...+..++.+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a 295 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVA 295 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443333332222211111111111 11111222211 12234444444444555678999999999999999999
Q ss_pred HHHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 159 IERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 159 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.+|+.++++.+.+.... ...+.+ ..+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+
T Consensus 296 ~~ri~~l~~~~~~~~~~-~~~~~~-~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~ 372 (547)
T PRK10522 296 FNKLNKLALAPYKAEFP-RPQAFP-DWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL 372 (547)
T ss_pred HHHHHHHhccccccccc-cccccC-cCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99999987544322111 111111 13579999999999853 4699999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc
Q 016798 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (382)
Q Consensus 239 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld 318 (382)
|+|++|+|.+||+++.+++.+++|++++||+|||++|++|++|| +. +.++++++++++.+++++++.. |+|.
T Consensus 373 ~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~---~~~~~~~~~~~~~~~l~~~~~~-~~~~- 444 (547)
T PRK10522 373 YQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GK---PANPALVEKWLERLKMAHKLEL-EDGR- 444 (547)
T ss_pred CCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cC---chHHHHHHHHHHHcCCchhhhc-cccC-
Confidence 99999999999999999999999999999999999999999999 22 3567788888888777666542 4342
Q ss_pred cccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 319 t~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
.+|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+.. +++|+|.
T Consensus 445 ----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~ 505 (547)
T PRK10522 445 ----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFA 505 (547)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 1489999999999999999999999999999999999999999999997654 4788874
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=472.07 Aligned_cols=361 Identities=17% Similarity=0.193 Sum_probs=297.0
Q ss_pred eeh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 016798 5 MLV-ISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (382)
Q Consensus 5 l~~-~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (382)
|+. ++|.+++++++.+|+..++.+++.+++.+...+.++..+++.+.+.|.++|+++||+|+.++.+.+++++..++..
T Consensus 233 L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~ 312 (659)
T TIGR00954 233 LLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLV 312 (659)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 454 8999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-hC----CCCCHHHHHH-HHHH---HHHHHHHHHHHHHHHHH
Q 016798 84 CELLKKRKMKALIPQTVQLIY---FGALFILCGGSLLV-SG----GSFDGCSLVS-FITS---LVFMIEPIQGVGKAYNE 151 (382)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~lv-~~----g~~t~g~l~~-~~~~---~~~~~~~~~~l~~~~~~ 151 (382)
+...+..+.......+..++. ...++++++|...+ .. |.+|.|.+++ |..+ +..+..|+..+...+.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~ 392 (659)
T TIGR00954 313 EHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRD 392 (659)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666555544443332 12233333444233 22 6899888766 5544 55668999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcccccC----C---CC---C-------------CCCCCCCCcEEEEeEEEEeCCCCCCcccee
Q 016798 152 FKQGEPAIERLFDLTKFKSKVIE----K---PD---A-------------VSLDHINGDVKFCNISFKYADNMPLVLDQL 208 (382)
Q Consensus 152 ~~~~~~~~~ri~~~~~~~~~~~~----~---~~---~-------------~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i 208 (382)
++++..+.+|+.++++.+++... . .. . .......+.|+++||+|+|+++ +++|+|+
T Consensus 393 i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~i 471 (659)
T TIGR00954 393 MTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESL 471 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-Ceeeecc
Confidence 99999999999999875332110 0 00 0 0011123569999999999754 3699999
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCC
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL 288 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~ 288 (382)
||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++||+.++..
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~ 540 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDS 540 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCC
Confidence 999999999999999999999999999999999999998763 668999999999999999999998642
Q ss_pred -----CCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHH
Q 016798 289 -----MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363 (382)
Q Consensus 289 -----~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~ 363 (382)
..+.++++++++++.++++++++. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||++++
T Consensus 541 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~ 618 (659)
T TIGR00954 541 SEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVE 618 (659)
T ss_pred hhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 123467889999999999999988 999999986 5679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCceec
Q 016798 364 LLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 364 ~~i~~~l~~~~~~~TvI~ 381 (382)
+.+.+.+++. ++|+|.
T Consensus 619 ~~l~~~l~~~--~~tvI~ 634 (659)
T TIGR00954 619 GYMYRLCREF--GITLFS 634 (659)
T ss_pred HHHHHHHHHc--CCEEEE
Confidence 9999999874 778763
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-55 Score=498.12 Aligned_cols=351 Identities=20% Similarity=0.258 Sum_probs=285.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 14 LISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMK 93 (382)
Q Consensus 14 li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (382)
++.++++++++++..++.+++++..++..+...+..+.+.|.++|+++||++++|+.+.+++++..++..+...+.....
T Consensus 461 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~ 540 (1522)
T TIGR00957 461 LAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLH 540 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666777778889999999999999999999999999999999999999999999887765544332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 016798 94 ALIPQTVQLIYFGALFILCGGSLLVS--GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSK 171 (382)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~lv~--~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 171 (382)
.+.. .........+.++.++.+.+. ++.++.+..++.+.++..+..|+..+...+..+.++..+.+|+.++++.+++
T Consensus 541 ~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~ 619 (1522)
T TIGR00957 541 AVGT-FTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEEL 619 (1522)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 2211 111111112222334556655 3568899999988888889999999999999999999999999999876543
Q ss_pred ccCCCCCCCCC-CCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 172 VIEKPDAVSLD-HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 172 ~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
........... ...+.|+++|++|+|+++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 620 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 699 (1522)
T TIGR00957 620 EPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG 699 (1522)
T ss_pred ccccccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC
Confidence 21110001111 11237999999999986545799999999999999999999999999999999999999999999987
Q ss_pred EeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCCh
Q 016798 251 HDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (382)
Q Consensus 251 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSg 330 (382)
+|+||+|+|++|++||+|||.+|.+ .++++.+++++.+++.+++..+|+|++|.+|++|.+|||
T Consensus 700 -------------~i~yv~Q~~~l~~~Ti~eNI~~g~~---~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSG 763 (1522)
T TIGR00957 700 -------------SVAYVPQQAWIQNDSLRENILFGKA---LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSG 763 (1522)
T ss_pred -------------EEEEEcCCccccCCcHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCH
Confidence 5999999999999999999999864 467888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHH---HhCCCceec
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR---LLGHHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~---~~~~~TvI~ 381 (382)
|||||++||||++++|+|+|||||||+||+++++.+.+.+.+ +.+++|+|.
T Consensus 764 GQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIl 817 (1522)
T TIGR00957 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRIL 817 (1522)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEE
Confidence 999999999999999999999999999999999999999864 456788874
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-55 Score=474.27 Aligned_cols=350 Identities=24% Similarity=0.314 Sum_probs=288.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 14 LISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMK 93 (382)
Q Consensus 14 li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (382)
++.++++.+++.+..++.+++.+.+.+.++...+.....+|.++||++||+|++|+.+.++..+..++..+...+.....
T Consensus 345 ~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~ 424 (1381)
T KOG0054|consen 345 LAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLS 424 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777888999999999999999999999999999999999999999999999887765443333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 016798 94 ALIPQTVQLIYFGALFILCGGSLL-VSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKV 172 (382)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~l-v~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 172 (382)
++........-. .+.+..++.+. ...+.++....++.++++..+-.|+..++..+..+.++.++.+|+.+++..++..
T Consensus 425 ~~~~~~~~~~p~-lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~ 503 (1381)
T KOG0054|consen 425 ALNSFLNFFSPV-LVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELD 503 (1381)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 332222221111 11222233433 4566788888889999999999999999999999999999999999998754332
Q ss_pred cCCCCCCCCCCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE
Q 016798 173 IEKPDAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251 (382)
Q Consensus 173 ~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~ 251 (382)
.......+.......++++|.+|++++. .++.|+||||+|++|+.+||||+.|||||+|+..|+|..+..+|+|.++|.
T Consensus 504 ~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs 583 (1381)
T KOG0054|consen 504 PDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS 583 (1381)
T ss_pred ccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe
Confidence 2211111222334579999999999863 345999999999999999999999999999999999999999999999884
Q ss_pred eCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 252 ~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
++||||+||||+|||||||.||.+ +++++.++++++|+|+..++.||.|..|.|||+|.+||||
T Consensus 584 -------------iaYv~Q~pWI~ngTvreNILFG~~---~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGG 647 (1381)
T KOG0054|consen 584 -------------VAYVPQQPWIQNGTVRENILFGSP---YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGG 647 (1381)
T ss_pred -------------EEEeccccHhhCCcHHHhhhcCcc---ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHh
Confidence 999999999999999999999986 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHhCCCcee
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVR-QAVDRLLGHHTVR 380 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~-~~l~~~~~~~TvI 380 (382)
|||||+||||+++|+||++||+|.||+|+++.+.|. ++++...++||+|
T Consensus 648 QKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~I 697 (1381)
T KOG0054|consen 648 QKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVI 697 (1381)
T ss_pred HHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEE
Confidence 999999999999999999999999999999776655 5677778899987
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-53 Score=476.60 Aligned_cols=353 Identities=19% Similarity=0.250 Sum_probs=288.5
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHH
Q 016798 6 LVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCE 85 (382)
Q Consensus 6 ~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 85 (382)
+++....+++.++++++++++..++.+++.+..++.++...+..+.+.|.++|+++||++++|+.+.+++++..+...+.
T Consensus 217 ~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~ 296 (1490)
T TIGR01271 217 WELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKL 296 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33445566777777888888888899999999999999999999999999999999999999999999988877655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 016798 86 LLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPI-QGVGKAYNEFKQGEPAIERLFD 164 (382)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ri~~ 164 (382)
..+......+... ........+.++.++.|.+..+ ++.+.+++++.++..+..|+ ..++..+..+.++.++++||.+
T Consensus 297 ~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~ 374 (1490)
T TIGR01271 297 TRKIAYLRYFYSS-AFFFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQD 374 (1490)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222111 1111122333444566666554 67888898888888887787 4799999999999999999999
Q ss_pred hhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCC--------------------------------CCCccceeeEEe
Q 016798 165 LTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADN--------------------------------MPLVLDQLNLHI 212 (382)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~--------------------------------~~~~l~~isl~i 212 (382)
++..++...... ......++++|++|.|+.. .+++|+|+||+|
T Consensus 375 fL~~~e~~~~~~-----~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i 449 (1490)
T TIGR01271 375 FLCKEEYKTLEY-----NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKL 449 (1490)
T ss_pred HhcCcccccccc-----cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEE
Confidence 997543221110 0112358899999998531 135899999999
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~ 292 (382)
++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||+|+|++|++||+|||.||.+ .
T Consensus 450 ~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~---~ 513 (1490)
T TIGR01271 450 EKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS---Y 513 (1490)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc---c
Confidence 99999999999999999999999999999999999987 4999999999999999999999864 3
Q ss_pred CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHH-HHH
Q 016798 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ-AVD 371 (382)
Q Consensus 293 ~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~-~l~ 371 (382)
++++..++++.+++.+++..+|+|++|.+|++|.+|||||||||+||||++++|+++|||||||+||+.+++.+.+ .++
T Consensus 514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~ 593 (1490)
T TIGR01271 514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC 593 (1490)
T ss_pred chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 5667788899999999999999999999999999999999999999999999999999999999999999999997 467
Q ss_pred HHhCCCceec
Q 016798 372 RLLGHHTVRE 381 (382)
Q Consensus 372 ~~~~~~TvI~ 381 (382)
++.+++|+|.
T Consensus 594 ~~~~~~tvil 603 (1490)
T TIGR01271 594 KLMSNKTRIL 603 (1490)
T ss_pred HHhcCCeEEE
Confidence 7778889874
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-51 Score=460.15 Aligned_cols=358 Identities=20% Similarity=0.225 Sum_probs=285.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 016798 7 VISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCEL 86 (382)
Q Consensus 7 ~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 86 (382)
.+-...+++.++++++++.+..++.+++.+..++..+...+..+.+.|.++|+++||++++|+.+.+++.+..++..+..
T Consensus 383 ~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l 462 (1560)
T PTZ00243 383 RLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYL 462 (1560)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666777777788899999999999999999999999999999999999999999999998776555443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016798 87 LKKRKMKALIPQTVQLIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLT 166 (382)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~ 166 (382)
.+......+...+...... .+.++.+++|.+.++.+|++.+++++.++..+..|+..+...+..+.++.++++||.+++
T Consensus 463 ~~~~~~~~~~~~~~~~~p~-l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL 541 (1560)
T PTZ00243 463 RDVQLARVATSFVNNATPT-LMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFL 541 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222222211111 122234567778889999999999999999999999999999999999999999999998
Q ss_pred cCccccc-------CC--------CC-C-------------CC-----------------------------CCCCCCcE
Q 016798 167 KFKSKVI-------EK--------PD-A-------------VS-----------------------------LDHINGDV 188 (382)
Q Consensus 167 ~~~~~~~-------~~--------~~-~-------------~~-----------------------------~~~~~~~i 188 (382)
+.++... +. .. . .+ .....+.+
T Consensus 542 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1560)
T PTZ00243 542 ECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSV 621 (1560)
T ss_pred cCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 6543100 00 00 0 00 00011356
Q ss_pred EEEeEEEEeCC--------------------------------------CCCCccceeeEEeeCCCEEEEECCCCCcHHH
Q 016798 189 KFCNISFKYAD--------------------------------------NMPLVLDQLNLHIRAGETVALIGPSGGGKST 230 (382)
Q Consensus 189 ~~~~v~f~y~~--------------------------------------~~~~~l~~isl~i~~G~~~aivG~sGsGKST 230 (382)
.++|++|.++. +++++|+|+||+|++||+++|+|||||||||
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKST 701 (1560)
T PTZ00243 622 VVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKST 701 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHH
Confidence 77787776431 1235899999999999999999999999999
Q ss_pred HHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHH
Q 016798 231 LAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV 310 (382)
Q Consensus 231 l~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i 310 (382)
|+++|+|+++|++|+|.++ ++|+|++|+|++|++|++|||.++.+ .+.+++.++++.+++++++
T Consensus 702 LL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~---~~~~~~~~~~~~~~l~~~l 765 (1560)
T PTZ00243 702 LLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDE---EDAARLADAVRVSQLEADL 765 (1560)
T ss_pred HHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCCh---hhHHHHHHHHHHhhhHHHH
Confidence 9999999999999999852 47999999999999999999999764 3566788899999999999
Q ss_pred HhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHH-HHHHhCCCceec
Q 016798 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA-VDRLLGHHTVRE 381 (382)
Q Consensus 311 ~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~TvI~ 381 (382)
+.+|+|++|.+|++|.+||||||||++||||++.+|+++|||||||+||+.+++.+.+. +....+++|+|.
T Consensus 766 ~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIl 837 (1560)
T PTZ00243 766 AQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVL 837 (1560)
T ss_pred HHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999988888764 444556788874
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=366.94 Aligned_cols=192 Identities=27% Similarity=0.463 Sum_probs=179.6
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
++|+++|++|+|+++.+++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.+||.++..++..++|+.+
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 4689999999997555579999999999999999999999999999999999997 789999999999999999999999
Q ss_pred EEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+|+||+|.+|++|++||+.... ..++++++++++.+++.+++..+|.+|+|.++++|.+||||||||++||||++++
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYG---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEECCCcccchhhHHHHhhhcc---CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999996432 2457889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+|+||||||++||+.+.+.+++.|++..+++|+|.
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~ 192 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVIL 192 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999888888874
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=340.32 Aligned_cols=187 Identities=35% Similarity=0.502 Sum_probs=168.4
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCC-----ceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-----GCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~-----G~i~~~g~~~~~--~~~ 258 (382)
..++++||++.|++ ..+|+|||++|++++++|++|||||||||+++++.++.+..+ |+|.++|+|+-+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 46899999999975 469999999999999999999999999999999999999876 999999999976 478
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.++|++||+|+|.|.-|+.||+||+.||...+... ++.++.+++.++|++.+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 89999999999999999999999999985443332 3567889999999988754 245678899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+||||||.-+|+||+||||||+|||.+..+|.+.|.+++++-|+|+
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIvi 203 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVI 203 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEE
Confidence 99999999999999999999999999999999999999998888875
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-48 Score=340.21 Aligned_cols=181 Identities=38% Similarity=0.516 Sum_probs=159.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC-CCHHHHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-IRLDSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~-~~~~~~r~~i 265 (382)
-|+++||+++|++. .+|+|||++|++||+++|+||||||||||+++|.||-+|++|+|.+||.++.. .+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48899999999854 69999999999999999999999999999999999999999999999987743 3788899999
Q ss_pred EEecCCCccccc-cHHHHHcCCCCC-CCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLM-TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~-~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
|+|+|+..||+- |+.||++++... ...+. +.-.+.++++++.+..+..| .+|||||+||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 999999999976 999999876321 11222 33456788899999888888 79999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCcee
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI 380 (382)
|||+-+|+++++|||||||||+...++++.++++.+ +.|+|
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMi 190 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMI 190 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEE
Confidence 999999999999999999999999999999999875 56765
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=340.61 Aligned_cols=193 Identities=37% Similarity=0.623 Sum_probs=178.8
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
++|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 36899999999985445699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+|++|++.+|+.|++||+.+... .+.+++.++++..++.+++..+|.|+++.+++.+.+||||||||++||||++++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGE---YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEECCCCccccchHHHHhCcCCC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999986542 356788889999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+++||||||++||+.+++.+.+.|+++.+++|+|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~ 193 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFKDCTVLT 193 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999877777764
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=342.31 Aligned_cols=192 Identities=45% Similarity=0.727 Sum_probs=175.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|+++..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 46899999997544569999999999999999999999999999999999999999999999999988777788889999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++|++.+|+.|++||+.++.. ..+.+++.+.++..++.++++.+|.|+++.+...+.+||||||||++||||++.+|+
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EcCCchhccchHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 999999999999999988653 234566777788889999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 192 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICAGRTVII 192 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999999999877788764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=356.99 Aligned_cols=191 Identities=32% Similarity=0.434 Sum_probs=164.5
Q ss_pred CCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--C
Q 016798 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--I 256 (382)
Q Consensus 184 ~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~ 256 (382)
..+.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 346799999999997544579999999999999999999999999999999999996 579999999999973 4
Q ss_pred CHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHH-----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 257 RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER-----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 257 ~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~-----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
+...+|+.++||||+|++|++|++||+.++......++++ +.++++.+++ ++++++.++++|.+||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCHH
Confidence 5567889999999999999999999999764222233333 3455666654 345678899999999999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|.
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~ 279 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIII 279 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999999988888774
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=334.68 Aligned_cols=194 Identities=45% Similarity=0.726 Sum_probs=176.2
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
++|+++|++++|++...++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 35899999999975334699999999999999999999999999999999999999999999999998877777778899
Q ss_pred EEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+|++|++.+|..|++||+.++... .+.+++.+.++..++.+.++.+|.|++|.+.+...+||||||||++||||++.+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCC--CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 999999999989999999876432 245677788999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 194 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLII 194 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999876677764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=342.29 Aligned_cols=182 Identities=34% Similarity=0.510 Sum_probs=159.6
Q ss_pred EEEEeEEEEeCCC---CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---H
Q 016798 188 VKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---L 261 (382)
Q Consensus 188 i~~~~v~f~y~~~---~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~ 261 (382)
|++++||+.|+.+ ...+|+||||+|++||++||+|+||||||||++++.++-.|++|+|.+||.++..++... .
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999863 246899999999999999999999999999999999999999999999999988877654 5
Q ss_pred hcceEEecCCCcccc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 262 RRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 262 r~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
|++||+++|++.|++ .|+.||++|....+..+. +++.+.++.+++.|+.+..| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 678999999999997 699999998654444444 45567888888888887776 89999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
+|||||+.+|+||+.|||||||||+|.+.|++.|++.-+ +-|++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIv 196 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIV 196 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999999999988753 44554
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=336.79 Aligned_cols=193 Identities=45% Similarity=0.748 Sum_probs=177.2
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
++|+++|++++|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 368999999999742 3599999999999999999999999999999999999999999999999999888878888899
Q ss_pred EEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+|++|++.+|++|++||+.+.... ...+++.++++..++.++++.+|.|+++.++....+||||||||++||||++.+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPN--ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCC--CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999886532 345677888889999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~ 193 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGRTSII 193 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999877788764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=319.36 Aligned_cols=182 Identities=37% Similarity=0.512 Sum_probs=163.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC---HHHHhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~r~~ 264 (382)
|+|+||+++|+.+ +++|+||||+|++||++-|+||||||||||+|+|++...|++|+|.++|.|+..+. ...+|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7899999999987 67999999999999999999999999999999999999999999999999998765 4478999
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
||+|+||..|... |++||++|...-...+ .+++.++++.+++.+-...+| .+|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHH
Confidence 9999999998865 9999998753322222 356778999999999999999 79999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||+..+|++||-||||.+||+++...|++.+.++- .+.||++
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ 192 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLM 192 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEE
Confidence 99999999999999999999999999999999875 4667765
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=330.56 Aligned_cols=183 Identities=36% Similarity=0.487 Sum_probs=154.1
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HH-
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SL- 261 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~- 261 (382)
++++||+..|..+. ..+|+++||+|++||++||+||||||||||+++|.|+..|++|.|.++|.|+..++.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56899999997543 3689999999999999999999999999999999999999999999999999988754 34
Q ss_pred hcceEEecCCCccccc-cHHHHHcC----CCCCCCCCHHHHHHHHHHcChHHHHH-hCCCCcccccCCCCCCCChHHHHH
Q 016798 262 RRHVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTARTANADEFVR-TLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eNi~~----~~~~~~~~~~~~~~~~~~~~l~~~i~-~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
|++||||+|+.+|++. |++||+.+ .........+.....++.+++.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 4579999999999866 99999984 22111112345566677777776555 444 7999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||||+.+|++++.||||++||.++.+.|++.++++.+ ++|+|+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~ 198 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIM 198 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999854 567774
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=335.71 Aligned_cols=192 Identities=57% Similarity=0.851 Sum_probs=175.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++.+.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999988777788889999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++|++.+|+.|++||+.++... .+.+++.+.++..++.++++.+|.|+++.++.....||||||||++||||++.+|+
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPG--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred eCCCCeeccccHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886532 34566777888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~ 192 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMKNRTTFV 192 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999999999887788764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=331.92 Aligned_cols=181 Identities=38% Similarity=0.589 Sum_probs=162.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+|+|||++|.+ ..+++|+||+|++||++.++|||||||||++|+|.|+++|++|+|++||.++++++..++|++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 789999999984 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChH--HHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANAD--EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~--~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
|-|...||+- ||.|||++-......+. +++.+.++.++++ +|..+.| .+|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999966 99999987544333444 4556778888885 4777777 799999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||+.+|+|+++|||++|||+.++.++++-+.++.+ ++|+|+
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivf 191 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVF 191 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEE
Confidence 99999999999999999999999999999988754 678774
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=338.92 Aligned_cols=195 Identities=30% Similarity=0.533 Sum_probs=178.7
Q ss_pred CCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc
Q 016798 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263 (382)
Q Consensus 184 ~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 263 (382)
..+.|+++|++++|++....+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 45689999999999764346999999999999999999999999999999999999999999999999998888888899
Q ss_pred ceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 264 HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
.++|++|+|.+|++|++||+..... ...+++..+++..++.++++.+|.|+++.+++.+.+||||||||++||||++
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999975421 2456677888889999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++|+++||||||++||+.++..+.+.++++.+++|+|+
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii 210 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVT 210 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999999998877788764
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=331.09 Aligned_cols=177 Identities=34% Similarity=0.456 Sum_probs=157.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.+++++|+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4889999999986 4699999999999999999999999999999999999999999999999998542 45799
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.||+= |++||+.++...... ..+.+.+.++.+++.++-+..| .+||||||||+|||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHH
Confidence 99999999986 999999987643221 2346788899999999988888 7999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+.+|++|+||||+++||+.|+..+++-+.++.+ ++|+++
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvll 186 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLL 186 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 9999999999999999999999999999998875 478764
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=333.85 Aligned_cols=191 Identities=43% Similarity=0.709 Sum_probs=175.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|+++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999743 359999999999999999999999999999999999999999999999999988888888889999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++|++.+|+.|++||+.++.. ..+++++...++.+++.+++..+|.|+++.+.....+||||||||++|||||+++|+
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred ECCCChhhcchHHHHHhhcCC--CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999988653 235666778888899999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 191 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIV 191 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999999999877777764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=336.13 Aligned_cols=182 Identities=35% Similarity=0.468 Sum_probs=162.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.++++|++|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|.+|+|.+||.++.+++.+++.+++|
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 4789999999984 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcc-ccccHHHHHcCCCCC--------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 267 LVSQDITL-FSGTVAENIGYRDLM--------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 267 ~v~Q~~~l-f~~ti~eNi~~~~~~--------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
||||++.. |.-||+|-+.+|+.. ...|.+.+.++++.+++.++..+ .-..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHHH
Confidence 99999764 566999999988531 11233467888999999988765 24689999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||+++|+||+||||||+||..++.++++.++++.+ ++|+|+
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~ 194 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVM 194 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999874 578774
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=330.54 Aligned_cols=196 Identities=43% Similarity=0.665 Sum_probs=174.8
Q ss_pred CCCcEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHh
Q 016798 184 INGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 184 ~~~~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r 262 (382)
..+.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 456799999999997532 3699999999999999999999999999999999999999999999999998877777778
Q ss_pred cceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+.++|++|++.+|+.|++||+.++... ...+++.+..+..++.++++.+|.|+++.+.....+||||||||++||||+
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQS--CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 899999999999999999999876432 234455555666788899999999999999999999999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 204 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLV 204 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999877777764
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=331.38 Aligned_cols=179 Identities=33% Similarity=0.464 Sum_probs=157.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++|+|.+. ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.+...... +..||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 58999999999854 59999999999999999999999999999999999999999999999988765432 46799
Q ss_pred EecCCCc---cccccHHHHHcCCCCCC--------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 267 LVSQDIT---LFSGTVAENIGYRDLMT--------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 267 ~v~Q~~~---lf~~ti~eNi~~~~~~~--------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
||||... -|+.||+|-+.+|+..+ ..+.+++.++++.+++.++.++ .-..|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHHH
Confidence 9999664 58999999999874321 1235889999999999988755 235899999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+.|||||+.+|++|+|||||+|+|+.++..+.+.|+++++ ++||++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~ 194 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLM 194 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999999999999986 788874
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=331.97 Aligned_cols=192 Identities=51% Similarity=0.778 Sum_probs=173.8
Q ss_pred EEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 188 VKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
|+++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999753 246999999999999999999999999999999999999999999999999988777777788899
Q ss_pred EecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 267 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
|++|++.+|+.|++||+.++... ...+++...++..++.+++..+|.|+++.+.....+||||||||++||||++.+|
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPD--ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCC--CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999886432 2455667778888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~ 193 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEALDRAMKGRTTIV 193 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999998876778764
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=328.79 Aligned_cols=183 Identities=36% Similarity=0.516 Sum_probs=155.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HHhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r~~ 264 (382)
|+++|++++|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 689999999975434699999999999999999999999999999999999999999999999998766543 36788
Q ss_pred eEEecCCCcccc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
++|++|++.+|. .|++||+.++...... .++++.++++..++.++....| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999886 5999999864211111 2345677788888776665544 58999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 193 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLV 193 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999998854 677763
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-44 Score=341.44 Aligned_cols=179 Identities=36% Similarity=0.579 Sum_probs=160.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++||+++|++.. +++|+||+|+.||+++|+||||||||||+++|+||.+|++|+|.+||.++.++++. .+.||
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KRGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HCCEE
Confidence 589999999998642 89999999999999999999999999999999999999999999999999999886 47899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
+|+|++.||+- ||+|||+|+......+ ++++.++++..++.+++++.| .+||||||||+|||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999976 9999999986543322 567788999999999999988 7999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
++++|++++||||+|+||++.+..+...|+++.+ +.|+|
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~I 188 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTI 188 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 9999999999999999999999999888888654 34655
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=324.92 Aligned_cols=183 Identities=35% Similarity=0.477 Sum_probs=151.6
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH----H
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS----L 261 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~----~ 261 (382)
|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997531 46999999999999999999999999999999999999999999999999998766432 3
Q ss_pred hcceEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+++++|++|++.+|.. |++||+.++......+ ++++.++++..++.+.. .....+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHHHHHHH
Confidence 5689999999999976 9999998753211111 23444555555554433 344579999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 196 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVV 196 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999865 678764
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=317.30 Aligned_cols=183 Identities=36% Similarity=0.485 Sum_probs=158.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC---HHHHhc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~r~ 263 (382)
.|+++||+..||++ +.+|+||||+|++||++||+||||||||||+++|.|+.+|++|+|.++|.++..++ ...+|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 58999999999854 57999999999999999999999999999999999999999999999999998877 556788
Q ss_pred ceEEecCCCccccc-cHHHHHcCCCCCC------------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCCh
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRDLMT------------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~~~~------------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSg 330 (382)
+||+++|++.|.+. |+.+|+..|+-.. ..+.....++++.+++.+..-. +..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCCc
Confidence 99999999999865 9999998664321 1123344567778887776543 5689999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
||+||++|||||+++|+|++-|||+|+||+.+.++|++.|++.. .+.|+|.
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~ 203 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIV 203 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999999999875 4678763
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=318.83 Aligned_cols=178 Identities=34% Similarity=0.533 Sum_probs=160.2
Q ss_pred EEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997642 3699999999999999999999999999999999999999999999998 5
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
++|++|+|++|+.|++||+.++.. .++++..++++.+++.+++..+|.|+++.+.+....||||||||++||||++.
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~ 144 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP---FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS 144 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC---cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998643 34566778888889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHH-HHHHh-CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQA-VDRLL-GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~-l~~~~-~~~TvI~ 381 (382)
+|+++||||||++||+++.+.+.+. +++.. +++|+|+
T Consensus 145 ~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~ 183 (204)
T cd03250 145 DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRIL 183 (204)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEE
Confidence 9999999999999999999988874 56554 3577764
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=326.31 Aligned_cols=183 Identities=37% Similarity=0.530 Sum_probs=166.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC-CCCHHHHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ-NIRLDSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~-~~~~~~~r~~i 265 (382)
-++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||++++.|+++|++|.|.++|.++. +.+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 47899999999876 67999999999999999999999999999999999999999999999999988 47888999999
Q ss_pred EEecCCC--ccccccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
|||+|+| .+|..||.|.++||......+.+ ++.++++.+++.++.++.| .+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 69999999999999765555654 4567888888888876665 89999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC--Cceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH--HTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~--~TvI~ 381 (382)
.+|+.+|++||||||||+||+...+.+++.++++.++ +|+|.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~ 194 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIII 194 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 9999999999999999999999999999999999764 57764
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=342.93 Aligned_cols=183 Identities=33% Similarity=0.472 Sum_probs=156.9
Q ss_pred EEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---Hh
Q 016798 188 VKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR 262 (382)
Q Consensus 188 i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r 262 (382)
|+++||+++|+++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999642 246999999999999999999999999999999999999999999999999998877654 47
Q ss_pred cceEEecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 263 RHVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
++|+|++|++.+|+ .|++||+.++......+ .+++.++++.+++.++.+..| .+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 78999999999995 69999998753211122 234567777888777665544 799999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||+.+|++||||||||+||+.+...+++.|+++.+ +.|+|+
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiil 196 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL 196 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999864 577764
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=320.66 Aligned_cols=177 Identities=37% Similarity=0.507 Sum_probs=152.0
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEec
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 269 (382)
++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++++++|++
T Consensus 2 ~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~ 77 (205)
T cd03226 2 IENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVM 77 (205)
T ss_pred cccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEe
Confidence 67999999752 369999999999999999999999999999999999999999999999998854 45677899999
Q ss_pred CCC--ccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 270 QDI--TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 270 Q~~--~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
|++ .+|..|++||+.++........+++.++++..++.++.+..| ..||||||||++||||++.+|+
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCCC
Confidence 998 467889999998754322223456778888888877665554 5899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 181 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIV 181 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999884 4677764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=324.07 Aligned_cols=183 Identities=39% Similarity=0.550 Sum_probs=155.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC-----CCCCceEEEcCEeCCCCC--HHH
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY-----DPLSGCILVDDHDVQNIR--LDS 260 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~-----~~~~G~i~~~g~~~~~~~--~~~ 260 (382)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 4789999999753 6999999999999999999999999999999999999 999999999999987766 556
Q ss_pred HhcceEEecCCCccccccHHHHHcCCCCCCCC-----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
++++++|++|++.+|..|++||+.++...... .++++.++++..++.+.....++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 78899999999999988999999875321111 12455667777777665544321 47999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 195 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVI 195 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEE
Confidence 9999999999999999999999999999999999999876667663
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=319.95 Aligned_cols=182 Identities=37% Similarity=0.548 Sum_probs=152.5
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEe
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
+++|++++|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999975324699999999999999999999999999999999999999999999999999887777788899999
Q ss_pred cCCCc--cccccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 269 SQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 269 ~Q~~~--lf~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+|++. +++.|++||+.++......+ .+++.+.++..++.+++.+ ....||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 99984 56789999997642211112 2344556666666555443 3478999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+++|+++||||||++||+.+...+.+.|+++.+ ++|+|.
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~ 189 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIII 189 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999998864 677764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=318.21 Aligned_cols=189 Identities=30% Similarity=0.428 Sum_probs=165.7
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH----HHHhcc
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSLRRH 264 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~r~~ 264 (382)
.+.|++|+|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 467999999865 469999999999999999999999999999999999999999999999998876542 235678
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
++|++|++.+|+.|++||+.+..+ .++++..++++..++.++++.+|.|+++.++....+||||||||++||||++.
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSP---FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCc---CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 999999999999999999987643 24556678888899999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHH--HHHHHhC-CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQ--AVDRLLG-HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~--~l~~~~~-~~TvI~ 381 (382)
+|+++||||||++||+.+...+.+ .++.+.+ ++|+|+
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~ 197 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVL 197 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999998887 5555543 567764
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=335.60 Aligned_cols=356 Identities=20% Similarity=0.206 Sum_probs=278.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Q 016798 8 ISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELL 87 (382)
Q Consensus 8 ~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 87 (382)
+...+..++++-+++..++..++++++.+.+.+..+..+.+...+...-++.+.|-.++.|+.+.++.++..........
T Consensus 204 I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~ 283 (604)
T COG4178 204 IPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWR 283 (604)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555566688999999999999999999999999999999999999999998887776655443222
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016798 88 KKRKMKALIPQTVQLIYFG-ALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLT 166 (382)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~ 166 (382)
+.......+..+....... .++-+.+++-....|+++.|.++.....+..+...+..+...+..+..-.+...|+.++.
T Consensus 284 ~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~ 363 (604)
T COG4178 284 RLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFR 363 (604)
T ss_pred HHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 2221111122222111111 233333455567789999999999999999999999999999999999999999998875
Q ss_pred cC------cccccCCCCC--CCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 167 KF------KSKVIEKPDA--VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 167 ~~------~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.. +.+....... .........|+++|++..-|++. ..+++.||++++||.+-|.||||||||||+|.|+|+
T Consensus 364 ~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 364 QALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred HHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 32 1111111100 00011146799999999988764 689999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc
Q 016798 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (382)
Q Consensus 239 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld 318 (382)
+|-.+|+|..-. -..+-|+||.|++-.||+||-++|-+..++.+|+++.+++.+++|.++++++.+ .+
T Consensus 443 WP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~ 510 (604)
T COG4178 443 WPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-ED 510 (604)
T ss_pred CccCCCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cC
Confidence 999999987531 224899999999999999999999876555899999999999999999999753 22
Q ss_pred cccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 319 t~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
. =...||+|||||+|+||.++++|++++|||+|||||.++|..+.+.+++..++.|+|
T Consensus 511 ~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvI 568 (604)
T COG4178 511 R----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVI 568 (604)
T ss_pred c----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEE
Confidence 2 247899999999999999999999999999999999999999999999988888887
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=338.16 Aligned_cols=180 Identities=36% Similarity=0.567 Sum_probs=160.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..++++||+++|++ ..+++|+||+|++||+++++|||||||||++++|+||.+|++|+|.+||+++.+++++ ++.|
T Consensus 4 ~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 36999999999983 4699999999999999999999999999999999999999999999999999998876 7789
Q ss_pred EEecCCCccccc-cHHHHHcCCCCC-CCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLM-TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~-~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
++|+|+..||+- ||+|||.||... .... .+++.++++.+++.++-.+.| .+|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 999999999965 999999998651 1122 247789999999999988877 89999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
|||..+|++|+||||.|+||.+-+.+++..++++.+ +.|.|
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i 191 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFV 191 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEE
Confidence 999999999999999999999999999999888754 45555
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=325.44 Aligned_cols=181 Identities=31% Similarity=0.471 Sum_probs=151.7
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH---HHHhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r~~ 264 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 468999999974 359999999999999999999999999999999999999999999999999987664 567889
Q ss_pred eEEecCCCccccc-cHHHHHcCCCC-CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~-~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
++|++|++.+|+. |++||+.++.. ....+. +++.++++..++.++... ...+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL-----------YPAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHH
Confidence 9999999999986 99999987521 111222 234455666665444433 346899999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 192 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIM 192 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 9999999999999999999999999999999999864 677764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=317.85 Aligned_cols=182 Identities=36% Similarity=0.498 Sum_probs=154.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HHhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r~~ 264 (382)
|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 6899999999632 4699999999999999999999999999999999999999999999999999876543 46788
Q ss_pred eEEecCCCcccc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
++|++|++.+|. .|++||+.++...... .++++.++++..++.++....| .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999986 5999999864211111 2345667777777776655544 68999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|.
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 192 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIV 192 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999999754 677764
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=314.23 Aligned_cols=175 Identities=35% Similarity=0.597 Sum_probs=154.4
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
+.++++|++++|++...++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+++
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 56999999999975434699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+|++|+|.+|++|++||+.+... .+.+++.++++ +.+....|||||+||++||||++.+
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~---~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDE---YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred EEEecCCcccCccHHHHhcccCC---CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999976532 23444444332 2456789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+++||||||++||+.+...+.+.|+++.+++|+|.
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 179 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILT 179 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999877778764
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=333.65 Aligned_cols=188 Identities=26% Similarity=0.364 Sum_probs=154.8
Q ss_pred cEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC-------
Q 016798 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI------- 256 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~------- 256 (382)
-|+++|++|+|++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997532 3599999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHHhcceEEecCCC--ccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCC
Q 016798 257 ---------RLDSLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPR 324 (382)
Q Consensus 257 ---------~~~~~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~ 324 (382)
+...+|++++||+|+| .+|+.|++||+.++......+.++..+. ..++++.+ |++ ....+.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL-----AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCC
Confidence 3457788999999998 6899999999988642222333332211 12334443 453 345677
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~Tiii 231 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFV 231 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 89999999999999999999999999999999999999999999999875 4678764
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=329.27 Aligned_cols=184 Identities=30% Similarity=0.493 Sum_probs=159.4
Q ss_pred cEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 187 DVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
-|+++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48899999999743 24599999999999999999999999999999999999999999999999999887877888899
Q ss_pred EEecCCCc--cccccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~--lf~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+|++|+|. ++..|++||+.++......+ .+++.++++.+++.++.+..| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999984 55679999998763222223 245677888888877766554 68999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tili 196 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVIS 196 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999864 678764
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=322.04 Aligned_cols=184 Identities=31% Similarity=0.415 Sum_probs=152.2
Q ss_pred cEEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---H
Q 016798 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---L 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~ 261 (382)
-++++||+|+|+++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997532 46999999999999999999999999999999999999999999999999998877643 3
Q ss_pred h-cceEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 262 R-RHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 262 r-~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
| +.++|++|++.+|+. |++||+.++......+ .+++.++++..++.++ ......+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 3 679999999999875 9999997632101111 2344555555555443 334457899999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
++||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii 201 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLV 201 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999985 3678764
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-43 Score=318.46 Aligned_cols=179 Identities=38% Similarity=0.532 Sum_probs=150.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 468999999975 369999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|. .|++||+.++......+ .+++.++++..++.++.... ..+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999886 59999998653211111 23455666666666555443 368999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 186 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIY 186 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999753 677764
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=319.42 Aligned_cols=182 Identities=27% Similarity=0.396 Sum_probs=151.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||+++|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 578999999975324699999999999999999999999999999999999999999999999998654 3567788999
Q ss_pred ecCCCccc-cccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLF-SGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf-~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+| ..|++||+.+.......+ .+++.++++..++.+.... ...+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK-----------RARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------hhhhCCHHHHHHHHHHHHH
Confidence 99999998 569999997642111112 2344556666666544332 3468999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~ 187 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIIL 187 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999887777764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=316.81 Aligned_cols=182 Identities=37% Similarity=0.558 Sum_probs=153.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH---HHHhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r~~ 264 (382)
|+++|++++|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999753 469999999999999999999999999999999999999999999999999977654 346788
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
++|++|++.+|+. |++||+.++......+ ++++.++++..++.++.+..| .+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence 9999999999975 9999998642111111 234566777777766555443 68999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiii 191 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVV 191 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999985 4677764
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=318.12 Aligned_cols=183 Identities=33% Similarity=0.453 Sum_probs=150.3
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---Hh
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR 262 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r 262 (382)
|+++||+++|++.. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 67899999997432 35999999999999999999999999999999999999999999999999998776543 34
Q ss_pred -cceEEecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 263 -RHVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 263 -~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+.++|++|++.+|+ .|++||+.++......+ .+++.++++..++++.. ......||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-----------NHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHH
Confidence 67999999999985 59999997632111111 22344555555554443 334478999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||++++|++|||||||++||..+...+.+.|+++.+ ++|+|+
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 197 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLV 197 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999998853 577764
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=317.64 Aligned_cols=182 Identities=30% Similarity=0.471 Sum_probs=152.6
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
|+++||+++|++.. .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 67899999997532 169999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+|++|++.+|+. |++||+.+.......+ .+++.++++..++.+... ....+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHH
Confidence 999999999985 9999997532111112 234555666666655443 345799999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 191 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILF 191 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999999853 678764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=316.71 Aligned_cols=179 Identities=30% Similarity=0.403 Sum_probs=154.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..++++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 478999999964 3699999999999999999999999999999999999999999999999988654 456788999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.+|. .|++||+.++......+++++.++++..++.+..... ...||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999999884 6999999765321123466777888888887765543 4689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 181 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI 181 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999998764 677764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=320.93 Aligned_cols=182 Identities=37% Similarity=0.573 Sum_probs=155.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.++++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4889999999975 35999999999999999999999999999999999999999999999999998777778888999
Q ss_pred EecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChH-HHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 267 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
|++|++.+|+.|++||+.++........+++.+.++..++. ++. .....+||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA-----------TRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh-----------hCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999875321112234555566666553 222 234578999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~ 187 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIW 187 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999998854 678764
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=326.54 Aligned_cols=183 Identities=34% Similarity=0.482 Sum_probs=159.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++|++|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+..+++++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999743 35999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EecCCC--ccccccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 267 LVSQDI--TLFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 267 ~v~Q~~--~lf~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
|++|+| .+|..|++||+.++......+ .+++.++++.+++.++..+.| ..||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 578889999998763211122 245667788888877766655 589999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili 193 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIV 193 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999998854 678764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=316.16 Aligned_cols=179 Identities=32% Similarity=0.528 Sum_probs=153.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++|+|++ .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..++++++|
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 578999999965 36999999999999 99999999999999999999999999999999999987766 667889999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|.. |++||+.+.......+ .+++.++++..++.++.+. ...+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999997532111111 3456677777777665443 2368999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 184 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVIL 184 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999887777764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=336.80 Aligned_cols=181 Identities=31% Similarity=0.492 Sum_probs=157.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48899999999432 4699999999999999999999999999999999999999999999999999887654 47899
Q ss_pred EecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+ .|++||+.++......+ .+++.++++.+++.++.++.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 49999999864321222 245677888888888877766 6999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+++|++|+||||||+||..++..+.+.|+++.+ +.|+|.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~ 190 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLY 190 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999998865 567763
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=297.51 Aligned_cols=177 Identities=37% Similarity=0.513 Sum_probs=156.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|.+++|.|+|... + -.++++|++||++||+||||||||||+++++||..|.+|+|.+||+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~~--~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL--P--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCcc--e--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 5678999999753 2 368999999999999999999999999999999999999999999999877664 567999
Q ss_pred ecCCCccccc-cHHHHHcCCCC-C---CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDL-M---TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~-~---~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++||..||.- ||.+|+.+|.. . ...+.+.++.++..+|+..+.++|| .+||||||||+||||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHH
Confidence 9999999966 99999999853 1 1223578889999999999999999 68999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|+.|||+||||+|+||+.-+.++...+.++.. +.|+++
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tllm 185 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM 185 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 999999999999999999999999999888764 567764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=325.50 Aligned_cols=184 Identities=36% Similarity=0.513 Sum_probs=159.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-++++||+++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999754456999999999999999999999999999999999999999999999999998887777888999
Q ss_pred EecCCC--ccccccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 267 LVSQDI--TLFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 267 ~v~Q~~--~lf~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
|++|++ .+++.|++||+.++......+ .+++.++++.+++.+++...| ..||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 456789999998753211122 244677788888877776665 589999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tili 196 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLS 196 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999875 577764
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=309.90 Aligned_cols=183 Identities=33% Similarity=0.492 Sum_probs=157.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HHh
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLR 262 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r 262 (382)
..|++++|+++|+++ .+++||||+|++||+++|+||||||||||+|+|.|+.+|++|+|.++|.++.+++.+ .+|
T Consensus 7 ~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 469999999999754 699999999999999999999999999999999999999999999999999998765 458
Q ss_pred cceEEecCCCccccc-cHHHHHcCCC-CCCCCCHHHHH----HHHHHcChHHH-HHhCCCCcccccCCCCCCCChHHHHH
Q 016798 263 RHVGLVSQDITLFSG-TVAENIGYRD-LMTKIDMERVE----HTARTANADEF-VRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eNi~~~~-~~~~~~~~~~~----~~~~~~~l~~~-i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
+++|+++|+..||+. ||+||+.|-- .+...+++.++ ..++.+|+... .+.+| .+||||++.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 899999999999976 9999998742 22334444443 45667777666 55555 8999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|||||+..||+|+++|||||||||.+...+.+.|+++.+ +.|+|+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~ 201 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIM 201 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEE
Confidence 9999999999999999999999999999999999988865 556653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=324.11 Aligned_cols=184 Identities=30% Similarity=0.503 Sum_probs=156.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|+++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999743456999999999999999999999999999999999999999999999999998777778889999
Q ss_pred EecCCCc--cccccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 267 LVSQDIT--LFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 267 ~v~Q~~~--lf~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
|++|+|. ++..|++||+.++......+.+ .+.++++..++.++.... ..+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHHH
Confidence 9999983 5567999999875321112222 345666777776665554 3799999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii 198 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLIS 198 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999999999999999999999999999864 367764
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=335.71 Aligned_cols=183 Identities=34% Similarity=0.457 Sum_probs=153.0
Q ss_pred EEEEeEEEEeCC--CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---Hh
Q 016798 188 VKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR 262 (382)
Q Consensus 188 i~~~~v~f~y~~--~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r 262 (382)
|+++||+|+|+. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 689999999972 2346999999999999999999999999999999999999999999999999998876554 47
Q ss_pred cceEEecCCCcccc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 263 RHVGLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
++++|++|++.+|. .|++||+.++......+. +++.+.++..++.++... ...+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADR-----------YPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 88999999999986 599999986532111222 344555666655544433 44789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiil 196 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVL 196 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999864 577764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=320.18 Aligned_cols=182 Identities=36% Similarity=0.506 Sum_probs=151.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC---HHHHhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~r~~ 264 (382)
|+++||+++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999752 36999999999999999999999999999999999999999999999999998776 4567888
Q ss_pred eEEecCCCcccc-ccHHHHHcCCCCC------------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 265 VGLVSQDITLFS-GTVAENIGYRDLM------------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eNi~~~~~~------------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
++|++|++.+|. .|++||+.++... .....+++.++++..++.++ ......+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCHH
Confidence 999999999886 5999999764311 00112334455555555433 34456899999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 200 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIV 200 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999999853 678764
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=319.78 Aligned_cols=182 Identities=37% Similarity=0.493 Sum_probs=150.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH---HHHhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r~~ 264 (382)
|+++||+++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 678999999972 2469999999999999999999999999999999999999999999999999877654 346788
Q ss_pred eEEecCCCcccc-ccHHHHHcCCCCCC------------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 265 VGLVSQDITLFS-GTVAENIGYRDLMT------------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eNi~~~~~~~------------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
++|++|++.+|. .|++||+.++.... ....+++.++++..++.++. .....+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHH
Confidence 999999999886 59999998653110 01123445555555554443 3455799999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 201 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVII 201 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999999998853 677764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=327.35 Aligned_cols=186 Identities=33% Similarity=0.508 Sum_probs=153.7
Q ss_pred cEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC--HHHH
Q 016798 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--LDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~--~~~~ 261 (382)
.|+++||+|+|+... .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999997532 36999999999999999999999999999999999999999999999999997653 3467
Q ss_pred hcceEEecCCC--ccccccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 262 RRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 262 r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
+++++||+|+| .+|+.|++||+.++....+.+.+ ++.++++.+++. +.+........||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 88999999998 57889999999875322223333 344555555553 0122344568999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~ 200 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIIL 200 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999864 678764
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=319.15 Aligned_cols=185 Identities=28% Similarity=0.424 Sum_probs=151.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~ 266 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999974 359999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCC----------CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKI----------DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~----------~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
|++|++.+|+. |++||+.++...... ..++. ...+.++++.+ |++.........||||||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA-----RERAEELLERV--GLADLADRPAGELSYGQQRR 151 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHH-----HHHHHHHHHHc--CccchhhCChhhCCHHHHHH
Confidence 99999999986 999999875321110 01111 11123344443 45555566678999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
++||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 198 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLL 198 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999999886 5678764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=315.91 Aligned_cols=174 Identities=29% Similarity=0.456 Sum_probs=147.8
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEec
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 269 (382)
++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.++|++
T Consensus 2 ~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~ 74 (213)
T cd03235 2 VEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVP 74 (213)
T ss_pred cccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEec
Confidence 6799999975 35999999999999999999999999999999999999999999999998764 4677899999
Q ss_pred CCCcc---ccccHHHHHcCCCCCC--------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 270 QDITL---FSGTVAENIGYRDLMT--------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 270 Q~~~l---f~~ti~eNi~~~~~~~--------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
|++.+ |+.|++||+.++.... ....+++.++++..++.++.... ..+||||||||++|
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~l 143 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRVLL 143 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHH
Confidence 99986 5689999998753210 01234566777777777665443 36899999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~ 187 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILV 187 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999976 5677764
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=320.39 Aligned_cols=186 Identities=32% Similarity=0.443 Sum_probs=158.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC---CCCceEEEcCEeCCCCCHHHHhc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~r~ 263 (382)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999975 369999999999999999999999999999999999985 68999999999998887778888
Q ss_pred ceEEecCCCccccccHHHHHcCCCCCCC------CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 264 HVGLVSQDITLFSGTVAENIGYRDLMTK------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~ti~eNi~~~~~~~~------~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
.++|++|++.+|+.|++||+.++..... ..++++.++++.+++.+++.. ...+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHHH
Confidence 9999999999999999999987531111 112345666777777554432 234566899999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 196 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIM 196 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999877888764
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=315.43 Aligned_cols=178 Identities=35% Similarity=0.459 Sum_probs=149.8
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997521 369999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEecCCCcccc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+|++|++.+|+ .|++||+.++...... ..+++.++++..++.++....| .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999987 5999999764211111 1345566777777766655544 689999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii 187 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLL 187 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999998742 677764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=313.59 Aligned_cols=182 Identities=30% Similarity=0.437 Sum_probs=151.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---Hhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r~~ 264 (382)
|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 6899999999532 46999999999999999999999999999999999999999999999999998765443 6788
Q ss_pred eEEecCCCccc-cccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLF-SGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
++|++|++.+| ..|++||+.++......+.+ ++.++++..++.++... ...+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHHH
Confidence 99999999975 56999999875211112222 34556666666655444 3478999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++.+|+++||||||++||+.+.+.+.+.|+++.+ +.|+|+
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 192 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLM 192 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999998854 566653
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=317.53 Aligned_cols=183 Identities=33% Similarity=0.443 Sum_probs=152.8
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HHh
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLR 262 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r 262 (382)
|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68899999997531 2699999999999999999999999999999999999999999999999999876543 347
Q ss_pred cceEEecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 263 RHVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
+.++|++|++.+|. .|++||+.++......+ .+++.++++..++.++.+. ...+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 78999999999997 59999997642111112 2345566666666555444 34789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii 196 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVL 196 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999998863 677764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=318.35 Aligned_cols=180 Identities=37% Similarity=0.517 Sum_probs=150.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 3789999999975 369999999999999999999999999999999999999999999999999876543 356899
Q ss_pred EecCCCcccc-ccHHHHHcCCCCCCCC----C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 267 LVSQDITLFS-GTVAENIGYRDLMTKI----D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 267 ~v~Q~~~lf~-~ti~eNi~~~~~~~~~----~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
|++|+|.+|. .|++||+.++...... + .+++.++++..++.++... ...+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR-----------YPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 9999999986 5999999875321111 1 1234555666666554443 34789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii 192 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVF 192 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999864 678774
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=326.01 Aligned_cols=183 Identities=32% Similarity=0.436 Sum_probs=152.4
Q ss_pred EEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC----CCHHH
Q 016798 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----IRLDS 260 (382)
Q Consensus 188 i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~----~~~~~ 260 (382)
|+++||+|+|+... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999853 33557
Q ss_pred HhcceEEecCCC--ccccccHHHHHcCCCCCCCCCHH----HHHHHHHHcChH-HHHHhCCCCcccccCCCCCCCChHHH
Q 016798 261 LRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 261 ~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
+|+.++||+|+| .+|+.|+.||+.++......+.+ ++.++++.+++. ++. ......||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW-----------EKSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc-----------cCCcccCCHHHH
Confidence 788999999998 78999999999876422122332 344555555553 232 344579999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~ 199 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL 199 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999999998764 678774
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=312.81 Aligned_cols=181 Identities=35% Similarity=0.491 Sum_probs=150.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC--CCHHHHhcce
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~i 265 (382)
|+++||+++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 468999999975 369999999999999999999999999999999999999999999999999853 3445678899
Q ss_pred EEecCCCcccc-ccHHHHHcCCCC-CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~-~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+|++|++.+|+ .|++||+.++.. ....+. +++.++++..++.+++.. ...+||||||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-----------YPAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-----------CccccCHHHHHHHHHH
Confidence 99999999986 599999976521 111222 234455555555544443 4479999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|.
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~ 190 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVV 190 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999999864 677763
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=312.27 Aligned_cols=179 Identities=34% Similarity=0.530 Sum_probs=150.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 468999999975 3699999999999999999999999999999999999999999999999998765432 467999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|. .|++||+.++......+ ++++.++++..++.++.+.. ..+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRK-----------PKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999985 59999998652111112 23445566677776655543 378999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 186 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIY 186 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999998863 678764
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=333.77 Aligned_cols=180 Identities=34% Similarity=0.513 Sum_probs=156.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDIC 81 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 5899999999974 358999999999999999999999999999999999999999999999999987664 367899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+. |++||+.|+......+ .+++.++++..++.++.++.| .+||||||||+|||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 9999999864211122 346667788888877665554 7899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+++|++|+||||||+||+.+...+.+.|+++.+ +.|+|.
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~ 192 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLY 192 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999998865 577763
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=313.89 Aligned_cols=182 Identities=29% Similarity=0.406 Sum_probs=148.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~ 266 (382)
|+++||+++|++ .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... +++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999975 369999999999999999999999999999999999999999999999999987776554 56799
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCC--CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKI--DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
|++|++.+|+. |++||+.++...... ..+++.++++.. . +++........+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~----~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------P----RLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------H----hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 99999999986 999999875432110 011222222222 1 1223334456789999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
++|+++||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 187 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILL 187 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999886 4677764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=318.75 Aligned_cols=184 Identities=35% Similarity=0.516 Sum_probs=152.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
++++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999752 359999999999999999999999999999999999999999999999999988777778889999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|+ .|++||+.++......+ .+++.++++..++.+ +........+||||||||++||||+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHHH
Confidence 999999996 59999997653211112 223344444444432 0123445689999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii 191 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVF 191 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999864 677764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=318.79 Aligned_cols=187 Identities=35% Similarity=0.492 Sum_probs=155.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~ 258 (382)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 5 ~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 5 PKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred cEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 36999999999974 359999999999999999999999999999999999974 589999999999864 344
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCC-----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..+|+.++|++|++.+|+.|++||+.++...... ..+++.++++.+++.+++. +.+.....+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 5678899999999999989999999864211111 1345566677777654432 223455689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii 203 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIII 203 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999999877778764
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=307.79 Aligned_cols=180 Identities=25% Similarity=0.339 Sum_probs=153.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..++++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 468999999975 36999999999999999999999999999999999999999999999999987764 356788999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.+|+ .|++||+.+........++++.++++..++.++.+.. ..+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLP-----------AAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCC-----------hhhcCHHHHHHHHHHHHHhcCC
Confidence 999999886 5999999764321111234577788888887765432 3689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+++||||||++||..+.+.+.+.|+++. +++|+|+
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 182 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLL 182 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999874 4667763
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=324.28 Aligned_cols=188 Identities=28% Similarity=0.474 Sum_probs=153.0
Q ss_pred cEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC----CHH
Q 016798 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~----~~~ 259 (382)
.|+++||+|+|+++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997432 3699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcceEEecCCC--ccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCChHHHHHH
Q 016798 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 260 ~~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lSgGq~Qri 336 (382)
.+|++|+||+|+| .+|+.|++||+.++......+.++..+. ..++++.+ |+++ .......+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 6788999999998 5888899999987632222333332221 12233333 5543 33456789999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+|||||+.+|+++||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~ 201 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIIL 201 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999985 3678774
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=306.12 Aligned_cols=183 Identities=35% Similarity=0.431 Sum_probs=153.7
Q ss_pred cEEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC-HHHHhc
Q 016798 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~r~ 263 (382)
.++++|+++.|+.+. .++++||||+|.+||++||||+||||||||.++|+|+.+|++|+|.++|.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999998653 25999999999999999999999999999999999999999999999998876542 336678
Q ss_pred ceEEecCCCc--cc-cccHHHHHcCCCCCCC--CCHHHHHHHHHHcChH-HHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 264 HVGLVSQDIT--LF-SGTVAENIGYRDLMTK--IDMERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 264 ~i~~v~Q~~~--lf-~~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
.|-+|+|||+ += .-||++-|.-....+. ...+++.++++.+++. +|..+.| .+||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 8999999998 32 2388887753211111 2345688999999986 4666766 789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCC--cee
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH--TVR 380 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~--TvI 380 (382)
|||||.-+|++||||||||+||...+.+|++.+.++.+++ |.|
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l 196 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYL 196 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEE
Confidence 9999999999999999999999999999999999998765 655
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=324.73 Aligned_cols=185 Identities=30% Similarity=0.416 Sum_probs=152.4
Q ss_pred cEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC----CCHH
Q 016798 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~----~~~~ 259 (382)
.|+++|++|+|++.+ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 369999999999999999999999999999999999999999999999999863 3455
Q ss_pred HHhcceEEecCCC--ccccccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.+|+.++||+|+| .+|+.|++||+.++......+.+ .+.++++.+++.+. ........||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEE----------LLARSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChh----------hhhCCcccCCHHHH
Confidence 6778899999998 68888999999876322222332 34455555555321 12334579999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tvii 201 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVL 201 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999864 678764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=313.32 Aligned_cols=184 Identities=29% Similarity=0.377 Sum_probs=154.8
Q ss_pred cEEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---H
Q 016798 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---L 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~ 261 (382)
-|+++|++++|+++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 589999999997532 25899999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hcceEEecCCCccccc-cHHHHHcCCCCCCC----CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 262 -RRHVGLVSQDITLFSG-TVAENIGYRDLMTK----IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 262 -r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~----~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
++.++|++|++.+|.. |++||+.++..... ...+++.++++..++.++....| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3579999999999875 99999975321111 12345667777878776665544 6899999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 202 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIL 202 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999998853 567764
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=300.11 Aligned_cols=150 Identities=47% Similarity=0.721 Sum_probs=140.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 46899999997544469999999999999999999999999999999999999999999999999988888888899999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++|++.+|+.|++||+ ||||||||++||||++.+|+
T Consensus 81 ~~q~~~~~~~tv~~~l--------------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 81 LPQDDELFSGSIAENI--------------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred ECCCCccccCcHHHHC--------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999997 99999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 151 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIV 151 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999998864 667764
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=318.29 Aligned_cols=185 Identities=36% Similarity=0.492 Sum_probs=154.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC-----CceEEEcCEeCCCC--CHHH
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQNI--RLDS 260 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-----~G~i~~~g~~~~~~--~~~~ 260 (382)
|+++||+++|++. .+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999998753 3456
Q ss_pred HhcceEEecCCCccccccHHHHHcCCCCCCC-CC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~-~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
+++.++|++|++.+|+.|++||+.++..... .+ .+++.++++..++.+++. ..+.....+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHH
Confidence 6789999999999999999999986421111 11 234556666666653221 12334557999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 198 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVI 198 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEE
Confidence 9999999999999999999999999999999999999877777764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=306.09 Aligned_cols=178 Identities=26% Similarity=0.367 Sum_probs=153.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ..++++++|
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 468999999975 35899999999999999999999999999999999999999999999999986543 457789999
Q ss_pred ecCCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.++ ..|++||+.+.... .+++++.++++..++.++... ...+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~--~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHAD--HSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred eccccccCCCcCHHHHHHhhccc--ccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCC
Confidence 99999887 56999999876432 246677888888888755433 24689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 145 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii 180 (201)
T cd03231 145 PLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVL 180 (201)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999998754 677764
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=311.89 Aligned_cols=180 Identities=32% Similarity=0.450 Sum_probs=152.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999975 3699999999999999999999999999999999999999999999999988653 3566788999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|+. |++||+.+....... .++++.++++..++.++.+..| .+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999998875 999999763211111 1345667777777776654433 68999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 187 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL 187 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999998764 567764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=314.17 Aligned_cols=185 Identities=30% Similarity=0.453 Sum_probs=149.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~ 266 (382)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 478999999974 359999999999999999999999999999999999999999999999999887765553 56799
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
|++|++.+|+. |++||+.++........++..+ .+.++++.+ |++........+||||||||++||||++.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999987 9999998643211112211111 122333333 444444556689999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~ 188 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLI 188 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999998864 677764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=321.39 Aligned_cols=184 Identities=30% Similarity=0.437 Sum_probs=158.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCC---ceEEEcCEeCCCCCHHHHhc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS---GCILVDDHDVQNIRLDSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~~r~ 263 (382)
.|+++|++|+|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 589999999997543469999999999999999999999999999999999999987 89999999998777777788
Q ss_pred ceEEecCCCc--cccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 264 HVGLVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 264 ~i~~v~Q~~~--lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
+++|++|+|. +++.|++||+.++......+. +++.++++.+++.++....| .+||||||||++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv~ 153 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRVA 153 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHH
Confidence 9999999984 567899999987532222333 34566777888877666555 799999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli 199 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVIS 199 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999864 577764
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=332.00 Aligned_cols=180 Identities=33% Similarity=0.452 Sum_probs=154.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999975 3589999999999999999999999999999999999999999999999999877653 67899
Q ss_pred EecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+ .|++||+.|+......+ .+++.++++..++.++.++ ...+||||||||+|||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~-----------~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERK-----------YPGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999996 59999999864221222 2345566666666555544 447999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+++|++++||||||+||..+...+.+.|+++.+ +.|+|.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~ 190 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIM 190 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999998764 567764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=301.75 Aligned_cols=152 Identities=36% Similarity=0.558 Sum_probs=139.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++..+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999976434699999999999999999999999999999999999999999999999988665 5567889999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++|++.+|+.|++||+ ...||||||||++||||++++|+
T Consensus 80 ~~q~~~~~~~tv~~~i-----------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 80 LNQRPYLFDTTLRNNL-----------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EccCCeeecccHHHhh-----------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999997 46899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~ 152 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIW 152 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999877777764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=318.11 Aligned_cols=188 Identities=36% Similarity=0.481 Sum_probs=156.5
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CC
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IR 257 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~ 257 (382)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 456999999999974 369999999999999999999999999999999999986 589999999999853 35
Q ss_pred HHHHhcceEEecCCCccccccHHHHHcCCCCCC-CCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT-KIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 258 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~-~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
...+|++++|++|++.+|+.|++||+.++.... ..+. +++.++++.+++.+.+ ...+.+...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHH
Confidence 567788999999999999999999998753211 1222 3455666666654322 223455678999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|||++||||++.+|++|||||||++||+.+++.+.+.|+++.+++|+|+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii 210 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVI 210 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999999999999999999999999999877777764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=321.38 Aligned_cols=183 Identities=31% Similarity=0.454 Sum_probs=154.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC--CCCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 264 (382)
-|+++|++|+|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999632 46999999999999999999999999999999999999999999999999984 3345677889
Q ss_pred eEEecCCC--ccccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 265 VGLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 265 i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
++|++|+| .+|+.|++||+.++......+. +.+.++++..++.++.+ ....+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHHH
Confidence 99999998 5788999999987532111222 34556667777665443 3468999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~till 197 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIII 197 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999998864 678764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=318.97 Aligned_cols=188 Identities=34% Similarity=0.474 Sum_probs=157.0
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCC--CC
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IR 257 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~--~~ 257 (382)
.+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 457999999999974 3699999999999999999999999999999999999975 89999999999864 34
Q ss_pred HHHHhcceEEecCCCccccccHHHHHcCCCCCCCC--C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI--D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 258 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~--~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
...+|+.++|++|++.+|+.|++||+.++...... + .+++.++++.+++.+++. ..+.....+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 55678899999999999988999999864211111 1 234566677777654332 2234556899999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiii 217 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVI 217 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999999999999877778764
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=308.13 Aligned_cols=179 Identities=30% Similarity=0.416 Sum_probs=148.1
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH----HHHhcce
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSLRRHV 265 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~r~~i 265 (382)
++||++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.+
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4689999974 369999999999999999999999999999999999999999999999999764432 2356789
Q ss_pred EEecCCCcccc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+|++|++.+|+ .|++||+.++...... ..+++.++++..++.++.+ ....+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-----------QKIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-----------CChhhCCHHHHHHHHHHH
Confidence 99999999997 5999999864211111 1334556666666654433 334789999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 189 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIII 189 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999998764 577764
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=309.86 Aligned_cols=183 Identities=30% Similarity=0.439 Sum_probs=153.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5899999999974 36999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EecCCCccccccHHHHHcCCCCC--CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 267 LVSQDITLFSGTVAENIGYRDLM--TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 267 ~v~Q~~~lf~~ti~eNi~~~~~~--~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|++|++.+|+.|++||+.+.... ...+.+++.+.++..++.+ +.......+||||||||++||||+++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999763210 0112233444555554421 23345568999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii 193 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLW 193 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999853 567763
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=306.15 Aligned_cols=180 Identities=22% Similarity=0.320 Sum_probs=154.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 688999999975 35999999999999999999999999999999999999999999999999987654 356778999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCC-CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
++|++.+++ .|++||+.++..... .+++++.++++..++.++.+. ....||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 999999886 599999986532211 235677788888888766543 2468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 184 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVIL 184 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999998753 567663
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=317.67 Aligned_cols=187 Identities=33% Similarity=0.463 Sum_probs=155.8
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~ 258 (382)
..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 12 ~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 36999999999975 359999999999999999999999999999999999987 689999999999853 456
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCCC---HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~---~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
.++|+.++|++|++.+|+.|++||+.++....... ++++.++++.+++.+. ++..+.....+||||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE-------CKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch-------hhhhhCCCcccCCHHHHHH
Confidence 67788999999999999889999998764221111 2344555666555322 2233445668999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii 208 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVI 208 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999877777764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=315.07 Aligned_cols=187 Identities=33% Similarity=0.439 Sum_probs=155.1
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~ 258 (382)
.-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 6 AIIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred ceEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 36999999999974 3599999999999999999999999999999999999997 48999999998853 344
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCC-CC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~-~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..+|+.++|++|++.+|+.|++||+.++..... .+ ++.+.++++.+++.+.+ ++.+++ ...+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 567889999999999998999999987532111 11 23455666666664333 223343 4679999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii 204 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIII 204 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999977777764
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=318.96 Aligned_cols=182 Identities=29% Similarity=0.476 Sum_probs=156.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
++++|++++|++. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999643 359999999999999999999999999999999999999999999999999987777778889999
Q ss_pred ecCCCc--cccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 268 VSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 268 v~Q~~~--lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
++|++. +|+.|++||+.++......+. +.+.++++.+++.++..+.| ..||||||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHHH
Confidence 999984 778899999986432112232 34567777777776665544 6899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli 193 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIF 193 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999998864 577764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=310.22 Aligned_cols=187 Identities=33% Similarity=0.424 Sum_probs=147.8
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH---HHHh
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLR 262 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r 262 (382)
|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999997531 269999999999999999999999999999999999999999999999999987763 5678
Q ss_pred cceEEecCCC--ccc-cccHHHHHcCCCCCC--CCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHHHH
Q 016798 263 RHVGLVSQDI--TLF-SGTVAENIGYRDLMT--KIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 263 ~~i~~v~Q~~--~lf-~~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~Qri 336 (382)
++++|++|++ .++ ..|++||+.++.... ...++....+. .++++.+ |+. ..+.....+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 8999999999 344 469999997532111 11111111110 1223322 332 234455689999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 201 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLF 201 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999999999864 678764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=312.43 Aligned_cols=184 Identities=33% Similarity=0.484 Sum_probs=148.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 688999999974 35999999999999999999999999999999999999999999999999987766543 458999
Q ss_pred ecCCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.+| ..|++||+.+.......+.++..+ .+.++++.+ |++........+||||||||++||||++++|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999885 679999997643211122221111 112233332 4444455566899999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii 188 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLW 188 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999986 3677764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=323.30 Aligned_cols=184 Identities=28% Similarity=0.400 Sum_probs=151.6
Q ss_pred cEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC--------
Q 016798 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-------- 255 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~-------- 255 (382)
.|+++||+|+|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 378999999997532 259999999999999999999999999999999999999999999999887632
Q ss_pred ----------------CCHHHHhcceEEecCCC--ccccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChH-HHHHh
Q 016798 256 ----------------IRLDSLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANAD-EFVRT 312 (382)
Q Consensus 256 ----------------~~~~~~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~-~~i~~ 312 (382)
.+...+|++|+||+|+| .+|..|++||+.++......+. +++.++++.+++. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-- 159 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL-- 159 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh--
Confidence 13456788999999986 5788899999988642222333 3345556666553 333
Q ss_pred CCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 313 lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
.....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 160 ---------~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiii 220 (305)
T PRK13651 160 ---------QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIIL 220 (305)
T ss_pred ---------hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 344589999999999999999999999999999999999999999999998854 678764
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=308.77 Aligned_cols=177 Identities=24% Similarity=0.442 Sum_probs=146.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 468999999974 359999999999999999999999999999999999999999999999988753 46778999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|.. |++||+.+.......+ .+++.+.++..++.+.. .....+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHH
Confidence 9999999875 9999997642111111 23344455555554433 344578999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~ 183 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVIL 183 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999998753 567764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=318.07 Aligned_cols=182 Identities=32% Similarity=0.485 Sum_probs=153.2
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC-HHHHhcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSLRRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i~ 266 (382)
|+++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 6899999999643 35999999999999999999999999999999999999999999999999997765 356778899
Q ss_pred EecCCCc--cccccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 267 LVSQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 267 ~v~Q~~~--lf~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
|++|+|. +++.|++||+.++......+ .+++.++++..++.++... ....||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHHH
Confidence 9999985 56789999998753211122 2345556666666655444 34799999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~ 191 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVY 191 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999998764 677764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=333.32 Aligned_cols=182 Identities=34% Similarity=0.514 Sum_probs=159.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++..+++++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4889999999975 46999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EecCCCcc-ccccHHHHHcCCCCC--------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 267 LVSQDITL-FSGTVAENIGYRDLM--------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 267 ~v~Q~~~l-f~~ti~eNi~~~~~~--------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
||+|++.+ |+.|++||+.++... ...+.+.+.++++.+++.++.++ ...+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 99999997 577999999876421 01124567788888888776644 34789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|||||+++|++|||||||++||+.+...+++.|+++. +++|+|+
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIi 194 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVA 194 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999986 4677764
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=330.00 Aligned_cols=181 Identities=36% Similarity=0.514 Sum_probs=157.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. ++.+
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999975 3589999999999999999999999999999999999999999999999999876654 5789
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+||+|++.+|+. |++||+.|+......+ .+++.++++..++.++.++.| .+||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999966 9999999864221222 235667788888888777766 689999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||+++|++|+||||||+||..++..+.+.|+++.+ +.|+|.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~ 200 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVF 200 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999864 567763
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=320.31 Aligned_cols=185 Identities=30% Similarity=0.414 Sum_probs=150.7
Q ss_pred cEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC----CHH
Q 016798 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~----~~~ 259 (382)
.|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999997532 3699999999999999999999999999999999999999999999999998754 345
Q ss_pred HHhcceEEecCCC--ccccccHHHHHcCCCCCCCCCHHH----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.+|+.|+|++|++ .+|+.|++||+.++......+.++ +.++++..++.+ ........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 6788899999998 578889999998642111123322 233344444421 123445679999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 200 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVL 200 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999999998864 677764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=314.74 Aligned_cols=176 Identities=32% Similarity=0.442 Sum_probs=151.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 35999999999975 36999999999999999999999999999999999999999999999998763 457889
Q ss_pred EEecCCCcccc-ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+|++|++.+|+ .|++||+.++.. ...++++.++++..++.++... ...+||||||||++||||+++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~--~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK--GQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIH 150 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc--chHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhc
Confidence 99999999987 599999987532 1124566677777777655443 347999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+|+++||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tvii 189 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLL 189 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999874 3677764
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=331.45 Aligned_cols=180 Identities=34% Similarity=0.528 Sum_probs=153.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEE
Confidence 4899999999975 358999999999999999999999999999999999999999999999999987654 356899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+. |++||+.++......+ .+++.++++..++.++.++.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 9999998763211122 235566777777766655544 6899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~ 189 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 9999999999999999999999999999998754 677764
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=329.21 Aligned_cols=180 Identities=33% Similarity=0.495 Sum_probs=154.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 4889999999975 359999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EecCCCccccc-cHHHHHcCCCCC----CCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLM----TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~----~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
||+|++.+|+. |++||+.++... ...+ .+++.++++.+++.++.++.| .+||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999975 999999986321 0112 245566777777766655544 799999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||+++|++||||||||+||+.++..+.+.|+++.+ +.|+|.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~ 192 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF 192 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999865 567763
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=317.40 Aligned_cols=182 Identities=35% Similarity=0.438 Sum_probs=157.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999974 36999999999999999999999999999999999999999999999999998878788888999
Q ss_pred EecCCCccccc-cHHHHHcCCCCC--------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLM--------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~--------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
|++|++.+|.. |+.||+.++... ....++++.++++.+++.+++...| .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence 99999887655 999999865310 0112345677788888876665544 589999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii 203 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIA 203 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999853 577764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=305.31 Aligned_cols=177 Identities=34% Similarity=0.488 Sum_probs=151.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 4689999999742 2 39999999999999999999999999999999999999999999999876654 3578999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCC-C---CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMT-K---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~-~---~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|+. |++||+.++.... . .+++++.++++.+++.++....| .+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999976 9999998653210 1 12446777888888877766655 58999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+.+|+++||||||++||..+...+.+.|+++.+ ++|+|+
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 184 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLM 184 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999863 677764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=303.26 Aligned_cols=179 Identities=25% Similarity=0.362 Sum_probs=149.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ....++++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 688999999975 359999999999999999999999999999999999999999999999998864 34567889999
Q ss_pred ecCCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.++ ..|++||+.++... ...+..+.++++..++.++. + ....+||||||||++||||++++|
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHF-SPGAVGITELCRLFSLEHLI-------D----YPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhc-CcchHHHHHHHHHcCCchhh-------h----CChhhcCHHHHHHHHHHHHHhcCC
Confidence 99999987 46999999875311 11233455555555554332 2 223579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+++||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 182 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLL 182 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999999999874 4667663
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=315.32 Aligned_cols=181 Identities=32% Similarity=0.466 Sum_probs=155.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+..++++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999974 369999999999999999999999999999999999999999999999999988777788888999
Q ss_pred ecCCCccccc-cHHHHHcCCCCC--------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 268 VSQDITLFSG-TVAENIGYRDLM--------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~--------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
++|++.+|.+ |++||+.++... .....+++.++++..++.++.+. ....||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHHH
Confidence 9999998876 999999875210 01123355667777777655543 347899999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii 193 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVT 193 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999999998754 678764
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=314.32 Aligned_cols=198 Identities=27% Similarity=0.404 Sum_probs=166.2
Q ss_pred HHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 161 RLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 161 ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.+.+++..+++.. ++.+.+...+.|+++|+++. . .++|+|+||+|++||+++|+|+||||||||+++|+|+++
T Consensus 16 ~~~~~~~~~~~~~---~~~~~~~~~~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~ 88 (282)
T cd03291 16 GFGELLEKAKQEN---NDRKHSSDDNNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred HHHHHHhcccccc---cccccCCCCCeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4555665544321 12222334567999999985 2 359999999999999999999999999999999999999
Q ss_pred CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccc
Q 016798 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (382)
Q Consensus 241 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~ 320 (382)
|++|+|.++| .++|++|++.+|+.|++||+.++.. ....++.++++.+++.+++..+|.++++.
T Consensus 89 p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~---~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 152 (282)
T cd03291 89 PSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS---YDEYRYKSVVKACQLEEDITKFPEKDNTV 152 (282)
T ss_pred CCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc---cCHHHHHHHHHHhCCHHHHHhccccccce
Confidence 9999999988 3999999999999999999987642 23445567778889999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHH-HHHhCCCceec
Q 016798 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV-DRLLGHHTVRE 381 (382)
Q Consensus 321 vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l-~~~~~~~TvI~ 381 (382)
+++.+..||||||||++||||++++|+++||||||++||+.+...+.+.+ +++.+++|+|+
T Consensus 153 ~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIii 214 (282)
T cd03291 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRIL 214 (282)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999998754 56666777764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=310.47 Aligned_cols=182 Identities=28% Similarity=0.387 Sum_probs=149.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH-HhcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~ 266 (382)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 478999999975 36999999999999999999999999999999999999999999999999998776654 466899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCH-HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM-ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|++|++.+|+. |++||+.++........ +...++++..+ +++........+||||||||++||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999976 99999986532111111 12233333322 12233344567899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 187 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILL 187 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 9999999999999999999999999999864 578764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=317.77 Aligned_cols=184 Identities=29% Similarity=0.429 Sum_probs=156.9
Q ss_pred cEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 187 DVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
-|+++||+++|++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48899999999743 23589999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEecCCCc--cccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~--lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+|++|+|. ++..|+.||+.++......+. +++..+++.+++.++.... ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 99999984 667899999986532111222 3446677777777665543 378999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil 196 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLS 196 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999998865 677764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=316.32 Aligned_cols=184 Identities=30% Similarity=0.468 Sum_probs=154.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 58999999999754346899999999999999999999999999999999999999999999999998888788889999
Q ss_pred EecCCCc--cccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 267 LVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 267 ~v~Q~~~--lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
|++|+|. ++..|+++|+.++......+. +++.++++..++.++.+. ...+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999995 445689999987532111222 344556666666554433 34789999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiii 198 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIIS 198 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999864 567763
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=330.15 Aligned_cols=181 Identities=34% Similarity=0.502 Sum_probs=155.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCC--ceEEEcCEeCCCCCHHHHhc
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS--GCILVDDHDVQNIRLDSLRR 263 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~--G~i~~~g~~~~~~~~~~~r~ 263 (382)
+.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.+. .++
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 4 GGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred eEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 57999999999975 359999999999999999999999999999999999999999 999999999987655 367
Q ss_pred ceEEecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
.|+||+|++.+|+. |++||+.|+......+. +++.++++.+++.++.++.| .+||||||||+||
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvaL 148 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIAI 148 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHHH
Confidence 89999999999976 99999987632112232 34566677777766666555 6999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC---CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG---HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~---~~TvI~ 381 (382)
||||+.+|++|+||||||+||+.+...+.+.|+++.+ +.|+|+
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~ 194 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILC 194 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 9999999999999999999999999999999998765 467763
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=315.64 Aligned_cols=186 Identities=31% Similarity=0.424 Sum_probs=154.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCCCHHHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIRLDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~~~~~~ 261 (382)
.|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4889999999975 3599999999999999999999999999999999999974 69999999999988777788
Q ss_pred hcceEEecCCCccc-cccHHHHHcCCCCCCC--CC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 262 RRHVGLVSQDITLF-SGTVAENIGYRDLMTK--ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 262 r~~i~~v~Q~~~lf-~~ti~eNi~~~~~~~~--~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
|+.++|++|++.+| ..|++||+.++..... .+ .+++.++++.+++.+.+. ........+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHHH
Confidence 88999999999865 5699999976431111 01 234566677766644322 1223445789999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 200 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVL 200 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999877777764
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=330.58 Aligned_cols=169 Identities=30% Similarity=0.465 Sum_probs=148.0
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH----hcceEEecCCCccccc
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRHVGLVSQDITLFSG 277 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~ 277 (382)
..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++ |++++||+|++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999999888877 7899999999999975
Q ss_pred -cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEe
Q 016798 278 -TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352 (382)
Q Consensus 278 -ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililD 352 (382)
|++||+.++......+ .+++.++++.+++.++..+.| .+||||||||++|||||+.+|+|+|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999998764322222 345667777777776665554 689999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 353 EATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 353 Epts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||+||+.+...+++.+.++.+ ++|+|+
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~ 185 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVF 185 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999998753 688874
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=323.54 Aligned_cols=182 Identities=32% Similarity=0.473 Sum_probs=151.0
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 36999999999974 46999999999999999999999999999999999999999999999999997654 4578899
Q ss_pred EEecCCCcccc-ccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
||+||++.+|. .|++||+.+.......+.. ++.++++.+++.+ ..++.+ .+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-------KADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCch----hhCCHHHHHHHHHHH
Confidence 99999999986 5999999753221122222 3334444444433 334443 589999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till 193 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILL 193 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999864 677764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=319.40 Aligned_cols=180 Identities=31% Similarity=0.471 Sum_probs=151.5
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH----hcc
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRH 264 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~ 264 (382)
.++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 45688888864 358999999999999999999999999999999999999999999999999987765443 457
Q ss_pred eEEecCCCcccc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
++|++|++.+|+ .|++||+.++...... .++++.++++.+++.+++...| .+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999985 5999999764211111 1345667778888877766655 58999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii 216 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVF 216 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999998853 678764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=312.34 Aligned_cols=181 Identities=34% Similarity=0.451 Sum_probs=150.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC--CHHHHhcce
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI--RLDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~--~~~~~r~~i 265 (382)
|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...+++++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999974 3699999999999999999999999999999999999999999999999998764 335678889
Q ss_pred EEecCCCcccc-ccHHHHHcCCCC-CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~-~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+|++|++.+|. .|++||+.++.. ....+. +++.++++..++.+.. ......||||||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-----------HHYPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-----------hcChhhcCHHHHHHHHHH
Confidence 99999999886 599999986521 111122 2334455555554443 334579999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 191 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVI 191 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999998864 677764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=319.41 Aligned_cols=187 Identities=27% Similarity=0.406 Sum_probs=150.6
Q ss_pred CCcEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC----C-
Q 016798 185 NGDVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----I- 256 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~----~- 256 (382)
.+.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 45799999999997542 259999999999999999999999999999999999999999999999999852 1
Q ss_pred CHHHHhcceEEecCCC--ccccccHHHHHcCCCCCCCCCHHH----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCCh
Q 016798 257 RLDSLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (382)
Q Consensus 257 ~~~~~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSg 330 (382)
+...+|+.++|++|+| .+|+.|++||+.++........++ +.+.++..++ |. .........|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~---~~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PE---DYVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Ch---hHhcCChhhCCH
Confidence 3456788999999998 467889999998753211122222 2233333333 11 123345689999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 206 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIM 206 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999998863 677764
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=313.09 Aligned_cols=181 Identities=29% Similarity=0.381 Sum_probs=154.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999975 359999999999999999999999999999999999999999999999999988777777889999
Q ss_pred ecCCCcc-ccccHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITL-FSGTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~l-f~~ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+ +..|++||+.++...... .++.+.++++..++.++.+. ....||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 9999987 567999999875321111 12345666777777655443 3479999999999999999
Q ss_pred c------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 343 Y------QNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 343 l------~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+ .+|+++||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 196 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIV 196 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9 5999999999999999999999999999886 3677764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=312.52 Aligned_cols=187 Identities=36% Similarity=0.512 Sum_probs=154.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~ 258 (382)
+.|+++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+ .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 36899999999975 3599999999999999999999999999999999999863 68999999999864 345
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCC-----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..+|+.++|++|++.+|+.|++||+.++...... .++++.++++.+++.+.+. ..+.....+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 5678899999999999999999999875321111 1234455566666543332 223455689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 200 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVI 200 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999999877778764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=311.23 Aligned_cols=181 Identities=27% Similarity=0.393 Sum_probs=151.2
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~ 266 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 789999999975 359999999999999999999999999999999999999999999999999887766543 45799
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCC--------C----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTK--------I----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~--------~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
|++|++.+|++ |++||+.++..... . .++++.++++.. |++.........||||||
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Ge~ 149 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-----------GLADEADRLAGLLSHGQK 149 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHH
Confidence 99999999987 99999987532100 0 112333344443 344344455689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 197 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVV 197 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999877788774
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=313.72 Aligned_cols=181 Identities=35% Similarity=0.486 Sum_probs=150.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC----------
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---------- 257 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~---------- 257 (382)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 578999999974 36999999999999999999999999999999999999999999999999987543
Q ss_pred ---HHHHhcceEEecCCCcccc-ccHHHHHcCCCC-CCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCC
Q 016798 258 ---LDSLRRHVGLVSQDITLFS-GTVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (382)
Q Consensus 258 ---~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~~-~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~l 328 (382)
...+|+.++|++|++.+|. .|++||+.++.. ..... ++++.++++..++.++... ...+|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADH-----------MPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhc-----------Chhhc
Confidence 2356788999999999885 699999986421 00111 2344555666666554443 44789
Q ss_pred ChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 329 SgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||||++||||++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii 202 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLL 202 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999999999999999999999999999999999999998764 567764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=311.49 Aligned_cols=186 Identities=33% Similarity=0.500 Sum_probs=154.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC-----CceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-----~G~i~~~g~~~~~~--~~~ 259 (382)
.|+++|++|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999974 35999999999999999999999999999999999999997 69999999998643 345
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCCC-----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID-----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~-----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+|+.++|++|++.+|+.|++||+.++....... ++.+.++++..++.+++. ........+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHHH
Confidence 6788999999999999999999998753211111 123444555555544332 3345677899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tili 201 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAI 201 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999876778764
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=317.38 Aligned_cols=182 Identities=25% Similarity=0.365 Sum_probs=151.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HHhc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 263 (382)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5899999999974 3699999999999999999999999999999999999999999999999998776543 3467
Q ss_pred ceEEecCCCccccc-cHHHHHcCCCCC-CCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRDLM-TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~~~-~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
+++|++|++.+|+. |++||+.++... ...+. +.+.+.++..++.+.... ...+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-----------MPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHH
Confidence 89999999999986 999999764210 01122 234445565555444333 34789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii 199 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVV 199 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999999999999999999999999999999854 577764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=311.30 Aligned_cols=182 Identities=31% Similarity=0.429 Sum_probs=148.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC------CCCHHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ------NIRLDS 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~------~~~~~~ 260 (382)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 3789999999975 36999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhcceEEecCCCccccc-cHHHHHcCCCC-CCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 261 LRRHVGLVSQDITLFSG-TVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~-~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
+|++++|++|++.+|+. |++||+.++.. ..... .+++.+.++..++.+++. ....+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-----------RFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHH
Confidence 78899999999999975 99999964210 00111 123344455555544443 344799999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++||||++++|+++||||||++||+++...+.+.|+++.+ ++|+|.
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 196 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVI 196 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999998864 677763
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=307.72 Aligned_cols=183 Identities=32% Similarity=0.439 Sum_probs=153.7
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HHh
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLR 262 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r 262 (382)
++++|+++.|++++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999997532 4699999999999999999999999999999999999999999999999998776543 467
Q ss_pred cceEEecCCCcccc-ccHHHHHcCCCCCC-CCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 263 RHVGLVSQDITLFS-GTVAENIGYRDLMT-KIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~-~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+.++|++|++.+|. .|+.||+.++.... ..+. +++.++++.+++.++++..| .+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 88999999999997 69999998643211 1222 24556666666665555544 68999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||++++|+++||||||++||+++...+.+.|+++.+ ++|+|+
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 197 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI 197 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999999998864 678764
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=316.69 Aligned_cols=184 Identities=33% Similarity=0.477 Sum_probs=156.8
Q ss_pred cEEEEeEEEEeCCC----CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC-HHHH
Q 016798 187 DVKFCNISFKYADN----MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~----~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~ 261 (382)
-|+++|++++|++. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48899999999743 246999999999999999999999999999999999999999999999999987643 3557
Q ss_pred hcceEEecCCCc--cccccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 262 RRHVGLVSQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 262 r~~i~~v~Q~~~--lf~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
|+.++|++|+|. +|..|+.||+.++......+ ++++.++++.+++.++..+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 889999999984 67779999998763211122 345667788888877776654 7999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
++|||||+.+|+++||||||++||+.+...+.+.|+++.+ ++|+|.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~till 200 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIIL 200 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999853 677764
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=300.59 Aligned_cols=169 Identities=35% Similarity=0.474 Sum_probs=141.0
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC--CCHHHHhcceEEecCCC--ccccc
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRHVGLVSQDI--TLFSG 277 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~--~lf~~ 277 (382)
..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.++|++|+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999999852 23346678899999998 47888
Q ss_pred cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeC
Q 016798 278 TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353 (382)
Q Consensus 278 ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDE 353 (382)
|++||+.++......+. +++.++++..++.++.+.. ..+||||||||++||||++++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP-----------THCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987421111222 3455667777776655443 36899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 354 ATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 354 pts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili 182 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVI 182 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999998864 567763
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=314.77 Aligned_cols=189 Identities=30% Similarity=0.429 Sum_probs=157.1
Q ss_pred CCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--C
Q 016798 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--I 256 (382)
Q Consensus 184 ~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~ 256 (382)
....|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 17 ~~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 17 EEIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CCeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 3447999999999964 469999999999999999999999999999999999997 589999999999864 3
Q ss_pred CHHHHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 257 RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 257 ~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
+...+|+.++|++|++.+|..|++||+.++...... + ++++.++++..++.+.+ ++.+.....+||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHH
Confidence 455678899999999999999999999875321111 1 23445566666664433 23345667899999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||||++||||++++|+++||||||++||+.+...+.+.|+++.++.|+|+
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 217 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIII 217 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999999877777764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=312.42 Aligned_cols=188 Identities=26% Similarity=0.420 Sum_probs=150.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 265 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999974 369999999999999999999999999999999999999999999999999988776554 4469
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCC-------C------CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMT-------K------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~-------~------~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
+|++|++.+|+. |++||+.++.... . ...++ .+ ......++++.+ |++........+||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SE--ALDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hH--HHHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 999999999976 9999998752100 0 00000 00 001122333333 4444555667899999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~ 209 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLL 209 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 99999999999999999999999999999999999999998864 567764
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=314.77 Aligned_cols=186 Identities=30% Similarity=0.417 Sum_probs=153.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCC--CCCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQ--NIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~--~~~~~ 259 (382)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999975 3599999999999999999999999999999999999987 4999999999986 44555
Q ss_pred HHhcceEEecCCCccccc-cHHHHHcCCCCCCCC--C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKI--D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~--~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
.+|++++|++|++.+|+. |++||+.++...... + ++++.++++..++.+.+. ........+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHHH
Confidence 678899999999999976 999999864211110 1 234455566665543221 22345568999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 203 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVL 203 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEE
Confidence 9999999999999999999999999999999999999999877778764
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=294.33 Aligned_cols=150 Identities=55% Similarity=0.835 Sum_probs=139.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++....+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 46899999997643369999999999999999999999999999999999999999999999999988877788889999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++|++.+|+.|++||+ ||||||||++||||++.+|+
T Consensus 81 ~~~~~~~~~~t~~e~l--------------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 81 VPQDPFLFSGTIRENI--------------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred EcCCchhccchHHHHh--------------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999997 99999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 117 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~ 150 (171)
T cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIV 150 (171)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999999999877777764
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=320.96 Aligned_cols=181 Identities=31% Similarity=0.432 Sum_probs=148.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 4899999999975 3599999999999999999999999999999999999999999999999998653 345688999
Q ss_pred EecCCCcccc-ccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFS-GTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
|++|++.+|. .|++||+.+.......+.+ ++.++++.+++.+.. ++ ....||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-------~~----~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-------DV----RVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-------cC----chhhCCHHHHHHHHHHHH
Confidence 9999999885 5999999742211112222 233444445443332 32 346899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|+.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~ 190 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 190 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999854 677764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=314.57 Aligned_cols=183 Identities=30% Similarity=0.403 Sum_probs=156.6
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 36999999999975 3599999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEecCCCcccc-ccHHHHHcCCC-CCC-------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 266 GLVSQDITLFS-GTVAENIGYRD-LMT-------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~-~~~-------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+|++|++.+|. .|++||+.++. +.. ...++++.++++..++.++... ....||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 99999999875 59999998652 110 1112355667777777665443 4579999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii 199 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAA 199 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999864 567764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=312.11 Aligned_cols=181 Identities=35% Similarity=0.474 Sum_probs=148.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC--------HH
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--------LD 259 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~--------~~ 259 (382)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..
T Consensus 4 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 889999999974 35999999999999999999999999999999999999999999999999986532 24
Q ss_pred HHhcceEEecCCCcccc-ccHHHHHcCCCC-CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SLRRHVGLVSQDITLFS-GTVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~~-~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.+|+.++|++|++.+|+ .|++||+.++.. ...... +.+.++++..+ ++........+||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~Gq~ 150 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVG-----------LAGKETSYPRRLSGGQQ 150 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CcchhhCChhhCChHHH
Confidence 56788999999999886 599999976421 011122 22333344433 33334455689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~ 199 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVI 199 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999998864 677764
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=317.19 Aligned_cols=185 Identities=29% Similarity=0.395 Sum_probs=149.9
Q ss_pred cEEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC----CHH
Q 016798 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~----~~~ 259 (382)
.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997421 3699999999999999999999999999999999999999999999999998643 245
Q ss_pred HHhcceEEecCCC--ccccccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~r~~i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..++.++|++|+| .+|+.|++||+.++......+.+ .+.++++.+++.+ ........+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHH
Confidence 6677899999998 57888999999864321112222 2344444444421 122344679999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvli 200 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVIL 200 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999853 677764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=320.75 Aligned_cols=180 Identities=26% Similarity=0.412 Sum_probs=152.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999974 469999999999999999999999999999999999999999999999999876 34567889999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+||++.+|+. |++||+.+.......+ .+++.++++..++.++ .......||||||||++||||+
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE-----------QHKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-----------hcCchhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999997532111112 2344455555555443 3444579999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii 187 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIIL 187 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999999977778764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=302.96 Aligned_cols=177 Identities=34% Similarity=0.527 Sum_probs=151.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
++++||+++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ .+++.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 468999999999999999999999999999999999999999999999987543 35778999
Q ss_pred ecCCCccccc-cHHHHHcCCC-CCC---CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRD-LMT---KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~-~~~---~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|+|.+|.. |++||+.++. +.. ...++++.++++..++.+...+.| .+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999975 9999997642 111 112346677888888887776665 58999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+++|+++||||||++||..+...+.+.|+++.+ ++|+|+
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~ 184 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLM 184 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999863 567764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=314.32 Aligned_cols=181 Identities=29% Similarity=0.397 Sum_probs=150.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC--CCCHHHHhcce
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~i 265 (382)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. +.+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 689999999974 36999999999999999999999999999999999999999999999999985 23445678889
Q ss_pred EEecCCCc--cccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~--lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+|++|++. +|..|+.||+.++......+. +++.++++..++.++... ...+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-----------PIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-----------CchhCCHHHHHHHHHH
Confidence 99999986 567789999976421111222 234556666666554432 3478999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||++.+|+++||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~ 191 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVII 191 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999999986 3677764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=308.18 Aligned_cols=182 Identities=30% Similarity=0.407 Sum_probs=148.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH-Hhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 265 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999974 36999999999999999999999999999999999999999999999999998877654 57789
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCC--CHHHHHHHHHHc-ChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKI--DMERVEHTARTA-NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~--~~~~~~~~~~~~-~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
+|++|++.+|+. |++||+.++...... ..+++.++++.. ++.+ ........||||||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHHH
Confidence 999999999975 999999875321110 011222222222 1211 1223457899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 192 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFL 192 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999998754 678764
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=301.90 Aligned_cols=178 Identities=25% Similarity=0.361 Sum_probs=150.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . .++++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHY 77 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEE
Confidence 789999999975 358999999999999999999999999999999999999999999999998752 2 27888999
Q ss_pred ecCCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.++ ..|++||+.+........++++.++++..++.++.+.. ...||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLP-----------FGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCC-----------hhhcCHHHHHHHHHHHHHhcCC
Confidence 99988876 56999999764321123355677888888887654332 2589999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 182 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIA 182 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999864 4577663
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=311.50 Aligned_cols=186 Identities=33% Similarity=0.464 Sum_probs=153.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC--C---CCceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--P---LSGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--~---~~G~i~~~g~~~~~--~~~~ 259 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5899999999975 359999999999999999999999999999999999997 3 58999999999864 3445
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCC-CCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-IDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~-~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+|+.++|++|++.+|+.|++||+.++..... .++ +++.++++..++.+++. ..+.....+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHH
Confidence 67889999999999998999999987532111 122 23444555666544332 2334566899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 209 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVI 209 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999877778764
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=310.43 Aligned_cols=176 Identities=28% Similarity=0.415 Sum_probs=147.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 689999999975 3699999999999999999999999999999999999999999999999988642 346899
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|+ .|++||+.++......+ .+++.++++..++.+.... ...+||||||||++||||+
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999987 59999998642111112 2345556666666544433 4578999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+.+|++|||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii 184 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLL 184 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999874 3678764
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=318.55 Aligned_cols=182 Identities=34% Similarity=0.480 Sum_probs=156.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.++++||+.+|+. ...+|+||||+|++||++|++||||||||||+|+|+|+..|++|+|.++|.+...- ..+.|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999983 23699999999999999999999999999999999999999999999999998764 667899999
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCC----CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTK----IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~----~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
|+||+|.+++. |++||+.|...... ..++++.++++..++.+.. ......||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999998866 99999976422111 2356788888888886522 22357899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC--Cceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH--HTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~--~TvI~ 381 (382)
|+.+|+++||||||+|||+.+...+.+.|+++.++ +|+++
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvli 192 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILL 192 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 99999999999999999999999999999999864 57764
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=314.40 Aligned_cols=182 Identities=30% Similarity=0.470 Sum_probs=151.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC--CCHHHHhcce
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~i 265 (382)
|+++||+++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 6899999999743 359999999999999999999999999999999999999999999999999852 2344678899
Q ss_pred EEecCCC--ccccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+|++|++ .+|+.|++||+.++......+. +++.++++.+++.++.+. ...+|||||+||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-----------PPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999998 4788899999986532111222 345566666666544333 3468999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~ 192 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIII 192 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999864 677764
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=307.98 Aligned_cols=186 Identities=28% Similarity=0.465 Sum_probs=151.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH-Hhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 265 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3789999999974 36999999999999999999999999999999999999999999999999998776544 56789
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCC-CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMT-KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
+|++|++.+|.. |++||+.+..... ..+.++.. ..+.++++.+ |++.........||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 999999999875 9999998643111 11221111 1122334433 4444445566899999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
.+|++|||||||++||+.+...+.+.++++.+ ++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii 192 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLI 192 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999988764 678764
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=311.42 Aligned_cols=186 Identities=32% Similarity=0.438 Sum_probs=155.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~~ 259 (382)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 5899999999974 369999999999999999999999999999999999986 379999999998853 3456
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC---CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI---DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~---~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
.++++++|++|++.+|+.|++||+.++...... .++++.++++.+++.+++.. .......+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHHH
Confidence 678899999999999988999999875321111 12345556677777554432 23456789999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~ 205 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIII 205 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999887778764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=312.64 Aligned_cols=187 Identities=35% Similarity=0.482 Sum_probs=155.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~ 258 (382)
+.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 24 ~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 46999999999974 3599999999999999999999999999999999999984 89999999999864 345
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..+|+.++|++|++.+|+.|++||+.++...... . ++++.++++.+++.+.+. +.++..+..||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHHH
Confidence 5678899999999999988999999865211111 1 233555666666644332 234566789999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|.
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiii 222 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVI 222 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEE
Confidence 999999999999999999999999999999999999999877777763
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=310.70 Aligned_cols=186 Identities=31% Similarity=0.425 Sum_probs=154.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~~ 259 (382)
-|+++|++|+|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+. +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4899999999974 3699999999999999999999999999999999999763 489999999998765 445
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
..++.++|++|++.+|+.|++||+.++...... + ++.+.++++.+++.+. +.+.+...+.+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHHH
Confidence 677889999999999999999999875321111 1 2234455555554332 223456677899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii 203 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVII 203 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEE
Confidence 99999999999999999999999999999999999999877778764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=311.97 Aligned_cols=186 Identities=31% Similarity=0.406 Sum_probs=152.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~~ 259 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5899999999974 369999999999999999999999999999999999864 789999999999864 3344
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.++++++|++|++.+|++|++||+.++...... .++.+.++++..++.+.+ .........+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHHH
Confidence 678889999999999999999999864211111 123344555555543211 12234556899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 218 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIII 218 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999877778764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=310.94 Aligned_cols=186 Identities=31% Similarity=0.447 Sum_probs=152.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCCC--HH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIR--LD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~~--~~ 259 (382)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 6999999999974 3599999999999999999999999999999999999985 7999999999986532 34
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
.+|+.++|++|++.+|+.|++||+.++......+. +++.++++.+++.+++ ..........||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHHH
Confidence 56788999999999999999999986421111222 2344556665553221 122344567999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiii 208 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVI 208 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEE
Confidence 9999999999999999999999999999999999999877778764
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=324.73 Aligned_cols=181 Identities=32% Similarity=0.475 Sum_probs=154.3
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++.+
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999974 358999999999999999999999999999999999999999999999999987654 47789
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+||+|++.+|+. |++||+.|+......+ .+++.++++..++.++.++.| .+||||||||+||||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999976 9999999864211222 234556677777766655544 689999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||+++|++|+||||||+||..+...+.+.|+++.+ +.|+|.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~ 205 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999988887753 567663
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=308.87 Aligned_cols=187 Identities=30% Similarity=0.456 Sum_probs=154.1
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC--C---CCceEEEcCEeCCCC--CH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--P---LSGCILVDDHDVQNI--RL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--~---~~G~i~~~g~~~~~~--~~ 258 (382)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +.
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 46899999999974 369999999999999999999999999999999999986 4 689999999998643 34
Q ss_pred HHHhcceEEecCCCcccc-ccHHHHHcCCCCCCC-CC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 259 DSLRRHVGLVSQDITLFS-GTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~-~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
..+|+.++|++|++.+|. .|++||+.++..... .+ ++++.++++..++.+++.. .......+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHHH
Confidence 467889999999999997 599999976421111 11 2345566666666544322 2234568999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii 202 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIII 202 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEE
Confidence 9999999999999999999999999999999999999999987778764
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=285.53 Aligned_cols=175 Identities=30% Similarity=0.480 Sum_probs=150.8
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEe
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
+++++- |...+.++|+|+||++.+||+++|+||||||||||+|.++-+.+|++|++++.|.+++.++++.+|++|+||
T Consensus 5 e~kq~~--y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 5 ELKQVG--YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred HHHHHH--hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 344543 433445799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccHHHHHcCCCC--CCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 269 SQDITLFSGTVAENIGYRDL--MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 269 ~Q~~~lf~~ti~eNi~~~~~--~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
.|.|.||.+||.||+.|--. ....+.....+.++.+++.+.+ +..+..+||||||||+||+|-|---|
T Consensus 83 ~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~lSGGE~QriAliR~Lq~~P 152 (223)
T COG4619 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITELSGGEKQRIALIRNLQFMP 152 (223)
T ss_pred HcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhhccchHHHHHHHHHHhhcCC
Confidence 99999999999999986311 1123455556666666665544 45567899999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
+||+||||||+||..+.+.|.+.|.++..
T Consensus 153 ~ILLLDE~TsALD~~nkr~ie~mi~~~v~ 181 (223)
T COG4619 153 KILLLDEITSALDESNKRNIEEMIHRYVR 181 (223)
T ss_pred ceEEecCchhhcChhhHHHHHHHHHHHhh
Confidence 99999999999999999999999988873
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=313.00 Aligned_cols=186 Identities=34% Similarity=0.476 Sum_probs=152.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~~ 259 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 24 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 24 VFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred EEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 5999999999975 359999999999999999999999999999999999997 699999999999853 3455
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCCCH-----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM-----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~-----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+++.++|++|++.+|..|++||+.++......++ +.+.++++..++.+ ++...+...+..|||||||
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHHH
Confidence 67889999999999998999999986421111111 12233344443321 2233345567899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 221 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIII 221 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999999987777764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=313.90 Aligned_cols=187 Identities=31% Similarity=0.467 Sum_probs=155.2
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~ 258 (382)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+ .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 35999999999975 369999999999999999999999999999999999997 689999999999864 345
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCC---CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI---DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~---~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
..+++.++|++|++.+|+.|++||+.++...... .++++.++++..++.+.+. ..+.....+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHHH
Confidence 5678899999999999988999999764211111 2345566666666543322 12345568999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||++++|++|||||||++||..+.+.+.+.|+++.+++|+|+
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii 234 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVI 234 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999977777764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=311.48 Aligned_cols=184 Identities=32% Similarity=0.441 Sum_probs=151.2
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC---------
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI--------- 256 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~--------- 256 (382)
+.|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 46999999999975 3599999999999999999999999999999999999999999999999988542
Q ss_pred ----CHHHHhcceEEecCCCccccc-cHHHHHcCCCC-CCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCC
Q 016798 257 ----RLDSLRRHVGLVSQDITLFSG-TVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGS 326 (382)
Q Consensus 257 ----~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~-~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~ 326 (382)
....+++.++|++|++.+|+. |++||+.++.. ....+ .+++.++++..++.++. ......
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~ 151 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYPV 151 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcc
Confidence 134667889999999999975 99999976320 00112 23344555555554432 134567
Q ss_pred CCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 327 ~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
.||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiii 207 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVV 207 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999999999999864 677764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=310.22 Aligned_cols=181 Identities=30% Similarity=0.435 Sum_probs=153.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 688999999975 369999999999999999999999999999999999999999999999999988887777888999
Q ss_pred ecCCCcc-ccccHHHHHcCCCC-CC-------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 268 VSQDITL-FSGTVAENIGYRDL-MT-------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 268 v~Q~~~l-f~~ti~eNi~~~~~-~~-------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
++|++.+ +..|++||+.++.. .. ....+++.++++.+++.++... ....||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHH
Confidence 9999965 46799999987531 00 0112345566666666554433 457899999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||++.+|+++||||||++||+.+...+.+.|+++.+ +.|+|+
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 192 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVA 192 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999864 567664
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=309.96 Aligned_cols=186 Identities=34% Similarity=0.487 Sum_probs=152.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC---CCC--CCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL---YDP--LSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~---~~~--~~G~i~~~g~~~~~~--~~~ 259 (382)
.|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5889999999975 3599999999999999999999999999999999997 454 589999999998754 345
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+|++++|++|++.+|+.|++||+.++...... .++++.++++.+++.+++ ++.+.....+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHHH
Confidence 678889999999999988999999864211111 123345555555554332 22344567899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 200 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVI 200 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999999999877778764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=308.32 Aligned_cols=186 Identities=35% Similarity=0.475 Sum_probs=154.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCC-CCCHHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQ-NIRLDS 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~-~~~~~~ 260 (382)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4889999999974 3699999999999999999999999999999999999986 5999999999985 345667
Q ss_pred HhcceEEecCCCccccccHHHHHcCCCCCCCCC-----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKID-----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~-----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
+|+.++|++|++.+|+.|++||+.++....... ++++.++++.+++.+.+ ...+.....+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHH
Confidence 788999999999999999999998653211111 12344555566654433 223445567999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~ 199 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVI 199 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999999999999999999999999977777764
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=293.65 Aligned_cols=151 Identities=48% Similarity=0.689 Sum_probs=137.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC--HHHHhcce
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--LDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~--~~~~r~~i 265 (382)
|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+++++
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 468999999975 36999999999999999999999999999999999999999999999999998775 56678899
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+|++|+|.+|.. |++||+.+. ||||||||++||||+++
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~-----------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG-----------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEEecCCccCCCCCHHHheeec-----------------------------------------CCHHHHHHHHHHHHHHC
Confidence 999999998865 999998542 99999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|+++||||||++||+.+...+.+.|+++.+ ++|+|.
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii 156 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVL 156 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999875 477763
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=308.51 Aligned_cols=186 Identities=32% Similarity=0.445 Sum_probs=152.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CC---CCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DP---LSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~---~~G~i~~~g~~~~~~--~~~ 259 (382)
-|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|++ +| ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999974 36999999999999999999999999999999999995 36 489999999998643 344
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+|+.++|++|++.+|+.|++||+.++...... .++++.++++.+++.+.+. +.......+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHHH
Confidence 678889999999999999999999864211111 1233445566665543322 2344566899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 202 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLL 202 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEE
Confidence 99999999999999999999999999999999999999877777764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=308.21 Aligned_cols=186 Identities=32% Similarity=0.445 Sum_probs=152.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~~ 259 (382)
.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999974 369999999999999999999999999999999999997 479999999999854 3445
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+|+.++|++|++.+|+.|++||+.++...... . ++++.++++..++++.. .........+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHHH
Confidence 678889999999999999999999865321111 1 12344555555553211 11234456899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 201 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIM 201 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999999999999999999877777764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=303.63 Aligned_cols=177 Identities=35% Similarity=0.519 Sum_probs=151.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||+++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL--P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc--c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 6899999999742 2 39999999999999999999999999999999999999999999999876543 2568999
Q ss_pred ecCCCccccc-cHHHHHcCCC-CC---CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRD-LM---TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~-~~---~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|.+ |++||+.++. +. ...+++++.++++.+++.++++..| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999976 9999998642 11 1112456778888888888777765 58999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii 185 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLM 185 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999998754 667764
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=321.60 Aligned_cols=181 Identities=30% Similarity=0.417 Sum_probs=149.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.++
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999975 35999999999999999999999999999999999999999999999999987644 46788999
Q ss_pred EecCCCccc-cccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLF-SGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
|+||++.+| ..|++||+.+.......+.+ .+.++++.+++ ++..++. ..+||||||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~~----~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADAR----VSDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chhhCCC----hhhCCHHHHHHHHHHHH
Confidence 999999987 45999999753211112222 23334444443 3333443 36899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|+.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tili 227 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 227 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999864 678774
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=325.96 Aligned_cols=167 Identities=33% Similarity=0.518 Sum_probs=143.4
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH----hcceEEecCCCccccc-c
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRHVGLVSQDITLFSG-T 278 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~-t 278 (382)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ +++++||+|++.+|+. |
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999988776543 4579999999999965 9
Q ss_pred HHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCc
Q 016798 279 VAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (382)
Q Consensus 279 i~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEp 354 (382)
++||+.++......+ .+++.++++.+++.++..+.| .+||||||||++|||||+.+|++||||||
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999998753211112 245566777777776666554 68999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 355 TSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 355 ts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
|++||+.+.+.+++.|+++. .++|+|+
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIi 220 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVF 220 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999999999999999875 3678764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=311.26 Aligned_cols=184 Identities=33% Similarity=0.423 Sum_probs=148.6
Q ss_pred EEEEeEEEEeCCC-------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH
Q 016798 188 VKFCNISFKYADN-------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 188 i~~~~v~f~y~~~-------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 260 (382)
|+++||+|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 346999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HhcceEEecCCCc--cc-cccHHHHHcCCCC-CCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCC
Q 016798 261 ---LRRHVGLVSQDIT--LF-SGTVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (382)
Q Consensus 261 ---~r~~i~~v~Q~~~--lf-~~ti~eNi~~~~~-~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lS 329 (382)
+|+.++|++|++. ++ ..|++||+.+... ....+ .+++.++++..++.+ .........||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 5778999999983 44 3699999964311 00111 233444555544421 22344568999
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||||++||||++.+|++|||||||++||+.++..+.+.|+++.+ ++|+|+
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii 206 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLF 206 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 9999999999999999999999999999999999999999999864 678764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=305.90 Aligned_cols=179 Identities=38% Similarity=0.525 Sum_probs=153.2
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 468999999975 369999999999999999999999999999999999999999999999999986654 3678999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|.+ |++||+.++......+ ++++..+++..++.+++...| ..||||||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999965 9999997542111111 345566777777777666554 69999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii 186 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999864 678774
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=308.85 Aligned_cols=186 Identities=30% Similarity=0.443 Sum_probs=153.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~~ 259 (382)
-|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4889999999974 3699999999999999999999999999999999999984 899999999988653 334
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+++.++|++|++.+|+.|++||+.++...... .++++.++++..++.+.+. ........+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHHH
Confidence 567889999999999999999999864211111 1233455666666544332 2245567899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili 200 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVI 200 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999999999999999999999999999999999877778764
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=299.76 Aligned_cols=163 Identities=26% Similarity=0.356 Sum_probs=141.3
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC---CCCceEEEcCEeCCCCCHHHH
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 261 (382)
.+.++||+|.|+.+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999853 4579999999999999999999999999999999999999 89999999999987654 356
Q ss_pred hcceEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
++.++|++|++.+|.. |++||+.++.. .. ..+....||||||||++|||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~--------~~----------------------~~~~~~~LS~Ge~qrl~lar 131 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR--------CK----------------------GNEFVRGISGGERKRVSIAE 131 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh--------hc----------------------cccchhhCCHHHHHHHHHHH
Confidence 7789999999998875 99999975421 00 12344689999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
|++++|+++||||||++||+.+++.+.+.|+++.+ +.|+|
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~i 173 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTF 173 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999864 35544
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=291.65 Aligned_cols=148 Identities=37% Similarity=0.605 Sum_probs=135.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4689999999753 5999999999999999999999999999999999999999999999999987665 567889999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.+|.+ |++||+. ||||||||++||||++.+|
T Consensus 78 ~~q~~~~~~~~tv~~~~~-------------------------------------------LS~G~~qrv~laral~~~p 114 (173)
T cd03230 78 LPEEPSLYENLTVRENLK-------------------------------------------LSGGMKQRLALAQALLHDP 114 (173)
T ss_pred EecCCccccCCcHHHHhh-------------------------------------------cCHHHHHHHHHHHHHHcCC
Confidence 9999999876 9999973 9999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+++||||||++||+.+.+.+.+.|+++.+ +.|+|+
T Consensus 115 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii 150 (173)
T cd03230 115 ELLILDEPTSGLDPESRREFWELLRELKKEGKTILL 150 (173)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999864 467663
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=311.24 Aligned_cols=187 Identities=32% Similarity=0.467 Sum_probs=155.6
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~ 258 (382)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+ .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 36999999999974 3599999999999999999999999999999999999985 48999999999854 344
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCC-CC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~-~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..+++.++|++|++.+|+.|++||+.++..... .+ ++.+.++++.+++.+++.. ........||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 567889999999999999999999976421110 11 2345566777776544332 23456689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 204 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAI 204 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999877778764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=310.34 Aligned_cols=185 Identities=31% Similarity=0.433 Sum_probs=151.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCCCC--HHH
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNIR--LDS 260 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~~~--~~~ 260 (382)
-+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+.+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 468999999974 369999999999999999999999999999999999986 47999999999886543 235
Q ss_pred HhcceEEecCCCccccccHHHHHcCCCCCCCC------CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKI------DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~------~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
+|+.++|++|++.+|+.|++||+.++....+. .++++.++++..++.+++ .+.+...+..|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHH
Confidence 67889999999999999999999865211111 123445566666654432 12344567899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 203 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIV 203 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999999999877788774
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=304.74 Aligned_cols=179 Identities=36% Similarity=0.508 Sum_probs=150.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ +++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 468999999975 369999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+||++.+|++ |++||+.+.......+ .+++.++++..++.++.+. ...+|||||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDR-----------YPNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999998653211111 2344556666666555443 3468999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+++|+++||||||++||..+++.+.+.|++..+ ++|+|+
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli 186 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF 186 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999998765 578774
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=319.52 Aligned_cols=184 Identities=26% Similarity=0.336 Sum_probs=150.6
Q ss_pred cEEEEeEEEEeCCC-----------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC
Q 016798 187 DVKFCNISFKYADN-----------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (382)
Q Consensus 187 ~i~~~~v~f~y~~~-----------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~ 255 (382)
-|+++||+++|+.+ ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 58999999999631 2458999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH---HhcceEEecCCC--cccc-ccHHHHHcCCCCC--CCCCH----HHHHHHHHHcChH-HHHHhCCCCcccccC
Q 016798 256 IRLDS---LRRHVGLVSQDI--TLFS-GTVAENIGYRDLM--TKIDM----ERVEHTARTANAD-EFVRTLPQGYNTHIG 322 (382)
Q Consensus 256 ~~~~~---~r~~i~~v~Q~~--~lf~-~ti~eNi~~~~~~--~~~~~----~~~~~~~~~~~l~-~~i~~lp~Gldt~vg 322 (382)
++..+ +|++++||+|+| .+|+ .|+.||+.+.... ...+. +.+.++++.+++. +.. .
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~-----------~ 156 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI-----------N 156 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh-----------c
Confidence 87543 577899999999 4774 6999998642110 01232 2344556666652 233 3
Q ss_pred CCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 323 e~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
....+||||||||++|||||+.+|++||+||||++||..++..+.+.|+++.+ +.|+|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~ 217 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIF 217 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 34579999999999999999999999999999999999999999999999864 567764
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=309.61 Aligned_cols=187 Identities=35% Similarity=0.450 Sum_probs=154.7
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~ 258 (382)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 36999999999975 3599999999999999999999999999999999999863 58999999999864 334
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCC---CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI---DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~---~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
..+|+.++|++|++.+|+.|+.||+.++...... .++.+.++++.+++.+++.. ........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 4668899999999999988999999875321111 12344556666666544321 2345568999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii 215 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIM 215 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999987777764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=306.58 Aligned_cols=186 Identities=33% Similarity=0.468 Sum_probs=153.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~~ 259 (382)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999974 3599999999999999999999999999999999999975 799999999998653 334
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+++.++|++|++.+|+.|++||+.++...... + .+++.++++.+++.+.+. .........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHHH
Confidence 667889999999999999999999865321111 1 234455666666543322 2234456899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiii 201 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVI 201 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEE
Confidence 99999999999999999999999999999999999999877777764
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=311.57 Aligned_cols=187 Identities=28% Similarity=0.387 Sum_probs=154.0
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCCC-HH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIR-LD 259 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~~-~~ 259 (382)
..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+.+ ..
T Consensus 20 ~~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 20 PAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred cEEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 36899999999974 3699999999999999999999999999999999999986 6999999999987653 34
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCC-CCCHHHH----HHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMT-KIDMERV----EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~-~~~~~~~----~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.++++++|++|++.+|+.|++||+.++.... ..+.++. .+.++..++.++ +++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHHH
Confidence 6788999999999999999999998653111 1233332 233444444322 223455667899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++.+|+++||||||++||..+.+.+.+.|+++.+++|+|+
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii 217 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVII 217 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999877777764
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=308.63 Aligned_cols=186 Identities=32% Similarity=0.465 Sum_probs=152.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~~ 259 (382)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 58999999999753 599999999999999999999999999999999999974 69999999999853 3455
Q ss_pred HHhcceEEecCCCcccc-ccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.+|+.++|++|++.+|. .|++||+.++...... + ++.+.++++.+++.+++. ........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 67889999999999997 5999999754211111 1 234455566666543321 233455689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii 202 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVI 202 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999999877778764
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=306.75 Aligned_cols=186 Identities=33% Similarity=0.471 Sum_probs=155.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~~--~~~ 259 (382)
.|+++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999974 359999999999999999999999999999999999874 4899999999998653 455
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCC-CC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~-~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+++.++|+||++.+|+.|++||+.++..... .+ .+++.++++.+++.+++.. .+...+..|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHH
Confidence 67889999999999999999999986521111 11 2345566777777665532 134557899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|++++|||||++||..+...+.+.|+++.+++|+|+
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii 200 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVI 200 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999999999877778764
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=305.83 Aligned_cols=179 Identities=37% Similarity=0.534 Sum_probs=153.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE---eCCCCCHHHHhc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH---DVQNIRLDSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~---~~~~~~~~~~r~ 263 (382)
.|+++++++.|+.. .+++|||++|+.||.+|+.||||||||||+++|+|+..|++|.|.+||. |.++. ..-.+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhc
Confidence 47889999999764 6899999999999999999999999999999999999999999999999 55543 23346
Q ss_pred ceEEecCCCcccc-ccHHHHHcCCCCCC------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 264 HVGLVSQDITLFS-GTVAENIGYRDLMT------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 264 ~i~~v~Q~~~lf~-~ti~eNi~~~~~~~------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+||+|+|+.-+|. .||++||+||.... .....++.+.++.+++..+-++.| .+||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 7999999999985 59999999996321 123457777888999988888877 89999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
||||||..+|++|+||||+++||.+-.+.+.+-|+++.. +.|++
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttv 192 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTV 192 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEE
Confidence 999999999999999999999999999999888887653 34544
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=301.35 Aligned_cols=177 Identities=25% Similarity=0.381 Sum_probs=150.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 468999999975 36999999999999999999999999999999999999999999999999875321 357999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.+|. .|++||+.++......+++++.++++..++.++.+. ...+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 999999886 599999975421112345677777888877765544 34789999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++++|||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii 179 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVIL 179 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999998864 567764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=305.59 Aligned_cols=182 Identities=25% Similarity=0.332 Sum_probs=145.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CCCCceEEEcCEeCCCCCHHHH-hcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDSL-RRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~-r~~ 264 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 478999999974 35999999999999999999999999999999999994 7999999999999988776554 445
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCC-C------CCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCC-CCChH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLM-T------KID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGS-SLSGG 331 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~-~------~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~-~lSgG 331 (382)
++|++|++.+|++ |++||+.+.... . ..+ .+++.++++..++.+.. ...... .||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~~LS~G 148 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF----------LNRSVNEGFSGG 148 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh----------cccccccCcCHH
Confidence 9999999999976 899998653110 0 011 12334444444443211 112223 59999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~ 199 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLI 199 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEE
Confidence 99999999999999999999999999999999999999999864 577764
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=302.72 Aligned_cols=185 Identities=29% Similarity=0.472 Sum_probs=145.8
Q ss_pred EEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC---CCCceEEEcCEeCCCCCHHHHh
Q 016798 188 VKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 188 i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~r 262 (382)
+.++||+|+|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5689999999865 3679999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cceEEecCCCccccc-cHHHHHcCCCCCC--CCCHHHHHHHHHHcChHH-HHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 263 RHVGLVSQDITLFSG-TVAENIGYRDLMT--KIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~-~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
+.++|++|++.+|++ |++||+.++.... ....++.... ...+ .++.+ +++.........|||||+||++|
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK----RVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHH----HHHHHHHHhh--cchhhhcccccCcCHHHHHHHHH
Confidence 889999999999987 9999998642110 0001111000 0111 12211 23323334567999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii 198 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVIL 198 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999999998754 567763
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=312.10 Aligned_cols=186 Identities=33% Similarity=0.470 Sum_probs=155.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~~--~~~ 259 (382)
.|+++||+++|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++... +..
T Consensus 45 ~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~ 122 (305)
T PRK14264 45 KLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV 122 (305)
T ss_pred eEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999975 369999999999999999999999999999999999986 6899999999998643 355
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCC-----------------CCCHHHHHHHHHHcChHHHHHhCCCCcccccC
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMT-----------------KIDMERVEHTARTANADEFVRTLPQGYNTHIG 322 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vg 322 (382)
.+|+.++|++|++.+|+.|++||+.++.... ...++++.++++.+++.+ ++++.+.
T Consensus 123 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~ 195 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDRLD 195 (305)
T ss_pred HHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHHhc
Confidence 6788999999999999999999998652110 001233445555555432 3344556
Q ss_pred CCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 323 e~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
....+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiii 254 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVV 254 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 67789999999999999999999999999999999999999999999999987777764
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=309.65 Aligned_cols=187 Identities=33% Similarity=0.457 Sum_probs=152.0
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-----CCCceEEEcCEeCCCC--CH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNI--RL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----~~~G~i~~~g~~~~~~--~~ 258 (382)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 38 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 35899999999975 359999999999999999999999999999999999864 4999999999998643 23
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..+|+.++|++|++.+|+.|++||+.++...... + .+++.++++..++.+.+. .........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHHHH
Confidence 3567889999999999988999999875321111 1 223445555555432221 123445689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIi 236 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMI 236 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999999877777764
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=297.43 Aligned_cols=179 Identities=22% Similarity=0.283 Sum_probs=147.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++|++++|++ +++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 5899999999975 3599999999999999999999999999999999999999999999999988652 3456799
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCC-CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKI-DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~-~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|++|++.+|.. |++||+.+....... .++.+.+.++..++.+.. + .....||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE-------D----TLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhc-------c----CChhhCCHHHHHHHHHHHHHhc
Confidence 99999999876 999999754211111 233445555555554332 2 2347899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+|+++||||||++||+++.+.+.+.|+++.+ ++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 192 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALV 192 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999988654 567664
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=304.87 Aligned_cols=186 Identities=31% Similarity=0.378 Sum_probs=156.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCC--CHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~~ 259 (382)
.+.+++++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 5889999999964 3699999999999999999999999999999999999986 799999999998643 344
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCC---CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~---~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
.+++.++|++|++.+|..|++||+.++..... ...+++.++++.+++.+.+.. ..++...+|||||+||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 66788999999999999999999987532111 113466777888777555432 23456789999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~ 203 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIAL 203 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999877777763
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=306.69 Aligned_cols=184 Identities=27% Similarity=0.356 Sum_probs=149.6
Q ss_pred cEEEEeEEEEeCCC-------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH
Q 016798 187 DVKFCNISFKYADN-------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~-------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~ 259 (382)
-|+++||+++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 23699999999999999999999999999999999999999999999999998765555
Q ss_pred HHhcceEEecCCCc--cccc-cHHHHHcCCCCC-CCCC----HHHHHHHHHHcChH-HHHHhCCCCcccccCCCCCCCCh
Q 016798 260 SLRRHVGLVSQDIT--LFSG-TVAENIGYRDLM-TKID----MERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSG 330 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~--lf~~-ti~eNi~~~~~~-~~~~----~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G~~lSg 330 (382)
..++.++|++|++. +++. |+.+|+.+.... ...+ .+++.++++.+++. +.... ...+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY-----------YPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhc-----------CchhcCH
Confidence 56678999999985 4444 899998642110 0111 24556677777773 33322 2368999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii 205 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 999999999999999999999999999999999999999999863 677764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=305.90 Aligned_cols=182 Identities=31% Similarity=0.404 Sum_probs=151.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEeCCCC-----CH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNI-----RL 258 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~~~~~-----~~ 258 (382)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999974 36999999999999999999999999999999999999986 49999999988653 23
Q ss_pred HHHhcceEEecCCCccccc-cHHHHHcCCCCCC------------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCC
Q 016798 259 DSLRRHVGLVSQDITLFSG-TVAENIGYRDLMT------------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRG 325 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~------------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G 325 (382)
..+++.++|++|++.+|.. |++||+.++.... ....+++.++++..++.++.+. ..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 4567889999999998874 9999998653100 0112345566666666554433 44
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
.+||||||||++||||++.+|++|||||||++||..+.+.+.+.|+++.+ ++|+|.
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii 208 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVV 208 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 78999999999999999999999999999999999999999999999863 577764
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=285.88 Aligned_cols=143 Identities=36% Similarity=0.482 Sum_probs=130.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4689999999743 46999999999999999999999999999999999999999999999873 57999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++|++.+++.|++||+.++ ....||||||||++||||++++|+
T Consensus 69 ~~q~~~~~~~tv~~nl~~~-------------------------------------~~~~LS~G~~~rv~laral~~~p~ 111 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP-------------------------------------WDDVLSGGEQQRLAFARLLLHKPK 111 (166)
T ss_pred ECCCCccccccHHHHhhcc-------------------------------------CCCCCCHHHHHHHHHHHHHHcCCC
Confidence 9999999989999999652 237899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||||++||+++.+.+.+.++++ ++|+|+
T Consensus 112 ~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiii 143 (166)
T cd03223 112 FVFLDEATSALDEESEDRLYQLLKEL--GITVIS 143 (166)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHh--CCEEEE
Confidence 99999999999999999999999987 467663
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=306.81 Aligned_cols=181 Identities=27% Similarity=0.300 Sum_probs=151.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC--------CceEEEcCEeCCCCCHH
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL--------SGCILVDDHDVQNIRLD 259 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~--------~G~i~~~g~~~~~~~~~ 259 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 689999999965 36999999999999999999999999999999999999998 99999999999887777
Q ss_pred HHhcceEEecCCCc-cccccHHHHHcCCCCCC----C-CC---HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCCh
Q 016798 260 SLRRHVGLVSQDIT-LFSGTVAENIGYRDLMT----K-ID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~-lf~~ti~eNi~~~~~~~----~-~~---~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSg 330 (382)
.+++.++|++|++. +|..|++||+.++.... . .. .+.+.++++..++ ++.++....+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----------TALVGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----------HhhhcCCcccCCH
Confidence 78888999999986 57789999998753110 0 11 1233444555544 4444556689999
Q ss_pred HHHHHHHHHHHcc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 331 GQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||++||||++ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii 210 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLA 210 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999 59999999999999999999999999998864 577764
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=305.93 Aligned_cols=188 Identities=31% Similarity=0.438 Sum_probs=155.5
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCC----C
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQ----N 255 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~----~ 255 (382)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++. .
T Consensus 14 ~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 457999999999975 3699999999999999999999999999999999999975 7999999998774 2
Q ss_pred CCHHHHhcceEEecCCCccccccHHHHHcCCCCCCC-----CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCCh
Q 016798 256 IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-----IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (382)
Q Consensus 256 ~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~-----~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSg 330 (382)
.+...+++.++|++|++.+|.+|++||+.++..... ..++++.++++.+++.+. +.+.+......|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE-------VKDRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchh-------hhHHHhCCcccCCH
Confidence 344567888999999999999999999986521111 113455566666665432 22344556789999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+||++||||++++|+++||||||++||..+...+.+.|+++.+++|+|+
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiii 215 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILI 215 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999877777764
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=313.36 Aligned_cols=172 Identities=31% Similarity=0.427 Sum_probs=143.0
Q ss_pred EeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccc
Q 016798 196 KYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (382)
Q Consensus 196 ~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 275 (382)
+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|++|++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4643 369999999999999999999999999999999999999999999999999875 3456788999999999999
Q ss_pred cc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEE
Q 016798 276 SG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350 (382)
Q Consensus 276 ~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ili 350 (382)
+. |++||+.+.......+ ++++.++++.+++.+..+ ....+||||||||++|||||+.+|++||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76 9999997642111112 234556666666654433 2347899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 351 LDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~ 179 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILL 179 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999864 577764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=297.89 Aligned_cols=184 Identities=30% Similarity=0.393 Sum_probs=145.4
Q ss_pred EEEEeEEEEeCCC-----CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEc--CE--eCCCCCH
Q 016798 188 VKFCNISFKYADN-----MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD--DH--DVQNIRL 258 (382)
Q Consensus 188 i~~~~v~f~y~~~-----~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~--g~--~~~~~~~ 258 (382)
|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6899999999631 2368999999999999999999999999999999999999999999998 42 5555554
Q ss_pred HH---H-hcceEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCC
Q 016798 259 DS---L-RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (382)
Q Consensus 259 ~~---~-r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lS 329 (382)
.. + ++.++|++|++.+|+. |++||+.+.......+ .+++.++++..++.+... ...+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW----------HLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh----------hCCcccCC
Confidence 43 3 4579999999998865 9999997531111112 233344455554433221 22467899
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~ 204 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIG 204 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999999999864 677764
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=303.65 Aligned_cols=186 Identities=33% Similarity=0.440 Sum_probs=151.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC--C---CCceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--P---LSGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--~---~~G~i~~~g~~~~~--~~~~ 259 (382)
-|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999974 369999999999999999999999999999999999975 4 58999999999864 2344
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
.+++.++|++|++.+|+.|++||+.++...... . ++++.++++.+++.+.+ .........+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHHH
Confidence 667889999999999999999999864211111 1 22334445555543222 22344556899999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++.+|+++||||||++||+.+...+.+.|+++.++.|+|+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 202 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIIL 202 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999877777764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=303.41 Aligned_cols=187 Identities=31% Similarity=0.444 Sum_probs=154.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC-----CceEEEcCEeCCC--CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQN--IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-----~G~i~~~g~~~~~--~~~ 258 (382)
+.|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999974 35899999999999999999999999999999999999985 8999999998753 344
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
..+|+.++|++|++.+|+.|++||+.++...... + ++.+.++++..++.+++.. ..+.....||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 5678889999999999999999999764211011 1 2345566777766544432 23456689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
||++||||++++|+++||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiii 206 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI 206 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999864 3677764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=299.66 Aligned_cols=178 Identities=34% Similarity=0.519 Sum_probs=151.7
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999974 27999999999999999999999999999999999999999999999999877554 3678999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~~----~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|++.+|. .|++||+.++...... .++++.++++.+++.+++.+.| .+||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999995 6999999864321111 1234566777777777665544 68999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+++|++++|||||++||..+.+.+.+.|+++.+ ++|+|.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili 185 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLH 185 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999998754 677764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=312.32 Aligned_cols=184 Identities=27% Similarity=0.326 Sum_probs=149.9
Q ss_pred cEEEEeEEEEeCCC--------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH
Q 016798 187 DVKFCNISFKYADN--------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL 258 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~ 258 (382)
-|+++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2368999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhcceEEecCCCc--cccc-cHHHHHcCC-----CCCCCCCHHHHHHHHHHcChHH-HHHhCCCCcccccCCCCC
Q 016798 259 D---SLRRHVGLVSQDIT--LFSG-TVAENIGYR-----DLMTKIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGS 326 (382)
Q Consensus 259 ~---~~r~~i~~v~Q~~~--lf~~-ti~eNi~~~-----~~~~~~~~~~~~~~~~~~~l~~-~i~~lp~Gldt~vge~G~ 326 (382)
. .+|++|+||+|+|. +++. |+.+|+... ........+++.++++.+++.+ ..+. ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~p~ 153 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDR-----------YPH 153 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcC-----------CCc
Confidence 3 46788999999994 6654 899988531 1000011234566677776642 2222 347
Q ss_pred CCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 327 ~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~ 210 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVF 210 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 8999999999999999999999999999999999999999999998864 667764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=302.92 Aligned_cols=186 Identities=33% Similarity=0.453 Sum_probs=149.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC-----CceEEEcCEeCCC--CCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQN--IRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-----~G~i~~~g~~~~~--~~~~ 259 (382)
-++++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 3789999999974 36999999999999999999999999999999999999874 8999999999865 3345
Q ss_pred HHhcceEEecCCCccccc-cHHHHHcCCCCCCCC-CHHH----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKI-DMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~-~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.+|+.++|++|++.+|.. |++||+.++...... .+++ ..+.++..++.+.+ ++.++ ....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~----~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLK----TPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhc----CCcccCCHHHH
Confidence 678889999999999975 999999764211111 1222 22233334433222 22233 34578999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 202 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIII 202 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999999877777764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=315.99 Aligned_cols=176 Identities=28% Similarity=0.418 Sum_probs=150.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC----CHHHHhc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLDSLRR 263 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~r~ 263 (382)
|++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +....++
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 566 999999642 23 89999999999999999999999999999999999999999999998653 2345678
Q ss_pred ceEEecCCCcccc-ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 264 HVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 264 ~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+++|++|++.+|+ .|++||+.++.. ....+++.++++..++.++.++.| .+||||||||++|||||
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL 143 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMA--KSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRAL 143 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhh--hhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999999996 499999988643 224566777888887766665544 79999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~ 184 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILY 184 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999998864 567763
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=290.43 Aligned_cols=175 Identities=20% Similarity=0.307 Sum_probs=145.7
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ +.++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.. ++.++|
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 689999999964 3344 599999999999999999999999999999999999999999999886532 346999
Q ss_pred ecCCCcc-ccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 268 VSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 268 v~Q~~~l-f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
++|++.+ |..|++||+.+...... .++++.++++.+++.++.. ..+.+||||||||++||||++++|
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYN-SAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcc-cHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999865 57799999987542211 3456667777777765543 345799999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRL-LGHHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~-~~~~TvI~ 381 (382)
+++||||||++||+.+.+.+.+.+++. .+++|+|+
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 178 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLL 178 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999754 35677764
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=287.82 Aligned_cols=150 Identities=33% Similarity=0.469 Sum_probs=134.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH-HHHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 265 (382)
-|+++|++++| +++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.+
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 7999999999999999999999999999999999999999999999999988763 4567889
Q ss_pred EEecCCC---ccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 266 GLVSQDI---TLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 266 ~~v~Q~~---~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
+|++|++ .++ ..|++||+.++.. ||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh---------------------------------------cCHHHHHHHHHHHH
Confidence 9999995 344 5699999965310 99999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 159 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL 159 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999998854 677764
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=304.61 Aligned_cols=180 Identities=24% Similarity=0.332 Sum_probs=146.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++||+++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 58999999999743 469999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EecCCCcc---ccccHHHHHcCCCCC-------C-CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 267 LVSQDITL---FSGTVAENIGYRDLM-------T-KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 267 ~v~Q~~~l---f~~ti~eNi~~~~~~-------~-~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
|++|++.+ +..++++|+.++... . ....+.+.++++..++.++.+. ...+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-----------QIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHH
Confidence 99999875 455899998753210 0 0112345566777777655433 336799999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tvii 197 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLV 197 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999864 677764
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=291.78 Aligned_cols=156 Identities=36% Similarity=0.501 Sum_probs=138.5
Q ss_pred cEEEEeEEEEeCCC----CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CCCCceEEEcCEeCCCCCHHH
Q 016798 187 DVKFCNISFKYADN----MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~----~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~ 260 (382)
.|+++||+|+|++. ..++++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 246999999999999999999999999999999999999 9999999999998864 35
Q ss_pred HhcceEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+++.++|++|++.+|.. |++||+.++.. . . .||||||||++||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~--------~----~------------------------~LS~G~~qrv~la 123 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK--------L----R------------------------GLSGGERKRVSIA 123 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH--------h----c------------------------cCCHHHHHHHHHH
Confidence 67889999999998875 99999954210 0 0 8999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++++|+++||||||++||..+.+.+.+.|+++.+ ++|+|+
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 166 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999864 678764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=287.45 Aligned_cols=180 Identities=30% Similarity=0.447 Sum_probs=153.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 265 (382)
-++++||+..|+. .++|++|||++++||+++++|+||+|||||++.|+|+.+|.+|+|.++|.|+...+++.. |.-|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 4789999999976 369999999999999999999999999999999999999999999999999999987765 5579
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+||||.-.+|+. ||+||+.+|..... +++ .....+++..+-+| -+.......+.+|||||+|.+||||||+.
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~--~~~----~~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARR--DKE----AQERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhccc--ccc----cccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 999999999966 99999997742111 101 11111344455556 46666777899999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
+|++|+|||||.+|-|.-.++|.+.|+++.+
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~ 184 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRK 184 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999985
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=302.62 Aligned_cols=187 Identities=31% Similarity=0.420 Sum_probs=152.1
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC------EeCCCCCHH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD------HDVQNIRLD 259 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g------~~~~~~~~~ 259 (382)
+.|.++|++++|++ +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++...+..
T Consensus 9 ~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 35999999999975 3699999999999999999999999999999999999999997666665 566666667
Q ss_pred HHhcceEEecCCCccccc-cHHHHHcCCCCCCCC-CH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKI-DM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~-~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.+|+.++|++|++.+|.+ |++||+.++...... ++ +.+.++++..++.+++. ......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 788899999999999976 999999865321111 22 23345555555543221 123445688999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++||||++.+|+++||||||++||..+++.+.+.|+++.+++|+|+
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiil 207 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVI 207 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEE
Confidence 999999999999999999999999999999999999999877778774
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=300.97 Aligned_cols=186 Identities=23% Similarity=0.320 Sum_probs=147.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe-----CCCCCHHH-
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD-----VQNIRLDS- 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~-----~~~~~~~~- 260 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4899999999975 369999999999999999999999999999999999999999999999998 77766544
Q ss_pred ---HhcceEEecCCCc--ccc-ccHHHHHcCCCC-CCCCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHH
Q 016798 261 ---LRRHVGLVSQDIT--LFS-GTVAENIGYRDL-MTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQ 332 (382)
Q Consensus 261 ---~r~~i~~v~Q~~~--lf~-~ti~eNi~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq 332 (382)
+++.++|++|++. ++. .|+.||+.+... ....+..+..+ ...++++.+ |++ +.+...+.+|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGGM 156 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHHH
Confidence 3567999999984 443 488888853210 00011112111 123455554 333 34566778999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ +.|+|+
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 207 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVI 207 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 9999999999999999999999999999999999999998754 667764
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=310.89 Aligned_cols=186 Identities=24% Similarity=0.297 Sum_probs=148.1
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC----CCceEEEcCEeCCCCCHHHH
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRLDSL 261 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~----~~G~i~~~g~~~~~~~~~~~ 261 (382)
|+++|+++.|+... ..+|+||||+|++||++||||+||||||||+++|+|+++| ++|+|.++|.++.+++.+++
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 78999999997532 3589999999999999999999999999999999999974 89999999999988887655
Q ss_pred h----cceEEecCCCc--cccc-cHHHHHc----CCCC-CCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCC
Q 016798 262 R----RHVGLVSQDIT--LFSG-TVAENIG----YRDL-MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (382)
Q Consensus 262 r----~~i~~v~Q~~~--lf~~-ti~eNi~----~~~~-~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lS 329 (382)
+ +.|+||+|+|. +++. |+.+++. .... ......+++.++++.+++.+.. ..+.....+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 4 36999999995 4433 6665553 2111 0011234566777777764321 11334568999
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||||++|||||+.+|++||+||||++||..++.++++.|+++.+ +.|+|+
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~ 209 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVL 209 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999999999864 567764
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=286.71 Aligned_cols=181 Identities=27% Similarity=0.437 Sum_probs=153.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
+++.+++.+|++. ..+++||||+++.||++||.|||||||||+++.|++++.|++|.|.+||.|... ++...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcce
Confidence 6789999999863 358999999999999999999999999999999999999999999999999876 55678999999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++-+..|+.. |++|||.|.....+.+. .++.+..+..++.+.++ .+..+||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHHH
Confidence 9988788854 99999986532222222 34445555555555553 35678999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++||++++|||||||||..+.+.+.+.+++++. +|++|+
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viF 188 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIF 188 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEE
Confidence 999999999999999999999999999999986 888875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=314.82 Aligned_cols=177 Identities=30% Similarity=0.406 Sum_probs=146.4
Q ss_pred eEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE----eCCCCCHHHH---h-c
Q 016798 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH----DVQNIRLDSL---R-R 263 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~----~~~~~~~~~~---r-~ 263 (382)
++..+|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...+ | +
T Consensus 29 ~~~~~~g~--~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~ 106 (382)
T TIGR03415 29 EILDETGL--VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106 (382)
T ss_pred HHHHhhCC--EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence 44455643 35899999999999999999999999999999999999999999999996 5666655544 3 5
Q ss_pred ceEEecCCCcccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 264 HVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 264 ~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
+++||+|++.+|+ .|++||+.++......+ .+++.++++.+++.++.+..| .+||||||||++|
T Consensus 107 ~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~L 175 (382)
T TIGR03415 107 RVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGL 175 (382)
T ss_pred CEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHH
Confidence 7999999999997 69999998763211122 234566777777766655544 6899999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||+.+|+|||||||||+||+.+...+++.|.++.+ ++|+|+
T Consensus 176 ARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~ 220 (382)
T TIGR03415 176 ARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIF 220 (382)
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999864 678774
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=289.52 Aligned_cols=155 Identities=28% Similarity=0.409 Sum_probs=136.5
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CCCCceEEEcCEeCCCCCHHHHh
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~r 262 (382)
.|+++|++|.|++. ++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58899999999752 246999999999999999999999999999999999986 489999999999875 4567
Q ss_pred cceEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
++++|++|++.+|.. |++||+.++. .++ +||||||||++||||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~------------~~~------------------------~LSgGe~qrv~la~a 122 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA------------LLR------------------------GLSVEQRKRLTIGVE 122 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH------------HHh------------------------cCCHHHhHHHHHHHH
Confidence 889999999998875 9999996531 000 899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 123 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 163 (192)
T cd03232 123 LAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILC 163 (192)
T ss_pred HhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999999999999998864 677764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=313.43 Aligned_cols=175 Identities=27% Similarity=0.396 Sum_probs=144.8
Q ss_pred eEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC----HHHHhcceEE
Q 016798 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSLRRHVGL 267 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~r~~i~~ 267 (382)
|++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....++.++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999642 34 999999999999999999999999999999999999999999999986532 2356788999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCC--HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKID--MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~--~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
++|++.+|+. |++||+.++....... .+++.+.++..++.++.+. ...+||||||||++|||||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGR-----------LPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHHc
Confidence 9999999975 9999998764211111 2235556666666554443 447999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiii 187 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY 187 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999864 577764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=293.56 Aligned_cols=174 Identities=29% Similarity=0.407 Sum_probs=142.1
Q ss_pred eEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC----CHHHHhcceEE
Q 016798 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLDSLRRHVGL 267 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~ 267 (382)
+|+++|++. .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +...+++.++|
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 899999763 34 99999999 99999999999999999999999999999999999988643 23356778999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCC--CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTK--IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
++|++.+|. .|++||+.++..... ..++++.+.++..++.+ .+......||||||||++||||++.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-----------LLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHh-----------HhhcCcccCCHHHHHHHHHHHHHhc
Confidence 999999986 599999986532110 11233445555555443 3344568999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 187 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIF 187 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 9999999999999999999999999998854 577764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=309.05 Aligned_cols=187 Identities=24% Similarity=0.336 Sum_probs=148.8
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEeCCCCCHHHH
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~ 261 (382)
-|+++|+++.|+.. ...+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999632 246899999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----cceEEecCCC--cccc-ccHHHHHcCCCC-CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCC
Q 016798 262 R----RHVGLVSQDI--TLFS-GTVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (382)
Q Consensus 262 r----~~i~~v~Q~~--~lf~-~ti~eNi~~~~~-~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lS 329 (382)
+ +.|+||+|+| .+++ .|+.+|+..... ....+. +++.+.++.+++ |++. ..++....+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccCC
Confidence 3 4799999999 4554 378887743110 001222 233344444443 3332 22456678999
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||||++|||||+.+|++||+||||++||..+...+.+.|+++.+ +.|+|+
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~ 217 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIM 217 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999999999999999999999999999865 567764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=296.56 Aligned_cols=168 Identities=29% Similarity=0.463 Sum_probs=146.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4889999999975 3599999999999999999999999999999999999999999999986 34699
Q ss_pred EecCCCcccc---ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 267 LVSQDITLFS---GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 267 ~v~Q~~~lf~---~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
|++|++.++. .|+++|+.+.. ..+++++.++++.+++.++++.. ...||||||||++||||++
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~ 136 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRP---GTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALL 136 (251)
T ss_pred EeccccccccccChhHHHHHhccc---cccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHh
Confidence 9999998765 48999986532 23467788888888887776543 3789999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 137 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiii 176 (251)
T PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM 176 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999998764 677764
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=285.92 Aligned_cols=359 Identities=23% Similarity=0.259 Sum_probs=260.1
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHH--HHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCE--SARFRRLAH 80 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~--~~~~~~~~~ 80 (382)
+++.|+||.+.+++++.+.+.++...+...+..+.....++...++.+..+..++|.++++.+....++ .+.+....+
T Consensus 140 aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~ 219 (546)
T COG4615 140 AYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQ 219 (546)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchH
Confidence 567899999999998888777777777788888888888999999999999999999999987633221 122221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 81 SDLCELLKKRKMKALIPQTVQLIYFGAL-FILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAI 159 (382)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (382)
.+.+...+...+......+..++.++.+ .++|+. ...++-+.....++++...++-.|+.+....++.+..+.++.
T Consensus 220 ~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~la---l~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~ 296 (546)
T COG4615 220 EYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA---LSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAF 296 (546)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Confidence 1111101111111011111111111111 111111 122333444445566666677789999999999999999999
Q ss_pred HHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 160 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|+.++-..|+. ...+...+.+ .-..|+++||.|.|+++. --+.-||++|++||.+-|+|.|||||||++++|.|+|
T Consensus 297 ~kiakle~~~~~-a~~~~~q~~p-~~~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~ 373 (546)
T COG4615 297 NKIAKLELAPYK-ADFPRPQAFP-DWKTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY 373 (546)
T ss_pred HHHHHhhcCCcc-ccCCCCCcCC-cccceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc
Confidence 999887653322 2222222222 245899999999998764 3578899999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||.+++.-+++++|+-++-|+.|.|+|+.++ + ++...+++.+...++...+.+..+- -+|-=+
T Consensus 374 ~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~-~e~~as~q~i~~~LqrLel~~ktsl-~d~~fs 445 (546)
T COG4615 374 QPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------G-PEGKASPQLIEKWLQRLELAHKTSL-NDGRFS 445 (546)
T ss_pred CCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------C-CccCCChHHHHHHHHHHHHhhhhcc-cCCccc
Confidence 9999999999999999999999999999999999998754 2 2223577888888877777655432 222111
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCcee
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVR 380 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI 380 (382)
-..||-|||.|+|+--|++.+.||++|||=-+--||.-++.+.+.+--.. .|||++
T Consensus 446 -----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~ 503 (546)
T COG4615 446 -----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIF 503 (546)
T ss_pred -----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEE
Confidence 25899999999999999999999999999999999999998888765543 478886
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=308.76 Aligned_cols=187 Identities=20% Similarity=0.271 Sum_probs=149.3
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC----CCCceEEEcCEeCCCCCHHH
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD----PLSGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~----~~~G~i~~~g~~~~~~~~~~ 260 (382)
-|+++|++++|+.. ...+++||||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.+++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999632 2458999999999999999999999999999999999996 58999999999998887665
Q ss_pred Hh----cceEEecCCCc--ccc-ccHHHHHcCCCC---CC-----C--CCHHHHHHHHHHcChHHHHHhCCCCcccccCC
Q 016798 261 LR----RHVGLVSQDIT--LFS-GTVAENIGYRDL---MT-----K--IDMERVEHTARTANADEFVRTLPQGYNTHIGP 323 (382)
Q Consensus 261 ~r----~~i~~v~Q~~~--lf~-~ti~eNi~~~~~---~~-----~--~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge 323 (382)
++ +.|+||+|+|. +++ .|+.+|+..... .. . ...+++.++++.+++.+.-. ....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhC
Confidence 43 47999999997 333 489999863100 00 0 01245667777777753211 1123
Q ss_pred CCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
...+||||||||++|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~ 214 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILL 214 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 3479999999999999999999999999999999999999999999999865 567764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=299.18 Aligned_cols=187 Identities=34% Similarity=0.447 Sum_probs=148.7
Q ss_pred EEEEeEEEEeCCC-------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH-
Q 016798 188 VKFCNISFKYADN-------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD- 259 (382)
Q Consensus 188 i~~~~v~f~y~~~-------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~- 259 (382)
|+++||+|+|+++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 7899999999741 34699999999999999999999999999999999999999999999999999876653
Q ss_pred --HHhcceEEecCCCc--cc-cccHHHHHcCCCC-CCCCCHHHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCChHH
Q 016798 260 --SLRRHVGLVSQDIT--LF-SGTVAENIGYRDL-MTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQ 332 (382)
Q Consensus 260 --~~r~~i~~v~Q~~~--lf-~~ti~eNi~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lSgGq 332 (382)
.+++.++|++|++. ++ ..|++||+.+... ....+.++ ....+.+.++.+ |+++ ........|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 46788999999984 44 4599999854210 00111111 111223344443 5543 3455678999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||++||||++.+|++|||||||++||..+...+.+.|+++.+ ++|+|+
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii 207 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLF 207 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 9999999999999999999999999999999999999998864 677764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=297.87 Aligned_cols=182 Identities=21% Similarity=0.277 Sum_probs=146.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC----CCceEEEcCEeCCCCCHHHHh
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~----~~G~i~~~g~~~~~~~~~~~r 262 (382)
.|+++|++++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 3 3699999999999999999999999999999999999999 999999999998632 2234
Q ss_pred cceEEecCCCc-ccc--ccHHHHHcCCC--CCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 263 RHVGLVSQDIT-LFS--GTVAENIGYRD--LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 263 ~~i~~v~Q~~~-lf~--~ti~eNi~~~~--~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
+.++|++|++. .|. .|+.+|+.+.. ......++++.++++.+++.++ ++.++....+||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 343 48888875310 0011234556667777666432 12345566899999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++.+|++|||||||++||..+...+.+.|+++.+ ++|+|+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~ 196 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLL 196 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999999999999999999999999999998753 577764
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=286.22 Aligned_cols=176 Identities=29% Similarity=0.480 Sum_probs=149.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc-ce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR-HV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~-~i 265 (382)
.+..+|+.++|.. +++++++||++++||++++.|||||||||.+.++.|+.+|++|+|.+||.|+..+++....+ -|
T Consensus 4 ~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 5788999999975 46999999999999999999999999999999999999999999999999999999886544 59
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCC------HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKID------MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~------~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
||+||+|.+|.+ ||+|||.........+ .+++.+.++..++.+.- ...|..||||||+|+.|
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr-----------~~~a~sLSGGERRR~EI 150 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR-----------DSKAYSLSGGERRRVEI 150 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHh-----------cCcccccccchHHHHHH
Confidence 999999999977 9999997543211111 12334455555554433 34579999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
||||..+|+.++||||++++||.+-..|++.++.++.
T Consensus 151 ARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~ 187 (243)
T COG1137 151 ARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187 (243)
T ss_pred HHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998864
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=324.60 Aligned_cols=182 Identities=26% Similarity=0.335 Sum_probs=152.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHh-cce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR-RHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~i 265 (382)
-|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999974 3599999999999999999999999999999999999999999999999999877766554 469
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+|++|++.+|.. |++||+.++........+++.++++..++.++ ......+||||||||++|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHHHc
Confidence 999999998875 99999987642111112344555555554332 233457899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii 195 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVF 195 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999998754 577764
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=283.26 Aligned_cols=151 Identities=39% Similarity=0.553 Sum_probs=134.8
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEe
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
+++||+|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 46899999975 3699999999999999999999999999999999999999999999999999888888888889999
Q ss_pred cCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCE
Q 016798 269 SQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV 348 (382)
Q Consensus 269 ~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~i 348 (382)
+| +++.+++.+++.. ....||||||||++||||++++|++
T Consensus 79 ~q-----------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 79 PQ-----------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred HH-----------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99 5555666655443 3478999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 349 LILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 349 lilDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||||++||+++...+.+.|+++.+ ++|+|+
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii 153 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM 153 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999998865 677764
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=285.82 Aligned_cols=154 Identities=30% Similarity=0.432 Sum_probs=134.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC--CCCCCceEEEcCEeCCCCCHHHH-hcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSL-RRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~~ 264 (382)
++++|++++|++ .++++|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 468999999974 3699999999999999999999999999999999999 58999999999999988776554 456
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
++|++|++.+|++ |+++|+ .. ...+||||||||++||||++
T Consensus 79 i~~v~q~~~~~~~~~~~~~l---------------------------~~-----------~~~~LS~G~~qrv~laral~ 120 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL---------------------------RY-----------VNEGFSGGEKKRNEILQLLL 120 (200)
T ss_pred EEEeecChhhccCccHHHHH---------------------------hh-----------ccccCCHHHHHHHHHHHHHh
Confidence 9999999999876 555554 00 11479999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 121 ~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii 159 (200)
T cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159 (200)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999864 677764
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=295.10 Aligned_cols=186 Identities=24% Similarity=0.314 Sum_probs=146.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe-----CCCCCHHHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD-----VQNIRLDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~-----~~~~~~~~~ 261 (382)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+....
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999975 358999999999999999999999999999999999999999999999987 666655432
Q ss_pred ----hcceEEecCCCc--cc-cccHHHHHcCCCC-CCCCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHH
Q 016798 262 ----RRHVGLVSQDIT--LF-SGTVAENIGYRDL-MTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQ 332 (382)
Q Consensus 262 ----r~~i~~v~Q~~~--lf-~~ti~eNi~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq 332 (382)
++.++|++|++. ++ ..|+.+|+.+... .......+. ...+.++++.+ |++ +........|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHHH
Confidence 457999999985 33 4588888853100 000011111 11233455555 343 45566778999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 204 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVII 204 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999998753 677764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=294.49 Aligned_cols=168 Identities=29% Similarity=0.362 Sum_probs=134.5
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEec-CCCccc-cccH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS-QDITLF-SGTV 279 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~lf-~~ti 279 (382)
.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987553 345678899997 667776 4599
Q ss_pred HHHHcCCCCCCCCCHHH----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcC
Q 016798 280 AENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355 (382)
Q Consensus 280 ~eNi~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpt 355 (382)
+||+.+.......+.++ +..+++..++.+.. ++ ....||||||||++||||++.+|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~----~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-------DT----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------cC----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99997542111122222 23344444443322 32 34689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 356 SALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 356 s~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiii 209 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLL 209 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999854 577764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=294.54 Aligned_cols=183 Identities=24% Similarity=0.373 Sum_probs=147.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC--CCCCCceEEEcCEeCCCCCHHHHhc-
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSLRR- 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~r~- 263 (382)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4899999999974 3599999999999999999999999999999999998 6899999999999998877665554
Q ss_pred ceEEecCCCccccc-cHHHHHcCCCCC-------CCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCC-CCCh
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRDLM-------TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGS-SLSG 330 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~~~-------~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~-~lSg 330 (382)
.++|++|++.+|++ |+.+|+.++... .+.+ .+++.++++.+++.+ +.+..... .|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSg 154 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFSG 154 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCCH
Confidence 48999999999976 899998653210 0011 123344555555431 11222233 5999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||||++||||++++|+++||||||++||..+.+.+.+.|+++.+ ++|+|+
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~ 206 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIIL 206 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999998864 678764
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=321.92 Aligned_cols=182 Identities=27% Similarity=0.397 Sum_probs=149.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC--CCceEEEcCEeCCCCCHHH-Hhc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDS-LRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~-~r~ 263 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... +|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999974 3699999999999999999999999999999999999996 8999999999998766554 467
Q ss_pred ceEEecCCCccccc-cHHHHHcCCCCCC---CCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRDLMT---KIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~~~~---~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
.++||+|++.+|.. |++||+.++.... ..+.+ ++.++++.. |++........+||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQL-----------KLDINPATPVGNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHc-----------CCCCCcccchhhCCHHHHHH
Confidence 89999999998865 9999998764211 11222 233333333 33333344557899999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~ 198 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIY 198 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999999875 3567764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=321.17 Aligned_cols=182 Identities=29% Similarity=0.386 Sum_probs=149.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH-HHHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 265 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999974 359999999999999999999999999999999999999999999999999875543 3567889
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCC--C-CCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMT--K-IDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~--~-~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
+|++|++.+|+. |++||+.++.... . .+. +++.++++.++ ++........+||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLG-----------VDIDPDTPLKYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcC-----------CCCCcCCchhhCCHHHHHHHH
Confidence 999999998875 9999998753110 1 122 22333344333 332233455789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii 195 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILY 195 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999998754 577764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=323.06 Aligned_cols=182 Identities=24% Similarity=0.361 Sum_probs=148.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 265 (382)
-|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999974 359999999999999999999999999999999999999999999999999987776543 4679
Q ss_pred EEecCCCccccc-cHHHHHcCCCCC----CC---CCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLM----TK---IDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~----~~---~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
+||+|++.+|.. |++||+.++... .. .+. +++.++++..++ +........+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL-----------KVDLDEKVANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCC-----------CCCcccchhhCCHHHH
Confidence 999999998865 999999875310 01 011 223333433333 3233344578999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiii 200 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVY 200 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999864 577764
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=290.06 Aligned_cols=183 Identities=22% Similarity=0.294 Sum_probs=140.2
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CCCCceEEEcCEeCCCCCHHHHh-cc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDSLR-RH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~r-~~ 264 (382)
|+++|++++|++ .++++|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|.++...+....+ +.
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 689999999975 35999999999999999999999999999999999994 69999999999999877766554 57
Q ss_pred eEEecCCCccccc-cHHHHHcCC-------CCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYR-------DLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~-------~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
++|++|++.++.. |..+++.+. ......+. +.+.+.++.. .+|+++.+... ...|||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~--~~~LS~G~ 150 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL-------KMPEDLLTRSV--NVGFSGGE 150 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc-------CCChhhcccCC--CCCCCHHH
Confidence 9999999987764 555544221 00000011 1111222222 23333333211 13799999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||++||||++++|++|||||||++||..+...+.+.|+++.+ ++|+|+
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii 200 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFII 200 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999998865 578764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=321.35 Aligned_cols=182 Identities=26% Similarity=0.331 Sum_probs=147.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH-Hhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 265 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 36999999999999999999999999999999999999999999999999987655444 35679
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCC----CCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMT----KIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~----~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+|++|++.+|.. |++||+.++.... ..+.+ ++.++++..+ +.........+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLN-----------LRFSSDKLVGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcC-----------CCCCccCchhhCCHHHHHHH
Confidence 999999998865 9999998753210 11222 2233333333 33333344578999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii 196 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVY 196 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999998754 567664
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=272.97 Aligned_cols=135 Identities=39% Similarity=0.513 Sum_probs=124.3
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH-HHhcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i~ 266 (382)
|+++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+++++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 4789999999753 699999999999999999999999999999999999999999999999999887653 4577899
Q ss_pred EecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 267 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
|++| ||||||||++||||++++|
T Consensus 79 ~~~q---------------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 79 MVYQ---------------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred EEEe---------------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 9999 9999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+++||||||++||..+.+.+.+.|+++.+ ++|+|+
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 137 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIF 137 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999998853 677764
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=288.24 Aligned_cols=161 Identities=34% Similarity=0.424 Sum_probs=132.9
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCcccc-ccHHHHH
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAENI 283 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi 283 (382)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|++|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876443 2489999999987 5999999
Q ss_pred cCCCC--CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCC
Q 016798 284 GYRDL--MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357 (382)
Q Consensus 284 ~~~~~--~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~ 357 (382)
.++.. ....++ +++.+.++..++.++.+. ....||||||||++||||++.+|+++||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 76411 011222 234555666666554433 3478999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhC--CCceec
Q 016798 358 LDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 358 LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~ 170 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLM 170 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999998753 577764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=287.98 Aligned_cols=175 Identities=26% Similarity=0.365 Sum_probs=143.8
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEe
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|.++...+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 46788774 17999999999999999999999999999999999995 599999999999888877888889999
Q ss_pred cCCCcc-ccccHHHHHcCCCCCCCCC---HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 269 SQDITL-FSGTVAENIGYRDLMTKID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 269 ~Q~~~l-f~~ti~eNi~~~~~~~~~~---~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+|++.+ +..|++||+.++....... .+++.++++..++.+.. ......||||||||++||||++.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL-----------GRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHhc
Confidence 999865 4679999998764211101 23445555555554433 33457999999999999999997
Q ss_pred -------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 345 -------NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 345 -------~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~ 188 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVM 188 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 679999999999999999999999999886 4677764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=315.56 Aligned_cols=177 Identities=25% Similarity=0.284 Sum_probs=151.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 8899999999753 59999999999999999999999999999999999999999999999988876666667778999
Q ss_pred ecCCCcc--c-------cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 268 VSQDITL--F-------SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 268 v~Q~~~l--f-------~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
++|++.+ + ..|++||+.++. ...+++.++++..++.+..+.. ...||||||||++|
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~l 146 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV----KDPARCEQLAQQFGITALLDRR-----------FKYLSTGETRKTLL 146 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch----hHHHHHHHHHHHcCCHhhhhCC-----------cccCCHHHHHHHHH
Confidence 9999753 2 458999886532 1245667777777776654443 47999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii 190 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVL 190 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999999999999999999999864 567764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=321.75 Aligned_cols=184 Identities=29% Similarity=0.350 Sum_probs=150.3
Q ss_pred cEEEEeEEEEeCCC---------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC
Q 016798 187 DVKFCNISFKYADN---------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (382)
Q Consensus 187 ~i~~~~v~f~y~~~---------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~ 257 (382)
-|+++||++.|+.. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 48999999999621 135899999999999999999999999999999999999999999999999998765
Q ss_pred HH---HHhcceEEecCCCc--ccc-ccHHHHHcCCCCCCCC-C----HHHHHHHHHHcChH-HHHHhCCCCcccccCCCC
Q 016798 258 LD---SLRRHVGLVSQDIT--LFS-GTVAENIGYRDLMTKI-D----MERVEHTARTANAD-EFVRTLPQGYNTHIGPRG 325 (382)
Q Consensus 258 ~~---~~r~~i~~v~Q~~~--lf~-~ti~eNi~~~~~~~~~-~----~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G 325 (382)
.. .+|++|+||+|+|. +++ .|+.||+.+....... + .+++.+.++.+++. +..+.. .
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----------~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY-----------P 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-----------c
Confidence 43 35678999999984 665 4999999753110011 1 23455666666663 344433 3
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
.+||||||||++|||||+.+|++|||||||++||..+..++.+.|+++.+ +.|+|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~ 519 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLF 519 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 78999999999999999999999999999999999999999999998864 577764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=316.41 Aligned_cols=183 Identities=26% Similarity=0.377 Sum_probs=147.0
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH-HHHhcceEEe
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHVGLV 268 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v 268 (382)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999974 369999999999999999999999999999999999999999999999999876554 3456789999
Q ss_pred cCCCcccc-ccHHHHHcCCCC-CCC--CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 269 SQDITLFS-GTVAENIGYRDL-MTK--IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 269 ~Q~~~lf~-~ti~eNi~~~~~-~~~--~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+|++.+|. .|++||+.++.. ... .+.++..+ .+.++++.+ |++........+||||||||++|||||++
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 99998875 499999987531 111 12222111 122334443 44444455678999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+|++|||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 189 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVY 189 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999875 3577764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=263.73 Aligned_cols=178 Identities=31% Similarity=0.413 Sum_probs=148.8
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH---HH
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~ 261 (382)
-|++++++.+.+.+ +..+|++|+|.|++||.+|||||||||||||+-+++|+-+|++|+|.+.|+++..++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47788888877654 34689999999999999999999999999999999999999999999999999998865 34
Q ss_pred h-cceEEecCCCccc-cccHHHHHcCCCCCCC--C--CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 262 R-RHVGLVSQDITLF-SGTVAENIGYRDLMTK--I--DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 262 r-~~i~~v~Q~~~lf-~~ti~eNi~~~~~~~~--~--~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
| +++|+|+|..+|. +.|-.||+..-..... . ..+...+.++.+++.+-+.+.| .+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 4 5799999999987 5599999975322111 1 1233456666776666665555 8999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
+||||||...|+||+-||||-+||.+|-.+|.+.+-.+-.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr 194 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999877654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=313.38 Aligned_cols=185 Identities=27% Similarity=0.396 Sum_probs=146.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC--CCceEEEcCEeCCCCCHHH-Hhcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDS-LRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~-~r~~ 264 (382)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .++.
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 689999999964 3599999999999999999999999999999999999987 7999999999998776544 4567
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCCC----CCCHHHHHHHHHHcChHHHHHhCCCCccccc-CCCCCCCChHHHHHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLMT----KIDMERVEHTARTANADEFVRTLPQGYNTHI-GPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~~----~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v-ge~G~~lSgGq~Qrial 338 (382)
++||+|++.+|.. |++||+.++.... ..+.++..+ .+.++++.+ |++... .....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHH
Confidence 9999999998865 9999998753211 011221111 112233332 222211 12356899999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 196 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVY 196 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999998754 567764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=269.11 Aligned_cols=173 Identities=27% Similarity=0.405 Sum_probs=147.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.+.++++|.+|++...++|+|+|++|.+||.++++||||||||||+++++|+.+|..|+|.+||.++..-..+ =|
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----rg 77 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----RG 77 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----ce
Confidence 3567899999987666699999999999999999999999999999999999999999999999999764432 38
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCHHH----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
+|+|++-|++= |+.||+.||......+..+ ..+.+..+++.++-.+ ...+||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~-----------~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHK-----------YIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccccc-----------ceEeecchHHHHHHHHHH
Confidence 99999999976 9999999986555555432 2345556666554333 347999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
|.-+|+.|+||||+++||.-|++++++.|-++++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~ 180 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988764
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=283.20 Aligned_cols=168 Identities=27% Similarity=0.304 Sum_probs=133.4
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC----CCceEEEcCEeCCCCCHHHHhcceEEecCCCc-cc-c-
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT-LF-S- 276 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~----~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf-~- 276 (382)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..++.++|++|++. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998654 223468999999995 34 3
Q ss_pred ccHHHHHcCCCCCCC----CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEe
Q 016798 277 GTVAENIGYRDLMTK----IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352 (382)
Q Consensus 277 ~ti~eNi~~~~~~~~----~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililD 352 (382)
.|+.||+.+...... ...+++.+.++.+++.+ + ++........||||||||++||||++++|+++|||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 489999854211000 11234555666655531 1 12344456899999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 353 EATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 353 Epts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||++||..+.+.+.+.|+++.+ ++|+|+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 181 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILL 181 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999998864 677764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=267.52 Aligned_cols=176 Identities=30% Similarity=0.429 Sum_probs=153.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+.+|+|++-.++ .+|+++||++++||..||+||||||||||+|.|+|...|++|++.+||.++.+++..++.++-++
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 6789999988653 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcc-ccccHHHHHcCCCCCC----CCCHHH--HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 268 VSQDITL-FSGTVAENIGYRDLMT----KIDMER--VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 268 v~Q~~~l-f~~ti~eNi~~~~~~~----~~~~~~--~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+||+..+ |+-|++|-+.+|+... +..+++ ..+++.++++..+-.+ .-..|||||+||+.+||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----------~y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----------DYRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----------chhhcCchHHHHHHHHH
Confidence 9999997 8999999999986322 111333 5678888888776543 34789999999999999
Q ss_pred HccC------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC
Q 016798 341 ALYQ------NSSVLILDEATSALDSRSELLVRQAVDRLLGH 376 (382)
Q Consensus 341 all~------~~~ililDEpts~LD~~~~~~i~~~l~~~~~~ 376 (382)
.|.+ ++++|+||||||+||...+..+++..+++.++
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~ 190 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE 190 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc
Confidence 9965 34589999999999999999999999998653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=313.31 Aligned_cols=184 Identities=17% Similarity=0.301 Sum_probs=144.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH-HHHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 265 (382)
-|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.+
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 599999998762 38999999999999999999999999999999999999999999999999865543 3557789
Q ss_pred EEecCCC---ccccc-cHHHHHcCCCCCC--------C-CCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChH
Q 016798 266 GLVSQDI---TLFSG-TVAENIGYRDLMT--------K-IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGG 331 (382)
Q Consensus 266 ~~v~Q~~---~lf~~-ti~eNi~~~~~~~--------~-~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgG 331 (382)
+||+|++ .+|+. |++||+.++.... . .+..+. ...+.++++.+ |+. .........||||
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG 413 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSGG 413 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCChH
Confidence 9999984 57754 9999998753100 0 011110 01122333333 332 2234445789999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~ 464 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILM 464 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999999999999999875 4677764
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=282.90 Aligned_cols=184 Identities=30% Similarity=0.480 Sum_probs=159.8
Q ss_pred cEEEEeEEEEeCCCC----------------------CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc
Q 016798 187 DVKFCNISFKYADNM----------------------PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~----------------------~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G 244 (382)
.|+++||++-|+.+. ..-++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 577788877775420 1237899999999999999999999999999999999999999
Q ss_pred eEEEcCEeCCCCCHHHHh----cceEEecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCC
Q 016798 245 CILVDDHDVQNIRLDSLR----RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQ 315 (382)
Q Consensus 245 ~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~ 315 (382)
+|+++|.|+..++.+++| +++++|+|..-||+- ||.||..||......+. +...++++.++|++|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999988764 469999999999966 99999999976555543 34567888999999998887
Q ss_pred CcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 316 Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
.+||||++||+.|||||..||+||++|||+|+|||--+..+++.|.++.+ +||+++
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvF 220 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVF 220 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEE
Confidence 79999999999999999999999999999999999999999999877653 678875
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=311.98 Aligned_cols=187 Identities=26% Similarity=0.331 Sum_probs=147.9
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCCCHH
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~~~~ 259 (382)
-|+++|++++|+++ ..++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999742 24699999999999999999999999999999999999987 799999999999876643
Q ss_pred H---Hh-cceEEecCCCc--ccc-ccHHHHHcCCCC-CCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCC
Q 016798 260 S---LR-RHVGLVSQDIT--LFS-GTVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (382)
Q Consensus 260 ~---~r-~~i~~v~Q~~~--lf~-~ti~eNi~~~~~-~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~ 327 (382)
+ +| ++++|++|++. +++ .|+++|+.+... ....+ .+++.++++.+++.+... .......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3 33 57999999986 444 489999863210 00111 244556666666643110 11233479
Q ss_pred CChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 328 lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~ 212 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLF 212 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999999999999753 678764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=313.05 Aligned_cols=188 Identities=24% Similarity=0.392 Sum_probs=145.4
Q ss_pred cEEEEeEEEEeCC---CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEc-CEe---CCCCC--
Q 016798 187 DVKFCNISFKYAD---NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD-DHD---VQNIR-- 257 (382)
Q Consensus 187 ~i~~~~v~f~y~~---~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~-g~~---~~~~~-- 257 (382)
-|+++|++++|++ +..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 22469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhcceEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 258 -LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 258 -~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
...+|++++|++|++.+|+. |++||+.+.... ..+ .+++.++++..++.+. ..+........+||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEG 431 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHH
Confidence 22456789999999998865 999999753110 011 1234445555554210 0000123345789999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~ 483 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFII 483 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 99999999999999999999999999999999999999998853 577764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=312.23 Aligned_cols=181 Identities=24% Similarity=0.405 Sum_probs=143.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CCCCceEEEc----------------
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVD---------------- 249 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~~~G~i~~~---------------- 249 (382)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999964 36999999999999999999999999999999999996 7999999997
Q ss_pred -------CEeCC-------CCC---HHHHhcceEEecCC-Ccccc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHcCh
Q 016798 250 -------DHDVQ-------NIR---LDSLRRHVGLVSQD-ITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANA 306 (382)
Q Consensus 250 -------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~lf~-~ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l 306 (382)
|.++. ..+ ...+|+.++|++|+ +.+|+ .|++||+.++......+ .+++.++++.+++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 32221 111 12457789999998 57776 49999997642111122 2345556666666
Q ss_pred HHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 307 ~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
.+..++ ...+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 159 ~~~~~~-----------~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 159 SHRITH-----------IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred hhhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 554433 3478999999999999999999999999999999999999999999999853 678764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=313.63 Aligned_cols=183 Identities=30% Similarity=0.374 Sum_probs=147.4
Q ss_pred cEEEEeEEEEeCC---------CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC
Q 016798 187 DVKFCNISFKYAD---------NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (382)
Q Consensus 187 ~i~~~~v~f~y~~---------~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~ 257 (382)
-|+++|++++|+. +...+|+|+||+|++||+++|+||||||||||+++|+|++ |++|+|.++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 4899999999962 1246899999999999999999999999999999999999 58999999999987765
Q ss_pred HHH---HhcceEEecCCC--cccc-ccHHHHHcCCCCCC--CCC----HHHHHHHHHHcChH-HHHHhCCCCcccccCCC
Q 016798 258 LDS---LRRHVGLVSQDI--TLFS-GTVAENIGYRDLMT--KID----MERVEHTARTANAD-EFVRTLPQGYNTHIGPR 324 (382)
Q Consensus 258 ~~~---~r~~i~~v~Q~~--~lf~-~ti~eNi~~~~~~~--~~~----~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~ 324 (382)
... +|++++|++|++ .+|+ .|++||+.++.... ..+ ++++.++++..++. +... ..
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 422 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRH-----------RY 422 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHh-----------cC
Confidence 433 467899999998 3665 49999997642100 011 23344555555553 2332 34
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
..+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 481 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLF 481 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 478999999999999999999999999999999999999999999998853 678764
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=311.21 Aligned_cols=188 Identities=23% Similarity=0.322 Sum_probs=146.2
Q ss_pred cEEEEeEEEEeCC-CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-CCCceEEEcCEeCCCCCH-HHHhc
Q 016798 187 DVKFCNISFKYAD-NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVDDHDVQNIRL-DSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~-~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-~~~G~i~~~g~~~~~~~~-~~~r~ 263 (382)
-|+++|++++|+. +..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+. ..+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953 23469999999999999999999999999999999999998 599999999999865443 34567
Q ss_pred ceEEecCCC---cccc-ccHHHHHcCCCC--CCC---CCHHHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCChHHH
Q 016798 264 HVGLVSQDI---TLFS-GTVAENIGYRDL--MTK---IDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQR 333 (382)
Q Consensus 264 ~i~~v~Q~~---~lf~-~ti~eNi~~~~~--~~~---~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lSgGq~ 333 (382)
.++|++|++ .+|. .|+.||+.++.. ... .+.++. ...+.++++.+ |++. .......+||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 3664 599999986421 000 111111 11123334443 3321 23445679999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~ 460 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIV 460 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999999998754 677764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=315.74 Aligned_cols=187 Identities=27% Similarity=0.314 Sum_probs=146.8
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC----------
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ---------- 254 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~---------- 254 (382)
-|+++|++++|+.. ..++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 58999999999642 236999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cceEEecCCC--cccc-ccHHHHHcCCCCC-CCCCH----HHHHHHHHHcChHHHHHhCCCCcccccC
Q 016798 255 NIRLD---SLR-RHVGLVSQDI--TLFS-GTVAENIGYRDLM-TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIG 322 (382)
Q Consensus 255 ~~~~~---~~r-~~i~~v~Q~~--~lf~-~ti~eNi~~~~~~-~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vg 322 (382)
+.+.. .+| +.|+||+|+| .+++ .|++||+.++... ...+. +++.++++.+++.+. +..+.
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22222 233 4799999998 5776 4999999864210 01122 344455555555210 11223
Q ss_pred CCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 323 e~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
....+||||||||++|||||+.+|++|||||||++||+.+.+++.+.++++.+ ++|+|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~ 224 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIF 224 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 34579999999999999999999999999999999999999999999999863 677764
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=278.26 Aligned_cols=170 Identities=24% Similarity=0.290 Sum_probs=131.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
+.+++++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....+
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~- 94 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG- 94 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc-
Confidence 677888888875 4699999999999999999999999999999999999999999999999876321 11111
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
...+.|++||+.++......+.+ ++.++++..++.+.. + .....||||||||++||||++
T Consensus 95 -----~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSgG~~qrv~laral~ 158 (224)
T cd03220 95 -----FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-------D----LPVKTYSSGMKARLAFAIATA 158 (224)
T ss_pred -----CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-------h----CChhhCCHHHHHHHHHHHHHh
Confidence 12356999999764321111222 233444444443332 2 234689999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 159 ~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii 197 (224)
T cd03220 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVIL 197 (224)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999998754 467763
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=339.65 Aligned_cols=184 Identities=26% Similarity=0.376 Sum_probs=155.8
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++||+++|+++++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996434569999999999999999999999999999999999999999999999999865 456778899
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
||+||++.+|+. |++||+.+.......+ ++++.+.++.+++.+.. .....+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-----------~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-----------NEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999965 9999998642211122 23455556666554433 3445899999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+.+|+++|||||||+||+.+++.+.+.|+++.+++|+|+
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIl 1115 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIM 1115 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999988888874
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=313.80 Aligned_cols=184 Identities=36% Similarity=0.479 Sum_probs=152.5
Q ss_pred cEEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH---
Q 016798 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL--- 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~--- 261 (382)
-|+++|++++|+++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999742 2469999999999999999999999999999999999999999999999999998877654
Q ss_pred -hcceEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 262 -RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 262 -r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
|+.++|++|++.+|+. |+.||+.+.......+ +++..+.++..++.++ +.....+|||||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~-----------~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDR-----------VEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hcCCcccCCHHHHHH
Confidence 5689999999999975 9999997632111111 1233444555555444 444457999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++|||||+++|+++||||||++||..+.+.+.+.++++.+ ++|+|.
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tili 199 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVII 199 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999998864 677763
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=280.40 Aligned_cols=163 Identities=25% Similarity=0.379 Sum_probs=132.6
Q ss_pred EEeCCCCCCccceeeEEee-----CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEec
Q 016798 195 FKYADNMPLVLDQLNLHIR-----AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (382)
Q Consensus 195 f~y~~~~~~~l~~isl~i~-----~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 269 (382)
|+|++.. ..++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 1 ~~y~~~~-~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~ 67 (246)
T cd03237 1 YTYPTMK-KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP 67 (246)
T ss_pred CCCcccc-cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence 5787543 48899999997 68999999999999999999999999999999999984 589999
Q ss_pred CCCcc-ccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCE
Q 016798 270 QDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV 348 (382)
Q Consensus 270 Q~~~l-f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~i 348 (382)
|++.. +..|++||+.+.........+...++++..++.+.. .....+||||||||++|||||+++|++
T Consensus 68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQIL-----------DREVPELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99984 678999999653221111123344556665554443 334578999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 349 LILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 349 lilDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 171 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFV 171 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999854 677764
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=300.22 Aligned_cols=184 Identities=35% Similarity=0.434 Sum_probs=148.7
Q ss_pred CcEEEEeEEEEeCCC---------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe--CC
Q 016798 186 GDVKFCNISFKYADN---------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD--VQ 254 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~---------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~--~~ 254 (382)
.-++++|++++|... ...+++||||++++||++||||+||||||||.++|+|+++|++|+|.++|.+ ..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 357899999999841 2467999999999999999999999999999999999999999999999987 22
Q ss_pred CCCHHHHhcceEEecCCCcc--c-cccHHHHHcCCC----CCC-CCCHHHHHHHHHHcChHH-HHHhCCCCcccccCCCC
Q 016798 255 NIRLDSLRRHVGLVSQDITL--F-SGTVAENIGYRD----LMT-KIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRG 325 (382)
Q Consensus 255 ~~~~~~~r~~i~~v~Q~~~l--f-~~ti~eNi~~~~----~~~-~~~~~~~~~~~~~~~l~~-~i~~lp~Gldt~vge~G 325 (382)
.-+....|+.+-+|+|||+- - ..||+++|.-.. ... ..-.+.+.+.++.+++.+ +..+.|
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP----------- 427 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP----------- 427 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc-----------
Confidence 22344567899999999984 3 459999996321 110 011234666788887764 455544
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC--Ccee
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH--HTVR 380 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~--~TvI 380 (382)
.+||||||||+||||||..+|+++|+|||||+||+.+..+|.+.|+++.++ -|.+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~l 484 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYL 484 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEE
Confidence 899999999999999999999999999999999999999999999988653 4544
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=274.70 Aligned_cols=180 Identities=28% Similarity=0.446 Sum_probs=151.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHh-cceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR-RHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~i~ 266 (382)
+++++++.+|++ -.+++||||++++||++||+|||||||||++++|.|+|+|++|+|.++|.|+..+++.... ..|+
T Consensus 5 L~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 678999999976 3589999999999999999999999999999999999999999999999999999988764 4699
Q ss_pred EecCCCccccc-cHHHHHcCCCCCC----------CC--CH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMT----------KI--DM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~----------~~--~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lS 329 (382)
--+|.+.+|++ |+.||+..+.... .. .+ ++..+.++.+ |++-.-.+...+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v-----------gL~~~a~~~A~~Ls 151 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-----------GLGELADRPAGNLS 151 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc-----------CCchhhcchhhcCC
Confidence 99999999976 9999998652100 00 11 1222333333 55555566678999
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC--Ccee
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH--HTVR 380 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~--~TvI 380 (382)
+||++|+.|||||+.+|++|+||||.+|+.+.....+.+.|+++.++ .|++
T Consensus 152 yG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~til 204 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTIL 204 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEE
Confidence 99999999999999999999999999999999999999999999863 5654
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=261.15 Aligned_cols=181 Identities=33% Similarity=0.458 Sum_probs=153.7
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC---------
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI--------- 256 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~--------- 256 (382)
..++++|++++|+.. .+|++|||+.++|+.+.|+|.|||||||+++||.=+-.|+.|+|.++|..++-.
T Consensus 5 ~~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 5 NALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred cceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 368899999999864 599999999999999999999999999999999999999999999999987422
Q ss_pred ----CHHHHhcceEEecCCCccccc-cHHHHHcC------CCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCC
Q 016798 257 ----RLDSLRRHVGLVSQDITLFSG-TVAENIGY------RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRG 325 (382)
Q Consensus 257 ----~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~------~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G 325 (382)
....+|.+.++|+|+..|++- |+.||+.- |.+.. .--+..+..+.++|+.+--+..|
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~-ea~e~Ae~~L~kVGi~ek~~~YP----------- 150 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKA-EAIERAEKYLAKVGIAEKADAYP----------- 150 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHH-HHHHHHHHHHHHhCchhhhhcCc-----------
Confidence 134668899999999999965 99999863 22210 01234455677888887776666
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCcee
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVR 380 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI 380 (382)
..|||||+||+||||||.-+|+++++|||||+||++-.-++++.++++. .+||++
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv 206 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMV 206 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEE
Confidence 8999999999999999999999999999999999999999999999987 478875
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=307.97 Aligned_cols=184 Identities=22% Similarity=0.325 Sum_probs=145.3
Q ss_pred cEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEEcCEeCCCCCH-HHHhc
Q 016798 187 DVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQNIRL-DSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~~g~~~~~~~~-~~~r~ 263 (382)
-|+++|++++|+++ +..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999432 23599999999999999999999999999999999999995 89999999999865433 45678
Q ss_pred ceEEecCCC---cccc-ccHHHHHcCCCCC--C---CCCH----HHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCC
Q 016798 264 HVGLVSQDI---TLFS-GTVAENIGYRDLM--T---KIDM----ERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLS 329 (382)
Q Consensus 264 ~i~~v~Q~~---~lf~-~ti~eNi~~~~~~--~---~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lS 329 (382)
+++|++|++ .+|+ .|++||+.++... . ..+. +++.++++..++ .. ........||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LS 405 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV-----------KTASPFLPIGRLS 405 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCc-----------cCCCccCccccCC
Confidence 899999996 4665 5999999875210 0 0111 123333333332 21 1233457899
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 458 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIV 458 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999999988754 577764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=312.16 Aligned_cols=169 Identities=30% Similarity=0.441 Sum_probs=139.6
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC--CceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-c
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL--SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-T 278 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~--~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-t 278 (382)
+.+|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.. ..+++++||+|++.+|+. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 45999999999999999999999999999999999999885 8999999998742 356679999999999964 9
Q ss_pred HHHHHcCCCCC---CCCCHHH----HHHHHHHcChHHHHHhCCCCcccccCCC-CCCCChHHHHHHHHHHHccCCCCEEE
Q 016798 279 VAENIGYRDLM---TKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPR-GSSLSGGQRQRLAIARALYQNSSVLI 350 (382)
Q Consensus 279 i~eNi~~~~~~---~~~~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~-G~~lSgGq~QrialaRall~~~~ili 350 (382)
++||+.+.... ...++++ +.+.++..++ ++..||.+|+. ...||||||||++|||+|+.+|+|++
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 99999864211 1223332 2333333333 33458888764 68999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 351 LDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|||||++||+.++..+.+.|+++. +++|+|.
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~ 261 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999986 4788874
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=275.68 Aligned_cols=156 Identities=33% Similarity=0.461 Sum_probs=129.1
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCcc---ccccHHHHHcCC
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL---FSGTVAENIGYR 286 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l---f~~ti~eNi~~~ 286 (382)
|+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. ..+++++|++|++.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 346789999999986 457999999764
Q ss_pred CC-----C---CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCC
Q 016798 287 DL-----M---TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358 (382)
Q Consensus 287 ~~-----~---~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~L 358 (382)
.. . ...+++++.++++..++.++.+. ...+||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-----------PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 21 0 00122456667777776554433 34679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhC-CCceec
Q 016798 359 DSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 359 D~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|+.+.+.+.+.|+++.+ ++|+|+
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii 168 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILM 168 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999998864 678764
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=292.17 Aligned_cols=183 Identities=34% Similarity=0.415 Sum_probs=151.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc-ce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR-HV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~-~i 265 (382)
-++++|++++|++- ++|+||||++++||++||+|+||||||||+|+|+|.|+|++|+|.+||.++.-.++.+-++ -|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 48899999999863 6999999999999999999999999999999999999999999999999998777776554 59
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCC----CCHHHHHHHHHHcChHHHHHhCC--CCcccccCCCCCCCChHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTK----IDMERVEHTARTANADEFVRTLP--QGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~----~~~~~~~~~~~~~~l~~~i~~lp--~Gldt~vge~G~~lSgGq~Qrial 338 (382)
+.|.||..|++. ||.|||.+|+.... .+..+..+..+. .+..+- ...++++ .+||+||||.++|
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~~~~~v----~~LsiaqrQ~VeI 156 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDIDPDTLV----GDLSIAQRQMVEI 156 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCChhhhh----hhCCHHHHHHHHH
Confidence 999999999965 99999998875322 233333322221 222221 1245555 5899999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCcee
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVR 380 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI 380 (382)
|||+..+++|+|||||||+|+....+.+.+.+++++ ++.++|
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii 199 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAII 199 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999999999999999999999997 466665
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=311.18 Aligned_cols=173 Identities=29% Similarity=0.386 Sum_probs=142.8
Q ss_pred CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEeCCCCCHHHHhcceEEecCCCccccc
Q 016798 201 MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277 (382)
Q Consensus 201 ~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 277 (382)
++++|+|+|+++++||.+||+||||||||||+++|+|..+|. +|+|.+||.++. ...+|+.++||+|++.+|+.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 457999999999999999999999999999999999999885 799999999875 35678899999999999955
Q ss_pred -cHHHHHcCCCCCC---CCCHHHHHHHHHHcChHHHHHh--CCCCcccccCCC--CCCCChHHHHHHHHHHHccCCCCEE
Q 016798 278 -TVAENIGYRDLMT---KIDMERVEHTARTANADEFVRT--LPQGYNTHIGPR--GSSLSGGQRQRLAIARALYQNSSVL 349 (382)
Q Consensus 278 -ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~i~~--lp~Gldt~vge~--G~~lSgGq~QrialaRall~~~~il 349 (382)
||+||+.++.... ..+.++. ....++.++. +++..||.+|+. +..||||||||++|||+|+.+|+++
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 9999998753211 1222221 1112333333 345679999985 4899999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 350 ILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 350 ilDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+||||||+||+.+...+.+.|+++.+ ++|+|.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~ 221 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIIC 221 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999864 678763
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=254.14 Aligned_cols=136 Identities=48% Similarity=0.769 Sum_probs=125.0
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHH
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI 283 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi 283 (382)
|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.+|++ |++||.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999999999999999999999998888999999999999999987 699991
Q ss_pred cCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCC
Q 016798 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts 356 (382)
.++++.++++..++.+ ..++.++.+...||||||||++||||++++|+++||||||+
T Consensus 81 ---------~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 ---------SDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ---------HHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ---------cccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 3667888888887754 35677888889999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=331.14 Aligned_cols=184 Identities=25% Similarity=0.379 Sum_probs=153.8
Q ss_pred cEEEEeEEEEeCC--CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC---CCCceEEEcCEeCCCCCHHHH
Q 016798 187 DVKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~--~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 261 (382)
.++++||+++|+. +.+.+|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|.+||.++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 3789999999962 23569999999999999999999999999999999999998 68899999999984 247
Q ss_pred hcceEEecCCCcc-ccccHHHHHcCCCCC---CCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 262 RRHVGLVSQDITL-FSGTVAENIGYRDLM---TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 262 r~~i~~v~Q~~~l-f~~ti~eNi~~~~~~---~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
|+.++||+|++.+ +..|++||+.++... ...++ +.+.++++..++.+ -.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 8899999999765 466999999864211 11233 23455666665543 468899998899999999
Q ss_pred HHHHHHHHccCCCC-EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 334 QRLAIARALYQNSS-VLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~-ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||++|||||+.+|+ ||+||||||+||+.+...+++.|+++. +++|+|.
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~ 957 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999997 999999999999999999999999984 5688774
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=331.52 Aligned_cols=184 Identities=19% Similarity=0.298 Sum_probs=154.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
.-|+++|++++|+++...+|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++.. +....|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 3599999999997533569999999999999999999999999999999999999999999999999865 455678899
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
||+||++.+++. |++||+.+.....+.+. +.+.++++.+++.++.++. ...||||||||+++||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~-----------~~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRL-----------AGTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999864 99999975321112222 2344567777776655443 4789999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||+.+|+|++|||||+|||+.+++.+.+.|+++. +++|+|.
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIIL 2125 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVL 2125 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999975 4678764
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=275.56 Aligned_cols=156 Identities=23% Similarity=0.307 Sum_probs=125.8
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCcccc-ccHH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVA 280 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~ 280 (382)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +++++|++.+++ .|++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcHH
Confidence 35899999999999999999999999999999999999999999999984 456788877764 5999
Q ss_pred HHHcCCCCCCCCCHHHHH----HHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCC
Q 016798 281 ENIGYRDLMTKIDMERVE----HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~----~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts 356 (382)
||+.++......+.++.. .+++..++.++ +......||||||||++||||++.+|++|||||||+
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~ 172 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEF-----------IYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALS 172 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccc
Confidence 999764211122333332 33444444433 334567999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 357 ALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 357 ~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+||+.+.+.+.+.|.++. .++|+|+
T Consensus 173 gLD~~~~~~l~~~L~~~~~~g~tiIi 198 (264)
T PRK13546 173 VGDQTFAQKCLDKIYEFKEQNKTIFF 198 (264)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999998875 3677764
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=277.90 Aligned_cols=176 Identities=26% Similarity=0.327 Sum_probs=137.8
Q ss_pred eEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE-----------EcCEeCCCCCHHH
Q 016798 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-----------VDDHDVQNIRLDS 260 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~-----------~~g~~~~~~~~~~ 260 (382)
+|+|+|+.+ ..+|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. ++|.++.+.....
T Consensus 5 ~~~~~y~~~-~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 5 EPVHRYGPN-SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred CcceeecCc-chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 789999753 358999994 999999999999999999999999999999999996 8888886654333
Q ss_pred Hhc--ceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 261 LRR--HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 261 ~r~--~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
.+. .+++++|++.+++.++.+|+...-.. ....+.+.++++..++.+ .+.....+||||||||++|
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKK-KDERGKLDELVDQLELRH-----------VLDRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhch-hHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHH
Confidence 332 47888888877765555555432111 112344555565555443 3444567999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIi 194 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLV 194 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999998864 577764
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=302.82 Aligned_cols=181 Identities=25% Similarity=0.382 Sum_probs=142.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH-HHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i 265 (382)
-++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 488999984 379999999999999999999999999999999999999999999999998766543 456789
Q ss_pred EEecCCC---cccc-ccHHHHHcCCCCC--CC----CCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHH
Q 016798 266 GLVSQDI---TLFS-GTVAENIGYRDLM--TK----IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQ 334 (382)
Q Consensus 266 ~~v~Q~~---~lf~-~ti~eNi~~~~~~--~~----~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~Q 334 (382)
+||+|++ .+|. .|++||+.++... .. .+.++.. ..+.++++.+ |+. .........|||||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ-----QAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH-----HHHHHHHHhc--CCCCCCccCchhhCCHHHHH
Confidence 9999997 3554 5999999764210 00 1111111 1122334433 332 2344556789999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii 450 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIIL 450 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999999999999863 677764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=301.60 Aligned_cols=182 Identities=25% Similarity=0.354 Sum_probs=141.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH-HHHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 265 (382)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...++++
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 4889999742 38999999999999999999999999999999999999999999999999865433 3456789
Q ss_pred EEecCCCc---ccc-ccHHHHHcCCCCCC----C--CCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHH
Q 016798 266 GLVSQDIT---LFS-GTVAENIGYRDLMT----K--IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQ 334 (382)
Q Consensus 266 ~~v~Q~~~---lf~-~ti~eNi~~~~~~~----~--~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~Q 334 (382)
+|++|++. +|. .|+.||+.++.... . .+..+. .....+++..+ |++ ........+|||||||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHHH
Confidence 99999973 564 69999998653110 0 011110 01122334333 332 2233445799999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++||||++.+|++|||||||++||..+.+.+.+.|+++.+ +.|+|+
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 451 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLF 451 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999988764 577764
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=273.82 Aligned_cols=182 Identities=28% Similarity=0.438 Sum_probs=145.7
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-C----CCceEEEcCEeCCCCCHHH
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-P----LSGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-~----~~G~i~~~g~~~~~~~~~~ 260 (382)
++++|++..|.... ..+++||||+|++||++||||+|||||||+.+.|+|+++ | .+|+|.++|.|+..++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899998887532 468999999999999999999999999999999999998 4 5799999999999999875
Q ss_pred ---Hh-cceEEecCCCcc-c-cc-cHHHHH----cCCCCC--CCCCHHHHHHHHHHcChHH---HHHhCCCCcccccCCC
Q 016798 261 ---LR-RHVGLVSQDITL-F-SG-TVAENI----GYRDLM--TKIDMERVEHTARTANADE---FVRTLPQGYNTHIGPR 324 (382)
Q Consensus 261 ---~r-~~i~~v~Q~~~l-f-~~-ti~eNi----~~~~~~--~~~~~~~~~~~~~~~~l~~---~i~~lp~Gldt~vge~ 324 (382)
+| +.|++|+|||.- | +. ||.+-+ ...... ...-.++..+.++.+++.+ .+++.|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 34 369999999862 3 22 555444 322110 0001345677788888764 445555
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
.+||||||||+.||-|++.+|++||.||||+|||..++.+|++.|+++.+ +.|+|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aii 208 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALI 208 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEE
Confidence 89999999999999999999999999999999999999999999999875 44554
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=284.58 Aligned_cols=186 Identities=32% Similarity=0.441 Sum_probs=154.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH-HHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i 265 (382)
.+++++++++||+ ..+.+||||+|++||+.||.|+||||||||+++|.|+|+|++|+|.+||+++.=-++. ..|..|
T Consensus 4 ~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 5899999999994 4689999999999999999999999999999999999999999999999998765555 556679
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCC---CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMT---KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
|+|.|++.|++. |+.|||.+|.+.. ..+..+..+. +.+..++. |++-...+...+||-|||||+.|-+|
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~-----i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-----IKELSERY--GLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHH-----HHHHHHHh--CCCCCccceeecCCcchhHHHHHHHH
Confidence 999999999977 9999999987421 1122222211 22233332 55555556678999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|+++|++||||||||-|-+.....+.+.++++. .++|+|.
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ 195 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIF 195 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999986 4788874
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=299.28 Aligned_cols=177 Identities=24% Similarity=0.378 Sum_probs=135.7
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|
T Consensus 2 l~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 789999999974 36999999999999999999999999999999999999999999999872 36999
Q ss_pred ecCCCccccc-cHHHHHcCCCCC--------------CCCCHH---HHHHHH----------HHcChHHHHHhCCCCccc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLM--------------TKIDME---RVEHTA----------RTANADEFVRTLPQGYNT 319 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~--------------~~~~~~---~~~~~~----------~~~~l~~~i~~lp~Gldt 319 (382)
++|++.+|.. |++||+.++... .....+ .+.+.. ....+.+.++.+ |++.
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~ 146 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPE 146 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCh
Confidence 9999988865 999999764210 000000 000000 001122333333 3332
Q ss_pred cc-CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HI-GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~v-ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.. .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++ .+.|+|+
T Consensus 147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiii 207 (530)
T PRK15064 147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMII 207 (530)
T ss_pred hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEE
Confidence 22 234579999999999999999999999999999999999999999999975 3677764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=298.89 Aligned_cols=182 Identities=26% Similarity=0.311 Sum_probs=142.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEEcCEeCCC-CCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQN-IRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~~g~~~~~-~~~~~~r~~ 264 (382)
-|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|++
T Consensus 260 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 260 RIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred eEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 5999999999974 3589999999999999999999999999999999999876 69999999987632 233346778
Q ss_pred eEEecCCCcccc---ccHHHHHcCCCC-----CCCCC---HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 265 VGLVSQDITLFS---GTVAENIGYRDL-----MTKID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 265 i~~v~Q~~~lf~---~ti~eNi~~~~~-----~~~~~---~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
++|++|++.++. .|+++++.++.. ..... .+++.++++..++.+. .......+||||||
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 407 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWGQQ 407 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHHHH
Confidence 999999987642 467777643210 00111 2344555555555430 22334578999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CC-cee
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HH-TVR 380 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~-TvI 380 (382)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+ ++ |+|
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tvi 456 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLL 456 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEE
Confidence 999999999999999999999999999999999999999864 34 455
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=248.29 Aligned_cols=122 Identities=35% Similarity=0.560 Sum_probs=113.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.+||. ..++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 4689999999753 5999999999999999999999999999999999999999999999984 47999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
++| ||+||+||++||||++++|+
T Consensus 68 ~~~---------------------------------------------------------lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 68 FEQ---------------------------------------------------------LSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred Ecc---------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 998 99999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++||||||++||..+...+.+.++++ ++|+|+
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~ 122 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVIL 122 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEE
Confidence 99999999999999999999999987 356653
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=297.43 Aligned_cols=168 Identities=24% Similarity=0.342 Sum_probs=140.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++.++
T Consensus 319 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 385 (530)
T PRK15064 319 ALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANIG 385 (530)
T ss_pred eEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEEE
Confidence 5999999999975 3599999999999999999999999999999999999999999999987 24799
Q ss_pred EecCCCc--ccc-ccHHHHHcCCCCCCCCCHHHHHHHHHHcChH-HHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 267 LVSQDIT--LFS-GTVAENIGYRDLMTKIDMERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 267 ~v~Q~~~--lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
|++|++. +++ .|++||+.+... ...+++++.+.++..++. +..+ ....+||||||||++||||+
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQ-EGDDEQAVRGTLGRLLFSQDDIK-----------KSVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhcc-CCccHHHHHHHHHHcCCChhHhc-----------CcccccCHHHHHHHHHHHHH
Confidence 9999984 443 599999864321 112345666777777662 3332 33579999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+.+|++|||||||++||+.+...+.+.|+++ +.|+|+
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~ 490 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIF 490 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEE
Confidence 9999999999999999999999999999887 347764
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=288.49 Aligned_cols=171 Identities=25% Similarity=0.331 Sum_probs=137.0
Q ss_pred cEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 187 DVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
.++++|++|+|+++. +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 589999999997643 3689999999999999999999999999999999999999999999999752
Q ss_pred EEecCCCcccc-ccHHHHHcCCCCCCCCCHHH----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
++.+.+.+++ .|++||+.+.......+.++ +.++++.+++.++++. ....||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-----------~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-----------PVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------CcccCCHHHHHHHHHHH
Confidence 1222334443 49999997642111223332 3456666666655544 34789999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIII 198 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFF 198 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999998753 577764
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=300.33 Aligned_cols=178 Identities=24% Similarity=0.314 Sum_probs=137.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++|++++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..++
T Consensus 6 ~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG 73 (556)
T ss_pred EEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 58999999999722 4699999999999999999999999999999999999999999999874 24699
Q ss_pred EecCCCccccc-cHHHHHcCCCCC---------------CCCC---------HHHHHHHHHHc-------ChHHHHHhCC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLM---------------TKID---------MERVEHTARTA-------NADEFVRTLP 314 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~---------------~~~~---------~~~~~~~~~~~-------~l~~~i~~lp 314 (382)
||+|+|.+|+. |++||+.++... .... .+++.+.++.+ .+.+.++.+
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 152 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL- 152 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC-
Confidence 99999999865 999999764210 0000 01111111111 122233332
Q ss_pred CCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 315 ~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.|+++. .|+|+
T Consensus 153 -gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tvii 215 (556)
T PRK11819 153 -RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVA 215 (556)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEE
Confidence 332 2344567899999999999999999999999999999999999999999999873 47653
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=297.59 Aligned_cols=178 Identities=24% Similarity=0.290 Sum_probs=140.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++|++++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|+
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 48899999999732 3699999999999999999999999999999999999999999999874 24699
Q ss_pred EecCCCccccc-cHHHHHcCCCCC----------------CCCC--------HHHHHHHHHHcChH-------HHHHhCC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLM----------------TKID--------MERVEHTARTANAD-------EFVRTLP 314 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~----------------~~~~--------~~~~~~~~~~~~l~-------~~i~~lp 314 (382)
||+|+|.+|+. |++||+.++... .... .+++.++++.++.+ +.++.+
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 150 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL- 150 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC-
Confidence 99999998864 999999864210 0001 12344444444432 233333
Q ss_pred CCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 315 ~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.|+++. +|+|+
T Consensus 151 -~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIi 213 (552)
T TIGR03719 151 -RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVA 213 (552)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEE
Confidence 332 1344567999999999999999999999999999999999999999999998863 47653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=271.07 Aligned_cols=339 Identities=16% Similarity=0.214 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 016798 26 VIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQ-LIY 104 (382)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 104 (382)
+.+.+.+.+.+...++.+..+++...-.+...+.+.|--|+++..+....++..++..+...+.-....++..+.. +-+
T Consensus 242 i~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Y 321 (659)
T KOG0060|consen 242 INKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDY 321 (659)
T ss_pred HHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666777777788888888888888899999999998877766665555444332222111111111111 113
Q ss_pred HHHHHHHHHHHHHH----hCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc-----
Q 016798 105 FGALFILCGGSLLV----SGGSFDGCSLVSFITS----LVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSK----- 171 (382)
Q Consensus 105 ~~~~~~~~~g~~lv----~~g~~t~g~l~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~----- 171 (382)
++.++-.++-+.-+ ..+.++..++...+.. +..++..+..+.....++.+-.....||.++.+.-.+
T Consensus 322 lg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~ 401 (659)
T KOG0060|consen 322 LGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGS 401 (659)
T ss_pred HHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCC
Confidence 33222111100001 2345667776655433 3334455556666666666666667777765431110
Q ss_pred ---------ccC-------CCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHH
Q 016798 172 ---------VIE-------KPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235 (382)
Q Consensus 172 ---------~~~-------~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll 235 (382)
..+ .+......+....|++++|++.-|.+++.+++|+||+|+.|+.+.|.||||||||+|++.+
T Consensus 402 ~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvl 481 (659)
T KOG0060|consen 402 QECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVL 481 (659)
T ss_pred cchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHH
Confidence 000 0000111122357999999999987655677899999999999999999999999999999
Q ss_pred hhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCC-----CCCCCCHHHHHHHHHHcChHHHH
Q 016798 236 LRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRD-----LMTKIDMERVEHTARTANADEFV 310 (382)
Q Consensus 236 ~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~-----~~~~~~~~~~~~~~~~~~l~~~i 310 (382)
.|+++-.+|++.--...- -+.+-|+||.|+.-.||+||-+.|-. .....+|+++.+.++.+++.+.+
T Consensus 482 ggLWp~~~G~l~k~~~~~--------~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~ 553 (659)
T KOG0060|consen 482 GGLWPSTGGKLTKPTDGG--------PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL 553 (659)
T ss_pred hcccccCCCeEEecccCC--------CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH
Confidence 999999999997532110 03489999999999999999998752 12346789999999999999988
Q ss_pred HhCCCCcccccCCC-CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 311 RTLPQGYNTHIGPR-GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 311 ~~lp~Gldt~vge~-G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
++. +|+|+++--+ ...||+||+||+|+||-++.+|++-||||+|||+|.+.|..+.+.+++.
T Consensus 554 ~r~-ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 554 ERE-GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred HHh-CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 875 6999877544 7899999999999999999999999999999999999999999988875
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=287.92 Aligned_cols=185 Identities=25% Similarity=0.351 Sum_probs=148.3
Q ss_pred cEEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC----CceEEEcCEeCCCCCHHH
Q 016798 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL----SGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~----~G~i~~~g~~~~~~~~~~ 260 (382)
-++++|++..|.... ..+++||||+|.+||++||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 589999999887543 25899999999999999999999999999999999999987 799999999998888765
Q ss_pred Hh----cceEEecCCCc-cccc--cHHHHHc----CCCCC-CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCC
Q 016798 261 LR----RHVGLVSQDIT-LFSG--TVAENIG----YRDLM-TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (382)
Q Consensus 261 ~r----~~i~~v~Q~~~-lf~~--ti~eNi~----~~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~l 328 (382)
+| +.|+||+|+|. .++- ||.+-|. ..... .....++..+.++.+++.+-... .....+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 53 46999999997 4543 6666654 22111 11123455667777777554433 2234899
Q ss_pred ChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 329 SgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
|||||||+.||+||+.+|++||+||||++||..++.+|++.|+++.+ +-++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l 209 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVL 209 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEE
Confidence 99999999999999999999999999999999999999999999873 34444
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=293.80 Aligned_cols=184 Identities=17% Similarity=0.297 Sum_probs=141.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH-HHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i 265 (382)
-|+++|++++| +.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.+
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 58999999874 2489999999999999999999999999999999999999999999999999776544 346779
Q ss_pred EEecCCCc---ccc-ccHHHHHcCC-----CCCCC-CCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHH
Q 016798 266 GLVSQDIT---LFS-GTVAENIGYR-----DLMTK-IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQ 334 (382)
Q Consensus 266 ~~v~Q~~~---lf~-~ti~eNi~~~-----~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~Q 334 (382)
+|++|++. +|+ .|+.+|..+. ..... .+..+..+ ...++++.+ |+. -.......+|||||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCcHHHH
Confidence 99999963 565 4777763221 11001 11111111 122334433 221 1234556799999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|++||||++.+|+||||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~ 446 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIII 446 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999999999998875 4678774
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=294.43 Aligned_cols=181 Identities=24% Similarity=0.336 Sum_probs=141.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH-Hhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 265 (382)
-|+++|+++ .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|+.+
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 489999983 1699999999999999999999999999999999999999999999999998766554 45689
Q ss_pred EEecCCC---ccccc-cHHHHHcCCC---CCCCCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHHHHH
Q 016798 266 GLVSQDI---TLFSG-TVAENIGYRD---LMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 266 ~~v~Q~~---~lf~~-ti~eNi~~~~---~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~Qria 337 (382)
+|+||++ .+|.. |+.||+.... ........+.. ..+.++++.+ |+. .........||||||||++
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHHH
Confidence 9999996 36654 9999985320 00000111111 1122334443 343 2344556789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIi 458 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF 458 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999998854 677764
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=264.26 Aligned_cols=146 Identities=35% Similarity=0.507 Sum_probs=128.8
Q ss_pred cEEEEeEEEEeCCCC-------CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH
Q 016798 187 DVKFCNISFKYADNM-------PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~-------~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~ 259 (382)
-++++|+++.|+... ..+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|.++|.++..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478899999997532 25899999999999999999999999999999999999999999999999987665
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHH-HHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~-~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
+ ..-.+++.+.++.+++.+ +..+.| .+||||||||++|
T Consensus 82 --------------------~----------~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~I 120 (268)
T COG4608 82 --------------------K----------EERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGI 120 (268)
T ss_pred --------------------h----------hHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHH
Confidence 1 112567889999999865 666666 7999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
||||+.+|+++++|||||+||...+.+|.+.++++.+
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~ 157 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE 157 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988764
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=244.09 Aligned_cols=176 Identities=33% Similarity=0.488 Sum_probs=150.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC--CCC----CHHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV--QNI----RLDS 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~--~~~----~~~~ 260 (382)
.|++++++|.|+.. .+|-||+|+-+.||++.+.||||+|||||++.|.=+--|.+|+..|.|... ++. ...+
T Consensus 2 sirv~~in~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEcccccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 58899999999764 689999999999999999999999999999999999999999999987643 332 2447
Q ss_pred HhcceEEecCCCccccc-cHHHHHcCCCC-CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 261 LRRHVGLVSQDITLFSG-TVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~-~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
+|+.+|+|+|..++++- |+.||+.-..- -.+.++ .+..+.++...+.++.++.| ..|||||+|
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqqq 148 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQ 148 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchhh
Confidence 89999999999999976 99999953210 011222 34456778888888888888 789999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
|+||||||+-+|++|++||||++||++-..++.+.|+++.+
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~ 189 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE 189 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999875
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=262.81 Aligned_cols=158 Identities=30% Similarity=0.448 Sum_probs=142.9
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC----CCHHHHhcceEEecCCCccccc-cHH
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----IRLDSLRRHVGLVSQDITLFSG-TVA 280 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~----~~~~~~r~~i~~v~Q~~~lf~~-ti~ 280 (382)
=+++|+.+.-.++||-|+||||||||+|+|+|+..|++|.|.+||.-+.+ +...--+++||||+||..||+- ||+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 36899998889999999999999999999999999999999999987644 3344457889999999999966 999
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCH
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~ 360 (382)
-|++||... .+.+++.++++..++.+.+++.| ..||||||||+||+|||+.+|++|++|||.|+||.
T Consensus 95 gNL~YG~~~--~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 95 GNLRYGMWK--SMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred cchhhhhcc--cchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 999999753 35678889999999999999988 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC
Q 016798 361 RSELLVRQAVDRLLGH 376 (382)
Q Consensus 361 ~~~~~i~~~l~~~~~~ 376 (382)
...++++-.|+++.++
T Consensus 162 ~RK~EilpylERL~~e 177 (352)
T COG4148 162 PRKREILPYLERLRDE 177 (352)
T ss_pred chhhHHHHHHHHHHHh
Confidence 9999999999998754
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=294.01 Aligned_cols=167 Identities=26% Similarity=0.342 Sum_probs=141.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-++++|++++|++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++ ..++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 4899999999964 25899999999999999999999999999999999999999999985 1599
Q ss_pred EecCCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 267 LVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 267 ~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
|+||++.++ +.|++||+.++..... ......++++..++.+..++. ..+||||||||++|||||+++
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~-----------~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLG-SSYYKSEIIKPLQLERLLDKN-----------VKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcC-hHHHHHHHHHHCCCHHHHhCC-----------cccCCHHHHHHHHHHHHHhcC
Confidence 999998864 6699999987532111 233456677777776554443 478999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|++|||||||++||..+...+.+.|+++.+ ++|+|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 509 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALV 509 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999854 577764
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=251.77 Aligned_cols=180 Identities=29% Similarity=0.445 Sum_probs=157.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||+++|+. +.+++++|++|++|++++++||||||||||+.+++|+.++++|+|.++|.++.+.+.+++.+.++.
T Consensus 2 I~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 678999999975 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccc-cccHHHHHcCCCC-C-----CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 268 VSQDITLF-SGTVAENIGYRDL-M-----TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 268 v~Q~~~lf-~~ti~eNi~~~~~-~-----~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+-|+.++- .-||+|=+.||+- + +..+...+.++++-..+.+.-++. -.+||||||||.-+|.
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----------Ld~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----------LDELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh-----------HHhcccchhhhhhhhe
Confidence 99999986 4499999999862 1 122344566777777766544332 2589999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
.+.++.+.++||||.++||.+....+++.|+++.+ +||++
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktiv 190 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIV 190 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEE
Confidence 99999999999999999999999999999998875 67776
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=244.99 Aligned_cols=133 Identities=47% Similarity=0.723 Sum_probs=123.5
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEec
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 269 (382)
++|++|.|++. ++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+.....++++++|++
T Consensus 2 ~~~~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 68999999753 6999999999999999999999999999999999999999999999999998777777888999999
Q ss_pred CCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEE
Q 016798 270 QDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVL 349 (382)
Q Consensus 270 Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~il 349 (382)
| |||||+||++||||++.+|+++
T Consensus 80 q---------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 80 Q---------------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred e---------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 9 9999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHhCC-Cceec
Q 016798 350 ILDEATSALDSRSELLVRQAVDRLLGH-HTVRE 381 (382)
Q Consensus 350 ilDEpts~LD~~~~~~i~~~l~~~~~~-~TvI~ 381 (382)
+|||||++||.++...+.+.++++.++ +|++.
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~ 135 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVII 135 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999987653 67653
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=291.62 Aligned_cols=170 Identities=27% Similarity=0.346 Sum_probs=136.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ + ..|+
T Consensus 322 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~ 388 (552)
T TIGR03719 322 VIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLA 388 (552)
T ss_pred EEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEE
Confidence 5999999999975 3699999999999999999999999999999999999999999999854 2 1599
Q ss_pred EecCCCc-ccc-ccHHHHHcCCCCCCCCC--HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 267 LVSQDIT-LFS-GTVAENIGYRDLMTKID--MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 267 ~v~Q~~~-lf~-~ti~eNi~~~~~~~~~~--~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
|++|++. +++ .|++||+.++....... +.+..++++..++.+. ........||||||||++||||+
T Consensus 389 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~al 458 (552)
T TIGR03719 389 YVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKTL 458 (552)
T ss_pred EEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHH
Confidence 9999974 664 59999998753211111 2223334444443211 12334578999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+.+|++|||||||++||+.+...+.+.|+++. .|+|+
T Consensus 459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~vii 495 (552)
T TIGR03719 459 KSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVV 495 (552)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEE
Confidence 99999999999999999999999999999873 36653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=290.85 Aligned_cols=169 Identities=30% Similarity=0.358 Sum_probs=135.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..++
T Consensus 324 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~ 390 (556)
T PRK11819 324 VIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLA 390 (556)
T ss_pred EEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEE
Confidence 5999999999975 3599999999999999999999999999999999999999999999854 2 1599
Q ss_pred EecCCC-cccc-ccHHHHHcCCCCCCCC--CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 267 LVSQDI-TLFS-GTVAENIGYRDLMTKI--DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 267 ~v~Q~~-~lf~-~ti~eNi~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
|++|++ .++. .|++||+.++...... .+.+...+++..++.+. ........||||||||++||||+
T Consensus 391 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~la~al 460 (556)
T PRK11819 391 YVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG----------DQQKKVGVLSGGERNRLHLAKTL 460 (556)
T ss_pred EEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHH
Confidence 999997 5665 4999999875321111 12233344544444211 12334478999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
+.+|++|||||||++||+.+...+.+.|+++. + |+|
T Consensus 461 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-tvi 496 (556)
T PRK11819 461 KQGGNVLLLDEPTNDLDVETLRALEEALLEFP-G-CAV 496 (556)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC-C-eEE
Confidence 99999999999999999999999999999873 3 655
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=259.02 Aligned_cols=154 Identities=23% Similarity=0.305 Sum_probs=120.4
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE-EcCEeCCCCCHHHHhcceEEecCCCccccc-cHHH
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAE 281 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~-~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~e 281 (382)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 68999999999999999999999999999999999999999997 776532 13456778876 9999
Q ss_pred HHcCCCCCCCCCHHHHHHHH-HHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCH
Q 016798 282 NIGYRDLMTKIDMERVEHTA-RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (382)
Q Consensus 282 Ni~~~~~~~~~~~~~~~~~~-~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~ 360 (382)
|+.+.....+.+.++..+.+ +.. .+++.+++.+ ..||||||||++||||++.+|+++||||||+++|+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLT-------QLEQCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh-------ChhHHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 99764221123334433322 222 2333344443 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCceec
Q 016798 361 RSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 361 ~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+++.+.+.+.+..+++|+|.
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~ 158 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIV 158 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEE
Confidence 999999998866555677653
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=275.30 Aligned_cols=149 Identities=38% Similarity=0.524 Sum_probs=123.8
Q ss_pred EECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHHcCCCCCCCCCH----
Q 016798 220 LIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM---- 294 (382)
Q Consensus 220 ivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~---- 294 (382)
|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++|++|++.+|+. |++||+.++......+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999977654 36789999999999975 99999987632111222
Q ss_pred HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 295 ~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
+++.++++..++.++.++. ..+||||||||++|||||+++|+++||||||++||+.+...+.+.|+++.
T Consensus 79 ~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRK-----------PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhcCC-----------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 3455666666665554443 47899999999999999999999999999999999999999999999876
Q ss_pred C--CCceec
Q 016798 375 G--HHTVRE 381 (382)
Q Consensus 375 ~--~~TvI~ 381 (382)
+ ++|+|+
T Consensus 148 ~~~g~tiii 156 (325)
T TIGR01187 148 EQLGITFVF 156 (325)
T ss_pred HhcCCEEEE
Confidence 4 577764
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=294.11 Aligned_cols=169 Identities=28% Similarity=0.372 Sum_probs=135.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|+
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 4899999999975 35999999999999999999999999999999999999999999998 4322 599
Q ss_pred EecCCC-ccccc-cHHHHHcCCCCCCCCC--HHHHHHHHHHcChH-HHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDI-TLFSG-TVAENIGYRDLMTKID--MERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~-~lf~~-ti~eNi~~~~~~~~~~--~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
|++|++ .+++. |+.||+.++......+ ..++...++..++. +.. ......||||||||++||||
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRA-----------MTPVKALSGGERNRLLLARL 454 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHH-----------hChhhhCCHHHHHHHHHHHH
Confidence 999986 46654 9999998653211111 23344445544442 122 22346899999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
++.+|++|||||||++||..+...+.+.|+++ +.|+|+
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~ 492 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLL 492 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEE
Confidence 99999999999999999999999999999886 347663
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=265.52 Aligned_cols=179 Identities=32% Similarity=0.403 Sum_probs=148.4
Q ss_pred CcEEEEeEEEEeCCC---------CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC
Q 016798 186 GDVKFCNISFKYADN---------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI 256 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~---------~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~ 256 (382)
.-++.+||...|+-. ...++++|||++++||++||||+||||||||-..|+++.++. |+|.++|.++..+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 358999998888642 124689999999999999999999999999999999999776 9999999999988
Q ss_pred CHHHH---hcceEEecCCCc--cc-cccHHHHHcCCCCCC--CCC----HHHHHHHHHHcChHHHH-HhCCCCcccccCC
Q 016798 257 RLDSL---RRHVGLVSQDIT--LF-SGTVAENIGYRDLMT--KID----MERVEHTARTANADEFV-RTLPQGYNTHIGP 323 (382)
Q Consensus 257 ~~~~~---r~~i~~v~Q~~~--lf-~~ti~eNi~~~~~~~--~~~----~~~~~~~~~~~~l~~~i-~~lp~Gldt~vge 323 (382)
+.+++ |+++-+|+|||+ |- ..||.+-|.-|..-+ ..+ ++++.++++.+|++.-. .+.
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RY---------- 423 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRY---------- 423 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcC----------
Confidence 87654 688999999998 33 348888876543211 112 45677888888887533 344
Q ss_pred CCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC
Q 016798 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~ 376 (382)
...+|||||||||||||+.-+|++++||||||+||..-+.+|.+.|+++.++
T Consensus 424 -PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k 475 (534)
T COG4172 424 -PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK 475 (534)
T ss_pred -CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999987643
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=310.61 Aligned_cols=185 Identities=27% Similarity=0.367 Sum_probs=151.4
Q ss_pred cEEEEeEEEEeCC-----------CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC--CCceEEEcCEeC
Q 016798 187 DVKFCNISFKYAD-----------NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDV 253 (382)
Q Consensus 187 ~i~~~~v~f~y~~-----------~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G~i~~~g~~~ 253 (382)
.++++||+|..+. +...+|+|||+++++|+++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999998752 123689999999999999999999999999999999999874 789999999886
Q ss_pred CCCCHHHHhcceEEecCCCcccc-ccHHHHHcCCCC---CCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCC
Q 016798 254 QNIRLDSLRRHVGLVSQDITLFS-GTVAENIGYRDL---MTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRG 325 (382)
Q Consensus 254 ~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~~---~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G 325 (382)
. ...+++.+|||+|++.+++ .|++||+.+... ....+.+ .++++++..++.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 2456778999999998776 499999976421 0122322 35567777776543 366777554
Q ss_pred -CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 326 -SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 326 -~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
..||||||||++|||+|+.+|++|+||||||+||+.+...+.+.|+++.+ ++|+|.
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~ 1074 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1074 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 68999999999999999999999999999999999999999999999864 678763
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=247.24 Aligned_cols=122 Identities=30% Similarity=0.367 Sum_probs=109.7
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecC
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ 270 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q 270 (382)
.|++++|++ ..++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++|
T Consensus 4 ~~l~~~~~~--~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q 68 (177)
T cd03222 4 PDCVKRYGV--FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQ 68 (177)
T ss_pred CCeEEEECC--EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcc
Confidence 488999965 357888 49999999999999999999999999999999999999999853 788888
Q ss_pred CCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEE
Q 016798 271 DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350 (382)
Q Consensus 271 ~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ili 350 (382)
++. ||||||||++||||++.+|++++
T Consensus 69 ~~~------------------------------------------------------LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 69 YID------------------------------------------------------LSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred cCC------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 653 99999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHhC-C-Cceec
Q 016798 351 LDEATSALDSRSELLVRQAVDRLLG-H-HTVRE 381 (382)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~~~-~-~TvI~ 381 (382)
|||||++||+.+.+.+.+.++++.+ + +|+|+
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~~~~~~tiii 127 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV 127 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999998754 3 67663
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=251.34 Aligned_cols=182 Identities=21% Similarity=0.405 Sum_probs=155.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.+++++|+.+|++. .+++|+||++++|++.+++|||||||||.+++|+|+++|++|+|.++|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 47899999999763 59999999999999999999999999999999999999999999999999864 4577899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
|+|.+--|++. |+.|-+.|.....+++..++..- ++.|++++. .--.-...-..||-|.+|+|-+.-|++++
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~--i~~~~~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLE--IVGKKTKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcc--ccccccchHHHhhhhhhHHHHHHHHHhcC
Confidence 99999999955 99999987655556666665443 345676653 22223345679999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|+++|||||+|||||.+.+.+.+.+.+++ ++.|+|+
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIif 185 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIF 185 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999987 4788875
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=233.58 Aligned_cols=169 Identities=30% Similarity=0.438 Sum_probs=144.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEeCCCCCHHHHhc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r~ 263 (382)
-+.++||+.+-++. -.|-|+||+|.+||++-|.||||||||||+.-+.|.+.++ +|++.+|++++..++.. ++
T Consensus 2 ~l~l~nvsl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QR 77 (213)
T ss_pred ceeeeeeeecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hh
Confidence 36789999888764 5899999999999999999999999999999999999884 79999999999987754 78
Q ss_pred ceEEecCCCccccc-cHHHHHcCCCCCCC---CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~---~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
++|+++||+.+|+- +|.+|+.|.-|..- .-......++++.+++.+..+-| .+||||||.|++|-
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~ 146 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALL 146 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHH
Confidence 99999999999977 99999998755211 11234556788888888777766 79999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHH
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAV 370 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l 370 (382)
|+|+..|+.++||||+|.||..-+.++.+-.
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wV 177 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWV 177 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHH
Confidence 9999999999999999999998666655543
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=286.73 Aligned_cols=167 Identities=25% Similarity=0.356 Sum_probs=136.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 5999999999974 35999999999999999999999999999999999999999999999741 2699
Q ss_pred EecCCC--cccc-ccHHHHHcCCCCCCCCCHHHHHHHHHHcChH-HHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 267 LVSQDI--TLFS-GTVAENIGYRDLMTKIDMERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 267 ~v~Q~~--~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~-~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
|++|++ .++. .|+.+++....+ ....+++...++..++. +... .....||||||||++|||++
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGekqRl~La~~l 445 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAP--QELEQKLRDYLGGFGFQGDKVT-----------EETRRFSGGEKARLVLALIV 445 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCc--hhhHHHHHHHHHHcCCChhHhc-----------CchhhCCHHHHHHHHHHHHH
Confidence 999985 3443 388888742111 12345556666666653 2222 23478999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+.+|++|||||||++||+.+...+.+.|+++ + .|+|+
T Consensus 446 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~ 482 (638)
T PRK10636 446 WQRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVV 482 (638)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEE
Confidence 9999999999999999999999999999987 3 47764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=288.25 Aligned_cols=170 Identities=24% Similarity=0.354 Sum_probs=135.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
.-|+++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 359999999999643 3589999999999999999999999999999999999999999999865 2469
Q ss_pred EEecCCCccccccHHHHHc--CCCCCCCCCHHHHHHHHHHcChHH-HHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 266 GLVSQDITLFSGTVAENIG--YRDLMTKIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~--~~~~~~~~~~~~~~~~~~~~~l~~-~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+|++|++. ...++.+|.. +.......+++++.++++..++.+ ... .....||||||||++||||+
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~-----------~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----------QPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhc-----------CCccccCHHHHHHHHHHHHH
Confidence 99999873 2234555532 111111234667777888877753 222 23478999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+.+|++|||||||++||+.+...+.+.+.+. + .|+|+
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIi 679 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLM 679 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEE
Confidence 9999999999999999999999999999876 3 37663
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=289.56 Aligned_cols=172 Identities=27% Similarity=0.310 Sum_probs=138.7
Q ss_pred eEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE-----------EcCEeCCCCCHH-
Q 016798 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-----------VDDHDVQNIRLD- 259 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~-----------~~g~~~~~~~~~- 259 (382)
+++++|+.+ ..+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. ++|.++.++..+
T Consensus 78 ~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 378999753 35899999 8999999999999999999999999999999999997 899888654221
Q ss_pred -HHhcc----eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 260 -SLRRH----VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 260 -~~r~~----i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
..+.+ +.+++|.|.+|.+|++||+.... ..+++.++++..++.+..+ ....+|||||||
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~-----~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~q 219 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD-----ERGKLDEVVERLGLENILD-----------RDISELSGGELQ 219 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh-----HHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHH
Confidence 11122 44556677788889999996421 2345666777766654332 334689999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||++++|++||||||||+||+.+...+.+.|+++.+++|+|+
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIi 266 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLV 266 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999999999999876777764
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-32 Score=238.66 Aligned_cols=174 Identities=24% Similarity=0.366 Sum_probs=147.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
++.+|++..-+ +..++.++||++.+||.+-|+||||||||||+++|+|+.+|++|+|.++|.++.... +++++.+-|
T Consensus 3 L~a~~L~~~R~--e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERG--ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY 79 (209)
T ss_pred chhhhhhhccC--cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence 34567665443 346899999999999999999999999999999999999999999999999988643 446788999
Q ss_pred ecCCCcccc-ccHHHHHcCCCCCCC-CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 268 VSQDITLFS-GTVAENIGYRDLMTK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 268 v~Q~~~lf~-~ti~eNi~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+.+.+-+=. .|++||+.|...... .+.+.++++++.+++..+. .+| ..+||.||++|+||||-++..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~-dlp----------~~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE-DLP----------VGQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccc-ccc----------hhhcchhHHHHHHHHHHHcCC
Confidence 999999864 499999987644222 3578999999999987643 333 368999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
+|++||||||++||.+.+..+...+.+...
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~ 178 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAA 178 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhc
Confidence 999999999999999999988888877654
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.9e-32 Score=244.03 Aligned_cols=177 Identities=27% Similarity=0.368 Sum_probs=146.3
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH-HHHhcc
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRH 264 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 264 (382)
.-|+++||+++|.+ +++|+|||++|++||.-+|+||||||||||+++++|.++|++|.+.+.|.....-+. .++|++
T Consensus 30 ~li~l~~v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 30 PLIELKNVSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred ceEEecceEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 45999999999975 469999999999999999999999999999999999999999999999999988777 899999
Q ss_pred eEEecCCCcc-c--cccHHHHHcCC------CCCCCCCHHHH---HHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 265 VGLVSQDITL-F--SGTVAENIGYR------DLMTKIDMERV---EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 265 i~~v~Q~~~l-f--~~ti~eNi~~~------~~~~~~~~~~~---~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
||+|+-+-+. | +.+++|-+.-| ......++++. ...++.+++.+. .+..-..||-||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l-----------a~r~~~~LS~Ge 176 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL-----------ADRPFGSLSQGE 176 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh-----------ccCchhhcCHhH
Confidence 9999976652 3 34788877522 21113444443 334444444443 334457999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
|||+-|||||+++|++|||||||++||....+.+.+.|.++..
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~ 219 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAA 219 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998864
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-32 Score=283.54 Aligned_cols=177 Identities=25% Similarity=0.349 Sum_probs=128.7
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||+++|++ ..+|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .++|
T Consensus 2 i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~ 68 (638)
T PRK10636 2 IVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAW 68 (638)
T ss_pred EEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEE
Confidence 789999999975 369999999999999999999999999999999999999999999998742 3788
Q ss_pred ecCCCccccccHHHHHcCCCCC-CCC-----------CHHHHH---HHHH-------HcChHHHHHhCCCCcc-cccCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLM-TKI-----------DMERVE---HTAR-------TANADEFVRTLPQGYN-THIGPR 324 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~-~~~-----------~~~~~~---~~~~-------~~~l~~~i~~lp~Gld-t~vge~ 324 (382)
++|++..+..|+.+++.-.... ... ....+. .... ...+.+.+..+ |+. ......
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~ 146 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERP 146 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCc
Confidence 8886544444555544211000 000 000000 0000 01122334433 443 223445
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
...||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tvii 201 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLIL 201 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEE
Confidence 6789999999999999999999999999999999999999999999876 356653
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-32 Score=240.78 Aligned_cols=172 Identities=30% Similarity=0.388 Sum_probs=146.2
Q ss_pred CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCc--cc-cc
Q 016798 201 MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT--LF-SG 277 (382)
Q Consensus 201 ~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf-~~ 277 (382)
++++|+++||+|++|+++-|+|.||||||||++.|+|-+.|++|+|.+||+|+..++.......++-|+|||- .+ +.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4579999999999999999999999999999999999999999999999999999999887788999999997 35 55
Q ss_pred cHHHHHcCCCCC---CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCc
Q 016798 278 TVAENIGYRDLM---TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (382)
Q Consensus 278 ti~eNi~~~~~~---~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEp 354 (382)
||.||+.+.... +..+.. ...-......+-+..+|.|++-.++.+-.-|||||||-++|+-|.++.|+||+|||-
T Consensus 98 TieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 999999764321 112211 112223345567889999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh
Q 016798 355 TSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 355 ts~LD~~~~~~i~~~l~~~~ 374 (382)
|++|||.+...|++.=.+.-
T Consensus 176 TAALDPkta~~vm~lT~kiV 195 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIV 195 (263)
T ss_pred hhcCCcchHHHHHHHHHHHH
Confidence 99999999998888765543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-32 Score=302.98 Aligned_cols=172 Identities=25% Similarity=0.286 Sum_probs=139.6
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC----CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY----DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 277 (382)
+.+|+|+|+++++||+++|+||||||||||+|+|+|.. .|.+|+|.+||.++.+.+ ..+|+.++||+|++.+|+.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35899999999999999999999999999999999986 578999999999886543 3457789999999988865
Q ss_pred -cHHHHHcCCCC----C---CCCCHHHH-----HHHHHHcChHHHHHhCCCCcccccCC-CCCCCChHHHHHHHHHHHcc
Q 016798 278 -TVAENIGYRDL----M---TKIDMERV-----EHTARTANADEFVRTLPQGYNTHIGP-RGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 278 -ti~eNi~~~~~----~---~~~~~~~~-----~~~~~~~~l~~~i~~lp~Gldt~vge-~G~~lSgGq~QrialaRall 343 (382)
|++||+.++.. . .+.+.++. +.+++..++ .+-.||.+|+ ....||||||||++||||++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 99999986421 0 01222222 123333333 3446788875 46789999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
.+|++++|||||++||+.+...+.+.|+++.+ ++|+|.
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999864 678764
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=278.21 Aligned_cols=186 Identities=35% Similarity=0.471 Sum_probs=154.8
Q ss_pred CcEEEEeEEEEeCCC---CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC---CCceEEEcCEeCCCCCHH
Q 016798 186 GDVKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~---~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~---~~G~i~~~g~~~~~~~~~ 259 (382)
.+++++|+++..++. .+.+|+|||.+++|||..||.||||||||||+++|+|..++ .+|+|.+||++ .+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence 468999999888765 36799999999999999999999999999999999999975 78999999954 3567
Q ss_pred HHhcceEEecCCCccccc-cHHHHHcCCCC---CCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCC-CCCCCCh
Q 016798 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDL---MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGP-RGSSLSG 330 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~---~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge-~G~~lSg 330 (382)
.+++..|||+||..+++. ||+|++.+... ....+ ++.++++++..++.+- -||.+|. +...+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~-------~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC-------ADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh-------ccceecCCCCCcccc
Confidence 789999999999999976 99999975421 11122 2445555555555422 4677874 3479999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|||+|+++|.-++.||+||+|||||||||+.+..++.+.|+++. ++||||.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~ 225 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVIC 225 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999986 5899884
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=268.95 Aligned_cols=177 Identities=33% Similarity=0.415 Sum_probs=135.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ +++++|+||++.+|+++||||+||||||||+|+|+|...|++|+|...+. -+++
T Consensus 3 ~i~~~~ls~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 4889999999964 46999999999999999999999999999999999999999999987641 2599
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHH------------------HHH-------cChHHHHHhCCCCcccc
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHT------------------ART-------ANADEFVRTLPQGYNTH 320 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~------------------~~~-------~~l~~~i~~lp~Gldt~ 320 (382)
|++|++.+.+. |++|.+..+......-..+.+.+ ... +.+...+..| |+...
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~ 147 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE 147 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc
Confidence 99999999966 99999876542100000111111 110 1122223332 22222
Q ss_pred cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 321 vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
...-.+||||||-|++|||||+.+|++|+|||||++||.++-..+.+.|.++. + |+|+
T Consensus 148 -~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tvii 205 (530)
T COG0488 148 -DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIV 205 (530)
T ss_pred -cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEE
Confidence 33347899999999999999999999999999999999999999999998764 4 7763
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=231.41 Aligned_cols=135 Identities=26% Similarity=0.289 Sum_probs=108.3
Q ss_pred CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHH
Q 016798 201 MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVA 280 (382)
Q Consensus 201 ~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 280 (382)
..++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. .. ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~----~~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PK----FSRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-cc----cccccEEEEhH----------
Confidence 356899999999999999999999999999999985 368999998752 11 12445788777
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC--CCEEEEeCcCCCC
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN--SSVLILDEATSAL 358 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~--~~ililDEpts~L 358 (382)
.++++..++.++ .+.....+||||||||++||||++++ |+++||||||++|
T Consensus 68 -----------------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 -----------------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred -----------------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 122333332111 24556789999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHh-CCCceec
Q 016798 359 DSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 359 D~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|+++.+.+.+.|+++. .++|+|+
T Consensus 121 D~~~~~~l~~~l~~~~~~g~tvIi 144 (176)
T cd03238 121 HQQDINQLLEVIKGLIDLGNTVIL 144 (176)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999876 4678764
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-31 Score=274.97 Aligned_cols=176 Identities=28% Similarity=0.318 Sum_probs=127.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 3789999999975 369999999999999999999999999999999999999999999998621 256
Q ss_pred EecCCCcc-ccccHHHHHcCCCC----------------CCCCCHHHHHHH------HH-------HcChHHHHHhCCCC
Q 016798 267 LVSQDITL-FSGTVAENIGYRDL----------------MTKIDMERVEHT------AR-------TANADEFVRTLPQG 316 (382)
Q Consensus 267 ~v~Q~~~l-f~~ti~eNi~~~~~----------------~~~~~~~~~~~~------~~-------~~~l~~~i~~lp~G 316 (382)
+++|++.. ..+++.+++..+.. ..+...+.+... +. ...+.+.+..+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 77776532 22455555421100 000000111000 00 01123334433 3
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 317 ldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+. .......||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvli 208 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIF 208 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEE
Confidence 32 134457899999999999999999999999999999999999999999998873 46653
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=296.15 Aligned_cols=177 Identities=22% Similarity=0.321 Sum_probs=138.9
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEeCCCCCHHHHhcceEEecCCCcccc-c
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-G 277 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ 277 (382)
..+|+|+|+.|++||+++|+||||||||||+|+|+|.++|+ +|+|.+||.++.+.. .|+.++||+|++.+|+ .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 35899999999999999999999999999999999999998 999999999987653 2678999999988775 5
Q ss_pred cHHHHHcCCCCCC----------CCCH----------HHHHHHHHH---cC------hHHHHHh--CCCCcccccCCC-C
Q 016798 278 TVAENIGYRDLMT----------KIDM----------ERVEHTART---AN------ADEFVRT--LPQGYNTHIGPR-G 325 (382)
Q Consensus 278 ti~eNi~~~~~~~----------~~~~----------~~~~~~~~~---~~------l~~~i~~--lp~Gldt~vge~-G 325 (382)
|++||+.++.... +.+. +++...++. .+ .++.++. |.+-.||.+|+. .
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999998642100 0011 111101111 00 1223333 344567888764 4
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
..||||||||++|||+++.+|++++|||||+|||+.+...+.+.|+++.+ ++|+|+
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tvii 392 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLM 392 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 78999999999999999999999999999999999999999999999853 678774
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=228.06 Aligned_cols=182 Identities=25% Similarity=0.335 Sum_probs=152.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CCCCceEEEcCEeCCCCCHHHHh-c
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDSLR-R 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~r-~ 263 (382)
-++++|++.+-.+. +.+|+++||+|++||+.+|.||||||||||.+.|+|.- ++++|+|.+||+||.++++++.. .
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 47899999988753 36999999999999999999999999999999999975 78999999999999999988764 4
Q ss_pred ceEEecCCCccccc-cHHHHHcCCCCC-CC------CCHHHHHHHHHHcChHH-HHHhCCCCcccccCCCCCCCChHHHH
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRDLM-TK------IDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~~~-~~------~~~~~~~~~~~~~~l~~-~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
-+.+-+|.|.=++| |+.+-++.+... +. ...+++.++++..++++ ++++ . + ...+|||||.
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R---~----v---N~GFSGGEkK 151 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER---Y----V---NEGFSGGEKK 151 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc---c----c---CCCcCcchHH
Confidence 69999999999988 999888633110 01 12456677888888876 3332 1 2 2579999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCce
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTV 379 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~Tv 379 (382)
|.-|+..++-+|++.|||||-|+||.++-+.|.+.+.+++. ++++
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~ 197 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGV 197 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeE
Confidence 99999999999999999999999999999999999999875 4443
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=227.21 Aligned_cols=181 Identities=25% Similarity=0.365 Sum_probs=154.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC-EeCCCCCHHHHhc-c
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD-HDVQNIRLDSLRR-H 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g-~~~~~~~~~~~r~-~ 264 (382)
-++++||+.+|++- .+|+|+||++.+||.-+|+||||+||||++..|.|-.+|+.|+|+++| .|+..++...+.+ -
T Consensus 5 iL~~~~vsVsF~GF--~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 5 ILYLDGVSVSFGGF--KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred eEEEeceEEEEcce--eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 57899999999764 589999999999999999999999999999999999999999999999 9999998877644 5
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCC------------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLM------------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~------------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
||-=+|.|..|.. ||+||+.+.... .....+++.+.+...++.+.... -...||.|
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~-----------~A~~LSHG 151 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR-----------LAALLSHG 151 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh-----------hhhhhccc
Confidence 9999999999976 999999643211 11123466777777776654433 35789999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
|||++.|+.-+.++|++|+||||++++-.+...+.-+.|+++.+.++++
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsil 200 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSIL 200 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEE
Confidence 9999999999999999999999999998888888999999998887765
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-30 Score=220.17 Aligned_cols=178 Identities=29% Similarity=0.418 Sum_probs=132.9
Q ss_pred cEEEEeEEEEeC----CC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE----eCCCCC
Q 016798 187 DVKFCNISFKYA----DN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH----DVQNIR 257 (382)
Q Consensus 187 ~i~~~~v~f~y~----~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~----~~~~~~ 257 (382)
.+.++|++++|. ++ .-|+++|+||+++.|||+.+=||||||||||++.|.+-|.|++|+|.+.-. |+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 367788876663 11 247999999999999999999999999999999999999999999998432 333333
Q ss_pred HH---HH-hcceEEecCCCcccc-ccHHHHHc-----CCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCC
Q 016798 258 LD---SL-RRHVGLVSQDITLFS-GTVAENIG-----YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (382)
Q Consensus 258 ~~---~~-r~~i~~v~Q~~~lf~-~ti~eNi~-----~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~ 327 (382)
+. +. |+.||||+|--...+ -+-.|-++ .|-+ .+...+.....+...++.+-+-+|| ...
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~-~~~a~~~a~~Ll~rLnlperLW~La----------PaT 152 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP-REVARAKAADLLTRLNLPERLWSLA----------PAT 152 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC-HHHHHHHHHHHHHHcCCCHHHhcCC----------Ccc
Confidence 22 23 456999999765433 24444432 2221 1111233344555566666555554 479
Q ss_pred CChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 328 lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
+||||+||+.|||+|+-|-+||+|||||++||..+.+.+.+.|++.+.
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka 200 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA 200 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=268.52 Aligned_cols=189 Identities=23% Similarity=0.286 Sum_probs=133.4
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC---CCCCceEEEcCEeCCC--CCH--
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY---DPLSGCILVDDHDVQN--IRL-- 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~---~~~~G~i~~~g~~~~~--~~~-- 258 (382)
..|+++|++|+|++. ++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++++.. .+.
T Consensus 176 ~~I~i~nls~~y~~~--~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 176 KDIHMENFSISVGGR--DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eeEEEceEEEEeCCC--EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 469999999999753 5999999999999999999999999999999999864 5889999876554321 111
Q ss_pred ----------HHHhcceEEecCCCccccccHHHHHcCCCCCCCCCH----HHHHHHHHHcCh----------HHHHHhCC
Q 016798 259 ----------DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANA----------DEFVRTLP 314 (382)
Q Consensus 259 ----------~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l----------~~~i~~lp 314 (382)
..+++.+++++|+|.+...+..+|..... ....+. +++.++++..++ .+.+..+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGAN-KDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhccccccccccc-ccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 11245588999988764444444432110 011111 223333332221 1223332
Q ss_pred CCccc-ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 315 QGYNT-HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 315 ~Gldt-~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++. .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tvii 396 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIV 396 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEE
Confidence 3321 122334789999999999999999999999999999999999999999999887 457663
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=217.93 Aligned_cols=175 Identities=29% Similarity=0.396 Sum_probs=134.7
Q ss_pred EEEEeEEEEeCC-------CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH
Q 016798 188 VKFCNISFKYAD-------NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 188 i~~~~v~f~y~~-------~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 260 (382)
++++|+|++|.. +...+++.|||++++|+++||+|.||||||||+|+|+|+.+|++|+|++||.++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 556777654432 1234789999999999999999999999999999999999999999999999997767666
Q ss_pred HhcceEEecCCCc-cccccHHHHHc--CCCC---CCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCCh
Q 016798 261 LRRHVGLVSQDIT-LFSGTVAENIG--YRDL---MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (382)
Q Consensus 261 ~r~~i~~v~Q~~~-lf~~ti~eNi~--~~~~---~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSg 330 (382)
..++|-+++|||. -|+ -|-||. +-.| .++.+ .+++.+.++.+|+ +|+--+- ....||.
T Consensus 85 R~k~IRMiFQDpnts~N--PRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL------~Pdhan~----~~~~la~ 152 (267)
T COG4167 85 RSKRIRMIFQDPNTSLN--PRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------LPDHANY----YPHMLAP 152 (267)
T ss_pred hhhheeeeecCCccccC--hhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhcc------Ccccccc----chhhcCc
Confidence 6678999999997 243 222321 0011 11122 3566677777776 3433222 2468999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
|||||+||||||.-+|+|+|.||+.++||..-+-++.+...++.
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQ 196 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQ 196 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888776654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-29 Score=236.52 Aligned_cols=181 Identities=30% Similarity=0.379 Sum_probs=144.7
Q ss_pred cEEEEeEEEEeC--CCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-----CCceEEEcCEeCCCCCHH
Q 016798 187 DVKFCNISFKYA--DNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~--~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-----~~G~i~~~g~~~~~~~~~ 259 (382)
-++++|+|..|. ++...++++|||+|++||++||||+||||||-.+..++|+++- .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 478899887775 3345789999999999999999999999999999999999964 479999999999998888
Q ss_pred HHhc----ceEEecCCCc--cccc-cH----HHHHcCCCCC-CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCC
Q 016798 260 SLRR----HVGLVSQDIT--LFSG-TV----AENIGYRDLM-TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (382)
Q Consensus 260 ~~r~----~i~~v~Q~~~--lf~~-ti----~eNi~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~ 327 (382)
.+|+ +|++++|+|. |=+- || .|-|.+.... ...-.+++.+.++.+++.+--. .+.....+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCcc
Confidence 7763 7999999997 2222 44 4444443221 1122456677888888754322 12234489
Q ss_pred CChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 328 lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
||||||||+.||-||+.+|++||-||||.+||...+.+|++.|+++.+
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~ 205 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA 205 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998864
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=246.60 Aligned_cols=166 Identities=32% Similarity=0.401 Sum_probs=140.8
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
.-++++|++++|+++ +.+++++||.|.+|+++|||||||+|||||+|+|+|...|.+|+|.++-. -++
T Consensus 320 ~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~i 387 (530)
T COG0488 320 LVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKI 387 (530)
T ss_pred eeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEE
Confidence 358999999999765 57999999999999999999999999999999999999999999997631 259
Q ss_pred EEecCCCc-cccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 266 GLVSQDIT-LFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 266 ~~v~Q~~~-lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
||.+|+.. ++.. |+.|++.-..+. ..+.++...|...++...-.. .....||||||-|+.||+.++
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~~~--~~e~~~r~~L~~f~F~~~~~~----------~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGFPD--GDEQEVRAYLGRFGFTGEDQE----------KPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhCcc--ccHHHHHHHHHHcCCChHHHh----------CchhhcCHhHHHHHHHHHHhc
Confidence 99999994 4533 899999765432 236788888888877543222 234689999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
.+|.+|||||||+.||.++...+.++|.++..
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~G 487 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDFEG 487 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999988753
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=227.37 Aligned_cols=334 Identities=18% Similarity=0.244 Sum_probs=228.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 016798 25 LVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKA---LIPQTVQ 101 (382)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 101 (382)
.+.+.+.++..+...+.....+.+...=+..+.+.++|-.|+..+.+..+.++.............+.+. +..++..
T Consensus 279 ~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~m 358 (728)
T KOG0064|consen 279 FILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVM 358 (728)
T ss_pred HHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777788888889999999999999999988888776654433222211111 1122111
Q ss_pred HHHHHH-HHHH-----HHHHHHHhCCCC-------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016798 102 LIYFGA-LFIL-----CGGSLLVSGGSF-------D-GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTK 167 (382)
Q Consensus 102 ~~~~~~-~~~~-----~~g~~lv~~g~~-------t-~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~ 167 (382)
-+.+. ..++ ++..-....+.. + ...+++.=.++......+..+...+.++.+-...-.|++++++
T Consensus 359 -KYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~ 437 (728)
T KOG0064|consen 359 -KYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFS 437 (728)
T ss_pred -HHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 01110 0000 000001111111 0 1123333333444456677778788888777777778776542
Q ss_pred C----c---------ccccCC------CCCCCCC-----CCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECC
Q 016798 168 F----K---------SKVIEK------PDAVSLD-----HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGP 223 (382)
Q Consensus 168 ~----~---------~~~~~~------~~~~~~~-----~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~ 223 (382)
. . ++..+. .++.+.+ .....|.++|+-.--|.++ .++..++|+|++|-.+.|.||
T Consensus 438 v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~-vvv~~Ltf~i~~G~hLLItGP 516 (728)
T KOG0064|consen 438 VLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGD-VLVPKLTFQIEPGMHLLITGP 516 (728)
T ss_pred HHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcc-eeecceeEEecCCceEEEECC
Confidence 1 0 000000 0011110 1123589999988777664 478999999999999999999
Q ss_pred CCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCC-----CCCCCHHHHH
Q 016798 224 SGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL-----MTKIDMERVE 298 (382)
Q Consensus 224 sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~-----~~~~~~~~~~ 298 (382)
||||||+|.++|.|++|.+.|...+- -+.+|-|+||.|+.=-||.||-|.|-+. ..+++|.++.
T Consensus 517 NGCGKSSLfRILggLWPvy~g~L~~P-----------~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~ 585 (728)
T KOG0064|consen 517 NGCGKSSLFRILGGLWPVYNGLLSIP-----------RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLE 585 (728)
T ss_pred CCccHHHHHHHHhccCcccCCeeecC-----------CCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHH
Confidence 99999999999999999888877642 1345999999999888899999987543 2357789999
Q ss_pred HHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 299 ~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
..++.+.++..+++ ..|+|.. .+=-.-||||||||+++||.++++|+..+|||+||++.++-|..+.++.++.
T Consensus 586 ~iL~~v~L~~i~qr-~~g~da~-~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~ 658 (728)
T KOG0064|consen 586 AILDIVHLEHILQR-EGGWDAV-RDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA 658 (728)
T ss_pred HHHHHhhHHHHHHh-ccChhhh-ccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc
Confidence 99999999876655 4566643 2334679999999999999999999999999999999999999999998775
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-28 Score=218.59 Aligned_cols=145 Identities=21% Similarity=0.258 Sum_probs=113.7
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCC---------ceEEEcCEeCCCCCHHHHhcceEEecCCCcccc
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS---------GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS 276 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~---------G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~ 276 (382)
+++++++++| +++|+||||||||||+++|+|+..|.. |++.++|.+... ...+++|++++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999986653 468888877643 22357899999999877
Q ss_pred ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc----CCCCEEEEe
Q 016798 277 GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY----QNSSVLILD 352 (382)
Q Consensus 277 ~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall----~~~~ililD 352 (382)
++.. ..+++.++++. ++-.+ .....||||||||++|||+++ .+|++++||
T Consensus 89 --------~~~~----~~~~~~~~l~~----------~~~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlD 142 (197)
T cd03278 89 --------YSII----SQGDVSEIIEA----------PGKKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLD 142 (197)
T ss_pred --------eeEE----ehhhHHHHHhC----------CCccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 2110 12344444444 11122 344789999999999999986 577999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 353 EATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 353 Epts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|||++||+.+...+.+.|+++.++.|+|+
T Consensus 143 EP~~~LD~~~~~~l~~~l~~~~~~~tiIi 171 (197)
T cd03278 143 EVDAALDDANVERFARLLKEFSKETQFIV 171 (197)
T ss_pred CCcccCCHHHHHHHHHHHHHhccCCEEEE
Confidence 99999999999999999999877777763
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-27 Score=217.55 Aligned_cols=171 Identities=28% Similarity=0.365 Sum_probs=125.2
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEec-CCCccc-cccH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS-QDITLF-SGTV 279 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~lf-~~ti 279 (382)
-++++||||+||+|++++++|+|||||||++|+|.|+..|++|.|.++|.+...-. +++-+++++|+ |...+. .-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~-~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRR-EEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhH-HHHHHHHHHHhhhhheeeeechh
Confidence 35899999999999999999999999999999999999999999999998876533 33334455543 333321 2223
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCC
Q 016798 280 AENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359 (382)
Q Consensus 280 ~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD 359 (382)
.|-+.......++++++..+-++ .+.+-| +++..+......||-|||-|.-||-||+++|+||+|||||=+||
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~-----~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLD 188 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLD-----FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD 188 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHH-----HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcc
Confidence 33332111111234444433221 222222 55666666778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC--CCcee
Q 016798 360 SRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 360 ~~~~~~i~~~l~~~~~--~~TvI 380 (382)
...+..|.+.+++... +.||+
T Consensus 189 V~aq~~ir~Flke~n~~~~aTVl 211 (325)
T COG4586 189 VNAQANIREFLKEYNEERQATVL 211 (325)
T ss_pred hhHHHHHHHHHHHHHHhhCceEE
Confidence 9999999999998753 45554
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-27 Score=220.18 Aligned_cols=173 Identities=24% Similarity=0.306 Sum_probs=117.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh----------------CCCCCCc------
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR----------------LYDPLSG------ 244 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g----------------~~~~~~G------ 244 (382)
.|+++|. .+|.+ ..++++++ |++++|+||||||||||+++|++ +..+.+|
T Consensus 3 ~i~~~nf-ksy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 3 QVIIQGF-KSYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEEeCc-cCccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 4677774 23653 34777776 89999999999999999999984 4445555
Q ss_pred --eEEEcCEeCCC-C--CHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHH--HhCCCC-
Q 016798 245 --CILVDDHDVQN-I--RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV--RTLPQG- 316 (382)
Q Consensus 245 --~i~~~g~~~~~-~--~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i--~~lp~G- 316 (382)
+|.+++.+-.. + +...+++.+++++|++.+++. ..+.+++...++..++...- ...|+|
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~-------------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~ 141 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK-------------NVTKNDVMNLLESAGFSRSNPYYIVPQGK 141 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe-------------EcCHHHHHHHHHHcCCCCCCCcEEEEcCc
Confidence 55555532111 0 122345667888877766542 12344455555554442210 001122
Q ss_pred ------cccccCCCCCCCChHHHHHHHHHHHcc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 317 ------YNTHIGPRGSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 317 ------ldt~vge~G~~lSgGq~QrialaRall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
++....+.+..||||||||++||||++ ++|+++||||||++||+.+.+.+.+.|+++.+++|+|
T Consensus 142 i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii 215 (243)
T cd03272 142 INSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFI 215 (243)
T ss_pred hHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 122345677899999999999999996 4689999999999999999999999999987766665
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=208.35 Aligned_cols=158 Identities=29% Similarity=0.372 Sum_probs=124.6
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (382)
.++|+||||++++||.+||||+||||||||+|+|+|.|+|++|+|.++|.--.-+.. .+|+-| +.|-||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCc------ccchHH
Confidence 468999999999999999999999999999999999999999999999853221111 133332 358999
Q ss_pred HHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCC
Q 016798 282 NIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357 (382)
Q Consensus 282 Ni~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~ 357 (382)
|+.+.......+ ++.+.+..+-+.|.+|++. | -.+.|.|++-|+|+|-|...+|+|||+||..+.
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-------P----vktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-------P----VKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-------c----hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 996422111223 3455566777788888753 3 379999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-hCCCceec
Q 016798 358 LDSRSELLVRQAVDRL-LGHHTVRE 381 (382)
Q Consensus 358 LD~~~~~~i~~~l~~~-~~~~TvI~ 381 (382)
.|+.=.++=.+.++++ .+++|+|.
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~ 202 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVL 202 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 9999888778888887 56777763
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-27 Score=253.02 Aligned_cols=180 Identities=25% Similarity=0.400 Sum_probs=154.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC-CHHHHhcc
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI-RLDSLRRH 264 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~-~~~~~r~~ 264 (382)
..+.++++++.|+.... +++++|+.|++||+.|+.|+|||||||+++++.|..+|++|++.++|.++... +....+++
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 46899999999987544 89999999999999999999999999999999999999999999999999764 44468999
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
+||+||+..+++. |.||++.+....++.. .+.++..++..++.+..+. + ...+|||+|+|+++|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-------~----~~~ySgG~kRkLs~a 710 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-------Q----VRTYSGGNKRRLSFA 710 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-------c----hhhCCCcchhhHHHH
Confidence 9999999999966 9999997532222222 2346677788887766543 2 469999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCC
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~ 377 (382)
-|++.+|++++|||||+|+||.+++.+++.+++.+++.
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998753
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-27 Score=200.43 Aligned_cols=177 Identities=23% Similarity=0.322 Sum_probs=132.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE-----eCCCCCHHHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH-----DVQNIRLDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~-----~~~~~~~~~~ 261 (382)
-++++++|..|++. .--+||||++.|||..+|||+||||||||+++|.+-+.|+.|+|.+... ++-.++..+.
T Consensus 6 LL~V~~lsk~Yg~~--~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCC--cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 57889999999864 4689999999999999999999999999999999999999999998653 3333443333
Q ss_pred ----hcceEEecCCCc--cc-cccHHHHH----c-CCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCC
Q 016798 262 ----RRHVGLVSQDIT--LF-SGTVAENI----G-YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (382)
Q Consensus 262 ----r~~i~~v~Q~~~--lf-~~ti~eNi----~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lS 329 (382)
|..-|+|.|+|. +- ..|--.|| . .|.. .+ -++. +...+|+++..-. .+.+.+....+|
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R--HY--G~iR-----~~a~~WL~~VEI~-~~RiDD~PrtFS 153 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR--HY--GNIR-----AEAQDWLEEVEID-LDRIDDLPRTFS 153 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhh--hh--hhHH-----HHHHHHHHhcccC-cccccCcccccc
Confidence 456899999995 21 11222333 1 1111 01 1111 1123455543322 245666779999
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
||++||+-|||-|...|+++++||||.+||..-+.++++.++.+..
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~ 199 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 199 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987753
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-26 Score=211.12 Aligned_cols=165 Identities=23% Similarity=0.309 Sum_probs=100.5
Q ss_pred CCCccceeeEEeeCCCEEEEECCCCCcHHHHH-HHHhhCCCCCCceEEEcC-------EeCC---CCCHHHHhc-ceEEe
Q 016798 201 MPLVLDQLNLHIRAGETVALIGPSGGGKSTLA-KLLLRLYDPLSGCILVDD-------HDVQ---NIRLDSLRR-HVGLV 268 (382)
Q Consensus 201 ~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~-~ll~g~~~~~~G~i~~~g-------~~~~---~~~~~~~r~-~i~~v 268 (382)
+.++|+|+||+|++||+++|+|+||||||||+ ..+. .+|++.+.+ ..+. .......+. ..++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 35699999999999999999999999999996 4442 134332210 0000 000011121 23444
Q ss_pred cCCCccc-c-c-c---HHHHHcCCCCC-CCCCHHHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCChHHHHHHHHHH
Q 016798 269 SQDITLF-S-G-T---VAENIGYRDLM-TKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 269 ~Q~~~lf-~-~-t---i~eNi~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lSgGq~QrialaR 340 (382)
.|++... + . + +.+...+.... ......+..+ .++.+ |+.. .......+||||||||++|||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgG~~qrv~lar 150 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLG---------FLVDV--GLGYLTLSRSAPTLSGGEAQRIRLAT 150 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHH---------HHHHC--CCCcccccCccCcCCHHHHHHHHHHH
Confidence 4444311 1 1 2 21221110000 0000111122 23332 3333 245567899999999999999
Q ss_pred HccCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 341 ALYQNS--SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 341 all~~~--~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|++.+| +++||||||++||+.+...+.+.|+++. .+.|+|+
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~ 194 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLV 194 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999998 5999999999999999999999999875 4667763
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-26 Score=209.60 Aligned_cols=169 Identities=17% Similarity=0.185 Sum_probs=121.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEee-CCCEEEEECCCCCcHHHHHHHHhh-CCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIR-AGETVALIGPSGGGKSTLAKLLLR-LYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~-~G~~~aivG~sGsGKSTl~~ll~g-~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
.|+++|+. +|.+. ++++|+.. +|++++|+||||||||||+++|.+ +|.+..+....+ .....+.....+..
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence 58889986 66542 56777654 599999999999999999999994 666666665543 12223333445677
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHH--HHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA--RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~--~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
|++++|++.-. ..+.++. ..+.+++.+.. +.. ++++.+...+.+||||||||++||||+
T Consensus 78 v~~~f~~~~~~----~~~~r~~----gl~~~~~~~~~~l~~g-----------~l~~~l~~~~~~lS~G~~~r~~la~al 138 (213)
T cd03279 78 VSFTFQLGGKK----YRVERSR----GLDYDQFTRIVLLPQG-----------EFDRFLARPVSTLSGGETFLASLSLAL 138 (213)
T ss_pred EEEEEEECCeE----EEEEEec----CCCHHHHHHhhhhhhc-----------chHHHhcCCccccCHHHHHHHHHHHHH
Confidence 99999998432 2222222 23445443322 222 244455666789999999999999999
Q ss_pred cC----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 343 YQ----------NSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 343 l~----------~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+. +|+++||||||++||+.+...+.+.++++.+ ++|+|.
T Consensus 139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~ 188 (213)
T cd03279 139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGV 188 (213)
T ss_pred HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 74 6789999999999999999999999998875 677763
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-25 Score=207.28 Aligned_cols=166 Identities=19% Similarity=0.209 Sum_probs=120.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCC-CceEEEcCE-eCCCCC--HHHHhcceEEecCCCc---------cc-cccHH
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDH-DVQNIR--LDSLRRHVGLVSQDIT---------LF-SGTVA 280 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~~g~-~~~~~~--~~~~r~~i~~v~Q~~~---------lf-~~ti~ 280 (382)
..+++||||||||||||+++|++++.|. .|++...|. ++-... ....+..+.+++|++. +. .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999999886 568888776 432111 1122458999999963 22 34888
Q ss_pred HHHcCCCCC------CCCCHHHHHHHHHHcChH--H--H------HHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc-
Q 016798 281 ENIGYRDLM------TKIDMERVEHTARTANAD--E--F------VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY- 343 (382)
Q Consensus 281 eNi~~~~~~------~~~~~~~~~~~~~~~~l~--~--~------i~~lp~Gldt~vge~G~~lSgGq~QrialaRall- 343 (382)
+|+..+... .....+++.++++.+++. + + +.++-+. .........+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 888654311 122456777888888763 0 0 0000000 02234456799999999999999997
Q ss_pred ---CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 344 ---QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 344 ---~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+|++++|||||++||+.+...+.+.|+++.++.|+|.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~ 224 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIV 224 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 68899999999999999999999999999877777663
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-25 Score=235.42 Aligned_cols=182 Identities=28% Similarity=0.402 Sum_probs=147.8
Q ss_pred EEEeEEEEeC--CCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC--CCceEEEcCEeCCCCCHHHHhcc
Q 016798 189 KFCNISFKYA--DNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 189 ~~~~v~f~y~--~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
..+|+.|.-+ ++...+|+||+=-++||..+||+|+||||||||+++|+|-..- .+|+|++||.+..+ +..+|.
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~ 865 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARV 865 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccc
Confidence 3444444432 2345799999999999999999999999999999999988643 57999999999764 678899
Q ss_pred eEEecCCCc-cccccHHHHHcCCCC---CCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 265 VGLVSQDIT-LFSGTVAENIGYRDL---MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 265 i~~v~Q~~~-lf~~ti~eNi~~~~~---~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+|||.|+.. +-..||||-|.|... .++.++ +-++++++..+++++- |..||.-|..||..||.|+
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrL 938 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRL 938 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhcee
Confidence 999999875 545699999976421 123343 3356677777776654 4568999999999999999
Q ss_pred HHHHHccCCC-CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCcee
Q 016798 337 AIARALYQNS-SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVR 380 (382)
Q Consensus 337 alaRall~~~-~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI 380 (382)
.||=-|+.|| .||+|||||||||+++...|++.++++. .|+|++
T Consensus 939 TIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIl 984 (1391)
T KOG0065|consen 939 TIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTIL 984 (1391)
T ss_pred eEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEE
Confidence 9999999999 8889999999999999999999999986 578876
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-25 Score=218.04 Aligned_cols=169 Identities=27% Similarity=0.367 Sum_probs=138.6
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
++-|.++||+|.|+++. .+++++||-|..++.+|+|||||+|||||+|+++|.+.|..|.|.-.- ..+
T Consensus 387 ~pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~-----------H~~ 454 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS-----------HNK 454 (614)
T ss_pred CCeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc-----------ccc
Confidence 34689999999998764 799999999999999999999999999999999999999999997432 223
Q ss_pred eEEecCCCc---cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 265 VGLVSQDIT---LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 265 i~~v~Q~~~---lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
+++..|+.. -+..|..|++.---++ .-..+++...+..+|+.......| -.+||+|||.||++||.
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~-~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l 523 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPD-EKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARL 523 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccc-cchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHH
Confidence 455555544 3566888887522111 235688888999999875554444 36999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~ 376 (382)
.++.|.+|+|||||++||.++-..+.++|.++..+
T Consensus 524 ~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Gg 558 (614)
T KOG0927|consen 524 AVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGG 558 (614)
T ss_pred HhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCc
Confidence 99999999999999999999999999999887553
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=204.27 Aligned_cols=166 Identities=27% Similarity=0.389 Sum_probs=112.6
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHh-----h-CC----CCCCc-----------eEEEcCEeCCCCC---H
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-----R-LY----DPLSG-----------CILVDDHDVQNIR---L 258 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~-----g-~~----~~~~G-----------~i~~~g~~~~~~~---~ 258 (382)
.-|+|+|++||.|..++|+|+||||||||++.++ + +. .|..+ -|.+|..++..-+ +
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3689999999999999999999999999998653 1 11 12222 3556665553321 1
Q ss_pred HH-------Hhc----------------ceEEecCCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCC
Q 016798 259 DS-------LRR----------------HVGLVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLP 314 (382)
Q Consensus 259 ~~-------~r~----------------~i~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp 314 (382)
.. +|+ .+.|..++...+ +.|+.||+.|..... ..++..++++.+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~--~~~~~~~~L~~v---------- 156 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP--KIARKLQTLCDV---------- 156 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh--hHHHHHHHHHHc----------
Confidence 11 111 133444444432 446777765542211 112223333333
Q ss_pred CCccc-ccCCCCCCCChHHHHHHHHHHHccCC---CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 315 QGYNT-HIGPRGSSLSGGQRQRLAIARALYQN---SSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 315 ~Gldt-~vge~G~~lSgGq~QrialaRall~~---~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++. .++....+|||||+||++|||+|+++ |+++||||||++||+.+...+.+.|+++.+ +.|+|.
T Consensus 157 -gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIi 227 (261)
T cd03271 157 -GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVV 227 (261)
T ss_pred -CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4444 35677889999999999999999996 799999999999999999999999998864 677763
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-24 Score=195.93 Aligned_cols=143 Identities=20% Similarity=0.251 Sum_probs=110.0
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHh----hCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCC-----ccccc-c
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLL----RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI-----TLFSG-T 278 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~----g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-----~lf~~-t 278 (382)
++++.+| +++|+||||||||||+++|. |...|.+|.+..+...+. ....+..+++++|++ .++.. |
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4556677 99999999999999999995 888888887762222222 223466899999998 34433 8
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH------HHHHHHccCCCCEEEEe
Q 016798 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR------LAIARALYQNSSVLILD 352 (382)
Q Consensus 279 i~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr------ialaRall~~~~ililD 352 (382)
+.||+.+.. .+++.+.+ .+....||+||+|| +++|||++.+|++++||
T Consensus 93 ~~~~~~~~~------~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 93 ILENVIFCH------QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred Hhhceeeec------hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 999997642 23332222 33457999999996 79999999999999999
Q ss_pred CcCCCCCHHHHH-HHHHHHHHHhC--CCceec
Q 016798 353 EATSALDSRSEL-LVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 353 Epts~LD~~~~~-~i~~~l~~~~~--~~TvI~ 381 (382)
|||++||+.+.. .+.+.++++.+ ++|+|.
T Consensus 147 EP~~~LD~~~~~~~l~~~l~~~~~~~~~~iii 178 (204)
T cd03240 147 EPTTNLDEENIEESLAEIIEERKSQKNFQLIV 178 (204)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhccCCEEEE
Confidence 999999999999 99999998875 567663
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-25 Score=201.75 Aligned_cols=165 Identities=18% Similarity=0.259 Sum_probs=116.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHh-cce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR-RHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~i 265 (382)
.|+++|.- +|.+ ..+++++++ ++++|+|||||||||++++|. .++|.+. ...| +++
T Consensus 5 ~l~l~nfk-~~~~--~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYAG--EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKKL 61 (212)
T ss_pred EEEEECcc-cCCC--CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhhH
Confidence 57888864 6754 358898887 899999999999999999997 3344332 1233 579
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCHHHH-----HHHHHH----cChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERV-----EHTART----ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~-----~~~~~~----~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
++++|+..+++. |.++++.+...... .+.+ ...-.. .+-...+..+|++.++.+ ..||+|||||
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~----~~lS~G~~~r 135 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIID--KPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI----SNLSGGEKTL 135 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCC--HHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch----hhcCHHHHHH
Confidence 999999887765 77777754432100 0000 000000 011112344577776654 5899999999
Q ss_pred HHHHHHcc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 336 LAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 336 ialaRall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
++||||++ .+|++++|||||++||+.+...+.+.++++.++.|+|
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~i 184 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFI 184 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999996 3589999999999999999999999999987766655
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-24 Score=185.78 Aligned_cols=175 Identities=26% Similarity=0.359 Sum_probs=142.7
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
+.++||+..- -|-.+|.++..||++=+|||||||||||+..++|+. |-+|+|.++|.++..++..++.++=+|
T Consensus 4 ~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 5667776421 256689999999999999999999999999999999 689999999999999999999999999
Q ss_pred ecCCCc-cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC--
Q 016798 268 VSQDIT-LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ-- 344 (382)
Q Consensus 268 v~Q~~~-lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~-- 344 (382)
+.|... .|...|+..+++.-|.. .-.+++..+++.. +++..++..-..|||||.||+-+|-..+.
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~-~~a~~i~~i~~~L-----------~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDK-TRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchH-HHHHHHHHHHhhh-----------cccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998776 78889999998876531 1123444444444 44555666678999999999999998876
Q ss_pred ---CC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 345 ---NS--SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 345 ---~~--~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|| ++|++|||.++||...+..+-+.|.++. .+.++|+
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vim 187 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVM 187 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEE
Confidence 33 6999999999999999988888888775 5788886
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-23 Score=204.03 Aligned_cols=186 Identities=26% Similarity=0.374 Sum_probs=143.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH-HHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i 265 (382)
-++++|++.. ..++|+||++++||+++|.|--|||+|-++++|.|..++.+|+|.+||+++.-.++. ..+..|
T Consensus 263 ~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 263 VLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 4667776531 157999999999999999999999999999999999999999999999998776655 667789
Q ss_pred EEecCCCc---cc-cccHHHHHcCCCCCCCCCHH-HHHHHHHHcChHHHHHhCCCCcccc-cCCCCCCCChHHHHHHHHH
Q 016798 266 GLVSQDIT---LF-SGTVAENIGYRDLMTKIDME-RVEHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 266 ~~v~Q~~~---lf-~~ti~eNi~~~~~~~~~~~~-~~~~~~~~~~l~~~i~~lp~Gldt~-vge~G~~lSgGq~Qriala 339 (382)
+|||.|-- +| ..+|++|+.+... ...... -+....+.....+++..|- ..|+ ....-.+||||-+|++.||
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l-~~~~~~~~i~~~~e~~~~~~~~~~l~--Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASL-RRFSRRGLIDRRKERALAERYIRRLR--IKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhh-hhhccccccChHHHHHHHHHHHHhcC--cccCCccchhhcCCchhhhhHHHH
Confidence 99998865 66 5599999987521 110100 1223333334445666552 2221 1133478999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|.|..+|++|||||||.|+|.-+..+|.+.|+++.+ ++++|+
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~ 456 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILM 456 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999864 677763
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=195.49 Aligned_cols=167 Identities=28% Similarity=0.398 Sum_probs=135.1
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
+-+-+.||+|.|++. .+.+++++|-|.--..+|||||||.|||||+++|.|-++|+.|+..-| .|=+|
T Consensus 585 PvLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~i 652 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRI 652 (807)
T ss_pred CeeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeee
Confidence 457899999999976 478999999999999999999999999999999999999999998644 24479
Q ss_pred EEecCCCc-cc--cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 266 GLVSQDIT-LF--SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 266 ~~v~Q~~~-lf--~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
|+..|+.. -. ..|--|.+.-+- +.+.++...++-..|+.... +|. .-..||||||-|+++|---
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F---Nlpyq~ARK~LG~fGL~sHA-------HTi---kikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF---NLPYQEARKQLGTFGLASHA-------HTI---KIKDLSGGQKARVALAELA 719 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc---CCChHHHHHHhhhhhhhhcc-------ceE---eeeecCCcchHHHHHHHHh
Confidence 99999875 22 337777764221 23456666677666654322 221 2368999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCC
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~ 377 (382)
++.|+||||||||++||.++-..+.++|.++..+-
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIney~GgV 754 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINEYNGGV 754 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcE
Confidence 99999999999999999999999999999886543
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-22 Score=188.32 Aligned_cols=186 Identities=19% Similarity=0.188 Sum_probs=121.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe-C------CCCCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD-V------QNIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~-~------~~~~~~ 259 (382)
.|+++|. .+|.+. . +++..+ .+++|+||||||||||+.+|+++..+..|++..++.+ + ...+..
T Consensus 3 ~i~l~nf-~~~~~~--~-----~~~~~~-~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~ 73 (247)
T cd03275 3 RLELENF-KSYKGR--H-----VIGPFD-RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSN 73 (247)
T ss_pred EEEEECc-cccCCC--e-----eecCCC-CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCc
Confidence 4777774 335321 1 222233 4999999999999999999999998877887654421 1 011112
Q ss_pred HHhcceEEecCCCc--cccccHHHHHc-CCCCCCCCCHHHHHHHHHHcChHHHHHh--CCCCcccccCC---------CC
Q 016798 260 SLRRHVGLVSQDIT--LFSGTVAENIG-YRDLMTKIDMERVEHTARTANADEFVRT--LPQGYNTHIGP---------RG 325 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~--lf~~ti~eNi~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~--lp~Gldt~vge---------~G 325 (382)
...-.+.+..|++. ++..++++... +.-.....+.+++.+.++.++++.+... .|+|.-+.+.+ ..
T Consensus 74 ~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~ 153 (247)
T cd03275 74 SAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDM 153 (247)
T ss_pred eEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhH
Confidence 23334555556543 34445444321 1111123567788888888887422111 23333333322 23
Q ss_pred CCCChHHHHHHHHHHHccC----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 326 SSLSGGQRQRLAIARALYQ----NSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~----~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
.+||||||||++||||++. +|+++||||||++||+.+...+.+.|+++.+ +.|+|+
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~ 214 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIV 214 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEE
Confidence 7899999999999999986 4899999999999999999999999999865 567653
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-22 Score=194.14 Aligned_cols=168 Identities=26% Similarity=0.334 Sum_probs=117.6
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
..+|..++++..|++ +.+|++-++++..|-.+|+|||||+|||||++.|.. |+|..-.++ +++|.-
T Consensus 78 ~~Di~~~~fdLa~G~--k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG--KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred ccceeeeeeeeeecc--hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 457999999999985 468999999999999999999999999999999987 444322111 011110
Q ss_pred eEEecCCCc-cccccHHHHHcCCCC--CCCCCHHHHHH-HHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 265 VGLVSQDIT-LFSGTVAENIGYRDL--MTKIDMERVEH-TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 265 i~~v~Q~~~-lf~~ti~eNi~~~~~--~~~~~~~~~~~-~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+++..-. +-.+|-+.-+..-.+ ....+.+++.. ++.-.|..+.....| -..||||-|=|+||||
T Consensus 144 --~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 144 --DTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALAR 211 (582)
T ss_pred --chHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHH
Confidence 1111000 112222222211110 00113455555 777777776666665 3689999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
|++.+||||+|||||+.||..+-.-+.+.|..+. .|+|
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~l 249 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSL 249 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEE
Confidence 9999999999999999999999999999998774 5665
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=182.80 Aligned_cols=184 Identities=26% Similarity=0.382 Sum_probs=145.0
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC-CCCCHHHHhc-
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV-QNIRLDSLRR- 263 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~-~~~~~~~~r~- 263 (382)
.-++++|++..-+. ....+++|||++++||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|.|+ ...+...+|+
T Consensus 256 ~vL~V~~L~v~~~~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 256 VVLEVEDLSVKDRR-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred eEEEEeeeEeecCC-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 35899999976443 24679999999999999999999999999999999999999999999999997 6678777776
Q ss_pred ceEEecCCCc----cccccHHHHHcCCCCCCC-------CCHHHHHHHHHHcChHHHHHhC---CCCcccccCCCCCCCC
Q 016798 264 HVGLVSQDIT----LFSGTVAENIGYRDLMTK-------IDMERVEHTARTANADEFVRTL---PQGYNTHIGPRGSSLS 329 (382)
Q Consensus 264 ~i~~v~Q~~~----lf~~ti~eNi~~~~~~~~-------~~~~~~~~~~~~~~l~~~i~~l---p~Gldt~vge~G~~lS 329 (382)
.++|||.|.+ ..+.|+.||+.++.-... .+..++.+..+. .++.+ +.+.+++ ..+||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-----li~~fdVr~~~~~~~----a~~LS 405 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE-----LIEEFDVRAPSPDAP----ARSLS 405 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHH-----HHHHcCccCCCCCcc----hhhcC
Confidence 5999999986 456699999976542110 222333322221 22221 2344443 46899
Q ss_pred hHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCce
Q 016798 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTV 379 (382)
Q Consensus 330 gGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~Tv 379 (382)
||..||+-+||-+.++|++||..+||-|||..+.+.|.+.|.+.++ ++.|
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AV 456 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAV 456 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEE
Confidence 9999999999999999999999999999999999999999988764 4444
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.1e-21 Score=212.75 Aligned_cols=180 Identities=22% Similarity=0.303 Sum_probs=118.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHH---------HHhhCCCCCCc----e----EEEc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAK---------LLLRLYDPLSG----C----ILVD 249 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~---------ll~g~~~~~~G----~----i~~~ 249 (382)
.+++++++. ..|+|+||+|++||+++|+|+||||||||++ .|.|...+..+ . |.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 477777652 3699999999999999999999999999999 55564333111 1 3444
Q ss_pred CEeCCCCC----HH------HHh---------cc-----eEEecCC------------------C---------------
Q 016798 250 DHDVQNIR----LD------SLR---------RH-----VGLVSQD------------------I--------------- 272 (382)
Q Consensus 250 g~~~~~~~----~~------~~r---------~~-----i~~v~Q~------------------~--------------- 272 (382)
-.++..-+ .. ++| ++ ..+.++. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 44332210 01 222 00 1122221 1
Q ss_pred -----ccccc-cHHHHHcCCCCCC---CCCHHHHHHHHHHcChHHHHHhCCCCcccc-cCCCCCCCChHHHHHHHHHHHc
Q 016798 273 -----TLFSG-TVAENIGYRDLMT---KIDMERVEHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 273 -----~lf~~-ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~-vge~G~~lSgGq~QrialaRal 342 (382)
..+.+ ||.||+.++.... ..+.+++.+.+ +.+..+ |++.. ++....+|||||+||++|||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHc--CCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 13434 8889887753210 00122222222 123322 66654 6777899999999999999999
Q ss_pred c---CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 343 Y---QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 343 l---~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+ ++|+++||||||++||..+.+.+.+.|+++. +++|+|+
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIi 867 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVI 867 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 8 6999999999999999999999999999986 4678764
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-21 Score=188.55 Aligned_cols=173 Identities=23% Similarity=0.275 Sum_probs=141.0
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
++.+++.+|+|.|+.+..+.+.++++++..-+.+++||++|+||||++|++.+-..|.+|.+.+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 346999999999987765789999999999999999999999999999999999999999998764 667
Q ss_pred eEEecCCCcc-ccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 265 VGLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 265 i~~v~Q~~~l-f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
|+|-.|.-.= ++.++-+--.+....++.+++++++.|...|++..+...+ -..||||||=|+++|-...
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTW 498 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhc
Confidence 9999997753 3333322211112223457899999998887765553322 2579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCc
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHT 378 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~T 378 (382)
.+|.+|||||||+.||.++-..+.++|+.+..+-.
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv 533 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVV 533 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEE
Confidence 99999999999999999999999999988765533
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-20 Score=183.42 Aligned_cols=155 Identities=27% Similarity=0.463 Sum_probs=115.9
Q ss_pred EEEeCCCCCCccceeeEEee-----CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEe
Q 016798 194 SFKYADNMPLVLDQLNLHIR-----AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 194 ~f~y~~~~~~~l~~isl~i~-----~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
-+.|++-. ..+.++.|++. .||+++++||||-||||++++|+|..+|++|. ..++ +++|=
T Consensus 342 lv~y~~~~-k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyK 406 (591)
T COG1245 342 LVEYPDLK-KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYK 406 (591)
T ss_pred eeecchhe-eecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeec
Confidence 34555432 24667777665 56889999999999999999999999999998 1222 47888
Q ss_pred cCCCc-cccccHHHHHcCCCCCCCCCHHHH-HHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 269 SQDIT-LFSGTVAENIGYRDLMTKIDMERV-EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 269 ~Q~~~-lf~~ti~eNi~~~~~~~~~~~~~~-~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
||--. -|++||++-+.-..+.. .....+ .+.++-.++++.++ ..-.+|||||.||+|||-||.+++
T Consensus 407 PQyI~~~~~gtV~~~l~~~~~~~-~~~s~~~~ei~~pl~l~~i~e-----------~~v~~LSGGELQRvaIaa~L~reA 474 (591)
T COG1245 407 PQYISPDYDGTVEDLLRSAIRSA-FGSSYFKTEIVKPLNLEDLLE-----------RPVDELSGGELQRVAIAAALSREA 474 (591)
T ss_pred ceeecCCCCCcHHHHHHHhhhhh-cccchhHHhhcCccchHHHHh-----------cccccCCchhHHHHHHHHHhcccc
Confidence 88544 48999999875433211 122222 23444445544443 345789999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
++++||||++.||.+.+..+.++|++...
T Consensus 475 DlYllDEPSA~LDvEqR~~vakvIRR~~e 503 (591)
T COG1245 475 DLYLLDEPSAYLDVEQRIIVAKVIRRFIE 503 (591)
T ss_pred CEEEecCchhhccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998764
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-21 Score=187.41 Aligned_cols=186 Identities=24% Similarity=0.331 Sum_probs=114.8
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc-
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR- 263 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~- 263 (382)
..++.++|++++|.+. .+++|..|++.+|+.+||+|+|||||||++++|.|-..|..-++-+--.+ +++.+..+..
T Consensus 73 s~dvk~~sls~s~~g~--~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~av 149 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGV--ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQAV 149 (614)
T ss_pred cccceeeeeeeccCCc--eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHHHH
Confidence 4579999999999864 68999999999999999999999999999999999888866554331110 1122111111
Q ss_pred --ceEEecCCCccccccHHHHHcCCCCCC-CCCHHHHHHHHHHcChHH-------HHHhCCCCccc-ccCCCCCCCChHH
Q 016798 264 --HVGLVSQDITLFSGTVAENIGYRDLMT-KIDMERVEHTARTANADE-------FVRTLPQGYNT-HIGPRGSSLSGGQ 332 (382)
Q Consensus 264 --~i~~v~Q~~~lf~~ti~eNi~~~~~~~-~~~~~~~~~~~~~~~l~~-------~i~~lp~Gldt-~vge~G~~lSgGq 332 (382)
-+-.+.++..=.. --.|++.-..+.. ...-+++++-+...+.+. .+..| |... .....-.+|||||
T Consensus 150 ~~v~~~~~~e~~rle-~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl--gf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 150 QAVVMETDHERKRLE-YLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGL--GFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHhhhhHHHHHHHH-HHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc--CCCHhHHHHHhhccCchH
Confidence 0000111000000 0111111110000 000111222222222111 11111 3222 2334468999999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~ 376 (382)
|.|++|||||+.+|++|+|||||++||.++..-+.+.|.+....
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~ 270 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI 270 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999877543
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-21 Score=172.40 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=95.4
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC-CHHHHhcceEEecCCCccccccHHHHH
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI-RLDSLRRHVGLVSQDITLFSGTVAENI 283 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~-~~~~~r~~i~~v~Q~~~lf~~ti~eNi 283 (382)
++++++++.+| +.+|+||||||||||+..|.-.+..... ....|..+.++ ....-...|.+.+|+..++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 35677777776 7799999999999999998754433211 00112211110 00111345788888776555 2
Q ss_pred cCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc----cCCCCEEEEeCcCCCCC
Q 016798 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL----YQNSSVLILDEATSALD 359 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal----l~~~~ililDEpts~LD 359 (382)
+....+.+.+. +++.. ..- ..+...+||+|||||++||||+ +.+|+++||||||++||
T Consensus 84 ----~~~~~~~~~~~---------~~l~~-~~~----~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD 145 (198)
T cd03276 84 ----PLCVLSQDMAR---------SFLTS-NKA----AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMD 145 (198)
T ss_pred ----cCCHHHHHHHH---------HHhcc-ccc----cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccC
Confidence 11111122222 33333 111 2334579999999999999999 69999999999999999
Q ss_pred HHHHHHHHHHHHHHhC
Q 016798 360 SRSELLVRQAVDRLLG 375 (382)
Q Consensus 360 ~~~~~~i~~~l~~~~~ 375 (382)
..+...+.+.|++..+
T Consensus 146 ~~~~~~~~~~l~~~~~ 161 (198)
T cd03276 146 MVNRKISTDLLVKEAK 161 (198)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988743
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-20 Score=200.78 Aligned_cols=66 Identities=32% Similarity=0.483 Sum_probs=58.9
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHccCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 316 Gldt-~vge~G~~lSgGq~QrialaRall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|++. .++.....||||||||++|||+|+++| +++||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi 888 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5554 467788999999999999999999999 9999999999999999999999999986 4678774
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-19 Score=191.23 Aligned_cols=66 Identities=30% Similarity=0.477 Sum_probs=58.3
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHccC---CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQ---NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 316 Gldt-~vge~G~~lSgGq~QrialaRall~---~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|++. .++....+|||||+||++|||+|++ +|+++||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5654 4688889999999999999999997 599999999999999999999999999986 4677764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-18 Score=154.41 Aligned_cols=66 Identities=27% Similarity=0.329 Sum_probs=58.5
Q ss_pred HHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC-Cceec
Q 016798 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGH-HTVRE 381 (382)
Q Consensus 310 i~~lp~Gldt~vge~G~~lSgGq~QrialaRall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~-~TvI~ 381 (382)
+..+|+|-.|++ ||||||||++|||++. .+|+++++||||++||+.+.+.+.+.++++.++ +|+|.
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIi 153 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIV 153 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 566788988887 9999999999999985 799999999999999999999999999988654 67653
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-18 Score=151.63 Aligned_cols=179 Identities=23% Similarity=0.253 Sum_probs=126.8
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC-CCH-----
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-IRL----- 258 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~-~~~----- 258 (382)
...|+++++.|+|+..+ |++-|+|+++++|....+||.||||||||+|+|.|-.-.-.|.|.++|.+--. -..
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 35799999999999765 79999999999999999999999999999999999888888999999986432 111
Q ss_pred -----HHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 259 -----DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 259 -----~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.+|++.++.--.-|.--+-++.+ +.++-. ..+.++-++..+. +|-.+.=+-..+|-|||
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~-mifgV~--g~dp~Rre~LI~i-------------LDIdl~WRmHkvSDGqr 153 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGVG--GDDPERREKLIDI-------------LDIDLRWRMHKVSDGQR 153 (291)
T ss_pred eeEecccccccccccccccccccccHHH-HHhhcc--CCChhHhhhhhhh-------------eeccceEEEeeccccch
Confidence 12333333322111111113322 223321 1122222222222 23223334468999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
+|+.|+..|++.=++|+|||.|--||.-.+..+++-+++-.. +.|++
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIV 202 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIV 202 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEE
Confidence 999999999999999999999999999999999999988664 45654
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-18 Score=153.23 Aligned_cols=177 Identities=22% Similarity=0.349 Sum_probs=135.5
Q ss_pred EEEEeEEEEeC--CCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC----CCceEEEcCEeCCCCCHHHH
Q 016798 188 VKFCNISFKYA--DNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRLDSL 261 (382)
Q Consensus 188 i~~~~v~f~y~--~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~----~~G~i~~~g~~~~~~~~~~~ 261 (382)
+.++|++..+. .+...+++++|+++..||+-++||+||||||-++|.|+|..+. +.-+..+|+.++-.+++...
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 34566665553 3334589999999999999999999999999999999998864 45678899999999998887
Q ss_pred hc----ceEEecCCCcc-c--ccc----HHHHHcCC----CCCC--CCCHHHHHHHHHHcChHH---HHHhCCCCccccc
Q 016798 262 RR----HVGLVSQDITL-F--SGT----VAENIGYR----DLMT--KIDMERVEHTARTANADE---FVRTLPQGYNTHI 321 (382)
Q Consensus 262 r~----~i~~v~Q~~~l-f--~~t----i~eNi~~~----~~~~--~~~~~~~~~~~~~~~l~~---~i~~lp~Gldt~v 321 (382)
|+ .|++++|+|.- . +.+ +-+||-.. +... .....+..+.++++|+.| ...+.|
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP------- 156 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP------- 156 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc-------
Confidence 74 58899999972 2 223 33454211 0000 112345567788888864 334444
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
..|--||-|++.||-|+..+|++||-||||+++|+.|..+|.+.|.+.-+
T Consensus 157 ----~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQ 206 (330)
T COG4170 157 ----YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQ 206 (330)
T ss_pred ----chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhc
Confidence 67888999999999999999999999999999999999999999988765
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.9e-19 Score=187.96 Aligned_cols=169 Identities=27% Similarity=0.371 Sum_probs=138.1
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC---CCceEEEcCEeCCCCCHHHHhcceEEecCCCcccc-c
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-G 277 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~---~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ 277 (382)
..+|+|+|.-++||+.+.+.||.|||||||++.++|-.+. ..|+|.+||.+.++... ++.++|++|+...|+ .
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3689999999999999999999999999999999998764 35799999999998766 778999999888775 4
Q ss_pred cHHHHHcCCCC----CC---CCCHHHHH-----HHHHHcChHHHHHhCCCCcccccCCC-CCCCChHHHHHHHHHHHccC
Q 016798 278 TVAENIGYRDL----MT---KIDMERVE-----HTARTANADEFVRTLPQGYNTHIGPR-GSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 278 ti~eNi~~~~~----~~---~~~~~~~~-----~~~~~~~l~~~i~~lp~Gldt~vge~-G~~lSgGq~QrialaRall~ 344 (382)
||||-+.|... .. +.+..+.. ..++.. .|....||.||.+ ....|||||.|+++|-+++.
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkil-------GL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~ 277 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKIL-------GLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG 277 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHh-------CchhhccceecccccccccCcccceeeeeeeeec
Confidence 99999976421 11 12222211 233333 4445789999987 57899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
+++++.+||+|.|||+.|.-++.++|++..+ +.|.+
T Consensus 278 ~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~ 315 (1391)
T KOG0065|consen 278 PASILFWDEITRGLDSSTAFQIIKALRQLAHITGATAL 315 (1391)
T ss_pred CcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEE
Confidence 9999999999999999999999999998764 45554
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-18 Score=167.50 Aligned_cols=170 Identities=31% Similarity=0.391 Sum_probs=116.3
Q ss_pred eEEEEeCCCCCCccceeeEE-eeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE-----------EcCEeCCCC---
Q 016798 192 NISFKYADNMPLVLDQLNLH-IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-----------VDDHDVQNI--- 256 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~-i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~-----------~~g~~~~~~--- 256 (382)
++..+|+.+. ++=..|- .++|+.+||+||||-||||.+|+|+|.+.|.=|+-- +-|..++++
T Consensus 79 e~vHRYg~Ng---FkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVNG---FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCCc---eEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 4567887653 2333343 347999999999999999999999999999877631 111111110
Q ss_pred -CHHHHh--cceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 257 -RLDSLR--RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 257 -~~~~~r--~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
-...+| .++-||.--|-.+.|++.|-+.-.+. .-..++.++.| +++..+..+-.+|||||-
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de--------------~g~~devve~l--~L~nvl~r~v~~LSGGEL 219 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE--------------RGKFDEVVERL--GLENVLDRDVSELSGGEL 219 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh--------------cCcHHHHHHHh--cchhhhhhhhhhcCchHH
Confidence 000111 12334444455566666665532111 11233444444 455555567789999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCcee
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI 380 (382)
||+|||-|++++++++++|||||-||...+....+.++++.+ +++||
T Consensus 220 Qr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~Vi 267 (591)
T COG1245 220 QRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVI 267 (591)
T ss_pred HHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEE
Confidence 999999999999999999999999999999999999999987 57776
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-18 Score=138.40 Aligned_cols=75 Identities=24% Similarity=0.151 Sum_probs=70.7
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 282 (382)
++|++++|++++|+.++|+||||||||||++++. +|++.++|.|+..++.++.++.+++++|+ +|.+||+||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 89999999999999988888889999998 999999999
Q ss_pred HcC
Q 016798 283 IGY 285 (382)
Q Consensus 283 i~~ 285 (382)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 976
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=159.45 Aligned_cols=154 Identities=30% Similarity=0.433 Sum_probs=118.7
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC--------CCCCCceEEEcCEeCCCCCHHHHhcceEEecC--CC
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--------YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ--DI 272 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~--------~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q--~~ 272 (382)
.+|+|+||+|++|+.++|||+|||||||++++|+|. |+|++|.|.+--..++ +.+|- ||
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-----------hccCccccc
Confidence 579999999999999999999999999999999984 7899999986432222 23333 33
Q ss_pred ccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEe
Q 016798 273 TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352 (382)
Q Consensus 273 ~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililD 352 (382)
.+=..|+.|.+.--. -|...-.+.++.+++.|-+.- . ..-..||-|||-|..||+++...|.+++.|
T Consensus 466 ~f~~~tilehl~s~t----GD~~~AveILnraGlsDAvly-----R----r~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 466 EFGEVTILEHLRSKT----GDLNAAVEILNRAGLSDAVLY-----R----RKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred ccCchhHHHHHhhcc----CchhHHHHHHHhhccchhhhh-----h----ccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 333448999884211 122334567888888764421 1 123689999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHh--CCCcee
Q 016798 353 EATSALDSRSELLVRQAVDRLL--GHHTVR 380 (382)
Q Consensus 353 Epts~LD~~~~~~i~~~l~~~~--~~~TvI 380 (382)
|..|.||..|...+.+.|.++. .+-|.+
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTli 562 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLI 562 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEE
Confidence 9999999999999999999887 355554
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-17 Score=151.27 Aligned_cols=153 Identities=16% Similarity=0.209 Sum_probs=92.2
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hc-----ceEEecCCCcccccc-
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RR-----HVGLVSQDITLFSGT- 278 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~-----~i~~v~Q~~~lf~~t- 278 (382)
+++.++..+| ..+|+|+||||||||+..|.-..-...... ... -...++ +. .|-...+.. ...
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~i~~g~~~~~v~~~~~~~---~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEFVKRGCDEGTIEIELYGN---PGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHHhhCCCCcEEEEEEEEeC---CCcc
Confidence 4455555443 668999999999999999875552211100 000 011111 10 111111110 000
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH----ccCCCCEEEEeCc
Q 016798 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA----LYQNSSVLILDEA 354 (382)
Q Consensus 279 i~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa----ll~~~~ililDEp 354 (382)
..+|+.+ -.+.+.+.+....... +.+..+|.+.+.. ..+...||||||||+.+|++ ++.+|+++|+|||
T Consensus 85 ~~~n~~~-----~~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP 157 (213)
T cd03277 85 QVDNLCQ-----FLPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEI 157 (213)
T ss_pred ccCCceE-----EEchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecc
Confidence 2233321 1234444444444333 5556677665432 44678999999999887654 4689999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhC
Q 016798 355 TSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 355 ts~LD~~~~~~i~~~l~~~~~ 375 (382)
|++||+.+...+.+.+++..+
T Consensus 158 ~~~LD~~~~~~i~~~l~~~~~ 178 (213)
T cd03277 158 NQGMDPTNERKVFDMLVETAC 178 (213)
T ss_pred cccCCHHHHHHHHHHHHHHhh
Confidence 999999999999999988864
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-17 Score=149.00 Aligned_cols=119 Identities=20% Similarity=0.230 Sum_probs=84.1
Q ss_pred cceeeEEeeCCC-EEEEECCCCCcHHHHHHHHh--------hCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccc
Q 016798 205 LDQLNLHIRAGE-TVALIGPSGGGKSTLAKLLL--------RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (382)
Q Consensus 205 l~~isl~i~~G~-~~aivG~sGsGKSTl~~ll~--------g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 275 (382)
+-++||++.+|+ +++|+||||||||||++.|. |++-|....+ .++|+.|....
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~- 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFAD- 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEe-
Confidence 457899999996 69999999999999999998 5554432111 23444443210
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcC
Q 016798 276 SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355 (382)
Q Consensus 276 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpt 355 (382)
++. ++. +.++-..+|+|+||+..+++++ .+|+++++||||
T Consensus 79 ---------lg~------~~~------------------------l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~ 118 (200)
T cd03280 79 ---------IGD------EQS------------------------IEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELG 118 (200)
T ss_pred ---------cCc------hhh------------------------hhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCC
Confidence 000 000 1122358999999999999985 899999999999
Q ss_pred CCCCHHHHHHHHH-HHHHHhC-CCceec
Q 016798 356 SALDSRSELLVRQ-AVDRLLG-HHTVRE 381 (382)
Q Consensus 356 s~LD~~~~~~i~~-~l~~~~~-~~TvI~ 381 (382)
+++|+.+...+.. .++++.+ +.|+|.
T Consensus 119 ~glD~~~~~~i~~~~l~~l~~~~~~vi~ 146 (200)
T cd03280 119 SGTDPVEGAALAIAILEELLERGALVIA 146 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999888864 5666553 566653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.5e-17 Score=153.27 Aligned_cols=55 Identities=25% Similarity=0.300 Sum_probs=49.6
Q ss_pred CCChHHHHHHHHHHHccC----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 327 SLSGGQRQRLAIARALYQ----NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 327 ~lSgGq~QrialaRall~----~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.|||||+||+++||+++. +|++++|||||++||+.+...+.+.++++.+++|+|+
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~ 228 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLC 228 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 599999999999997653 9999999999999999999999999999877777763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-17 Score=149.66 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=84.1
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCcccc-ccHH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVA 280 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~ 280 (382)
+.+++|++++. |++++|+||||||||||+|.|+|... +...|.++... .+++|...+|. .|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 35788887765 79999999999999999999988553 23355554321 25667555664 4999
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCH
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~ 360 (382)
||+.++... ..++.. .+.+.++.+. +.+|+++|+||||+++|+
T Consensus 78 d~l~~~~s~---~~~e~~------~~~~iL~~~~----------------------------~~~p~llllDEp~~glD~ 120 (199)
T cd03283 78 DDLRDGISY---FYAELR------RLKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNS 120 (199)
T ss_pred hccccccCh---HHHHHH------HHHHHHHhcc----------------------------CCCCeEEEEecccCCCCH
Confidence 999876421 122221 1233333321 179999999999999999
Q ss_pred HHHHHHHH-HHHHHhC-CCcee
Q 016798 361 RSELLVRQ-AVDRLLG-HHTVR 380 (382)
Q Consensus 361 ~~~~~i~~-~l~~~~~-~~TvI 380 (382)
.+...+.. .++++.+ +.|+|
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tii 142 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGI 142 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEE
Confidence 98876654 4565543 45554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.66 E-value=5e-16 Score=147.12 Aligned_cols=163 Identities=21% Similarity=0.306 Sum_probs=97.6
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC---------------------------------------Cc-
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---------------------------------------SG- 244 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~---------------------------------------~G- 244 (382)
+++.++++.+| +.+|+|||||||||++.+|.-+.... +|
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 34566777665 68899999999999998875433110 01
Q ss_pred -eEEEcCEeCCCCCHHHH---hcceEEecCCCccccccHHHHHcCCCCCC-CCCH------HHHHHHHHHcChHHHHHhC
Q 016798 245 -CILVDDHDVQNIRLDSL---RRHVGLVSQDITLFSGTVAENIGYRDLMT-KIDM------ERVEHTARTANADEFVRTL 313 (382)
Q Consensus 245 -~i~~~g~~~~~~~~~~~---r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~-~~~~------~~~~~~~~~~~l~~~i~~l 313 (382)
.+.+||..+.. ..++ -..+.+.+++..|+.++-.+...+-+... .... +++.++++. ..++.. -
T Consensus 91 ~~~~ing~~~~~--l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~--~~~~~~-g 165 (270)
T cd03242 91 RKARLNGIKVRR--LSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQ--RNALLK-G 165 (270)
T ss_pred eEEEECCeeccC--HHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HHHHhC-C
Confidence 23345554433 2233 33466666666677443333222211100 0011 112222221 111111 3
Q ss_pred CCCcccccCCCC----CCCChHHHHHHHHHHHcc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 314 PQGYNTHIGPRG----SSLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 314 p~Gldt~vge~G----~~lSgGq~QrialaRall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
|+..+..+.-++ ..+|+||+|++++||+++ .+|++++|||||++||+.....+.+.+++.
T Consensus 166 ~~~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~ 238 (270)
T cd03242 166 PHRDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR 238 (270)
T ss_pred CChhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC
Confidence 554444433333 348999999999999974 799999999999999999999999999765
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-16 Score=137.47 Aligned_cols=115 Identities=25% Similarity=0.312 Sum_probs=80.1
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE-EecCCCccccccHHHHHcCCC
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG-LVSQDITLFSGTVAENIGYRD 287 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~eNi~~~~ 287 (382)
++.+.++.++.|+|||||||||+++.+....-...|.+.... +. +.+ .+++...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE------------
Confidence 444455679999999999999999998766655555544310 00 011 111111111
Q ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC----CCCEEEEeCcCCCCCHHHH
Q 016798 288 LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ----NSSVLILDEATSALDSRSE 363 (382)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~----~~~ililDEpts~LD~~~~ 363 (382)
+. +. .+||+||+||+++||++.. +|+++++|||++++|+...
T Consensus 72 ----------------------i~-------~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~ 117 (162)
T cd03227 72 ----------------------IF-------TR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDG 117 (162)
T ss_pred ----------------------eh-------he-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHH
Confidence 00 00 1299999999999999986 7899999999999999999
Q ss_pred HHHHHHHHHHhC-CCcee
Q 016798 364 LLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 364 ~~i~~~l~~~~~-~~TvI 380 (382)
..+.+.+.++.+ ++|+|
T Consensus 118 ~~l~~~l~~~~~~~~~vi 135 (162)
T cd03227 118 QALAEAILEHLVKGAQVI 135 (162)
T ss_pred HHHHHHHHHHHhcCCEEE
Confidence 999999988754 35655
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-15 Score=140.58 Aligned_cols=125 Identities=20% Similarity=0.184 Sum_probs=87.6
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE-EecCCCccccccHH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG-LVSQDITLFSGTVA 280 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~ 280 (382)
..+.+|+++++++|++++|+||||+||||+++.++- ..+..++| +||.+...++ +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 358899999999999999999999999999999981 12344555 6666643221 11
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc--cCCCCEEEEeCc---C
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEA---T 355 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal--l~~~~ililDEp---t 355 (382)
+.+ +...++.+.+ ...+|.|++|+..+++++ +.+|+++||||| |
T Consensus 74 ~~i-----------------l~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT 122 (222)
T cd03285 74 DCI-----------------LARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGT 122 (222)
T ss_pred cee-----------------Eeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCC
Confidence 111 1122222111 257999999999999999 999999999999 9
Q ss_pred CCCCHHHHHHHH-HHHHHHhCCCceec
Q 016798 356 SALDSRSELLVR-QAVDRLLGHHTVRE 381 (382)
Q Consensus 356 s~LD~~~~~~i~-~~l~~~~~~~TvI~ 381 (382)
+++|........ +.+.+ ..++|+|+
T Consensus 123 ~~lD~~~~~~~il~~l~~-~~~~~vli 148 (222)
T cd03285 123 STYDGFGLAWAIAEYIAT-QIKCFCLF 148 (222)
T ss_pred ChHHHHHHHHHHHHHHHh-cCCCeEEE
Confidence 999998664332 44433 23567653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-15 Score=139.19 Aligned_cols=145 Identities=23% Similarity=0.316 Sum_probs=95.9
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE--EEcCEeCCCCCHHHHhcce--EEecCCCccccccHHHHH
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI--LVDDHDVQNIRLDSLRRHV--GLVSQDITLFSGTVAENI 283 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i--~~~g~~~~~~~~~~~r~~i--~~v~Q~~~lf~~ti~eNi 283 (382)
.=+.+.+||+++|+||+|+|||||++.+++..+...+++ .+-...-...+..++.+.+ .+|-.+.. .+....+
T Consensus 9 ~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~---~~~~~~~ 85 (249)
T cd01128 9 LFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFD---EPPERHV 85 (249)
T ss_pred eecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCC---CCHHHHH
Confidence 335788999999999999999999999999987754333 3222221224555555444 11111100 0111111
Q ss_pred cCCCCCCCCCHHHHHHHHH---HcC-----hHHHHHhCCCCcccccCCCCCCCChHH--------HHHHHHHHHccCCCC
Q 016798 284 GYRDLMTKIDMERVEHTAR---TAN-----ADEFVRTLPQGYNTHIGPRGSSLSGGQ--------RQRLAIARALYQNSS 347 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~---~~~-----l~~~i~~lp~Gldt~vge~G~~lSgGq--------~QrialaRall~~~~ 347 (382)
.. ...+.+.++ ..+ +-|.+.++|+++++..++.|..+|||| +||+++||+++++++
T Consensus 86 ~~--------~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gs 157 (249)
T cd01128 86 QV--------AEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGS 157 (249)
T ss_pred HH--------HHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCc
Confidence 00 001111111 112 235688999999999999999999999 999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHH
Q 016798 348 VLILDEATSALDSRSELL 365 (382)
Q Consensus 348 ililDEpts~LD~~~~~~ 365 (382)
|.+| ||+.+|..++..
T Consensus 158 It~l--~T~~~d~~~~~~ 173 (249)
T cd01128 158 LTII--ATALVDTGSRMD 173 (249)
T ss_pred eEEe--eeheecCCCccc
Confidence 9999 999999766653
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-14 Score=147.11 Aligned_cols=65 Identities=32% Similarity=0.495 Sum_probs=59.0
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHccCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCcee
Q 016798 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVR 380 (382)
Q Consensus 316 Gldt-~vge~G~~lSgGq~QrialaRall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI 380 (382)
||.. .+|.....|||||.|||-||.-|.++. -++||||||.||-.+.-+++++.|.++. ++.|||
T Consensus 810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTVi 879 (935)
T COG0178 810 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVI 879 (935)
T ss_pred CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 5554 689999999999999999999999988 8999999999999999999999999986 477876
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6e-15 Score=142.73 Aligned_cols=177 Identities=27% Similarity=0.417 Sum_probs=109.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh--CCCCCCceEEEcCEeCCCCCHHHH---
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR--LYDPLSGCILVDDHDVQNIRLDSL--- 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g--~~~~~~G~i~~~g~~~~~~~~~~~--- 261 (382)
+|.++|.+.+..+ +..+.|-||.|-.|..+++|||||-|||||++-|+- |--|..=+|+++-+.+..-+...+
T Consensus 264 DIKiEnF~ISA~G--k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISAQG--KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeeccc--ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 6888997776654 458899999999999999999999999999999873 333433345544443321110000
Q ss_pred ----hcceEEecCCCccccccHHHHHcCCCCCCCCCHH---HHHHHHHHcCh-------HHHHHhCCCCcccccCCCC-C
Q 016798 262 ----RRHVGLVSQDITLFSGTVAENIGYRDLMTKIDME---RVEHTARTANA-------DEFVRTLPQGYNTHIGPRG-S 326 (382)
Q Consensus 262 ----r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~---~~~~~~~~~~l-------~~~i~~lp~Gldt~vge~G-~ 326 (382)
.++..++..+.-| ...+--|+. .-.+ ++.+.++..|. ...+..| |++-.+-++. .
T Consensus 342 l~aD~kRl~lLeee~~L-----~~q~e~Gd~---taaErl~~v~~ELraiGA~sAEarARRILAGL--GFskEMQ~rPt~ 411 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKL-----MSQIEEGDT---TAAERLKEVADELRAIGADSAEARARRILAGL--GFSKEMQERPTT 411 (807)
T ss_pred HHhhHHHHHHHHHHHHH-----HHHHHcCch---HHHHHHHHHHHHHHHhccccchhHHHHHHhhc--CCChhHhcCCcc
Confidence 0011111111000 000101110 0011 12222222222 1233333 5666665554 6
Q ss_pred CCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 327 ~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
.+|||-|-|++|||||+-.|-+|.|||||++||....-.+-+.|..+++
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK 460 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK 460 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh
Confidence 8999999999999999999999999999999999988888788877643
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-14 Score=158.88 Aligned_cols=66 Identities=27% Similarity=0.372 Sum_probs=58.3
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHccCC---CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQN---SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 316 Gldt-~vge~G~~lSgGq~QrialaRall~~---~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||.. .+|.....|||||.|||-||.-|.++ +.++||||||.+|++..-+++.+.|+++. .+.|+|.
T Consensus 1687 GLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tviv 1757 (1809)
T PRK00635 1687 GLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIY 1757 (1809)
T ss_pred CCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 4443 58999999999999999999999876 78999999999999999999999999986 4788873
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-14 Score=130.76 Aligned_cols=121 Identities=20% Similarity=0.265 Sum_probs=74.1
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhC-CCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCC
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRL-YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYR 286 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~ 286 (382)
.++++.+|++++|+|||||||||+++.|++. +.+..|..... .+..+++..|....|. ..+++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-----------~~~~i~~~dqi~~~~~--~~d~i--- 85 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-----------ESASIPLVDRIFTRIG--AEDSI--- 85 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-----------cccccCCcCEEEEEec--Ccccc---
Confidence 4555668999999999999999999999943 32333321110 1223444333221111 11111
Q ss_pred CCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHH
Q 016798 287 DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366 (382)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i 366 (382)
.++-..++++++ |+..+.+.+.+|+++|+||||+++|+.....+
T Consensus 86 -----------------------------------~~~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 86 -----------------------------------SDGRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred -----------------------------------cCCceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence 111134555555 57777788899999999999999999877766
Q ss_pred HHH-HHHHhC-CCcee
Q 016798 367 RQA-VDRLLG-HHTVR 380 (382)
Q Consensus 367 ~~~-l~~~~~-~~TvI 380 (382)
... ++.+.+ +.++|
T Consensus 130 ~~~ll~~l~~~~~~vi 145 (202)
T cd03243 130 AYAVLEHLLEKGCRTL 145 (202)
T ss_pred HHHHHHHHHhcCCeEE
Confidence 544 444432 55655
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-14 Score=159.54 Aligned_cols=94 Identities=24% Similarity=0.358 Sum_probs=84.9
Q ss_pred cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH------HHHHHHHccCCCC
Q 016798 274 LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ------RLAIARALYQNSS 347 (382)
Q Consensus 274 lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q------rialaRall~~~~ 347 (382)
.|+||++|||.+ ++ +.+++ ..+++.++.++|+..+|.| ||.++..| .||||||| |++||||++.+|+
T Consensus 1153 ~~~~~~~~~i~~-~~--~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~ 1225 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RS--DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCG 1225 (1311)
T ss_pred HcCccHHHHhhc-CC--CCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCC
Confidence 499999999999 65 33444 6888899999999999999 99999876 89999999 9999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
+|+|||||++||+.+...+.+.|..+.
T Consensus 1226 il~lDEPt~~lD~~~~~~l~~~l~~~~ 1252 (1311)
T TIGR00606 1226 IIALDEPTTNLDRENIESLAHALVEII 1252 (1311)
T ss_pred EEEeeCCcccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999888763
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=133.52 Aligned_cols=153 Identities=25% Similarity=0.420 Sum_probs=109.7
Q ss_pred EEeCCCCCCccceeeEEeeCCC-----EEEEECCCCCcHHHHHHHHhhCCCCCCce-EEEcCEeCCCCCHHHHhcceEEe
Q 016798 195 FKYADNMPLVLDQLNLHIRAGE-----TVALIGPSGGGKSTLAKLLLRLYDPLSGC-ILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 195 f~y~~~~~~~l~~isl~i~~G~-----~~aivG~sGsGKSTl~~ll~g~~~~~~G~-i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
|.||+- ...+-+..|.|+.|+ ++...|+||.||||++++++|..+|++|. |-. + .++|=
T Consensus 343 y~Yp~m-~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~-------l-------nVSyk 407 (592)
T KOG0063|consen 343 YSYPKM-KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV-------L-------NVSYK 407 (592)
T ss_pred eccCcc-eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc-------c-------ceecc
Confidence 556654 346789999999996 57889999999999999999999998763 321 1 36677
Q ss_pred cCCCc-cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 269 SQDIT-LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 269 ~Q~~~-lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
||.-. =|.+|+|.-+.---...-.+..-+.++++-..+++.+ +....+|||||.||+|+|-+|=+.++
T Consensus 408 pqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~-----------dqevq~lSggelQRval~KOGGKpAd 476 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENII-----------DQEVQGLSGGELQRVALALCLGKPAD 476 (592)
T ss_pred ccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHH-----------hHHhhcCCchhhHHHHHHHhcCCCCc
Confidence 77654 4778888765210000111223333444444443333 34568999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
+++.|||.+-||++.+..--+.+++.
T Consensus 477 vYliDEpsAylDSeQRi~AskvikRf 502 (592)
T KOG0063|consen 477 VYLIDEPSAYLDSEQRIIASKVIKRF 502 (592)
T ss_pred eEEecCchhhcChHHHHHHHHHHHHH
Confidence 99999999999999877666666654
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.8e-14 Score=126.98 Aligned_cols=127 Identities=17% Similarity=0.202 Sum_probs=84.6
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE-ecCCCccccccHH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL-VSQDITLFSGTVA 280 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~-v~Q~~~lf~~ti~ 280 (382)
+.+.+|+++++++|+.++|+||||+||||+++.++++. +..++|+ ||-.. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 46899999999999999999999999999999998874 2223332 21111 122555
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCH
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~ 360 (382)
|||...- +.+..+.++...+|+|++|+ ..+-+++.+|++++||||++++|+
T Consensus 73 d~I~~~~----------------------------~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 73 NRLLSRL----------------------------SNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred hheeEec----------------------------CCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 6553211 01111223446899999975 555567889999999999999999
Q ss_pred HHHHHHHH-HHHHHh-CCCcee
Q 016798 361 RSELLVRQ-AVDRLL-GHHTVR 380 (382)
Q Consensus 361 ~~~~~i~~-~l~~~~-~~~TvI 380 (382)
.....+.. .++.+. .++++|
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i 145 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVF 145 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEE
Confidence 76444433 344443 255655
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-12 Score=118.95 Aligned_cols=140 Identities=29% Similarity=0.403 Sum_probs=122.0
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+.++++||.++++++++.|++.++..++.++.++..++..+..++..+.+.|.++|+++||+||.|+.+.+++++..++.
T Consensus 134 ~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~ 213 (275)
T PF00664_consen 134 ILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKY 213 (275)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLL-VSGGSFDGCSLVSFITSLVFMIEPI 142 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l-v~~g~~t~g~l~~~~~~~~~~~~~~ 142 (382)
.+...+............... ....++++++|+++ +..|.+++|.++++..+...+..|+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 214 RKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 777777666655555444433 34467778889999 9999999999999999999998885
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-13 Score=126.63 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcC-----CCCCHHHHHHHHHHHHHHh
Q 016798 331 GQRQRLAIARALYQNSSVLILDEAT-----SALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpt-----s~LD~~~~~~i~~~l~~~~ 374 (382)
-|++++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999999875
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.6e-13 Score=125.68 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=80.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC-HHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCH
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM 294 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~ 294 (382)
+.++|+||+|||||||++.|+|++.|++|+|.++|.++..++ ..++...++++||...--..++.||. + .
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~-----k 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P-----K 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h-----H
Confidence 678999999999999999999999999999999999998664 45777788999996532233454442 0 0
Q ss_pred HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 295 ~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
.+ + -..++|+ .+|+++++|||++ ...+...++.+.
T Consensus 183 ~~--------~-----------------------------~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~ 217 (270)
T TIGR02858 183 AE--------G-----------------------------MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALH 217 (270)
T ss_pred HH--------H-----------------------------HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHh
Confidence 00 0 1345565 4999999999974 233444445555
Q ss_pred CCCceec
Q 016798 375 GHHTVRE 381 (382)
Q Consensus 375 ~~~TvI~ 381 (382)
.+.|+|.
T Consensus 218 ~G~~vI~ 224 (270)
T TIGR02858 218 AGVSIIA 224 (270)
T ss_pred CCCEEEE
Confidence 6777763
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-12 Score=136.66 Aligned_cols=135 Identities=22% Similarity=0.253 Sum_probs=88.6
Q ss_pred cEEEEeEEEEeCCCCCCccce-----eeEEeeCC-CEEEEECCCCCcHHHHHHHHhhC-CCCCCceEEEcCEeCCCCCHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQ-----LNLHIRAG-ETVALIGPSGGGKSTLAKLLLRL-YDPLSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~-----isl~i~~G-~~~aivG~sGsGKSTl~~ll~g~-~~~~~G~i~~~g~~~~~~~~~ 259 (382)
.+.++++.+ |++++ +|+++.++ ++++|+||||+||||++|.++|. +.+..|-
T Consensus 295 ~i~l~~~rh-------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~-------------- 353 (771)
T TIGR01069 295 KIILENARH-------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI-------------- 353 (771)
T ss_pred CEEEccccC-------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC--------------
Confidence 577777654 23333 68888877 99999999999999999999987 3444441
Q ss_pred HHhcceEEecCCCc-cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 260 SLRRHVGLVSQDIT-LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~-lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
+||.... .+ .+.+++.. ..++++ .+ .++-..||+|++|+..+
T Consensus 354 -------~Vpa~~~~~~--~~~d~i~~-----~i~~~~------------si-----------~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 354 -------PIPANEHSEI--PYFEEIFA-----DIGDEQ------------SI-----------EQNLSTFSGHMKNISAI 396 (771)
T ss_pred -------CccCCccccc--cchhheee-----ecChHh------------HH-----------hhhhhHHHHHHHHHHHH
Confidence 3333221 01 11222210 011110 01 11236799999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHh-CCCcee
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVR-QAVDRLL-GHHTVR 380 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~-~~l~~~~-~~~TvI 380 (382)
++++ .+|+++|||||++++|+.....+. ..++.+. .+.++|
T Consensus 397 l~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~vi 439 (771)
T TIGR01069 397 LSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVL 439 (771)
T ss_pred HHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 9987 789999999999999999888884 4455543 355555
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.1e-12 Score=125.23 Aligned_cols=48 Identities=27% Similarity=0.344 Sum_probs=44.0
Q ss_pred CCCChHHHHHHHHHHHcc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 326 SSLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 326 ~~lSgGq~QrialaRall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
..+|.||+|++++|+++. ++|+|++||||+|+||+.....+.+.+.+.
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~ 328 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL 328 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc
Confidence 578999999999999885 799999999999999999999999988653
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-12 Score=117.90 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=75.3
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVA 280 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 280 (382)
..+.+|+++++++ ++++|+|||||||||+++.+++..-. |+ .|..+ +. .+..++++.| +|.. ++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v---p~--~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV---PA--SKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee---cc--ccceecceee---EeccCCch
Confidence 3578999999887 99999999999999999999875421 11 11111 11 1345676654 3432 556
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc--cCCCCEEEEeCc---C
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEA---T 355 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal--l~~~~ililDEp---t 355 (382)
||+..+. |-=...+..+++++ +.+|++++|||| |
T Consensus 84 ~~ls~g~-----------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 84 DDLAGGR-----------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhhccCc-----------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 6654331 11111122233333 579999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHhCCCcee
Q 016798 356 SALDSRSE-LLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 356 s~LD~~~~-~~i~~~l~~~~~~~TvI 380 (382)
+++|.... ..+.+.+.+. .+.|+|
T Consensus 123 ~~lD~~~~~~~il~~l~~~-~~~~vi 147 (216)
T cd03284 123 STYDGLSIAWAIVEYLHEK-IGAKTL 147 (216)
T ss_pred ChHHHHHHHHHHHHHHHhc-cCCcEE
Confidence 99998652 4455555432 255655
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-12 Score=116.20 Aligned_cols=53 Identities=32% Similarity=0.446 Sum_probs=42.5
Q ss_pred CCChHHHHHHHHHHH----ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCce
Q 016798 327 SLSGGQRQRLAIARA----LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTV 379 (382)
Q Consensus 327 ~lSgGq~QrialaRa----ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~Tv 379 (382)
.||||||-+++||=- -+.+.|++||||+.++||......+.+.|++..++.-+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ 192 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQF 192 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999843 35688999999999999999999999999998755433
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.8e-12 Score=113.98 Aligned_cols=117 Identities=21% Similarity=0.278 Sum_probs=78.0
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHh--hCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc--c
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL--RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG--T 278 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~--g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~--t 278 (382)
.+-+|++++=..+.+++|+||||+||||+++.+. ... +..|...... ...++|..|...-+.. |
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 3556666542223799999999999999999998 333 5566655421 2247777775432211 2
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCC
Q 016798 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358 (382)
Q Consensus 279 i~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~L 358 (382)
+.+++ ..| .-+-||+++|++++.+|++++||||++++
T Consensus 85 i~~~~-----------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gt 121 (213)
T cd03281 85 VSSGQ-----------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGT 121 (213)
T ss_pred hhhcc-----------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCC
Confidence 22111 011 23559999999999999999999999999
Q ss_pred CHHHHHHH-HHHHHHHh
Q 016798 359 DSRSELLV-RQAVDRLL 374 (382)
Q Consensus 359 D~~~~~~i-~~~l~~~~ 374 (382)
|+.....+ ...++++.
T Consensus 122 d~~~~~~~~~ail~~l~ 138 (213)
T cd03281 122 DTEDGAGLLIATIEHLL 138 (213)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 98754444 45666664
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-12 Score=136.44 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=58.3
Q ss_pred Ccccc-cCCCCCCCChHHHHHHHHHHHccCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 316 GYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 316 Gldt~-vge~G~~lSgGq~QrialaRall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++.. +.....+|||||+||++|||||..+| +++||||||++||+.....+.+.|+++.+ +.|+|+
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIv 546 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIV 546 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 66543 56777899999999999999999997 89999999999999999999999999864 678774
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.7e-12 Score=124.11 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=56.0
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc-eEEEcCEeCCCCCHHHHhcceEEecCCC
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVDDHDVQNIRLDSLRRHVGLVSQDI 272 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 272 (382)
.+|++||+++++||+++|+||||||||||++ .|+..|++| +|.++|.++...+...+.. .-+|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~-LR~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMET-LDEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHH-HHHHHHhh
Confidence 4799999999999999999999999999999 788888888 7999999998766544322 11777765
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-11 Score=133.41 Aligned_cols=66 Identities=26% Similarity=0.379 Sum_probs=57.6
Q ss_pred Ccccc-cCCCCCCCChHHHHHHHHHHHccCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 316 GYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 316 Gldt~-vge~G~~lSgGq~QrialaRall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++.. ++....+|||||+||++|||||..+| +++||||||++||+.+...+.+.|+++.+ ++|||.
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIv 544 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIV 544 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 55433 56778999999999999999999986 89999999999999999999999999864 678764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-10 Score=113.36 Aligned_cols=48 Identities=27% Similarity=0.332 Sum_probs=43.8
Q ss_pred CCCChHHHHHHHHHHHcc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 326 SSLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 326 ~~lSgGq~QrialaRall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
.-+|+||++++++|+.++ .+|++++||||+|.||......+.+.|...
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~ 318 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL 318 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC
Confidence 457999999999999998 899999999999999999999998888543
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.9e-11 Score=107.31 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=37.9
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHhC--CCcee
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR-QAVDRLLG--HHTVR 380 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~-~~l~~~~~--~~TvI 380 (382)
...+|+|++|...+.+. +.+|+++|+|||++++|+.....+. ..++.+.+ +.++|
T Consensus 59 ~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~ii 116 (185)
T smart00534 59 LSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTL 116 (185)
T ss_pred ccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 45788887774333332 3499999999999999999776664 44555543 45655
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-11 Score=124.58 Aligned_cols=83 Identities=29% Similarity=0.440 Sum_probs=67.8
Q ss_pred HHHHHHHcChHHHHHhCCCCcccccCCCC------CCCChHHHHHHHHHHHcc----------CCCCEEEEeCcC-CCCC
Q 016798 297 VEHTARTANADEFVRTLPQGYNTHIGPRG------SSLSGGQRQRLAIARALY----------QNSSVLILDEAT-SALD 359 (382)
Q Consensus 297 ~~~~~~~~~l~~~i~~lp~Gldt~vge~G------~~lSgGq~QrialaRall----------~~~~ililDEpt-s~LD 359 (382)
+.+.++..+. ++...+|+++++.+++.| ..||||||||++||||++ .+|+++|||||| ++||
T Consensus 433 ~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld 511 (562)
T PHA02562 433 INHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALD 511 (562)
T ss_pred HHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccc
Confidence 3444444432 344467889999998888 789999999999999987 599999999998 7899
Q ss_pred HHHHHHHHHHHHHHhCCCceec
Q 016798 360 SRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 360 ~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
..+...+.+.|+++ ++.|+|+
T Consensus 512 ~~~~~~~~~~l~~~-~~~~iii 532 (562)
T PHA02562 512 AEGTKALLSILDSL-KDTNVFV 532 (562)
T ss_pred hhHHHHHHHHHHhC-CCCeEEE
Confidence 99999999999998 6777763
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.8e-11 Score=113.97 Aligned_cols=147 Identities=29% Similarity=0.382 Sum_probs=98.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEE-----------cCEeCCCC----CHHHHhc--ceEEecCCCccc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV-----------DDHDVQNI----RLDSLRR--HVGLVSQDITLF 275 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~-----------~g~~~~~~----~~~~~r~--~i~~v~Q~~~lf 275 (382)
++|+..++||.||-||||-++.++|-.+|.-|.-.- -|..+.++ ..+.++. ..-||.|-|-..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 379999999999999999999999999998775321 11111110 0111111 123444444444
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcC
Q 016798 276 SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355 (382)
Q Consensus 276 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpt 355 (382)
.+++.+++.--. +.+...++++...+.... ......||||+-||.++|-+...++++.++|||.
T Consensus 178 k~~v~~~l~~~~-----~r~~~~~~~~~~~L~~~~-----------~re~~~lsggelqrfaia~~~vq~advyMFDEpS 241 (592)
T KOG0063|consen 178 KGTVGSLLDRKD-----ERDNKEEVCDQLDLNNLL-----------DREVEQLSGGELQRFAIAMVCVQKADVYMFDEPS 241 (592)
T ss_pred HHHHHHHHHHHh-----hcccHHHHHHHHHHhhHH-----------HhhhhhcccchhhhhhhhhhhhhhcceeEecCCc
Confidence 556666653211 111233344444443333 2345799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhC
Q 016798 356 SALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 356 s~LD~~~~~~i~~~l~~~~~ 375 (382)
|-||.+.+..-...|+.+..
T Consensus 242 sYLDVKQRLkaA~~IRsl~~ 261 (592)
T KOG0063|consen 242 SYLDVKQRLKAAITIRSLIN 261 (592)
T ss_pred ccchHHHhhhHHHHHHHhhC
Confidence 99999988888888888753
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.9e-10 Score=102.69 Aligned_cols=139 Identities=16% Similarity=0.203 Sum_probs=79.4
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHH-HHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTL-AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl-~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
+.+++++..+++ .+++|+++.|+|++||||||+ +++++++.++....+.+... .+.+++
T Consensus 8 ~~~~~ld~~l~g-----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e----~~~~~~----- 67 (230)
T PRK08533 8 LSRDELHKRLGG-----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ----LTTTEF----- 67 (230)
T ss_pred EEEeeeehhhCC-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHH-----
Confidence 556666655543 278999999999999999999 68999887654333333211 111111
Q ss_pred EecCCCccccccHHHHH-cCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc--
Q 016798 267 LVSQDITLFSGTVAENI-GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY-- 343 (382)
Q Consensus 267 ~v~Q~~~lf~~ti~eNi-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall-- 343 (382)
.++. .+|- +.++ +... +.+. .+ +-...+|+++.++-.+.+.+-
T Consensus 68 -------------~~~~~~~g~-----~~~~------------~~~~--~~l~-~~-~~~~~~~~~~~~~~~l~~il~~~ 113 (230)
T PRK08533 68 -------------IKQMMSLGY-----DINK------------KLIS--GKLL-YI-PVYPLLSGNSEKRKFLKKLMNTR 113 (230)
T ss_pred -------------HHHHHHhCC-----chHH------------Hhhc--CcEE-EE-EecccccChHHHHHHHHHHHHHH
Confidence 1111 1110 1111 1100 0000 00 000235666555544444332
Q ss_pred --CCCCEEEEeCcCCCC----CHHHHHHHHHHHHHHhC-CCcee
Q 016798 344 --QNSSVLILDEATSAL----DSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 344 --~~~~ililDEpts~L----D~~~~~~i~~~l~~~~~-~~TvI 380 (382)
.+|+++++||||+.+ |+...+.+.+.++.+.+ ++|++
T Consensus 114 ~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi 157 (230)
T PRK08533 114 RFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVII 157 (230)
T ss_pred HhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEE
Confidence 369999999999999 77777788888887754 56665
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.1e-10 Score=103.47 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=42.7
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh-CCCCCCceEEEc
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR-LYDPLSGCILVD 249 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g-~~~~~~G~i~~~ 249 (382)
+.+.+|+++++++|++++|+||||+||||+++.+++ .+.++.|.....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a 66 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence 468899999999999999999999999999999999 667888886543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=116.90 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=44.7
Q ss_pred CCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHH-HHHHh-CCCcee
Q 016798 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA-VDRLL-GHHTVR 380 (382)
Q Consensus 325 G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~-~~~TvI 380 (382)
-..+|+|++|+..++|++ .+|+++|||||++|+|+.....+... ++.+. .+.++|
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vI 444 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKII 444 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 368999999999999999 89999999999999999988777654 44443 355655
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.5e-09 Score=105.49 Aligned_cols=141 Identities=21% Similarity=0.284 Sum_probs=93.7
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe---CCC-----CCHHHHhcceEEecCCCc
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD---VQN-----IRLDSLRRHVGLVSQDIT 273 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~---~~~-----~~~~~~r~~i~~v~Q~~~ 273 (382)
..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|.+ +.+ ++...+++.|.++.+...
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 3589999 9999999999999999999999999999999999999995544 442 344556778888865221
Q ss_pred cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCCh-HHHHH-HHHHHHccCCCCEEEE
Q 016798 274 LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG-GQRQR-LAIARALYQNSSVLIL 351 (382)
Q Consensus 274 lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSg-Gq~Qr-ialaRall~~~~ilil 351 (382)
...+++..+.-.+.+.|+... +|.|-.+-= .+++- -|.|| +++ .+.+||
T Consensus 225 ------------------~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~--Dsltr~A~A~rEisl---~~ge~P---- 275 (438)
T PRK07721 225 ------------------PALMRIKGAYTATAIAEYFRD--QGLNVMLMM--DSVTRVAMAQREIGL---AVGEPP---- 275 (438)
T ss_pred ------------------CHHHHHHHHHHHHHHHHHHHH--CCCcEEEEE--eChHHHHHHHHHHHH---hcCCCC----
Confidence 112334344444445555553 355543321 12210 11111 111 134454
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHh
Q 016798 352 DEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 352 DEpts~LD~~~~~~i~~~l~~~~ 374 (382)
.|+|+|+.....+.+.++++.
T Consensus 276 --~~~G~dp~~~~~l~~ller~~ 296 (438)
T PRK07721 276 --TTKGYTPSVFAILPKLLERTG 296 (438)
T ss_pred --ccccCCHHHHHHHHHHHHHhc
Confidence 689999999999999998876
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-09 Score=105.96 Aligned_cols=82 Identities=23% Similarity=0.294 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccc-----------eeeEEeeCCCEEEEECC
Q 016798 155 GEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLD-----------QLNLHIRAGETVALIGP 223 (382)
Q Consensus 155 ~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~-----------~isl~i~~G~~~aivG~ 223 (382)
...+.+|++++++.++.... ++....+.+.|+||+|.||+. +.+|+ |+++.|.+|+.++||||
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~~-----~~e~~~~ri~Fe~LTf~YP~e-r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~ 176 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNGD-----DPEKAKNRVLFENLTPLYPNE-RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAP 176 (415)
T ss_pred ccccHhHHHHHhCCCccCCC-----CccccCCCeEEEEeeecCCCc-cceeecCccccceeeeeeEEEeCCCCEEEEECC
Confidence 34567899999886554211 112335689999999999965 46896 99999999999999999
Q ss_pred CCCcHHHHHHHHhhCCCCC
Q 016798 224 SGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 224 sGsGKSTl~~ll~g~~~~~ 242 (382)
+|||||||++.|.+.+...
T Consensus 177 ~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCChhHHHHHHHHhhccc
Confidence 9999999999999988643
|
Members of this family differ in the specificity of RNA binding. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-09 Score=108.11 Aligned_cols=135 Identities=21% Similarity=0.164 Sum_probs=94.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.++-+.++..|..+ ..++++ .|++.+|++++|+|++|+|||||++.|+|..+|+.|.|.+.|..-.
T Consensus 130 ~~~r~~i~~~l~TG-iraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~------------ 195 (432)
T PRK06793 130 AFEREEITDVFETG-IKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR------------ 195 (432)
T ss_pred chheechhhccCCC-CEEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc------------
Confidence 45666677667543 357777 4999999999999999999999999999999998887776654432
Q ss_pred EecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc---
Q 016798 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY--- 343 (382)
Q Consensus 267 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall--- 343 (382)
+++|.+. ..+...++. .|.+-..-.+-|.|+|+|.+.+.+..
T Consensus 196 -----------ev~e~~~--------------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 196 -----------EVKDFIR--------------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred -----------cHHHHHH--------------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 2333321 011111110 11122334788999999999999877
Q ss_pred ----CCCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 016798 344 ----QNSSVLILDEATSALDSRSELLVRQAVDR 372 (382)
Q Consensus 344 ----~~~~ililDEpts~LD~~~~~~i~~~l~~ 372 (382)
.++-++++||+|...|+. ++|...+.+
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e 271 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKE 271 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcC
Confidence 778899999999999997 344444433
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.92 E-value=6e-09 Score=100.61 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=38.6
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEc
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~ 249 (382)
+++.+++|+.++|+|++|||||||+++|+++++|..|.+.++
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 457788999999999999999999999999999999988885
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-09 Score=107.14 Aligned_cols=98 Identities=21% Similarity=0.265 Sum_probs=77.4
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEc---CEeCCCCCHHH-
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD---DHDVQNIRLDS- 260 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~---g~~~~~~~~~~- 260 (382)
++.++.++++..|..+ ..+++.++ +|.+||+++|+|+||||||||++.|+++.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 137 PPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 4568999999999755 46888886 999999999999999999999999999999999999885 56665554332
Q ss_pred ---HhcceEEecCCCc--------cccc-cHHHHHc
Q 016798 261 ---LRRHVGLVSQDIT--------LFSG-TVAENIG 284 (382)
Q Consensus 261 ---~r~~i~~v~Q~~~--------lf~~-ti~eNi~ 284 (382)
+++.|++|+|... -+.+ |+.|.++
T Consensus 215 ~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfr 250 (450)
T PRK06002 215 ADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFR 250 (450)
T ss_pred HHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2357999999765 1222 6777764
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.9e-08 Score=80.92 Aligned_cols=100 Identities=42% Similarity=0.567 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCC-ceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLS-GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~ 292 (382)
++..+.|+||+|+||||+++.++..+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999987654 4444444332221111100
Q ss_pred CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHH
Q 016798 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ 368 (382)
Q Consensus 293 ~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~ 368 (382)
............+++..+..+++|-..+|+++++||+..-.+.........
T Consensus 51 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~ 101 (148)
T smart00382 51 -------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLL 101 (148)
T ss_pred -------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHh
Confidence 112223445777888888899999888899999999999999887765543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-11 Score=126.04 Aligned_cols=198 Identities=15% Similarity=0.126 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHH-----HHHHHHHHHH
Q 016798 11 VLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARF-----RRLAHSDLCE 85 (382)
Q Consensus 11 ~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~-----~~~~~~~~~~ 85 (382)
.++++++++++++++......+..++.............+.+.|.+.++.+||..+.+.....+| ..........
T Consensus 5 ~L~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~ 84 (644)
T PRK10733 5 LILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTK 84 (644)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHc
Confidence 34455555445544443333333344444445555677788889999999999998877655555 3322222222
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 86 LLKKRKMKALIPQTV-QLIYFGALFILCGGSLLVSGGSFDGC---SLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 86 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~lv~~g~~t~g---~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
..+..........+. .+.....++++++|++++..+.++.| .+++|..+...+..| ..+...+.++.....+.+|
T Consensus 85 ~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~ 163 (644)
T PRK10733 85 NVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEE 163 (644)
T ss_pred CCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHH
Confidence 222111111111111 12223456677899999999999988 777777777777777 6667777888777788888
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++.+...+.. ..+.+..++++| +.|+||+|+||||+++.+++....
T Consensus 164 l~~i~~~~~~~~------------------------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 164 VAELVEYLREPS------------------------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred HHHHHHHhhCHH------------------------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcCC
Confidence 877765422100 001112245566 999999999999999999987653
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-09 Score=98.63 Aligned_cols=66 Identities=35% Similarity=0.392 Sum_probs=54.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC------------CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHH
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVA 280 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 280 (382)
++|++++|+||||||||||+++|++.++ |..|+ ++|.++..++.+++++. +.++.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 5899999999999999999999999985 77888 58998888887777764 3566667777777
Q ss_pred HHH
Q 016798 281 ENI 283 (382)
Q Consensus 281 eNi 283 (382)
+|.
T Consensus 78 ~~~ 80 (205)
T PRK00300 78 GNY 80 (205)
T ss_pred Ccc
Confidence 663
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.1e-09 Score=108.57 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=51.3
Q ss_pred CCCChHHHHHHHHHHHccCC----CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 326 SSLSGGQRQRLAIARALYQN----SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~----~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
..+||||+||++|||+++.. |+++||||||++||+.+...+.+.|+++.+++|||.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~ 498 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLC 498 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 47899999999999999875 699999999999999999999999999988888764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.6e-09 Score=106.92 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=50.3
Q ss_pred CCChHHHHHHHHHHHccC----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 327 SLSGGQRQRLAIARALYQ----NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 327 ~lSgGq~QrialaRall~----~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+||||+||++|||+++. +|+++||||||++||..+...+.+.|+++.+++|+|.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~ 488 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMC 488 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 479999999999999996 6899999999999999999999999999987777763
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=6e-09 Score=104.05 Aligned_cols=82 Identities=24% Similarity=0.218 Sum_probs=63.9
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc---eEEEcCEeCCCCCHHHH------hcceEEecCCC
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG---CILVDDHDVQNIRLDSL------RRHVGLVSQDI 272 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G---~i~~~g~~~~~~~~~~~------r~~i~~v~Q~~ 272 (382)
..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.+ .|-.+|.++.++..+.+ |..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 3589999 99999999999999999999999999999998763 34445555554433333 45699999998
Q ss_pred ccccc-cHHHHHc
Q 016798 273 TLFSG-TVAENIG 284 (382)
Q Consensus 273 ~lf~~-ti~eNi~ 284 (382)
..+.. ++.+|..
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 87744 7777764
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.2e-08 Score=83.80 Aligned_cols=120 Identities=19% Similarity=0.175 Sum_probs=68.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~ 296 (382)
+++|.|++|+||||+++.+++...+..|.+.+-+.+... ...+ ++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~------------------~~~~~~~--------- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELT------------------ERLIGES--------- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHH------------------HHHhhhh---------
Confidence 378999999999999999999987766776654332211 1111 1100000
Q ss_pred HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCC----------HHHHHHH
Q 016798 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD----------SRSELLV 366 (382)
Q Consensus 297 ~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD----------~~~~~~i 366 (382)
....++. ...+.......+.++.++++.+++...+|+++|+||+++-++ ....+.+
T Consensus 51 -------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l 116 (165)
T cd01120 51 -------------LKGALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEEL 116 (165)
T ss_pred -------------hcccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHH
Confidence 0000001 011111222334555668889999999999999999995444 4444555
Q ss_pred HHHHHHHhC-CCcee
Q 016798 367 RQAVDRLLG-HHTVR 380 (382)
Q Consensus 367 ~~~l~~~~~-~~TvI 380 (382)
.+......+ +.|+|
T Consensus 117 ~~l~~~~~~~~~~vv 131 (165)
T cd01120 117 RELLERARKGGVTVI 131 (165)
T ss_pred HHHHHHHhcCCceEE
Confidence 555544443 55554
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-08 Score=91.31 Aligned_cols=78 Identities=24% Similarity=0.268 Sum_probs=58.6
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCc--ccc-ccHH
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT--LFS-GTVA 280 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~-~ti~ 280 (382)
..+-+.+.+++|+.++|+||+||||||+++.|+|+++|+.|.|.+.+..-...+ .+..++++.|.+. .+. .|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455667789999999999999999999999999999999999999764432221 2345666666553 233 4777
Q ss_pred HHHc
Q 016798 281 ENIG 284 (382)
Q Consensus 281 eNi~ 284 (382)
+.+.
T Consensus 91 ~~l~ 94 (186)
T cd01130 91 DLLR 94 (186)
T ss_pred HHHH
Confidence 7764
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-08 Score=100.51 Aligned_cols=82 Identities=29% Similarity=0.333 Sum_probs=68.2
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHH
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi 283 (382)
-++.+.-.+++|++++++|+||+|||||++.|+|...|..|+|.+++..-.. ...++++.+++|++.+|+.+...|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 4666777788999999999999999999999999999999999998754322 2345689999999999988888888
Q ss_pred cCCCC
Q 016798 284 GYRDL 288 (382)
Q Consensus 284 ~~~~~ 288 (382)
.+..+
T Consensus 261 ~l~~~ 265 (356)
T PRK01889 261 QLWDA 265 (356)
T ss_pred cccCc
Confidence 76543
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-08 Score=87.60 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=39.1
Q ss_pred CCCCCChHHHHHHHHHHHccCCCCEEEEeC--cCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 324 RGSSLSGGQRQRLAIARALYQNSSVLILDE--ATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRall~~~~ililDE--pts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
....+||+++-+..+++..+++|+++++|| |+..+|....+.+.+.+ ..++++|
T Consensus 75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i 130 (174)
T PRK13695 75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVI 130 (174)
T ss_pred EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEE
Confidence 345699999999999999999999999999 55556655444444444 2345554
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.3e-08 Score=87.99 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=34.5
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
..+-+|++|++++|++++|.||||+||||+++.+....
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 36889999999999999999999999999999887653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.9e-08 Score=86.58 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=28.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCC-CceEEEcCEe
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHD 252 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~~g~~ 252 (382)
.+.|+||+||||||+++.|++.+++. .|.|..-..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~ 39 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP 39 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence 68999999999999999999888754 5676654433
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.5e-08 Score=96.20 Aligned_cols=89 Identities=21% Similarity=0.237 Sum_probs=63.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCC--CCc-eEEEcCEeCCCCCHHHHhcceEEecCCCc-----cccccHHHHHc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP--LSG-CILVDDHDVQNIRLDSLRRHVGLVSQDIT-----LFSGTVAENIG 284 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-----lf~~ti~eNi~ 284 (382)
++|..++|+||+||||||+++.|++++.+ ..+ .|.....++ ++..+.++...+++.|... -|...++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999853 333 565544444 5666666666788888643 47788999887
Q ss_pred CCCCCC-----CCCHHHHHHHHHH
Q 016798 285 YRDLMT-----KIDMERVEHTART 303 (382)
Q Consensus 285 ~~~~~~-----~~~~~~~~~~~~~ 303 (382)
.. |+. --+.+.+..+++.
T Consensus 211 ~~-Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 211 RK-PHAILVGEARDAETISAALEA 233 (358)
T ss_pred cC-CCEEeeeeeCCHHHHHHHHHH
Confidence 53 321 1245555667776
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=84.15 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=46.0
Q ss_pred CcccccCCCCCCCChHHHH------HHHHHHHccCCCCEEEEeCcCCCCC---HHHHHHHHHHHHHHhC-CCcee
Q 016798 316 GYNTHIGPRGSSLSGGQRQ------RLAIARALYQNSSVLILDEATSALD---SRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 316 Gldt~vge~G~~lSgGq~Q------rialaRall~~~~ililDEpts~LD---~~~~~~i~~~l~~~~~-~~TvI 380 (382)
|....+......+|+||+| +...+.+.-.+|+++++||||+.+| ......+.+.++.+.+ +.|+|
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi 134 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTL 134 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEE
Confidence 3333344455788999998 4444444567899999999999999 7677777777776653 56655
|
A related protein is found in archaea. |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-08 Score=91.07 Aligned_cols=50 Identities=26% Similarity=0.376 Sum_probs=42.5
Q ss_pred CCCChHHHHHHHHHHHccCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 326 SSLSGGQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
..+|.|++|.+.++-+++..+ .++++|||-++|++...+.+.+.|++..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~ 287 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK 287 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc
Confidence 456999999999998887776 89999999999999999999999988765
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.4e-08 Score=98.54 Aligned_cols=61 Identities=26% Similarity=0.329 Sum_probs=48.5
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcC
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY 285 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~ 285 (382)
++.++.+++|+++++|||||+||||++..|++.+.+..|.. +|+++.+|+ |..+..|++.+
T Consensus 247 ~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~ 307 (484)
T PRK06995 247 DSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRI 307 (484)
T ss_pred cCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHH
Confidence 34444566799999999999999999999999887666542 578899988 66677888863
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.7e-08 Score=88.84 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=60.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHH-----HcCCCCCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN-----IGYRDLMTK 291 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN-----i~~~~~~~~ 291 (382)
+++|+|+||||||||++.|.+++ ..|.+.+-+.| .+....+..++ ..+..+. .
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D-------------------~~~~~~~~~~~~~~~~~~~~~~~-~ 58 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD-------------------SYYKDLSHEELEERKNNNYDHPD-A 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec-------------------ccccccccccHHHhccCCCCCCC-c
Confidence 48999999999999999999998 33444333322 22111111111 1111121 1
Q ss_pred CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCH
Q 016798 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (382)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~ 360 (382)
.+.+.+.+.++... .| ..+.-...+.|.|++++-.+ .+.+++++|+|+|+...++
T Consensus 59 ~~~~~~~~~l~~l~---------~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 59 FDFDLLISHLQDLK---------NG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ccHHHHHHHHHHHH---------CC--CCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 22333322222211 11 11222345777787765544 5788999999999999875
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.4e-08 Score=106.68 Aligned_cols=58 Identities=31% Similarity=0.313 Sum_probs=52.4
Q ss_pred CCCCCChHHHHHHHHHHHccC--------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 324 RGSSLSGGQRQRLAIARALYQ--------NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRall~--------~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
....|||||+|+++|||||.. +|+++||||||++||+.+...+++.|+.+. .++||++
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~i 1012 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGV 1012 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 457899999999999999995 899999999999999999999999999986 4677764
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.4e-07 Score=82.98 Aligned_cols=54 Identities=17% Similarity=0.080 Sum_probs=38.0
Q ss_pred CCChHHHHHHHHHHHccC--CCCEEEEeCcCCCCC---HHHHHHHHHHHHHHh-CCCcee
Q 016798 327 SLSGGQRQRLAIARALYQ--NSSVLILDEATSALD---SRSELLVRQAVDRLL-GHHTVR 380 (382)
Q Consensus 327 ~lSgGq~QrialaRall~--~~~ililDEpts~LD---~~~~~~i~~~l~~~~-~~~TvI 380 (382)
..|.++++.+..++..+. +|+++++||||+.+| .+....+.+.++.+. ++.|++
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvl 159 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTIL 159 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 456788999999999988 899999999996544 444445544455433 355654
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.3e-08 Score=85.47 Aligned_cols=57 Identities=26% Similarity=0.394 Sum_probs=47.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCc
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT 273 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 273 (382)
.|++++|+||||||||||+++|++.+.| .+.+++..+........+..+++++|+..
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEFF 57 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHHH
Confidence 3889999999999999999999999876 58888888776555566678889988843
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.2e-08 Score=96.20 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=59.7
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCC---ceEEEcCEeCCCCCHHHHh----cceEEecCCC
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS---GCILVDDHDVQNIRLDSLR----RHVGLVSQDI 272 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~ 272 (382)
..+++++ +++.+||+++|+|+||+|||||++.|++..+++. |.|-.+|.++.++..+.++ +++++|....
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 3589999 9999999999999999999999999999999987 8899999998877655544 5677776544
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-07 Score=105.75 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=50.9
Q ss_pred CCCCCChHHHHHHHHHHHccC----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCcee
Q 016798 324 RGSSLSGGQRQRLAIARALYQ----------NSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRall~----------~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI 380 (382)
....|||||++|++||+||.. +|++|||||||++||+++...+.+.|+++.. ++||+
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~ 1014 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIG 1014 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 347899999999999999985 7999999999999999999999999998754 66764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-07 Score=107.17 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=51.4
Q ss_pred CCCCCChHHHHHHHHHHHc----cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 324 RGSSLSGGQRQRLAIARAL----YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRal----l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
....||||||||++|||++ +++|+++||||||++||+.+...+.+.|+.+.++.++|+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~ 1147 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIV 1147 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEE
Confidence 4568999999999999998 578899999999999999999999999998876666653
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-07 Score=83.39 Aligned_cols=65 Identities=23% Similarity=0.377 Sum_probs=46.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc-ceEEecCCCccc-cccHHHHHc
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR-HVGLVSQDITLF-SGTVAENIG 284 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~-~i~~v~Q~~~lf-~~ti~eNi~ 284 (382)
+||+++|+|+|||||||+++.|++++.+ +.++|.++.. ...+|+ ..++.+|+...+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999999987 6889988743 223332 356666664432 335555554
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-07 Score=86.71 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=27.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
++|++++|+|+||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-07 Score=82.83 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=65.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~ 296 (382)
+++|+||+|||||||++.+.+.+.+..| +.+-..+........+....++++|++.+.- ..| +.+.. ..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~---g~~~~---~~~ 72 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILGV---ETG---GCPHT---AIR 72 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceehh---hcC---CCccc---eec
Confidence 6899999999999999999999887655 5554456655555555566788898876420 001 11100 001
Q ss_pred HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 297 ~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
...+.....+.++..++|++....|+..|..+|.-.
T Consensus 73 ~~~~~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 73 EDASMNLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred cCHHHHHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 111122334556666777666667777776666544
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-07 Score=101.98 Aligned_cols=50 Identities=32% Similarity=0.458 Sum_probs=44.9
Q ss_pred CCCCCChHHHHHHHH------HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 324 RGSSLSGGQRQRLAI------ARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 324 ~G~~lSgGq~Qrial------aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
....|||||+||+|| ||+++.+|++++|||||++||+.+...+.+.++..
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~ 853 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYS 853 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 467899999999975 59999999999999999999999999998888753
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.6e-07 Score=80.91 Aligned_cols=62 Identities=21% Similarity=0.241 Sum_probs=48.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEE-----------cCEeCCCCCHHHHh-----cceEEecCCCccccc
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV-----------DDHDVQNIRLDSLR-----RHVGLVSQDITLFSG 277 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~-----------~g~~~~~~~~~~~r-----~~i~~v~Q~~~lf~~ 277 (382)
|++++|+|||||||||+++.|++.+.+. |.+.+ +|.+...++.+++. +.++.+.|.+.++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999988654 55544 66666666655542 358899999877766
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.7e-07 Score=101.28 Aligned_cols=56 Identities=38% Similarity=0.417 Sum_probs=47.7
Q ss_pred CCCCChHHHH------HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCcee
Q 016798 325 GSSLSGGQRQ------RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 325 G~~lSgGq~Q------rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI 380 (382)
...|||||+| |+||||+++.+|+++||||||++||+.+...+.+.|..+.+ +.|+|
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~ii 848 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVI 848 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEE
Confidence 3579999999 56667789999999999999999999999999999988654 34555
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-06 Score=94.46 Aligned_cols=39 Identities=28% Similarity=0.203 Sum_probs=32.4
Q ss_pred ccCCCCEEEEeCcCCCC-CHHHHHHHHHHHHHHhC-CCcee
Q 016798 342 LYQNSSVLILDEATSAL-DSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 342 ll~~~~ililDEpts~L-D~~~~~~i~~~l~~~~~-~~TvI 380 (382)
+..+|+++++|||+++| |+.....+.+.++..++ +.++|
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vi 689 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVV 689 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 36899999999999999 68999999999988765 44443
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.5e-07 Score=92.78 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=70.9
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEE---cCEeCCCCCHHHHh---cceEEe-----cC
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILV---DDHDVQNIRLDSLR---RHVGLV-----SQ 270 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~---~g~~~~~~~~~~~r---~~i~~v-----~Q 270 (382)
.+++++ |++.+|++++|+|+||+|||||++.|+|+.++ +.|.|.+ .|.++.++..+.++ .+.+++ +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 368887 99999999999999999999999999999854 4466666 45666665555444 235555 99
Q ss_pred CCc------cccccHHHHHcCCCCCC---CCCHHHHHHHHHHcCh
Q 016798 271 DIT------LFSGTVAENIGYRDLMT---KIDMERVEHTARTANA 306 (382)
Q Consensus 271 ~~~------lf~~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l 306 (382)
+|. ....++.|.++...... .-+..++.++++.+++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 885 22337888876432110 1124566677777776
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=92.59 Aligned_cols=111 Identities=21% Similarity=0.222 Sum_probs=68.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCC--------ceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLS--------GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG 284 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~--------G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~ 284 (382)
+..+.+.|+||+|+||||+++++.++..+.. +-|.+||.++. ++...+. |-.
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~-------------------~~l 232 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT-------------------NPL 232 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh-------------------HHh
Confidence 3456799999999999999999999986544 34778876653 2222211 111
Q ss_pred CCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHH
Q 016798 285 YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364 (382)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~ 364 (382)
++.. ++...+...+.++..++.+.... .-..+||| +|+||| +..||.....
T Consensus 233 lg~~-~~~~~~~a~~~l~~~gl~~~~~g-----------~v~~asgG----------------vL~LDE-i~~Ld~~~Q~ 283 (615)
T TIGR02903 233 LGSV-HDPIYQGARRDLAETGVPEPKTG-----------LVTDAHGG----------------VLFIDE-IGELDPLLQN 283 (615)
T ss_pred cCCc-cHHHHHHHHHHHHHcCCCchhcC-----------chhhcCCC----------------eEEEec-cccCCHHHHH
Confidence 2211 00001122223333443322211 22466777 999999 7999999999
Q ss_pred HHHHHHHH
Q 016798 365 LVRQAVDR 372 (382)
Q Consensus 365 ~i~~~l~~ 372 (382)
.+.+.+++
T Consensus 284 ~Ll~~Le~ 291 (615)
T TIGR02903 284 KLLKVLED 291 (615)
T ss_pred HHHHHHhh
Confidence 99988875
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-07 Score=91.19 Aligned_cols=61 Identities=26% Similarity=0.451 Sum_probs=51.1
Q ss_pred CccceeeEEe---eCCCE-----EEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEeCCCCCHHHHhc
Q 016798 203 LVLDQLNLHI---RAGET-----VALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRR 263 (382)
Q Consensus 203 ~~l~~isl~i---~~G~~-----~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r~ 263 (382)
.+++++++.+ ++|+. +||+|+||||||||++.|.+++.+. .|.|.+||..+...+...+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 5788999887 67887 9999999999999999999999875 588999998876655555554
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.1e-07 Score=102.52 Aligned_cols=65 Identities=22% Similarity=0.314 Sum_probs=53.9
Q ss_pred CcccccCCCC------CCCChHHHHHHHHHHHcc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 316 GYNTHIGPRG------SSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 316 Gldt~vge~G------~~lSgGq~QrialaRall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
|++..+...| ..||||||++++||++|+ .+||++||||||++||+.....+.+.|+++.++.++|
T Consensus 1057 ~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i 1131 (1164)
T TIGR02169 1057 GLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFI 1131 (1164)
T ss_pred CeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEE
Confidence 4555554333 479999999999999997 5789999999999999999999999999887665444
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.4e-06 Score=82.77 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=31.7
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEEc
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVD 249 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~~ 249 (382)
.+++..+.|.||+||||||+++.+++.+++ .+|.|..-
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti 157 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI 157 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE
Confidence 457899999999999999999999997764 46777654
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.3e-07 Score=88.92 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=50.4
Q ss_pred CCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCC-------EEEEECCCCCcHHHHHHHHhhCC
Q 016798 183 HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGE-------TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 183 ~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~-------~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
...+.+++++++|+|+ ..++.++.+++++++|+ .++|+|++|+|||||++.+.|-.
T Consensus 14 ~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 14 EFKGDTEALAAAVRED-ASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hhCCccccccccccCC-CCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4567899999999999 45679999999999999 99999999999999999998753
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.2e-07 Score=79.86 Aligned_cols=26 Identities=50% Similarity=0.630 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999874
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.2e-06 Score=72.65 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=39.6
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
...|.||-=---+.|.+- +.-|+|||||-|+|.+.-+..++..|+++.+
T Consensus 128 h~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~ 176 (233)
T COG3910 128 HHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLAD 176 (233)
T ss_pred hhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHh
Confidence 355888876666666654 4569999999999999999999999998864
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.3e-05 Score=85.60 Aligned_cols=43 Identities=33% Similarity=0.296 Sum_probs=36.4
Q ss_pred HHHHccCCCCEEEEeCcCCCC-CHHHHHHHHHHHHHHhC-CCcee
Q 016798 338 IARALYQNSSVLILDEATSAL-DSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 338 laRall~~~~ililDEpts~L-D~~~~~~i~~~l~~~~~-~~TvI 380 (382)
++|++..+|+++++|||++.| |+.....+.+.++..++ +.+++
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vi 724 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVL 724 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 678899999999999999999 78899999999988764 44443
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.7e-07 Score=86.20 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=54.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC------CHHHHhcceEEecCCCccccc-cHHHHHc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI------RLDSLRRHVGLVSQDITLFSG-TVAENIG 284 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~------~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~ 284 (382)
++|++++++||||+||||++..|++.+.+..|+|.+.+.|.... .....+..+.+++|.+...+. ++.+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999889999988776432 222235568899886544433 4556543
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.27 E-value=3e-06 Score=72.74 Aligned_cols=50 Identities=8% Similarity=0.103 Sum_probs=36.9
Q ss_pred ccCCCCCCCChHHHHHHHHHHH-----ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 320 HIGPRGSSLSGGQRQRLAIARA-----LYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRa-----ll~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
.+......++++++++...... ....++++ |+|++|...-.++.+.|.++
T Consensus 115 ~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 115 VVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3455566678898887765554 24556766 99999999999998888764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.9e-07 Score=87.48 Aligned_cols=48 Identities=31% Similarity=0.438 Sum_probs=44.7
Q ss_pred CCCChHHHHHHHHHHHccC---------CCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 326 SSLSGGQRQRLAIARALYQ---------NSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~---------~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
..+|.||+++++||.+++. +|||++||||+|+||+.....+.+.|.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~ 330 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL 330 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc
Confidence 4689999999999999999 99999999999999999999999999754
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.3e-07 Score=90.26 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=57.0
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~ 255 (382)
++|++..|+. ..+++++++.+..|+.++++||+|||||||++.|.|+++|.+|++.+++..+.+
T Consensus 187 ~~d~~~v~Gq--~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s 250 (506)
T PRK09862 187 QHDLSDVIGQ--EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS 250 (506)
T ss_pred ccCeEEEECc--HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence 4588888864 358999999999999999999999999999999999999999999998877644
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.24 E-value=9e-07 Score=64.18 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=30.9
Q ss_pred cceeeEEeeC-CCEEEEECCCCCcHHHHHHHHhhCCCCCC
Q 016798 205 LDQLNLHIRA-GETVALIGPSGGGKSTLAKLLLRLYDPLS 243 (382)
Q Consensus 205 l~~isl~i~~-G~~~aivG~sGsGKSTl~~ll~g~~~~~~ 243 (382)
+++-.+++.+ |+.+.|.|||||||||++.++.=++-|..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 3456677775 67999999999999999999986665543
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-06 Score=88.06 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=57.4
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~ 255 (382)
+.++.++++..+..+ ..+++++ +++.+||+++|+|+||+|||||++.|+|+..|+.|.+.+.|..-.+
T Consensus 128 ~~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrE 195 (433)
T PRK07594 128 PAMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE 195 (433)
T ss_pred CceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchH
Confidence 356777787777544 4689999 9999999999999999999999999999999999988877765433
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.5e-06 Score=79.28 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=29.4
Q ss_pred ccCCCCEEEEeCcCCC------CCHHHHHHHHHHHHHHhC--CCcee
Q 016798 342 LYQNSSVLILDEATSA------LDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 342 ll~~~~ililDEpts~------LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
...+|+++|+| |+++ .|+.....+.+.|+++.+ +.|++
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl 153 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAIL 153 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEE
Confidence 35799999999 7654 688888888888887753 56665
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-06 Score=79.21 Aligned_cols=56 Identities=30% Similarity=0.421 Sum_probs=44.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCC-CceEEEcCEeCCCCCHHHHhcceEEecCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLRRHVGLVSQDI 272 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 272 (382)
++|++++|+|+|||||||+++.|.+.+.+. .|.+.+||.++.. .+...++|.+|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 578999999999999999999999977554 4689999977652 2233578888876
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.9e-07 Score=79.41 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=40.0
Q ss_pred ccCCCCCCCChHHHHHHH--HHHHccC-CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC
Q 016798 320 HIGPRGSSLSGGQRQRLA--IARALYQ-NSSVLILDEATSALDSRSELLVRQAVDRLLGH 376 (382)
Q Consensus 320 ~vge~G~~lSgGq~Qria--laRall~-~~~ililDEpts~LD~~~~~~i~~~l~~~~~~ 376 (382)
.+......+|+||+|++. +++.+-. +++++ |||++|.+.-..+.+.|.++.+.
T Consensus 140 iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 140 IVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 345566678999999977 6666544 34443 99999999999999999887654
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-06 Score=80.03 Aligned_cols=34 Identities=35% Similarity=0.469 Sum_probs=31.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i 246 (382)
++..++||.||||||||||++.|.+++++.+|.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 3567999999999999999999999999999983
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.2e-06 Score=67.47 Aligned_cols=57 Identities=28% Similarity=0.345 Sum_probs=39.8
Q ss_pred CcccccCCCCCCCChHHHHH-H------HHHHHccC------CCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 016798 316 GYNTHIGPRGSSLSGGQRQR-L------AIARALYQ------NSSVLILDEATSALDSRSELLVRQAVDR 372 (382)
Q Consensus 316 Gldt~vge~G~~lSgGq~Qr-i------alaRall~------~~~ililDEpts~LD~~~~~~i~~~l~~ 372 (382)
|-+..+-..-..+||||||. + |++..+-. .|++++|||||++||.++...+++.+++
T Consensus 21 g~~~~~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 21 GNEVETSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EECTCEEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CceeeeeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 33333334457899999954 2 33333333 3689999999999999999999988864
|
|
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-06 Score=86.34 Aligned_cols=53 Identities=28% Similarity=0.303 Sum_probs=48.3
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~ 255 (382)
..+++++ +++.+|++++|+|++|+|||||+++|++..+++.|.|...|.+-++
T Consensus 125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~e 177 (413)
T TIGR03497 125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGRE 177 (413)
T ss_pred ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHH
Confidence 3589999 9999999999999999999999999999999999999888876544
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-06 Score=83.78 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=45.8
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~ 253 (382)
..+++++ +.+.+|++++|+|+||+|||||+++|+|+..|+.|.+..-|.+-
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~ 107 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERG 107 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCC
Confidence 4589999 99999999999999999999999999999999988887766443
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-06 Score=74.72 Aligned_cols=74 Identities=35% Similarity=0.435 Sum_probs=49.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC-------------CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDP-------------LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~-------------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi 283 (382)
.++|+||||||||||++.|++.+++ ..|+ .+|++..-++..++.+ .+.++.++..++...|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~---~~~~~~f~e~~~~~~~- 74 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFER---LIENGEFLEWAEFHGN- 74 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHH---HHHcCCeEEEEEEcCE-
Confidence 3789999999999999999999754 3333 3666666666666554 3456666667777777
Q ss_pred cCCCCCCCCCHHHHHHHH
Q 016798 284 GYRDLMTKIDMERVEHTA 301 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~ 301 (382)
.+|. ..+.+.++.
T Consensus 75 ~yg~-----~~~~i~~~~ 87 (137)
T cd00071 75 YYGT-----SKAAVEEAL 87 (137)
T ss_pred EecC-----cHHHHHHHH
Confidence 3443 345555444
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=4e-06 Score=76.23 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=35.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 277 (382)
+++.+++|+|+||||||||++.|.+.++ ...+.+++||.+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~ 47 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQ 47 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCc
Confidence 4688999999999999999999999872 1246778888776643
|
|
| >PLN02318 phosphoribulokinase/uridine kinase | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.9e-06 Score=88.42 Aligned_cols=61 Identities=28% Similarity=0.365 Sum_probs=50.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHHc
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIG 284 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~ 284 (382)
-++||.||||||||||++.|++++ |..|.|.+||.... .+.+.+.+|+|.+|+. ++.+|+.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~~-------~~~i~~nfD~P~a~D~d~L~enL~ 127 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYNDS-------SRIIDGNFDDPRLTDYDTLLDNIH 127 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceecc-------hhhhCccCCChhhcchhHHHHHHH
Confidence 589999999999999999999998 67899999987421 2246788999998865 7888874
|
|
| >cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.6e-06 Score=80.89 Aligned_cols=55 Identities=25% Similarity=0.406 Sum_probs=40.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCc
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT 273 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 273 (382)
+++|+|+||||||||++.|++++++..|.+...+ ++...+... |...++.+++|.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D-d~~~~~~~~-r~~~g~~~~~p~ 55 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD-DYHSLDRKG-RKETGITALDPR 55 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc-ccccCCHHH-HHHhhccccccc
Confidence 4799999999999999999999998877655433 555444443 455677777653
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.3e-06 Score=95.21 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=47.9
Q ss_pred CCCCCChHHHHHHH----HHHH--------ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 324 RGSSLSGGQRQRLA----IARA--------LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 324 ~G~~lSgGq~Qria----laRa--------ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
....||||||||++ +|++ +..+|++++|||||+++|+.+...+++.+.++ +.++|+
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~ 1311 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVM 1311 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEE
Confidence 35789999999996 5755 56899999999999999999999999999888 455553
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.5e-06 Score=93.95 Aligned_cols=141 Identities=16% Similarity=0.287 Sum_probs=82.6
Q ss_pred cEEEEeEEEEeCC--CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHH----hhCCCCC-CceEEEcCEeCCCCCHH
Q 016798 187 DVKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL----LRLYDPL-SGCILVDDHDVQNIRLD 259 (382)
Q Consensus 187 ~i~~~~v~f~y~~--~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll----~g~~~~~-~G~i~~~g~~~~~~~~~ 259 (382)
.+.++++- +|++ .+. .-|.|. ..+++|+|||||||||++.+| .|..+|. .|.+++.+.++... .
T Consensus 5 kl~i~g~r-Sf~~~~~~~---~~I~F~---~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~--~ 75 (1311)
T TIGR00606 5 KMSILGVR-SFGIEDKDK---QIIDFF---SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQE--T 75 (1311)
T ss_pred eeeeecee-cCCCccccc---eeeecc---cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCcc--H
Confidence 57788872 4442 111 224443 459999999999999999999 4999995 79988887665432 3
Q ss_pred HHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
..+..|.+++++..-..-++.-.+...... +...+. . +.......++|-...+......++.+..+.+++.
T Consensus 76 ~~~a~V~l~F~~~~g~~~~v~R~~~~~~~~---~~~~~~-~-----~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~ 146 (1311)
T TIGR00606 76 DVRAQIRLQFRDVNGEECAVVRSMVCTQKT---KKTEFK-T-----LEGVITRYKHGEKVSLSSKCAEIDREMISHLGVS 146 (1311)
T ss_pred hhhheeEEEEEcCCCCEEEEEeeeeeeecc---Ccccch-h-----hhhhheecCCCceeeccccHHHHHHHHHHHhCCC
Confidence 556778888865433322222222111100 000110 0 1111222345544445555567888899999888
Q ss_pred HHccCC
Q 016798 340 RALYQN 345 (382)
Q Consensus 340 Rall~~ 345 (382)
.+.+.+
T Consensus 147 ~~~f~~ 152 (1311)
T TIGR00606 147 KAVLNN 152 (1311)
T ss_pred HHHHhh
Confidence 876664
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.5e-05 Score=81.80 Aligned_cols=46 Identities=30% Similarity=0.479 Sum_probs=39.7
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe
Q 016798 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD 252 (382)
Q Consensus 207 ~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~ 252 (382)
.+|+.+.++..++|+|+||||||||++.|++.+....++|.+-+.+
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~~ 483 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKD 483 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCCC
Confidence 3578888899999999999999999999999888888888776543
|
|
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.4e-06 Score=83.90 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=47.4
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~ 254 (382)
..+++++ +++.+|++++|+|+||+|||||++.++|..+++.|.|...|..-.
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~ 202 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGR 202 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChH
Confidence 3589999 999999999999999999999999999999999999998885443
|
|
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.6e-06 Score=84.16 Aligned_cols=53 Identities=28% Similarity=0.312 Sum_probs=47.2
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI 256 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~ 256 (382)
.+++ .+|++.+|++++|+|+||+|||||+++|++..+|+.|.|.+.|..-+++
T Consensus 129 ~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ev 181 (418)
T TIGR03498 129 RVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGREV 181 (418)
T ss_pred EEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeechHH
Confidence 3554 6999999999999999999999999999999999999999888865543
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 382 | ||||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-58 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-54 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-53 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-53 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 5e-52 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-51 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-48 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-47 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-47 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 6e-46 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-43 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 9e-42 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-41 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-41 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-41 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-41 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-41 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-41 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 4e-41 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 5e-37 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 7e-36 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-32 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-31 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-31 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-30 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 8e-23 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-18 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-18 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-18 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-18 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-18 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 9e-18 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-17 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-17 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-17 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-17 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 9e-17 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-16 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-16 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-16 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-15 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-14 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-14 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-13 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-13 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-13 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-13 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 3e-13 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-13 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-12 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-12 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-12 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 5e-12 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 5e-12 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-12 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 8e-12 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 9e-12 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-11 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-11 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-11 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-11 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-10 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-10 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-09 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-09 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-09 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-09 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 4e-09 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-09 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 6e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-08 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-08 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-08 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-07 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 3e-06 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 3e-06 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 5e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 5e-06 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 5e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 6e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 7e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 9e-06 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-05 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 4e-04 |
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 399 bits (1027), Expect = e-136
Identities = 130/370 (35%), Positives = 204/370 (55%), Gaps = 4/370 (1%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M S LS+I ++ P +++ I + +R R ISK ++ ++ ++L V
Sbjct: 160 MFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLI 219
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGAL-FILCGGSLLVSGGSF 123
+ E+ RF ++++ + +K ++ +QLI AL F+L S S
Sbjct: 220 FGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSL 279
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
++ +S++ ++ P++ + +F++G A + LF + + + E +D
Sbjct: 280 TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRV--IDR 337
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
GD++F N++F Y L +NL I AG+TVAL+G SG GKST+A L+ R YD
Sbjct: 338 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G IL+D HD++ L SLR V LVSQ++ LF+ TVA NI Y + E++E AR
Sbjct: 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART-EEYSREQIEEAARM 456
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
A A +F+ + G +T IG G LSGGQRQR+AIARAL ++S +LILDEATSALD+ SE
Sbjct: 457 AYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Query: 364 LLVRQAVDRL 373
++ A+D L
Sbjct: 517 RAIQAALDEL 526
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 398 bits (1024), Expect = e-135
Identities = 127/370 (34%), Positives = 207/370 (55%), Gaps = 4/370 (1%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M S LSL+ +V P +A I+++ +R RKIS+ ++ +++ ++L V +
Sbjct: 160 MFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLS 219
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSF 123
+ E RF ++++S + +K +++ +Q+I +L S+
Sbjct: 220 YGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAEL 279
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
+ +++ ++ P++ + +EF++G A + LF L + +
Sbjct: 280 TPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGL--MDLETERDNGKYEAER 337
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
+NG+V +++F Y L ++ I G+TVAL+G SG GKST+A L R YD S
Sbjct: 338 VNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS 397
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G I +D HDV++ +L +LRRH LVSQ++ LF+ T+A NI Y + E++E AR
Sbjct: 398 GSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAA-EGEYTREQIEQAARQ 456
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
A+A EF+ +PQG +T IG G+SLSGGQRQR+AIARAL +++ VLILDEATSALD+ SE
Sbjct: 457 AHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE 516
Query: 364 LLVRQAVDRL 373
++ A+D L
Sbjct: 517 RAIQAALDEL 526
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 386 bits (994), Expect = e-131
Identities = 130/371 (35%), Positives = 199/371 (53%), Gaps = 3/371 (0%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M + L+L + + P L + RLRK++++ ++A + +L+E + I VK+
Sbjct: 156 MFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKS 215
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSF 123
E E+ F + + L LK + A + + G + ++ G+ L GS
Sbjct: 216 FAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSI 275
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDH 183
+L +F+ L + P++ + ++ Q +++R+F L + A ++
Sbjct: 276 TVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEI 335
Query: 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
G + ++SF+Y DN +L +NL I GETVA +G SGGGKSTL L+ R YD S
Sbjct: 336 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTART 303
G IL+D H++++ SLR +GLV QD LFS TV ENI E V A+
Sbjct: 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKM 453
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363
ANA +F+ LPQGY+T +G RG LSGGQ+QRL+IAR N +LILDEATSALD SE
Sbjct: 454 ANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 513
Query: 364 LLVRQAVDRLL 374
++++A+D L
Sbjct: 514 SIIQEALDVLS 524
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 309 bits (794), Expect = e-100
Identities = 118/376 (31%), Positives = 194/376 (51%), Gaps = 15/376 (3%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
M ++ +LSL++ ++P L+ + + RK ++ + L+ + E + + +K
Sbjct: 172 MFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKL 231
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKA------LIPQTVQLIYFGALFILCGGSLLV 118
E E +F R+ E L+K KA L P + G I G L
Sbjct: 232 FTREEKEMEKFDRVN-----ESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLA 286
Query: 119 SGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDA 178
++ +FI P+ + +N + + ER+F++ + + + PDA
Sbjct: 287 LKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEK-DDPDA 345
Query: 179 VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238
V L + G+++F N+ F Y P+ L + HI+ G+ VAL+GP+G GK+T+ LL+R
Sbjct: 346 VELREVRGEIEFKNVWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
Query: 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVE 298
YD G ILVD D++ I+ SLR +G+V QD LFS TV EN+ Y + E ++
Sbjct: 405 YDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIK 462
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
A+ ++D F++ LP+GY T + G LS GQRQ LAI RA N +LILDEATS +
Sbjct: 463 EAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNV 522
Query: 359 DSRSELLVRQAVDRLL 374
D+++E ++ A+ +L+
Sbjct: 523 DTKTEKSIQAAMWKLM 538
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 293 bits (752), Expect = 5e-99
Identities = 87/198 (43%), Positives = 128/198 (64%), Gaps = 4/198 (2%)
Query: 183 HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242
H + D+ F NI F+Y + P++LD +NL I+ GE + ++G SG GKSTL KL+ R Y P
Sbjct: 3 HHHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62
Query: 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMERVEHTA 301
+G +L+D HD+ + LRR VG+V QD L + ++ +NI M+ +E+V + A
Sbjct: 63 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMS---VEKVIYAA 119
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ A A +F+ L +GYNT +G +G+ LSGGQRQR+AIARAL N +LI DEATSALD
Sbjct: 120 KLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 362 SELLVRQAVDRLLGHHTV 379
SE ++ + + ++ TV
Sbjct: 180 SEHVIMRNMHKICKGRTV 197
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 316 bits (812), Expect = 4e-98
Identities = 121/383 (31%), Positives = 190/383 (49%), Gaps = 15/383 (3%)
Query: 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKA 64
L+L+ + P + L + L + + + A A EVL AI V A
Sbjct: 203 GFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIA 262
Query: 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGAL-FILCGGSLLVSGGSF 123
+ E R+ +KK + L+ + + G+ LV +
Sbjct: 263 FGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEY 322
Query: 124 DGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKV-IEKPDAVSLD 182
+++ S++ + F A +F + K + D
Sbjct: 323 SIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPD 382
Query: 183 HINGDVKFCNISFKYADNMP-----LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237
+I G+++F NI F Y P +L LNL +++G+TVAL+G SG GKST +L+ R
Sbjct: 383 NIQGNLEFKNIHFSY----PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438
Query: 238 LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTKIDMER 296
LYDPL G + +D D++ I + LR +G+VSQ+ LF+ T+AENI Y R+ +T M+
Sbjct: 439 LYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVT---MDE 495
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
+E + ANA +F+ LP ++T +G RG+ LSGGQ+QR+AIARAL +N +L+LDEATS
Sbjct: 496 IEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATS 555
Query: 357 ALDSRSELLVRQAVDRLLGHHTV 379
ALD+ SE +V+ A+D+ T
Sbjct: 556 ALDTESEAVVQAALDKAREGRTT 578
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 311 bits (800), Expect = 2e-96
Identities = 102/378 (26%), Positives = 191/378 (50%), Gaps = 5/378 (1%)
Query: 6 LVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKAN 65
L+ L+L+ ++P +A+ + L + + + E + V +
Sbjct: 847 LIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSL 906
Query: 66 NAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGAL-FILCGGSLLVSGGSFD 124
E + + +KK + + Q + + + G+ LV+
Sbjct: 907 TREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMT 966
Query: 125 GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKV-IEKPDAVSLDH 183
+++ +++VF + V ++ + + + + + ++ + +
Sbjct: 967 FENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM 1026
Query: 184 INGDVKFCNISFKY--ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241
+ G+V+F + F Y ++P VL L+L ++ G+T+AL+G SG GKST+ +LL R YDP
Sbjct: 1027 LEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP 1085
Query: 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA 301
++G + +D +++ + + LR +G+VSQ+ LF ++AENI Y D + E + A
Sbjct: 1086 MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA 1145
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ AN +F+ +LP YNT +G +G+ LSGGQ+QR+AIARAL + +L+LDEATSALD+
Sbjct: 1146 KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 362 SELLVRQAVDRLLGHHTV 379
SE +V++A+D+ T
Sbjct: 1206 SEKVVQEALDKAREGRTC 1223
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 291 bits (748), Expect = 1e-97
Identities = 87/241 (36%), Positives = 136/241 (56%), Gaps = 3/241 (1%)
Query: 138 MIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKY 197
+E +FDL K +++V + P A L G ++F N+ F Y
Sbjct: 4 SHHHHHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSY 63
Query: 198 ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257
AD L ++ + G+T+AL+GPSG GKST+ +LL R YD SGCI +D D+ +
Sbjct: 64 ADGRE-TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT 122
Query: 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317
SLR H+G+V QD LF+ T+A+NI Y + + VE A+ A + + P+GY
Sbjct: 123 QASLRSHIGVVPQDTVLFNDTIADNIRYGRVTA--GNDEVEAAAQAAGIHDAIMAFPEGY 180
Query: 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377
T +G RG LSGG++QR+AIAR + + +++LDEATSALD+ +E ++ ++ ++ +
Sbjct: 181 RTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR 240
Query: 378 T 378
T
Sbjct: 241 T 241
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 277 bits (710), Expect = 1e-92
Identities = 78/192 (40%), Positives = 112/192 (58%), Gaps = 2/192 (1%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ ++ F Y D+ +L ++ + +A GPSGGGKST+ LL R Y P +G I
Sbjct: 2 LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307
+D + NI L++ R +G VSQD + +GT+ EN+ Y L E + A A
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTY-GLEGDYTDEDLWQVLDLAFAR 119
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367
FV +P NT +G RG +SGGQRQRLAIARA +N +L+LDEAT++LDS SE +V+
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 368 QAVDRLLGHHTV 379
+A+D L+ T
Sbjct: 180 KALDSLMKGRTT 191
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 285 bits (733), Expect = 9e-92
Identities = 104/388 (26%), Positives = 190/388 (48%), Gaps = 29/388 (7%)
Query: 6 LVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKAN 65
+ I+ LS + +IP + L+ +L ++ + ++ S ++ + E L + V+A
Sbjct: 159 VSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAF 218
Query: 66 NAEMCESARFRRLAHSDLCELLKK--RKMKALIPQTVQLIYFGALFILCGGSLLVSGGSF 123
E E+ FR+ A+ L + + +P + ++ G + +L G +LV
Sbjct: 219 RREEYENENFRK-ANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQM 277
Query: 124 DGCSLVSFIT------------SLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSK 171
+ S++++ + + +R+ ++ K
Sbjct: 278 EIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASA------------SAKRVLEVLNEKPA 325
Query: 172 VIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTL 231
+ E +A++L ++ G V F N+ F+Y +N VL +N ++ G VA++G +G GKSTL
Sbjct: 326 IEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTL 385
Query: 232 AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK 291
L+ RL DP G + VD+ DV+ ++L LR H+ V Q+ LFSGT+ EN+ +
Sbjct: 386 MNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR--ED 443
Query: 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351
+ + A+ A +F+ +LP+GY++ + G + SGGQ+QRL+IARAL + VLIL
Sbjct: 444 ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLIL 503
Query: 352 DEATSALDSRSELLVRQAVDRLLGHHTV 379
D+ TS++D +E + + R T
Sbjct: 504 DDCTSSVDPITEKRILDGLKRYTKGCTT 531
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 274 bits (702), Expect = 5e-91
Identities = 77/198 (38%), Positives = 108/198 (54%), Gaps = 10/198 (5%)
Query: 181 LDHINGDVKFCNISFKYADNMP-----LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235
++ G VKF ++SF Y P VL L + G+ AL+GP+G GKST+A LL
Sbjct: 10 PLNMKGLVKFQDVSFAY----PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 236 LRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDME 295
LY P G +L+D + L V V Q+ LF + ENI Y L ME
Sbjct: 66 QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAY-GLTRTPTME 124
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
+ A + A +F+ PQGY+T +G G+ LSGGQRQ +A+ARAL + +LILD AT
Sbjct: 125 EITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNAT 184
Query: 356 SALDSRSELLVRQAVDRL 373
SALD+ ++L V++ +
Sbjct: 185 SALDAGNQLRVQRLLYES 202
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 265 bits (681), Expect = 3e-88
Identities = 75/208 (36%), Positives = 118/208 (56%), Gaps = 6/208 (2%)
Query: 174 EKPDAVSLDHINGDVKFCNISFKY-ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLA 232
+++F +++F Y L +N I +G T AL+G +G GKST+A
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63
Query: 233 KLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY-RDLMTK 291
KLL R YD G I + +V +S+R +G+V QD LF+ T+ NI Y + T
Sbjct: 64 KLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDAT- 121
Query: 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351
E V ++A +F+ LP+ ++T +G +G LSGG+RQR+AIAR L ++ ++I
Sbjct: 122 --DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179
Query: 352 DEATSALDSRSELLVRQAVDRLLGHHTV 379
DEATS+LDS++E L ++AV+ L + T+
Sbjct: 180 DEATSSLDSKTEYLFQKAVEDLRKNRTL 207
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 4e-50
Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 4/195 (2%)
Query: 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
G + +++ KY + +L+ ++ I G+ V L+G +G GKSTL LRL + G
Sbjct: 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EG 75
Query: 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTA 304
I +D +I L+ R+ G++ Q + +FSGT +N+ D + + A
Sbjct: 76 EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL---DPNAAHSDQEIWKVADEV 132
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364
+ P + + G LS G +Q + +AR++ + +L+LDE ++ LD +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 365 LVRQAVDRLLGHHTV 379
++R+ + + TV
Sbjct: 193 IIRRTLKQAFADCTV 207
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 4e-37
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 26/197 (13%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+K +++ Y+D L +N++I+ GE A++G +G GKSTL + + P SG IL
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 248 VDDHDVQNIR--LDSLRRHVGLVSQ--DITLFSGTVAE-------NIGYRDLMTKIDMER 296
D+ + R + LR +G+V Q D LFS +V + N+ + + +R
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIR---KR 123
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
V++ + + LS GQ++R+AIA L VLILDE T+
Sbjct: 124 VDNALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTA 172
Query: 357 ALDSRSELLVRQAVDRL 373
LD + + + +
Sbjct: 173 GLDPMGVSEIMKLLVEM 189
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 9e-37
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 20/188 (10%)
Query: 187 DVKFCNISFKYADNMPL---VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS 243
++ N+S + PL L+ ++L I GE + + G +G GKSTL +++ L +P S
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 244 GCILVDDHDVQNIRLDSLRRHVGLVSQ--DITLFSGTVAENIGY--RDLMTKIDMERVEH 299
G +L D + + +RR++G+ Q + F+ V + + + ++ D
Sbjct: 62 GDVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVP--- 115
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A EFV + P LSGG+++R+AIA + +LILDE LD
Sbjct: 116 --LVKKAMEFVGLDFDSFKDR-VP--FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170
Query: 360 --SRSELL 365
+++LL
Sbjct: 171 REGKTDLL 178
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 6e-36
Identities = 42/199 (21%), Positives = 71/199 (35%), Gaps = 26/199 (13%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ I +L +++ I G+ L G +G GK+TL +L SG +
Sbjct: 22 IQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 248 VDDHDVQNIRLD--SLRRHVGLVSQDITL---FSGTVAEN--------IGYRDLMTKIDM 294
+ + ++R+H+G VS + V + IG +
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354
+ + LS G++QR+ IARAL VLILDE
Sbjct: 140 NEAHQLLKLVGMSAKAQQYI-----------GYLSTGEKQRVMIARALMGQPQVLILDEP 188
Query: 355 TSALDSRSELLVRQAVDRL 373
+ LD + + +D L
Sbjct: 189 AAGLDFIARESLLSILDSL 207
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 9e-36
Identities = 37/185 (20%), Positives = 74/185 (40%), Gaps = 25/185 (13%)
Query: 188 VKFCNISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
++ N+ + L+ +NL + GE V ++GP+G GK+TL + + L P SG
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG--TVAENIGYRDLMTKIDMERVEHTART 303
I ++ +V+ +R ++ + + TV + + + + +D + +
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 304 AN-ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD--S 360
+E +R LS GQ + + AL ++ LDE +D
Sbjct: 115 LKLGEEILRRKL-----------YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 361 RSELL 365
R +
Sbjct: 164 RHVIS 168
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-34
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 19/197 (9%)
Query: 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244
+V N++ + + VL +N I G+ +A+ G +G GK++L +++ +P G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-IDMERVEHTART 303
I + SQ + GT+ ENI + D R +
Sbjct: 64 KIKH-------------SGRISFCSQFSWIMPGTIKENI----IFGVSYDEYRYRSVIKA 106
Query: 304 ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR-S 362
+E + + N +G G +LSGGQR R+++ARA+Y+++ + +LD LD
Sbjct: 107 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 363 ELLVRQAVDRLLGHHTV 379
+ + V +L+ + T
Sbjct: 167 KEIFESCVCKLMANKTR 183
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 2e-32
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 18/176 (10%)
Query: 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+ N +F +A + P L+ + I G VA++G G GKS+L LL D + G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-IDMERVEHTARTA 304
+ + + V V Q + + ++ ENI L ++ +
Sbjct: 62 VAI-------------KGSVAYVPQQAWIQNDSLRENI----LFGCQLEEPYYRSVIQAC 104
Query: 305 NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
+ LP G T IG +G +LSGGQ+QR+++ARA+Y N+ + + D+ SA+D+
Sbjct: 105 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 7e-31
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++F + Y + ++ IR GE V L+GPSG GK+T+ +L+ L P G +
Sbjct: 15 IEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANA 306
+ V + L +R+VGLV Q+ LF TV +N+ + ++ + E AR
Sbjct: 74 IGGKRVTD--LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVP--KDEMDARVREL 129
Query: 307 DEFVRTLPQGYNTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
F+R R LSGGQ+QR+A+ARAL VL+ DE +A+D
Sbjct: 130 LRFMRL------ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-30
Identities = 50/247 (20%), Positives = 97/247 (39%), Gaps = 39/247 (15%)
Query: 139 IEPIQGVGKAYNEFKQGE-PAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKY 197
+ N F +G PA + K + E D + +K+ I K
Sbjct: 220 VSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKL 279
Query: 198 ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV---- 253
D L N + GE + ++GP+G GK+T A++L+ G + + +
Sbjct: 280 GDF---QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKP 336
Query: 254 QNIRLD---SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
Q I + ++++++ S+D S E + +R+
Sbjct: 337 QRIFPNYDGTVQQYLENASKDALSTSSWFFEEV----------TKRLN------------ 374
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
L + +++ + LSGG+ Q+L IA L + + + +LD+ +S LD +V +A+
Sbjct: 375 --LHRLLESNV----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAI 428
Query: 371 DRLLGHH 377
R+
Sbjct: 429 KRVTRER 435
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 6e-21
Identities = 40/199 (20%), Positives = 79/199 (39%), Gaps = 23/199 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHI-RAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILV 248
+ +Y N L + + ++G +G GK+T+ K+L P G V
Sbjct: 4 EVIHRYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV 60
Query: 249 DDHDV-QNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-------DMERVEHT 300
+V + R + + + + + I Y + +K + +++
Sbjct: 61 GKDEVLKRFRGKEIYNYFKELYSNEL----KIVHKIQYVEYASKFLKGTVNEILTKIDER 116
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
+ E + + +N + LSGG QRL +A +L + + V I D+ +S LD
Sbjct: 117 GKKDEVKELL-NMTNLWNKDA----NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDV 171
Query: 361 RSELLVRQAVDRLLGHHTV 379
R + + +A+ LL + V
Sbjct: 172 RERMNMAKAIRELLKNKYV 190
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-30
Identities = 62/178 (34%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Query: 188 VKFCNIS--FKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+K NI+ F L+ ++LH+ AG+ +IG SG GKSTL + + L P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 246 ILVDDHDVQNIR---LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTA 301
+LVD ++ + L RR +G++ Q L S TV N+ + + + E
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP--LELDNTPKDEVKR 142
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
R V G S+LSGGQ+QR+AIARAL N VL+ D+ATSALD
Sbjct: 143 RVTELLSLV-----GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-30
Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 22/217 (10%)
Query: 164 DLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGP 223
+ K + + + + + F N S VL +N I G+ +A+ G
Sbjct: 17 GFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGS 72
Query: 224 SGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283
+G GK++L +++ +P G I + SQ+ + GT+ ENI
Sbjct: 73 TGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISFCSQNSWIMPGTIKENI 119
Query: 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343
+ D R + +E + + N +G G +LSGGQR R+++ARA+Y
Sbjct: 120 ----IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY 175
Query: 344 QNSSVLILDEATSALDSR-SELLVRQAVDRLLGHHTV 379
+++ + +LD LD + + V +L+ + T
Sbjct: 176 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 5e-30
Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
N+ F Y + QLN + G+ +A++G +G GKSTL LLL ++ P+ G I
Sbjct: 9 NLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI----- 62
Query: 252 DVQNIRLDSLRRHVGLVSQDITL-FSGTVAE--------NIGYRDLMTKIDMERVEHTAR 302
+ + +G V Q + F+ +V + +I D +
Sbjct: 63 --------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALD 114
Query: 303 TANADEFV-RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
N R +SLSGGQRQ + IARA+ +++LDE TSALD
Sbjct: 115 YLNLTHLAKREF------------TSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 362 SELLVRQAVDRL 373
++ +V + L
Sbjct: 163 NQDIVLSLLIDL 174
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 9e-30
Identities = 44/233 (18%), Positives = 86/233 (36%), Gaps = 31/233 (13%)
Query: 148 AYNEFKQGEPAIERL-FDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLD 206
N F G E L F + ++ + + + D + + ++ D VL+
Sbjct: 313 GINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDF---VLN 369
Query: 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266
E + ++G +G GK+TL KLL P G D+ + + + +
Sbjct: 370 VEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG------QDIPKLNVSMKPQKIA 423
Query: 267 LVSQDIT--LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324
LF + ++ + + D+ + Q
Sbjct: 424 PKFPGTVRQLFFKKIRGQF--------LNPQFQTDVVKPLRIDDIIDQEVQ--------- 466
Query: 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377
LSGG+ QR+AI AL + + ++DE ++ LDS ++ + + R + H+
Sbjct: 467 --HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN 517
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 6e-25
Identities = 42/195 (21%), Positives = 78/195 (40%), Gaps = 20/195 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI---LV 248
+++ +Y+ N L +L R G+ + L+G +G GKST K+L P G
Sbjct: 82 HVTHRYSAN-SFKLHRLPT-PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPE 139
Query: 249 DDHDVQNIRLDSLRRHVGLVSQDI--TLFSGTVAENIGYR---DLMTKIDMERVEHTART 303
++ R L+ + + +D + +NI + ++ ++
Sbjct: 140 WQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSP 199
Query: 304 ANADEFVRTLPQGYNTHIGPRG----SSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ +++ L + LSGG+ QR AI + Q + V + DE +S LD
Sbjct: 200 EDVKRYIKIL------QLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
Query: 360 SRSELLVRQAVDRLL 374
+ L Q + LL
Sbjct: 254 VKQRLNAAQIIRSLL 268
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-29
Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 38/233 (16%)
Query: 150 NEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGD--VKFCNISFKYADNMPLVLDQ 207
NEF QG E + +F+ I + + V++ + Y L+
Sbjct: 322 NEFLQGYLKDENV----RFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF---KLEV 374
Query: 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV---QNIRLDSLRRH 264
IR GE + ++GP+G GK+T K+L + +P G + D Q I+ +
Sbjct: 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAE----- 429
Query: 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324
+ GTV +L++KID ++ + + + Y+ ++
Sbjct: 430 ----------YEGTV------YELLSKIDSSKLNSNFYKTELLKPLG-IIDLYDRNV--- 469
Query: 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377
LSGG+ QR+AIA L +++ + +LDE ++ LD L V +A+ L+ +
Sbjct: 470 -EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN 521
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 35/199 (17%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP------LSGC 245
+ +Y N VL +L + ++ G V ++GP+G GK+T K+L P S
Sbjct: 96 DCVHRYGVNA-FVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDI---------TLFSGTVAENIGYRDLMTKID-ME 295
++ ++ R G + + G V E L+ K+D +
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE------LLKKVDEVG 207
Query: 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355
+ E + L + + LSGG+ QR+AIA AL + + DE +
Sbjct: 208 KFEEVVKELE-------LENVLDRELH----QLSGGELQRVAIAAALLRKAHFYFFDEPS 256
Query: 356 SALDSRSELLVRQAVDRLL 374
S LD R L V + + RL
Sbjct: 257 SYLDIRQRLKVARVIRRLA 275
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-29
Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 18/174 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ ++S K+ + LD L+L + +GE ++GP+G GK+ +L+ + P SG IL
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM-ERVEHTARTAN 305
+D DV ++ + + V Q+ +LF V +N+ + M KI +RV TAR
Sbjct: 59 LDGKDVTDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+ + P +LSGG++QR+A+ARAL N +L+LDE SALD
Sbjct: 117 IEHLLDRNP-----------LTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 4e-29
Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 38/244 (15%)
Query: 139 IEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGD--VKFCNISFK 196
+G NEF +G E + +F+ I+ I + V + +
Sbjct: 241 FSQPKGTRNGINEFLRGYLKDENV----RFRPYEIKFTKTGERVEIERETLVTYPRLVKD 296
Query: 197 YADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV--- 253
Y L+ I+ GE + ++GP+G GK+T K+L + +P G I D
Sbjct: 297 YGSF---RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKP 353
Query: 254 QNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTL 313
Q I+ D + GTV +L++KID ++ + + +
Sbjct: 354 QYIKAD---------------YEGTV------YELLSKIDASKLNSNFYKTELLKPLG-I 391
Query: 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
Y+ + + LSGG+ QR+AIA L +++ + +LDE ++ LD L V +A+ L
Sbjct: 392 IDLYDREV----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Query: 374 LGHH 377
+ +
Sbjct: 448 MEKN 451
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 7e-23
Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 33/198 (16%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP------LSGC 245
+ +Y N VL +L + ++ G V ++GP+G GKST K+L P S
Sbjct: 26 DCVHRYGVNA-FVLYRLPV-VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 246 ILVDDHDVQNIRLDSLRRHVGLVSQDI---------TLFSGTVAENIGYRDLMTKIDMER 296
++ ++ + G + + G V E + D + +
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-----ETGK 138
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
+E + + + LSGG+ QR+AIA AL +N++ DE +S
Sbjct: 139 LEEVVKALELENVLEREI-----------QHLSGGELQRVAIAAALLRNATFYFFDEPSS 187
Query: 357 ALDSRSELLVRQAVDRLL 374
LD R L +A+ RL
Sbjct: 188 YLDIRQRLNAARAIRRLS 205
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 5e-29
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 23/179 (12%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
L L+ +RAGE + L+GP+G GKSTL + + G I ++ L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 264 HVGLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV-RTLPQGYNTHI 321
H +SQ T F+ V + K E + A D+ + R+ Q
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLT-LHQHDKTRTELLNDVAGALALDDKLGRSTNQ------ 126
Query: 322 GPRGSSLSGGQRQRLAIARALYQ-------NSSVLILDEATSALDSRSELLVRQAVDRL 373
LSGG+ QR+ +A + Q +L+LDE ++LD + + + + L
Sbjct: 127 ------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-28
Identities = 62/164 (37%), Positives = 80/164 (48%), Gaps = 19/164 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSL 261
VL +N+HIR GE V +IGPSG GKST + L L D G I++D +++ L+ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDME---RVEHTARTANADEFVRTLPQ-- 315
R VG+V Q LF TV NI +V R A+ L
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNI----------TLAPMKVRKWPR-EKAEAKAMELLDKV 147
Query: 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
G SLSGGQ QR+AIARAL +++ DE TSALD
Sbjct: 148 GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-28
Identities = 36/179 (20%), Positives = 76/179 (42%), Gaps = 20/179 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
VL+++ + I G V GP+G GK+TL K + PL G I+ + + + +
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV-----KG 78
Query: 264 HVGLVSQDITLFSG-TVAENIGY-RDLM-TKIDMERVEHTARTANADEFVRTLPQGYNTH 320
+ + ++I + +V + + L K++ + + + + L
Sbjct: 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKL------- 131
Query: 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTV 379
LS G +R+ +A L N+ + +LD+ A+D S+ V +++ +L +
Sbjct: 132 -----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 3e-28
Identities = 57/181 (31%), Positives = 83/181 (45%), Gaps = 24/181 (13%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR----LYDPLSGCILVDDHDV--QNIR 257
VL+ ++L + GE + +IG SG GK+TL LR P SG I + + +N
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTL----LRCLAGFEQPDSGEISLSGKTIFSKNTN 74
Query: 258 LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQG 316
L R +G + Q+ LF TV NI Y K + R E +
Sbjct: 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK--GRTAQERQRIEAMLELTG-IS-- 129
Query: 317 YNTHIGPRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALDS--RSELLVRQAVDRL 373
+ R LSGGQ+QR A+ARAL + +++LDE SALD R ++ R+ +
Sbjct: 130 ---ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI--REDMIAA 184
Query: 374 L 374
L
Sbjct: 185 L 185
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 9e-28
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 11/172 (6%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263
+L ++ I GE LIGP+G GK+T +++ L P SG + V +V +R+
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 264 HVGLVSQDITLFSG-TVAENIGYRDLMTKI-DMERVEHTARTANADEFVRTLPQGYNTHI 321
+ + ++ + E + + E A E G I
Sbjct: 89 LISYLPEEAGAYRNMQGIEYL---RFVAGFYASSSSEIEEMVERATEIA-----GLGEKI 140
Query: 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373
R S+ S G ++L IARAL N + ILDE TS LD + VR+ + +
Sbjct: 141 KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-27
Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 25/192 (13%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
+ N+S + + LD +N++I GE ++GPSG GK+T +++ L P +G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 247 LVDDHDVQNIRLDSL---RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVE 298
DD V + + R +G+V Q L+ T ENI + K+ +RVE
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
A+ + + P LSG Q+QR+A+ARAL ++ S+L+LDE S L
Sbjct: 123 EVAKILDIHHVLNHFP-----------RELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 359 DS------RSEL 364
D+ R+ +
Sbjct: 172 DARMRDSARALV 183
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-26
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 35/178 (19%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR------ 257
VL ++L RAG+ +++IG SG GKST + + L P G I+V+ ++ +R
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 258 -------LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDME---RVEHTAR---T 303
L LR + +V Q L+S TV EN+ ME +V ++
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV----------MEAPIQVLGLSKHDAR 130
Query: 304 ANADEFVRT--LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A +++ + + P LSGGQ+QR++IARAL VL+ DE TSALD
Sbjct: 131 ERALKYLAKVGIDERAQGKY-P--VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 6e-26
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 19/158 (12%)
Query: 207 QLNLHIRAG-ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265
+LN+ G + L+GP+G GKS +L+ + P G + ++ D+ + RR +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGI 72
Query: 266 GLVSQDITLFSG-TVAENIGY--RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
G V QD LF +V NI Y R+ +ERVE R E + H+
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRN------VERVERDRRVREMAEKLGI------AHLL 120
Query: 323 PRG-SSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
R + LSGG+RQR+A+ARAL +L+LDE SA+D
Sbjct: 121 DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 3e-25
Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 18/186 (9%)
Query: 188 VKFCNI--SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
VK N+ ++K + + L +NL+I+ GE V+++GPSG GKST+ ++ L P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 246 ILVDDHDVQNIRLDSL----RRHVGLVSQDITLFSG-TVAENIG----YRDLMTKIDMER 296
+ +D+ ++ D L R +G V Q L T EN+ ++ + M
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKY---RGAMSG 118
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
E R + L + + H + + LSGGQ+QR+AIARAL N +++ D+ T
Sbjct: 119 EERRKRALECLKMAE-LEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTW 174
Query: 357 ALDSRS 362
ALDS++
Sbjct: 175 ALDSKT 180
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 5e-25
Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-- 261
+L ++L ++ GE V++IG SG GKSTL +L L P G + ++ +V L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 262 --RRHVGLVSQDITLFSG-TVAENIG----YRDLMTKIDMERVEHTARTANADEFVRTLP 314
R +G V Q L T EN+ + E R +
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMG------KPKKEAKERGEYLLSEL---- 128
Query: 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
G + + LSGG++QR+AIARAL +L DE T LDS +
Sbjct: 129 -GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 2e-22
Identities = 70/189 (37%), Positives = 100/189 (52%), Gaps = 26/189 (13%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
++K NI K+ + L+ +NL I+ GE +AL+GPSG GKSTL + +Y P SG I
Sbjct: 3 EIKLENIVKKFGNF--TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKID----MERVEHTA 301
D+ DV L R+VGLV Q+ L+ TV +NI + + K ++V A
Sbjct: 61 YFDEKDVTE--LPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVA 118
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS- 360
+ + D+ + P LSGGQ+QR+AIARAL + VL+LDE S LD+
Sbjct: 119 KMLHIDKLLNRYP-----------WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDAL 167
Query: 361 -----RSEL 364
R+EL
Sbjct: 168 LRLEVRAEL 176
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 3e-20
Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 26/189 (13%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
++ N+ + +D ++ ++ GE VAL+GPSG GK+T +L +Y P SG I
Sbjct: 3 SIRVVNLKKYFGKV--KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKID----MERVEHTA 301
DD V + + R VG+V Q+ L+ TV ENI + +I +RV A
Sbjct: 61 YFDDVLVND--IPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIA 118
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS- 360
R D + P + LSGGQ+QR+A+ARAL + VL+ DE S LD+
Sbjct: 119 RKLLIDNLLDRKP-----------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDAN 167
Query: 361 -----RSEL 364
R+E+
Sbjct: 168 LRMIMRAEI 176
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 3e-20
Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 20/178 (11%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
+VK N++ ++ + +++LNL I+ GE + L+GPSG GK+T +++ L +P G I
Sbjct: 11 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKID----MERVEHTA 301
D DV L R++ +V Q ++ TV ENI + + K +RV A
Sbjct: 69 YFGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 126
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
+E + P + LSGGQRQR+A+ARA+ VL++DE S LD
Sbjct: 127 ELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 1e-19
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
V+ ++ + + + +++L ++ GE + L+GPSG GK+T +++ L +P G I
Sbjct: 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 247 LVDDHDVQNIRLDSLR----RHVGLVSQDITLF-SGTVAENIGYRDLMTKID----MERV 297
+ D V + R + +V Q L+ TV +NI + + K+ +RV
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
A E + P LSGGQRQR+A+ RA+ + V ++DE S
Sbjct: 121 REVAELLGLTELLNRKP-----------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 358 LD 359
LD
Sbjct: 170 LD 171
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 1e-17
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 37/167 (22%)
Query: 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL- 261
+ ++L + G+ V LIG +G GK+T + L G I+ + D+ N +
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79
Query: 262 RRHVGLVSQDITLFSG-TVAENI---GYR---DLMTKIDMERVEHTARTANADEFVRTLP 314
R + LV + +F TV EN+ Y K D+E + F
Sbjct: 80 RMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI--------FSLF----- 126
Query: 315 QGYNTHIGPR--------GSSLSGGQRQRLAIARALYQNSSVLILDE 353
PR G +LSGG++Q LAI RAL +L++DE
Sbjct: 127 --------PRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 1e-17
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 20/163 (12%)
Query: 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264
LD +++ + G+ +IGP+G GKSTL ++ G + ++ D+ N L +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 265 VGLVS--QDITLFSG-TVAENI----------GYRDLMTKIDM-ERVEHTARTANADEFV 310
G+V Q TV EN+ L K + + E + EF+
Sbjct: 83 -GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353
+ + LSGGQ + + I RAL N ++++DE
Sbjct: 142 -----KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 179
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 3e-16
Identities = 58/183 (31%), Positives = 83/183 (45%), Gaps = 30/183 (16%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR----LYDPL 242
V+ N++ + + + V +NL I GE V +GPSG GKSTL LR L
Sbjct: 3 SVQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTL----LRMIAGLETIT 56
Query: 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTK-----IDMER 296
SG + + + + + R VG+V Q L+ +VAEN+ + + I+ +R
Sbjct: 57 SGDLFIGEKRMND--TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN-QR 113
Query: 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356
V A + P +LSGGQRQR+AI R L SV +LDE S
Sbjct: 114 VNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162
Query: 357 ALD 359
LD
Sbjct: 163 NLD 165
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 1e-12
Identities = 64/377 (16%), Positives = 123/377 (32%), Gaps = 64/377 (16%)
Query: 7 VISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSA----------YLNEVL 56
V LS++ + L+ L ER I ++S + I ++ +L ++L
Sbjct: 244 VTPATLSIM-------VPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLL 296
Query: 57 PAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFILC---- 112
P + A A+ E+ A L + + A+ + L ++
Sbjct: 297 PGLKSNFATIADP-EAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLK 355
Query: 113 ---GGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFK 169
+ I + + Y E + + D + +
Sbjct: 356 DETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKR 415
Query: 170 SKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKS 229
+ D + CN F A ++L++ L ++ + GP+G GKS
Sbjct: 416 AVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKS 475
Query: 230 TLAKLLLRLYDPLSGCILVDDHDVQ-NIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL 288
TL + + VD Q R + + D ++ +G ++
Sbjct: 476 TLMRAIANGQ--------VDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEA 527
Query: 289 MTKI------DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342
+ E + S+LSGG + +LA+ARA+
Sbjct: 528 IKDKLIEFGFTDEMIAMPI------------------------SALSGGWKMKLALARAV 563
Query: 343 YQNSSVLILDEATSALD 359
+N+ +L+LDE T+ LD
Sbjct: 564 LRNADILLLDEPTNHLD 580
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 6e-08
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
VK N+ F+Y + +N +A+IGP+G GKSTL +L P SG +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 248 VDDH 251
++
Sbjct: 732 THEN 735
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 9e-07
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
LSGGQ+ +L +A +Q +++LDE T+ LD
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 4e-11
Identities = 48/324 (14%), Positives = 96/324 (29%), Gaps = 107/324 (33%)
Query: 85 ELLKKRKMKALI--PQTVQLIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLV-----F 137
+L K ++ +I V LF LL + F+ ++ F
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLR--LFWT----LLSKQEE----MVQKFVEEVLRINYKF 93
Query: 138 MIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISF-K 196
++ PI+ E +Q P++ + + D + D + F K
Sbjct: 94 LMSPIK------TEQRQ--PSMMT----RMYIEQR---------DRLYNDNQ----VFAK 128
Query: 197 YADNMPLVLDQLN---LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253
Y + +L L +R + V + G G GK+ +A + + V
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL------------SYKV 176
Query: 254 QN--------IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTAN 305
Q + L + ++ L + R +H++
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-----------QIDPNWTSRSDHSSN--- 222
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD-----EATSALDS 360
+ + S R + Y+N +L+L +A +A +
Sbjct: 223 -------IKLRIH----------SIQAELRRLLKSKPYEN-CLLVLLNVQNAKAWNAFNL 264
Query: 361 RSELLV----RQAVDRLLGHHTVR 380
++L+ +Q D L T
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTH 288
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 1e-04
Identities = 56/372 (15%), Positives = 108/372 (29%), Gaps = 120/372 (32%)
Query: 4 QMLVISP-VLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFV 62
++L +P LS+I+ + +A + + ++ +I S LN + PA
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATW-----DNWKHVNCDKLTTIIESS--LNVLEPAEY-- 371
Query: 63 KANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTV------QLIYFGALFILCGGSL 116
F RL+ + A IP + +I + ++
Sbjct: 372 ---------RKMFDRLS------VFPP---SAHIPTILLSLIWFDVIKSDVMVVV----- 408
Query: 117 LVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLT-KFKSKVIEK 175
L + SLV KQ + + + + + K K+ +
Sbjct: 409 ---------NKLHKY--SLV---------------EKQPKESTISIPSIYLELKVKLENE 442
Query: 176 PD--AVSLDHINGDVKFCNISFKYADNMPLVLDQ-----LNLHIRAGETVALIGPSGGGK 228
+DH N F + D +P LDQ + H++ E
Sbjct: 443 YALHRSIVDHYNIPKTFDS-----DDLIPPYLDQYFYSHIGHHLKNIE-----------H 486
Query: 229 STLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL 288
L ++ +D ++ ++ RH T+ + Y+
Sbjct: 487 PERMTLFRMVF--------LDFRFLEQ-KI----RHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 289 MTKIDMERVEHTARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347
+ D R NA +F+ + N L R+A+
Sbjct: 534 ICDND----PKYERLVNAILDFLPKI--EENLICSKYTDLL------RIAL-----MAED 576
Query: 348 VLILDEATSALD 359
I +EA +
Sbjct: 577 EAIFEEAHKQVQ 588
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL--RLYDPLSGCILVDDHDVQNIRLDSL 261
+L +NL + GE AL+GP+G GKSTL K+L Y G IL+D ++ + D
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE- 76
Query: 262 RRHVGL 267
R GL
Sbjct: 77 RARKGL 82
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL--RLYDPLSGCILVDDHDV 253
+L L+L + GE A++GP+G GKSTL+ L Y+ G + D+
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 9e-05
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 285 YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRG-----SSLSGGQRQ----- 334
+ ++ E ++ VR + G + LSGG+R
Sbjct: 201 ALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLA 260
Query: 335 -RLAIARALYQNSSVLILDEATSALDS--RSELL 365
RLA++ L S+LILDE T LD R +L+
Sbjct: 261 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI 294
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.94 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.94 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.93 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.93 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.93 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.92 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.92 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.91 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.9 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.9 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.9 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.9 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.89 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.88 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.86 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.85 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.84 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.84 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.83 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.83 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.83 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.82 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.81 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.8 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.8 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.79 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.78 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.78 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.75 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.75 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.75 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.74 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.74 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.73 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.73 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.72 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.72 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.72 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.71 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.7 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.7 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.69 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.69 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.68 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.67 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.65 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.65 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.64 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.64 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.63 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.62 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.62 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.61 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.61 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.59 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.58 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.57 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.56 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.55 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.54 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.51 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.51 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.5 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.48 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.48 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.47 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.45 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.44 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.44 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.43 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.42 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.41 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.38 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.37 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.35 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.35 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.35 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.33 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.32 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.31 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.3 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 99.27 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.27 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.26 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.26 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.24 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.2 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.19 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.19 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 99.17 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 99.13 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.13 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.12 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.11 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.1 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 99.09 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.05 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.02 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.0 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 99.0 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.96 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.93 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.92 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.82 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.79 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.76 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.75 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.75 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.73 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.71 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.7 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.68 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.67 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.67 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.65 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.62 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.6 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.59 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.57 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.54 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.52 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.46 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.39 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.39 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.34 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.3 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.3 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.29 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.26 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.21 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.16 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.15 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.15 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.06 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.97 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.92 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.92 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.9 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.89 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.86 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.86 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.79 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.78 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.78 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.78 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.77 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.75 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.75 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.72 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.72 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.7 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.65 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.62 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.6 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.59 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.58 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.55 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.49 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.47 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.41 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.41 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.39 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.37 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.35 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.35 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.34 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.31 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.28 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.28 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.25 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.24 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.23 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.22 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.21 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.19 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.18 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.17 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.14 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.12 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.06 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.06 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.03 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 97.0 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.99 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.99 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.92 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.92 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.9 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.88 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.86 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.84 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.83 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.83 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.82 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.79 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.78 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.74 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.73 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.73 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.73 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.72 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.69 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.67 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.61 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.61 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.61 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.61 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.6 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.58 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.57 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.57 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.54 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.51 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.49 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.47 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.43 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.38 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.34 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.33 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.31 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.28 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.26 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.24 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.24 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.23 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.22 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.21 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.19 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.19 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.18 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.17 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.17 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.17 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.17 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.16 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.16 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.15 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.14 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.13 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.13 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.12 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.11 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.11 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.09 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.09 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.08 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.07 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.07 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.07 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.07 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.06 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.06 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.06 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.05 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.04 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.02 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.01 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.01 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.99 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.98 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.98 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.98 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.96 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.96 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.95 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.94 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.93 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.93 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.93 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.91 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.9 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.9 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.89 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.88 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.87 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.87 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.86 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.86 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.86 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.85 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.82 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.82 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.8 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.8 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.8 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.78 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.77 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.76 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.75 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.75 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.74 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.73 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.71 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.7 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.7 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.69 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.68 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.68 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.68 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.62 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.6 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.6 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.57 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.57 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.57 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.57 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.56 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.55 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.54 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.54 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.53 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.53 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.53 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.53 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.52 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.52 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.52 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.5 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.5 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.5 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.5 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.49 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.49 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.48 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.47 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.46 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.45 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.44 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.44 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.43 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.42 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.42 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.41 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.41 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.4 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.39 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.39 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.37 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.36 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.36 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.36 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.35 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.32 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.31 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.31 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.3 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.3 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.3 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.3 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.29 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.28 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.27 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.25 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.25 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.24 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.24 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.24 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.23 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.22 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.22 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.22 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.22 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.21 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.19 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.19 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.16 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.16 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.16 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.13 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.12 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 95.11 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.09 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.09 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.07 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.07 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.06 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.06 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.06 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.04 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.0 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.0 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 94.94 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 94.93 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 94.9 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.9 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 94.89 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 94.88 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 94.87 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 94.81 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 94.74 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.7 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 94.69 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 94.68 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 94.65 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 94.63 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 94.59 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.58 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.57 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 94.56 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 94.51 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 94.39 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 94.34 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 94.3 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.28 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.12 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 94.1 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.08 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.03 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.03 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 93.95 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 93.9 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 93.88 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 93.82 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 93.8 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 93.79 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 93.77 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 93.75 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 93.7 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 93.66 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 93.65 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 93.65 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 93.58 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 93.58 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 93.57 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 93.57 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.65 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 93.5 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 93.5 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 93.49 | |
| 3l0o_A | 427 | Transcription termination factor RHO; helicase, RH | 93.47 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 93.47 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 93.41 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 93.31 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 93.26 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 93.24 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 93.14 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 93.14 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 93.13 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-75 Score=650.53 Aligned_cols=377 Identities=32% Similarity=0.425 Sum_probs=341.4
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.+++++++++|+++++..++.+++++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++.
T Consensus 229 i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 308 (1321)
T 4f4c_A 229 IVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEA 308 (1321)
T ss_dssp HHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+......+......+ ..+..++++++|++++..|.+++|.+++++.++..+..|+..++..+..++++..+++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~r 388 (1321)
T 4f4c_A 309 KKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASG 388 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666665555444433332 34456777889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCC-CCCCCCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 162 LFDLTKFKSKVIEKPD-AVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.++++.+++...... .....+..++|+|+||+|+||+. +.++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 389 i~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 389 IYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp HHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred HHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 9999987665433222 22223346789999999999864 457999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||+|+++++.+++|++|+||+|+|+||++||+|||+||++ +.++++++++|+.++++++++.||+||||
T Consensus 469 ~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~--~~~~~~v~~a~~~a~l~~~i~~lp~G~~T 546 (1321)
T 4f4c_A 469 DVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE--GITREEMVAACKMANAEKFIKTLPNGYNT 546 (1321)
T ss_dssp CCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHHSTTTTSS
T ss_pred ccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc--cchHHHHHHHHHHccchhHHHcCCCCCcc
Confidence 9999999999999999999999999999999999999999999999986 46899999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.|||+|.+||||||||||||||+++||+|||||||||+||+++|+.++++|+++.++||+|.
T Consensus 547 ~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~ii 608 (1321)
T 4f4c_A 547 LVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTII 608 (1321)
T ss_dssp EESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEE
T ss_pred EecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999984
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-73 Score=589.83 Aligned_cols=377 Identities=28% Similarity=0.464 Sum_probs=336.4
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++.
T Consensus 156 ~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 235 (587)
T 3qf4_A 156 VMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESL 235 (587)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+.......+.. +..+..++++++|++++..|.+++|.++++..+...+..|+..++..+..++++..+.+|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r 315 (587)
T 3qf4_A 236 RRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKR 315 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666665554444333332 223446677888999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..+.......+...+.|+++||+|+|+++++++|+|+||+|++||++|||||||||||||+++|+|+++|
T Consensus 316 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 316 VLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp HHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred HHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 99999876543322222222234568999999999986666799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||+|+.+++.+++|++|+||||+|++|++||+||+.++.+ ..+++++.++++.++++++++.+|+|+||.+
T Consensus 396 ~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~ 473 (587)
T 3qf4_A 396 ERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRV 473 (587)
T ss_dssp SEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS--SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEE
T ss_pred CCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC--CCCHHHHHHHHHHhCcHHHHHhcccchhhHh
Confidence 99999999999999999999999999999999999999999999875 3578999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+||||||||++||||++++|+|+|||||||+||+++++.+++.++++.+++|+|.
T Consensus 474 ~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 533 (587)
T 3qf4_A 474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFI 533 (587)
T ss_dssp CSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEE
T ss_pred cCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988999874
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-73 Score=590.66 Aligned_cols=377 Identities=35% Similarity=0.535 Sum_probs=338.7
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+++++++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++.
T Consensus 154 ~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 233 (578)
T 4a82_A 154 SIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNF 233 (578)
T ss_dssp HHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+........... ..+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..++++..+++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r 313 (578)
T 4a82_A 234 LTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666555544444333 23445677888999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..+.....+.+...+.|+++||+|+|+++++++|+|+||+|++||++|||||||||||||+++|+|+++|
T Consensus 314 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 314 VFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp HHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred HHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 99999876553322222222334568999999999987556799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+.+++.+++|++++||||+|++|++|++||+.++.+ ..+++++.++++.++++++++++|+|+||.+
T Consensus 394 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~ 471 (578)
T 4a82_A 394 TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEV 471 (578)
T ss_dssp SEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS--SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC
T ss_pred CCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhCcchhhhhh
Confidence 99999999999999999999999999999999999999999999875 3578999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|.
T Consensus 472 ~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~ 531 (578)
T 4a82_A 472 GERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLI 531 (578)
T ss_dssp CGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEE
T ss_pred ccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988899874
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-72 Score=579.74 Aligned_cols=376 Identities=35% Similarity=0.537 Sum_probs=335.3
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++.
T Consensus 158 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 237 (582)
T 3b5x_A 158 TLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSM 237 (582)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 46788999999999999999998888899999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+...+...+..++ .+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~r 317 (582)
T 3b5x_A 238 RQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQT 317 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666555544444332 3445667788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++.... ..+.+...+.|+++||+|+|+++++++|+|+||+|++||++|||||||||||||+++|+|+++|
T Consensus 318 i~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 318 LFGLMDLETERDNG--KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred HHHHHcCCCcCCCC--CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 99999866543211 1111223467999999999985435799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+.+.+..++|++++||||+|++|++|++||+.++.. .+.++++++++++.++++++++++|+||||.+
T Consensus 396 ~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~ 474 (582)
T 3b5x_A 396 DSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE-GEYTREQIEQAARQAHAMEFIENMPQGLDTVI 474 (582)
T ss_pred CCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCC-CCCCHHHHHHHHHHCCCHHHHHhCcccccchh
Confidence 99999999999999999999999999999999999999999999861 13578899999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|.
T Consensus 475 ~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 534 (582)
T 3b5x_A 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLV 534 (582)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988899874
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-74 Score=640.93 Aligned_cols=379 Identities=29% Similarity=0.398 Sum_probs=324.7
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+++++++|.+++++++++|+++++..++.++..+...+..+..++....+.|.++|+++||+|+.|+.+.++|.+..+..
T Consensus 889 ~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~ 968 (1321)
T 4f4c_A 889 GLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIP 968 (1321)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred eeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHH
Confidence 45678999999999999999988888877777666667777888888999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSL--VSFITSLVFMIEPIQGVGKAYNEFKQGEPAI 159 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (382)
.+...+......+...+.. +..+..++++++|++++..+..+.+.+ +.++.+......|+..+...+..+..+..+.
T Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~ 1048 (1321)
T 4f4c_A 969 HKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAG 1048 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555444333332 234455667788888888887665544 3333344444567788888899999999999
Q ss_pred HHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 160 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+|+.++++.+++........+.++..++|+|+||+|+||++ +.++|+|+||+|++||++|||||||||||||+++|+|+
T Consensus 1049 ~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1049 GIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp HHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred HHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 99999998766543333323334456789999999999865 34799999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc
Q 016798 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (382)
Q Consensus 239 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld 318 (382)
|+|++|+|.+||+|+++++.+++|++|++|||||+||+|||||||+||.+..+.++++++++++.+++++++.+||+|||
T Consensus 1129 ~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~Gld 1208 (1321)
T 4f4c_A 1129 YDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFE 1208 (1321)
T ss_dssp SCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTC
T ss_pred ccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCC
Confidence 99999999999999999999999999999999999999999999999954356899999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 319 t~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+|||+|.+|||||||||||||||++||+|||||||||+||++||+.|+++|++.+++||+|.
T Consensus 1209 T~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~ 1271 (1321)
T 4f4c_A 1209 TRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIV 1271 (1321)
T ss_dssp SEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEE
T ss_pred CEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999984
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-72 Score=579.37 Aligned_cols=376 Identities=34% Similarity=0.513 Sum_probs=334.9
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.++.+.++|.+..++.
T Consensus 158 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 237 (582)
T 3b60_A 158 IMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKM 237 (582)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 45778999999999999999999888999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+...+......+. .+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++.+..+++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~r 317 (582)
T 3b60_A 238 RLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666555544444332 3345567778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++..+. ..+.+...+.|+++||+|+|+++++++|+|+||+|++||++||+||||||||||+++|+|+++|
T Consensus 318 i~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p 395 (582)
T 3b60_A 318 LFAILDSEQEKDEG--KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI 395 (582)
T ss_dssp HHHHHHSCCSCCCC--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred HHHHHcCCCCccCC--CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC
Confidence 99999866543211 1111223467999999999975335799999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+.+++..++|++++||||+|.+|++|++||+.++.. .+.++++++++++.++++++++++|+|+||.+
T Consensus 396 ~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~ 474 (582)
T 3b60_A 396 DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART-EEYSREQIEEAARMAYAMDFINKMDNGLDTII 474 (582)
T ss_dssp SEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBC
T ss_pred CCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC-CCCCHHHHHHHHHHcCCHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999861 13578999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|.
T Consensus 475 ~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 534 (582)
T 3b60_A 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534 (582)
T ss_dssp CTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988899874
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-72 Score=584.84 Aligned_cols=375 Identities=31% Similarity=0.504 Sum_probs=336.1
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+++++++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||+|+.+.++|.+..++.
T Consensus 170 ~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 249 (598)
T 3qf4_B 170 IMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESL 249 (598)
T ss_dssp HHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+......+...+..+ ..+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..++.+..+++|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r 329 (598)
T 3qf4_B 250 RKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAER 329 (598)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666665555444444333 23445677788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.++++.+++... +...+.++..++|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+++|
T Consensus 330 i~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 330 IFEILDLEEEKDD-PDAVELREVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp HHHHTTSCCCCCC-SSCCCCCSCCCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred HHHHHcCCCCCCC-CCCCCCCCCCCeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 9999987655322 1112223345689999999999754 4699999999999999999999999999999999999999
Q ss_pred CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccccc
Q 016798 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (382)
Q Consensus 242 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~v 321 (382)
++|+|.+||.|+.+++.+++|++++||||+|++|++||+||+.++++ ..++++++++++.++++++++.+|+|+||.+
T Consensus 408 ~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 485 (598)
T 3qf4_B 408 DRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVL 485 (598)
T ss_dssp SEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST--TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBC
T ss_pred CCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC--CCCHHHHHHHHHHhCCHHHHHhccccccchh
Confidence 99999999999999999999999999999999999999999999875 3567889999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 322 ge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++|.+||||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|.
T Consensus 486 ~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~ 545 (598)
T 3qf4_B 486 TDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSII 545 (598)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999988999874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-68 Score=598.06 Aligned_cols=377 Identities=32% Similarity=0.449 Sum_probs=336.2
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++++||.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|.+..++.
T Consensus 201 ~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~ 280 (1284)
T 3g5u_A 201 IIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEA 280 (1284)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+......+...+.. +.....++++|+|++++..|.+++|.+++++.+......|+..+...+..++.+..+++|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 360 (1284)
T 3g5u_A 281 KRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYE 360 (1284)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666665554444433333 234456778889999999999999999988888888888999999999999999999999
Q ss_pred HHHhhcCcccccCC-CCCCCCCCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 162 LFDLTKFKSKVIEK-PDAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 162 i~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.++++.+++.... ......+...+.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 361 i~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 361 VFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp HHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred HHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 99999876543221 1112222345789999999999864 347999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||.|+.+++.+++|++|+||+|+|++|++||+|||.++.+ +.++++++++++.+++++++.++|+|+||
T Consensus 441 ~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 518 (1284)
T 3g5u_A 441 DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDT 518 (1284)
T ss_dssp CCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGC
T ss_pred CCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999875 46789999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+|++|.+||||||||||||||++++|+|||||||||+||+++++.+++.++++.+++|+|.
T Consensus 519 ~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~ 580 (1284)
T 3g5u_A 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIV 580 (1284)
T ss_dssp CCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred cccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999989999874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-65 Score=568.48 Aligned_cols=379 Identities=27% Similarity=0.433 Sum_probs=332.8
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
++++.++|.+++++++++|+++++..+..+.+++...+..+..+.....+.|.++|+++||+|+.++.+.++|.+..+..
T Consensus 844 i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~ 923 (1284)
T 3g5u_A 844 IISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIP 923 (1284)
T ss_dssp HHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 35678899999999999999999888888888888888888899999999999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..........+.. ..++..++++++|++++..|.++.+.+++++.+......|+..+...+..+..+..+.+|
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 1003 (1284)
T 3g5u_A 924 YRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASH 1003 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555554444333333 334556778889999999999999999999988888888998888888888999999999
Q ss_pred HHHhhcCcccccCCC-CCCCCCCCCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 162 LFDLTKFKSKVIEKP-DAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 162 i~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.++++.+++..... .........+.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 1004 i~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1004 IIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp HHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred HHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 999988765432211 111222345789999999999864 246999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc
Q 016798 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (382)
Q Consensus 240 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt 319 (382)
+|++|+|.+||+|+++++.+++|++++||||||.+|++||+||+.++.+....++++++++++.++++++++++|+||||
T Consensus 1084 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt 1163 (1284)
T 3g5u_A 1084 DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNT 1163 (1284)
T ss_dssp CCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGC
T ss_pred CCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999999999998765557899999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 320 ~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|.
T Consensus 1164 ~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~ 1225 (1284)
T 3g5u_A 1164 RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIV 1225 (1284)
T ss_dssp BCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEE
T ss_pred ccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999888999874
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-60 Score=450.74 Aligned_cols=231 Identities=38% Similarity=0.647 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCc
Q 016798 148 AYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGG 227 (382)
Q Consensus 148 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsG 227 (382)
....++.+..+++|++++++.+++........+.+...+.|+++||+|+|+++ .++|+||||+|++||++|||||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCch
Confidence 45667788899999999987655432222222222335689999999999754 46999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChH
Q 016798 228 KSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307 (382)
Q Consensus 228 KSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~ 307 (382)
||||+++|+|+|+|++|+|.+||.++.+++..++|++|+||+|+|++|++||+|||.++.+ ..++++++++++.+++.
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~--~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST--TCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc--cCCHHHHHHHHHHhCcH
Confidence 9999999999999999999999999999999999999999999999999999999999875 35688999999999999
Q ss_pred HHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 308 ~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+++..+|+||+|.+|++|.+||||||||++|||||+++|+|||||||||+||+.++..|++.|+++.+++|+|+
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~ 244 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIV 244 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999874
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-52 Score=387.32 Aligned_cols=194 Identities=44% Similarity=0.712 Sum_probs=180.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
.+|+++||+|+|+++..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 47999999999953234699999999999999999999999999999999999999999999999999988888888899
Q ss_pred EEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+||+|+|.+|+.|++||+.++.+ ..+++++.++++.+++.++++.+|+|+++.+++.+.+||||||||++|||||+++
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCT--TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCccccccHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998753 3467788899999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|++||||||||+||+.+++.+.+.|+++.+++|+|+
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tvii 199 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVII 199 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999999877888874
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-51 Score=381.06 Aligned_cols=192 Identities=40% Similarity=0.644 Sum_probs=177.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||+|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++++|
T Consensus 2 l~~~~l~~~y~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCC-CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 789999999953 2469999999999999999999999999999999999999999999999999988777778889999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
|||+|.+|+.|++||+.++.. ...+++++.++++.+++.++++++|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 81 v~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLE-GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTT-SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EcCCCccccccHHHHHhhhcc-CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999998721 1346778899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||||||||+||+.+++.+.+.|+++.+++|+|+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~ 193 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLV 193 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999999999877888874
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-50 Score=377.50 Aligned_cols=193 Identities=39% Similarity=0.657 Sum_probs=178.7
Q ss_pred CcEEEEeEEEEeCCCC-CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 186 GDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~-~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
+.|+++||+|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 4699999999997532 4699999999999999999999999999999999999987 8999999999988888888999
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|+||+|+|.+|+.|++||+.++.. ..+++++.++++.+++.+++..+|+|++|.+++.+.+||||||||++|||||++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 172 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK 172 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcccccCHHHHHhccCC--CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc
Confidence 999999999999999999998753 235678888999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+|++||||||||+||+.+++.+.+.|+++.+++|+|+
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tvii 209 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLII 209 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999999999999987888874
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-50 Score=377.26 Aligned_cols=194 Identities=39% Similarity=0.595 Sum_probs=177.0
Q ss_pred CcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 186 GDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
+.|+++||+|+|+++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 469999999999752 2469999999999999999999999999999999999999999999999999988887788889
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCH-HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDM-ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
|+||+|+|.+|+.|++||+.++... .+. +++.++++..++.++++.+|+|+++.+++.+.+||||||||++|||||+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTR--TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSS--CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred EEEEecCCccccccHHHHHhhhccc--CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987532 223 5677788888999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
++|++||||||||+||+.++..+.+.|+++.+ ++|+|+
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tvii 212 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEE
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 99999999999999999999999999999864 778874
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-49 Score=386.51 Aligned_cols=193 Identities=25% Similarity=0.460 Sum_probs=180.7
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
.+.|+++||+|+|++++.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.+++...+|+.
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 45799999999997545679999999999999999999999999999999999998 89999999999999999999999
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|+||+|++.+|+.|++||+.+.. ...++++.++++.+++.+++++.|.+++|.++++|.+||||||||+||||||++
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~---~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNA---AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTC---CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEcCCcccCccCHHHHhhhcc---ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998543 245788999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+|++||||||||+||+.++..+.+.|+++.+++|+|.
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~ 209 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVIL 209 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEE
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999998877788774
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=352.65 Aligned_cols=180 Identities=27% Similarity=0.418 Sum_probs=162.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
+.|+++||+|+|++++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 36999999999974445799999999999999999999999999999999999999999999998 49
Q ss_pred EEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+|++|+|.+|+.|++||+.++.. .......++++.+++.++++.+|.++++.+++.+.+||||||||++|||||+++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS---YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC---CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEecCCcccCCCHHHHhhccCC---cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998753 234556677888899999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHH-HHHHhCCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQA-VDRLLGHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~TvI~ 381 (382)
|+++|||||||+||+.+++.+.+. ++++.+++|+|+
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~ 185 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 185 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEE
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 999999999999999999999987 455556778774
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-47 Score=352.41 Aligned_cols=179 Identities=28% Similarity=0.436 Sum_probs=160.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++||+|+|++.+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 3899999999974335799999999999999999999999999999999999999999999998 499
Q ss_pred EecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 267 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
||+|+|.+|+.|++||+.++... ..+...++++.+++.+.+..+|.|++|.+++.+.+||||||||++|||||+++|
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQL---EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCC---CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEcCCCcCCCcCHHHHhhCcccc---CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999987532 234556777888888889999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHH---HHhCCCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVD---RLLGHHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~---~~~~~~TvI~ 381 (382)
+++|||||||+||+.++..+.+.|. ++.+++|+|+
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tvii 184 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL 184 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEE
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 9999999999999999999999984 4445778874
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-47 Score=350.83 Aligned_cols=184 Identities=33% Similarity=0.466 Sum_probs=151.7
Q ss_pred EEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH----
Q 016798 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL---- 261 (382)
Q Consensus 188 i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~---- 261 (382)
|+++||+|+|+++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997532 358999999999999999999999999999999999999999999999999999887654
Q ss_pred hcceEEecCCCccccc-cHHHHHcCCCCC---CCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 262 RRHVGLVSQDITLFSG-TVAENIGYRDLM---TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~---~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
|++|+||+|+|.+|+. |++||+.++... ...+. +++.++++.+++.+. .......+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh----------hhhCChhhCCHHHH
Confidence 3469999999999987 999999763110 01222 233444444444221 12445689999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||++|||||+.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~ 201 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV 201 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999999999999853 788874
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=354.86 Aligned_cols=183 Identities=30% Similarity=0.440 Sum_probs=153.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC--CCCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 264 (382)
-|+++||+|+|+++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 48999999999754 35999999999999999999999999999999999999999999999999984 2334567889
Q ss_pred eEEecCCC--ccccccHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 265 VGLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 265 i~~v~Q~~--~lf~~ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
||||+|+| .+|..|++||+.++......+. +++.++++.+++.+ .......+||||||||++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVAI 154 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCCcccCCHHHHHHHHH
Confidence 99999998 4788899999987532222233 33455565555543 3334557999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-C-CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~TvI~ 381 (382)
||||+.+|++||||||||+||+.++..+.+.|+++. + ++|+|+
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~ 199 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII 199 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEE
Confidence 999999999999999999999999999999999885 3 788874
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-46 Score=363.15 Aligned_cols=185 Identities=32% Similarity=0.434 Sum_probs=156.8
Q ss_pred CcEEEEeEEEEeCCCC--CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---
Q 016798 186 GDVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS--- 260 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~--~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~--- 260 (382)
.-|+++||+++|+.+. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999997532 35899999999999999999999999999999999999999999999999999888765
Q ss_pred HhcceEEecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
+|++||||+|++.+|+. ||+||+.++......+. +++.++++.+++.++.+ ....+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-----------CCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHH
Confidence 47889999999999876 99999987532112232 34556666666654433 3457999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~ 219 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999853 778774
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=342.13 Aligned_cols=186 Identities=24% Similarity=0.372 Sum_probs=153.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH-hcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 265 (382)
-|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ |+.+
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 4899999999975 369999999999999999999999999999999999999999999999999988776655 4569
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+||+|++.+|+. |++||+.++... ..+.++..+.+ .+.++.++ |++........+||||||||++|||||+.
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~-~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYN-RKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTT-CCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEecCCccCCCCcHHHHHHHhhhc-CCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999987 999999886311 11111222111 22334333 34455566778999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+|++||||||||+||+.+++.+.+.|+++. +++|+|+
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~ 194 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILL 194 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999986 5788874
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=339.00 Aligned_cols=182 Identities=31% Similarity=0.353 Sum_probs=151.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---Hh-
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR- 262 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r- 262 (382)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 3899999999965 46999999999999999999999999999999999999999999999999998776543 34
Q ss_pred cceEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
++++||+|++.+|+. |++||+.++......+ .+++.++++.+++. ........+||||||||++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-----------DKLSRKPYELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-----------TCTTCCGGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHHHH
Confidence 679999999999865 9999998642111112 23344455554443 3334456799999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~ 195 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVM 195 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999999999985 4678774
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=345.72 Aligned_cols=182 Identities=34% Similarity=0.431 Sum_probs=152.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC--CCCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 264 (382)
-|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4999999999964 36999999999999999999999999999999999999999999999999985 3345567888
Q ss_pred eEEecCCCccccc-cHHHHHcCCC-CCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRD-LMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~-~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
|+||+|++.+|+. |++||+.++. .....+ .+++.++++.+++.++ ......+||||||||++|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDK-----------AHAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-----------hcCChhhCCHHHHHHHHH
Confidence 9999999999876 9999998742 111122 2344555555555433 344557999999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~ 214 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 214 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999985 4678774
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=343.31 Aligned_cols=182 Identities=27% Similarity=0.365 Sum_probs=153.9
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++
T Consensus 14 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence 56999999999964 469999999999999999999999999999999999999999999999999876 456678899
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+||+|++.+|+. |++||+.++......+. +++.++++.+++.++. .....+||||||||++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-----------KDRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-----------GSBGGGCCHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999877 99999986421111122 3455566666554433 3345799999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiii 201 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 201 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999986 4678774
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=342.11 Aligned_cols=182 Identities=21% Similarity=0.252 Sum_probs=152.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH-HHhcce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i 265 (382)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+.. .+|+++
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999876643 456789
Q ss_pred EEecCCCcccc-ccHHHHHcCCCCC--CC-----------CC-H---HHHHHHHHHcChHHHHHhCCCCcccccCCCCCC
Q 016798 266 GLVSQDITLFS-GTVAENIGYRDLM--TK-----------ID-M---ERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (382)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eNi~~~~~~--~~-----------~~-~---~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~ 327 (382)
+||+|++.+|+ .|++||+.++... .. .+ . +++.++++.+ |++........+
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~ 153 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL-----------KLSHLYDRKAGE 153 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT-----------TCGGGTTSBGGG
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHc-----------CCchhhCCCchh
Confidence 99999999986 4999999875321 11 11 1 2233333333 455555666789
Q ss_pred CChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 328 lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 208 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI 208 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999999999999999999999854 678774
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-45 Score=344.02 Aligned_cols=182 Identities=27% Similarity=0.362 Sum_probs=156.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 5899999999975 46999999999999999999999999999999999999999999999999999999988899999
Q ss_pred EecCCCcc-ccccHHHHHcCCCCCC--CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 267 LVSQDITL-FSGTVAENIGYRDLMT--KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 267 ~v~Q~~~l-f~~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
|++|++.+ |+.|++||+.++.... ....+++.++++.+++.++. .....+||||||||++|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA-----------QRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTT-----------TSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHh-----------cCCcccCCHHHHHHHHHHHHHh
Confidence 99999987 5679999998764211 12245666777776654332 2344689999999999999999
Q ss_pred C------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 344 Q------NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 344 ~------~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
. +|++||||||||+||+.++..+.+.|+++.+ ++|+|+
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~ 203 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCC 203 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEE
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 9 9999999999999999999999999999853 357763
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-45 Score=341.45 Aligned_cols=180 Identities=27% Similarity=0.421 Sum_probs=155.0
Q ss_pred EEEEeEEEEeCCCC---CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~---~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
|+++||+|+|+.+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 78999999997222 3699999999999999999999999999999999999999999999999998642 67888
Q ss_pred eEEecCCC--ccccccHHHHHcCCCCC---CCCCHHHHHHHHHHcChH--HHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 265 VGLVSQDI--TLFSGTVAENIGYRDLM---TKIDMERVEHTARTANAD--EFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 265 i~~v~Q~~--~lf~~ti~eNi~~~~~~---~~~~~~~~~~~~~~~~l~--~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
++||+|+| .++..|++||+.++... .....+++.++++.+++. ++.++.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999997 46778999999876321 112356778888888887 6655544 689999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|||||+.+|++||||||||+||+.++..+.+.|+++. +++|+|+
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~ 193 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL 193 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999999999999999999985 4778774
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-45 Score=341.63 Aligned_cols=182 Identities=32% Similarity=0.411 Sum_probs=153.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC----------C
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----------I 256 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~----------~ 256 (382)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4899999999964 369999999999999999999999999999999999999999999999999861 3
Q ss_pred CH---HHHhcceEEecCCCccccc-cHHHHHcCCC-CCCCCC----HHHHHHHHHHcChHHH-HHhCCCCcccccCCCCC
Q 016798 257 RL---DSLRRHVGLVSQDITLFSG-TVAENIGYRD-LMTKID----MERVEHTARTANADEF-VRTLPQGYNTHIGPRGS 326 (382)
Q Consensus 257 ~~---~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~-~~~~~~----~~~~~~~~~~~~l~~~-i~~lp~Gldt~vge~G~ 326 (382)
+. ..+|++++||+|++.+|+. |++||+.++. .....+ .+++.++++.+++.++ .++ ...
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~ 152 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK-----------YPV 152 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS-----------CGG
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcC-----------Ccc
Confidence 43 3457789999999999876 9999998742 111122 2355667777777665 433 347
Q ss_pred CCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 327 ~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~ 208 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVV 208 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 8999999999999999999999999999999999999999999998853 678774
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-45 Score=331.78 Aligned_cols=176 Identities=21% Similarity=0.353 Sum_probs=150.5
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.+
T Consensus 9 ~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred ceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 46999999999964 5999999999999999999999999999999999999999999999999885 357889
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCC--CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMT--KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+||+|+|.+|+. |++||+.++.... ..+.+++.++++..+ ++.. .....+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVE-----------VLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTT-----------CCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcC-----------CCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999976 9999998742100 122455566655554 4444 556789999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+.+|+++||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiii 188 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 188 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEE
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999886 3677764
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=351.71 Aligned_cols=182 Identities=30% Similarity=0.398 Sum_probs=152.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC--CCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 264 (382)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ .+....+++
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 4899999999964 469999999999999999999999999999999999999999999999999832 122345678
Q ss_pred eEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
||||+|++.+|+. |++||+.|+......+ .+++.++++.+++.++.++ ...+||||||||++||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-----------~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGR-----------YPHELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTS-----------CGGGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999999999965 9999999875322222 2455666776666554443 4479999999999999
Q ss_pred HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 340 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
|||+.+|++||||||||+||+.+...+.+.++++. .+.|+|+
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~ 194 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVF 194 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999998777653 3678764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-45 Score=343.79 Aligned_cols=180 Identities=24% Similarity=0.310 Sum_probs=150.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC--CCCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 264 (382)
-|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 21 ~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 21 LIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred eEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 5999999999964 36999999999999999999999999999999999999999999999999987 6777788899
Q ss_pred eEEecCCCcc-ccc--cHHHHHcCCCCC-----CCCCH---HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 265 VGLVSQDITL-FSG--TVAENIGYRDLM-----TKIDM---ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 265 i~~v~Q~~~l-f~~--ti~eNi~~~~~~-----~~~~~---~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
|+||+|++.+ |.. |++||+.++... ....+ +++.++++.+++. ........+||||||
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGqk 167 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-----------AKAQQYIGYLSTGEK 167 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-----------GGTTSBGGGSCHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHH
Confidence 9999999875 544 999999886311 00122 2344555555443 334455679999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCce
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTV 379 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~Tv 379 (382)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+
T Consensus 168 qRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv 214 (279)
T 2ihy_A 168 QRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTL 214 (279)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEE
Confidence 999999999999999999999999999999999999998854 6787
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=353.96 Aligned_cols=180 Identities=32% Similarity=0.498 Sum_probs=154.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.||
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 4899999999974 3699999999999999999999999999999999999999999999999999887765 46799
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+. ||+||+.|+......+. +++.++++.+++.++.+ ....+||||||||++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------CCGGGSCHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhHCCHHHHHHHHHHHH
Confidence 99999999976 99999988632222333 34556666666654443 3457999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~ 189 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999853 678764
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=350.01 Aligned_cols=182 Identities=30% Similarity=0.471 Sum_probs=154.2
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++|
T Consensus 13 ~~l~~~~l~~~y~g~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 89 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNV 89 (355)
T ss_dssp EEEEEEEEEECCTTS-TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSE
T ss_pred ceEEEEEEEEEEcCC-CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcE
Confidence 469999999999422 469999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+||+|++.+|+. |++||+.|+......+ ++++.++++.+++.++.++. ..+||||||||++|||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~-----------~~~LSGGq~QRvalAr 158 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRF-----------PHELSGGQQQRVALAR 158 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCC-----------cccCCHHHHHHHHHHH
Confidence 999999999976 9999998753211122 24566677777665554443 4799999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 201 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999998853 678764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=342.09 Aligned_cols=176 Identities=27% Similarity=0.436 Sum_probs=144.0
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
.+.|+++||+|.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp ------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred CceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 3469999999863 3599999999999999999999999999999999999999999999987 4
Q ss_pred eEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 265 i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
++|++|++.+|++|++||+. +.. .....+.++++..++.+++..+|.++++.+++.+.+||||||||++|||||++
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~ 176 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GVS---YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 176 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TTC---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHS
T ss_pred EEEEeCCCccCcccHHHHhh-Ccc---cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999998 532 23455667788889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHH-HHHhCCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAV-DRLLGHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l-~~~~~~~TvI~ 381 (382)
+|+++|||||||+||+.++..+.+.+ +++.+++|+|+
T Consensus 177 ~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tvii 214 (290)
T 2bbs_A 177 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214 (290)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999874 45556778774
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=349.72 Aligned_cols=180 Identities=35% Similarity=0.514 Sum_probs=154.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 3899999999964 3699999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+. |++||+.|+......+ ++++.++++.+++.++.++. ..+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------~~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK-----------PTQLSGGQQQRVALARA 147 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999976 9999999864322222 24566777777766554444 47999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 189 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY 189 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999998753 677764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=333.74 Aligned_cols=176 Identities=26% Similarity=0.395 Sum_probs=147.6
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||+++|++ +|+|+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..|++|+|
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 678999999953 59999999999 999999999999999999999999999999999999987643 34778999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCC--CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKI--DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|+|++.+|+. |++||+.++...... +.+++.++++.+++.+ .......+||||||||++|||||+.
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-----------LLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-----------TTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHH-----------HhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999977 999999986432111 1234455555555433 3334457999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|+++||||||++||+.+++.+.+.|+++.+ ++|+|+
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~ 182 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999853 778874
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-44 Score=348.38 Aligned_cols=180 Identities=33% Similarity=0.524 Sum_probs=148.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|+
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 4999999999964 3699999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+. |++||+.|+......+. +++.++++.+++.++.++. ..+||||||||++||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRY-----------PAQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSC-----------TTTCCSSCHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999975 99999998753222333 3456667776665554443 47999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 197 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 197 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999998754 677764
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=350.00 Aligned_cols=182 Identities=32% Similarity=0.462 Sum_probs=153.8
Q ss_pred cEEEEeEEEEeCCCCCC--ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC---HHHH
Q 016798 187 DVKFCNISFKYADNMPL--VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSL 261 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~--~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~ 261 (382)
.|+++||+++|++ .. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ....
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 3899999999964 46 999999999999999999999999999999999999999999999999986521 2235
Q ss_pred hcceEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+++|+||+|++.+|+. |++||+.|+......+ .+++.++++.+++.++.++. ..+||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-----------~~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-----------PRELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHH
Confidence 7789999999999976 9999999864322223 23456677777665554443 479999999999
Q ss_pred HHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 337 alaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|||||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 196 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999998853 678774
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-44 Score=331.65 Aligned_cols=176 Identities=24% Similarity=0.309 Sum_probs=154.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+|+ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++.+.+...+|++++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 3889999985 4899999999999999999999999999999999999999 99999999998888888889999
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
|++|++.+|.. |++||+.++... ..+++++.++++.+++.++. .....+||||||||++|||||+.+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHD-KTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSS-TTCHHHHHHHHHHTTCGGGT-----------TSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCccCCCCcHHHHHHHhhcc-CCcHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999998865 999999987421 12366777777777765443 345679999999999999999999
Q ss_pred CC-------EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 346 SS-------VLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 346 ~~-------ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|+ +|||||||++||+.+++.+.+.|+++. +++|+|+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvii 188 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVM 188 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99 999999999999999999999999985 4778774
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-44 Score=349.37 Aligned_cols=180 Identities=39% Similarity=0.555 Sum_probs=152.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 3899999999964 3699999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||+|++.+|+. |++||+.|+......+. +++.++++.+++.++.++ ...+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNR-----------YPWQLSGGQQQRVAIARA 147 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-----------CGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999976 99999987532111222 345566666665544333 447999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 189 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999998854 678764
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=348.41 Aligned_cols=178 Identities=34% Similarity=0.526 Sum_probs=152.8
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||+++|++ . +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++|+|
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 689999999964 4 9999999999999999999999999999999999999999999999999987554 4678999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCC-CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
|+|++.+|+. |++||+.|+..... ..++++.++++.+++.++.++ ...+||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----------NPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-----------CGGGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999976 99999987531100 122667777777776555444 3479999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~ 183 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999853 678764
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=334.69 Aligned_cols=181 Identities=25% Similarity=0.345 Sum_probs=143.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC--CCCCCceEEEcCEeCCCCCHHHH-hcc
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSL-RRH 264 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~~ 264 (382)
|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |..
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 4 LEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred EEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 889999999964 4699999999999999999999999999999999999 88999999999999988776655 456
Q ss_pred eEEecCCCccccc-cHHHHHcCCCC---CCCCC----HHHHHHHHHHcCh-HHHHHhCCCCcccccCCCCCC-CChHHHH
Q 016798 265 VGLVSQDITLFSG-TVAENIGYRDL---MTKID----MERVEHTARTANA-DEFVRTLPQGYNTHIGPRGSS-LSGGQRQ 334 (382)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eNi~~~~~---~~~~~----~~~~~~~~~~~~l-~~~i~~lp~Gldt~vge~G~~-lSgGq~Q 334 (382)
++|++|+|.+|+. |++||+.++.. ....+ .+++.++++.+++ .++. .....+ |||||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~~~LSgGqkQ 150 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL-----------SRYLNEGFSGGEKK 150 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG-----------GSBTTCC----HHH
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh-----------cCCcccCCCHHHHH
Confidence 9999999999976 99999976421 00011 1234444444444 1222 222345 9999999
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++|||||+++|++||||||||+||+.+++.+.+.|+++.+ ++|+|+
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 198 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALV 198 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999854 678764
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=347.39 Aligned_cols=180 Identities=28% Similarity=0.479 Sum_probs=151.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC------CCHHH
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN------IRLDS 260 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~------~~~~~ 260 (382)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ .+.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 3889999999964 369999999999999999999999999999999999999999999999999865 443
Q ss_pred HhcceEEecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
.+++|+||+|++.+|+. |++||+.|+......+. +++.++++.+++.++.++ ...+||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------CcccCCHHHHHH
Confidence 36789999999999965 99999987532111222 345666666666554443 347999999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
++|||||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 195 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY 195 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999998753 677764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=327.54 Aligned_cols=170 Identities=30% Similarity=0.390 Sum_probs=142.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++||+++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++++++
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 38999999999722 4699999999999999999999999999999999999999999998 356899
Q ss_pred EecCCCccc-cccHHHHHcCCCCC--------CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 267 LVSQDITLF-SGTVAENIGYRDLM--------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 267 ~v~Q~~~lf-~~ti~eNi~~~~~~--------~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
||+|++.+| ..|++||+.++... .....+++.++++.+++.++ ......+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHL-----------AKREFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHH-----------hcCChhhCCHHHHHHHH
Confidence 999999988 56999999886311 00112345566666665443 33446799999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~ 184 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVF 184 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999864 678774
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=329.63 Aligned_cols=176 Identities=20% Similarity=0.312 Sum_probs=148.0
Q ss_pred EEEEeEEEEeCCC--CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 188 VKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 188 i~~~~v~f~y~~~--~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
|+++|++++|+++ ..++|+|+||+|+ ||+++|+||||||||||+++|+|++ |++|+|.++|.++.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 1369999999999 9999999999999999999999999 9999999999998654 33 7789
Q ss_pred E-EecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 G-LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~-~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+ |++|+|.+ ..|++||+.++......+++++.++++..++.+ ........+||||||||++|||||+.
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LSgGqkqRv~lAraL~~ 145 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE----------EILRRKLYKLSAGQSVLVRTSLALAS 145 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCG----------GGGGSBGGGSCHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCCh----------hHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 9 99999999 889999998753211234566666666654430 44455678999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+|++|||||||++||+.+++.+.+.|+++.+ |+|+
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tvii 180 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGIL 180 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEE
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEE
Confidence 9999999999999999999999999998854 7764
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-43 Score=329.13 Aligned_cols=186 Identities=21% Similarity=0.257 Sum_probs=146.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC--CCCCCceEEEcCEeCCCCCHHHH-hc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSL-RR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 263 (382)
-|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... +.
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 5999999999964 4699999999999999999999999999999999999 57899999999999987776655 44
Q ss_pred ceEEecCCCccccc-cHHHHHcCCC-------CCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccC-CCCC-CCChHHH
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRD-------LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG-PRGS-SLSGGQR 333 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~-------~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vg-e~G~-~lSgGq~ 333 (382)
.++||+|+|.+|+. |++||+.+.. .....+.++..+ .+.+.++.+ |+++.+. .... +||||||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHHH
Confidence 69999999999876 9999986531 000112222111 122233332 4433222 2233 5999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||++|||||+.+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tvii 219 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFII 219 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEE
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999999999999998854 678764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=292.64 Aligned_cols=169 Identities=24% Similarity=0.342 Sum_probs=138.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+++ ..++
T Consensus 269 ~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~ 333 (538)
T 3ozx_A 269 KMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILS 333 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEE
T ss_pred eEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeE
Confidence 5889999999964 368888999999999999999999999999999999999999998764 3589
Q ss_pred EecCCCcc-ccccHHHHHcCCCCCC-CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 267 LVSQDITL-FSGTVAENIGYRDLMT-KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 267 ~v~Q~~~l-f~~ti~eNi~~~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|+||++.. |..|++||+.+..... ....+.+.++++..++.+ .......+||||||||++|||||+.
T Consensus 334 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRv~iAraL~~ 402 (538)
T 3ozx_A 334 YKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHR-----------LLESNVNDLSGGELQKLYIAATLAK 402 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGG-----------CTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred eechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHH-----------HhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999874 5779999997532111 112234445555555433 3344567999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+|++|||||||++||+.+...+.+.|+++. .+.|+|+
T Consensus 403 ~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~ 441 (538)
T 3ozx_A 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFI 441 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999985 3677763
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=297.61 Aligned_cols=167 Identities=26% Similarity=0.345 Sum_probs=136.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.+++
T Consensus 357 ~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~ 420 (607)
T 3bk7_A 357 LVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVA 420 (607)
T ss_dssp EEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEE
T ss_pred EEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEE
Confidence 5899999999964 3689999999999999999999999999999999999999999975 24699
Q ss_pred EecCCCcc-ccccHHHHHcCC-CCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 267 LVSQDITL-FSGTVAENIGYR-DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 267 ~v~Q~~~l-f~~ti~eNi~~~-~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|+||++.. ++.|+.||+... ... ....+.+.++++..++ +........+||||||||++|||||+.
T Consensus 421 ~v~Q~~~~~~~~tv~e~~~~~~~~~-~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 421 YKPQYIKAEYEGTVYELLSKIDSSK-LNSNFYKTELLKPLGI-----------IDLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHH-HHCHHHHHHTHHHHTC-----------TTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEecCccCCCCCcHHHHHHhhhccC-CCHHHHHHHHHHHcCC-----------chHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 99999976 567999998643 110 0012334444444443 223334457999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+|++|||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~ 527 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999974 4778774
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=295.33 Aligned_cols=167 Identities=26% Similarity=0.339 Sum_probs=135.5
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.++++|+++.|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..++
T Consensus 287 ~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~ 350 (538)
T 1yqt_A 287 LVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVA 350 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEE
T ss_pred EEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEE
Confidence 5899999999964 3689999999999999999999999999999999999999999985 23699
Q ss_pred EecCCCcc-ccccHHHHHcCC-CCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 267 LVSQDITL-FSGTVAENIGYR-DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 267 ~v~Q~~~l-f~~ti~eNi~~~-~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
|+||++.. +..|+.||+... ... ....+.+.++++..+ +.........+||||||||++|||||+.
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDASK-LNSNFYKTELLKPLG-----------IIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHH-HTCHHHHHHTTTTTT-----------CGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEecCCcCCCCCcHHHHHHhhhccC-CCHHHHHHHHHHHcC-----------ChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 99999976 567999998642 100 011233333333333 3333445567999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+|++|||||||++||..+...+.+.|+++. .+.|+|+
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~ 457 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 457 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999875 3778774
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=298.10 Aligned_cols=177 Identities=26% Similarity=0.334 Sum_probs=138.3
Q ss_pred cEEE--------EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE---------EEc
Q 016798 187 DVKF--------CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI---------LVD 249 (382)
Q Consensus 187 ~i~~--------~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i---------~~~ 249 (382)
.|++ +||+++|++. ..+|+|+| +|++||++||+||||||||||+++|+|+++|++|++ .++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred eEEEecCCccccCCeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 4788 8999999753 24899999 999999999999999999999999999999999996 345
Q ss_pred CEeCCCCCHHH--HhcceEEecCCCc----cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCC
Q 016798 250 DHDVQNIRLDS--LRRHVGLVSQDIT----LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323 (382)
Q Consensus 250 g~~~~~~~~~~--~r~~i~~v~Q~~~----lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge 323 (382)
|.++.+..... .+..+++++|... ++.+|++||+.... ..+++.++++..++.+.. ..
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~-----~~~~~~~~L~~lgL~~~~-----------~~ 224 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD-----EVGKFEEVVKELELENVL-----------DR 224 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC-----CSSCHHHHHHHTTCTTGG-----------GS
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH-----HHHHHHHHHHHcCCCchh-----------CC
Confidence 65543221111 1345889988754 34569999996422 123455667666654332 23
Q ss_pred CCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
...+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+
T Consensus 225 ~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIi 283 (607)
T 3bk7_A 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 283 (607)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 3468999999999999999999999999999999999999999999998854 677764
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=302.41 Aligned_cols=173 Identities=27% Similarity=0.393 Sum_probs=128.0
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
-|+++|++|+|+++..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 49999999999754457999999999999999999999999999999999999999999999862 1366
Q ss_pred EecCCCcc-----ccccHH-------------------------------------------------------------
Q 016798 267 LVSQDITL-----FSGTVA------------------------------------------------------------- 280 (382)
Q Consensus 267 ~v~Q~~~l-----f~~ti~------------------------------------------------------------- 280 (382)
|++|++.. ++.|++
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 66665421 112333
Q ss_pred -----HHHcCCCC---------------------------------------CCCCCHHHHHHHHHHcChHHHHHhCCCC
Q 016798 281 -----ENIGYRDL---------------------------------------MTKIDMERVEHTARTANADEFVRTLPQG 316 (382)
Q Consensus 281 -----eNi~~~~~---------------------------------------~~~~~~~~~~~~~~~~~l~~~i~~lp~G 316 (382)
||+.++.. ......+++.+.++..++.+..
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~------ 893 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI------ 893 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH------
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchh------
Confidence 33332210 0001123344444444442211
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 317 ldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
.......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+
T Consensus 894 ---~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIi 953 (986)
T 2iw3_A 894 ---VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVII 953 (986)
T ss_dssp ---HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEE
T ss_pred ---hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEE
Confidence 012345799999999999999999999999999999999999999999999876 457764
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-37 Score=291.67 Aligned_cols=196 Identities=16% Similarity=0.213 Sum_probs=161.1
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCCCCCCCcEEEEeEEEEeC
Q 016798 119 SGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYA 198 (382)
Q Consensus 119 ~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~ 198 (382)
..+..+-+.+.+|+.+... ..|+..++..+..++.+..+..|+.++++.+++...... ..+...+.|+++||+|+|+
T Consensus 36 a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~i~~~~vs~~y~ 112 (305)
T 2v9p_A 36 ALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEG--SWKSILTFFNYQNIELITF 112 (305)
T ss_dssp HHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSC--CTHHHHHHHHHTTCCHHHH
T ss_pred HHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--cccccCCeEEEEEEEEEcC
Confidence 3445566778888877666 479999999999999999999999999876544221111 1111123589999999997
Q ss_pred CCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCcccccc
Q 016798 199 DNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGT 278 (382)
Q Consensus 199 ~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~t 278 (382)
.++|+|+||+|++|++++|+||||||||||+++|+|++ +|+| +++++|++++|.+|
T Consensus 113 ---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~t 168 (305)
T 2v9p_A 113 ---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLAS 168 (305)
T ss_dssp ---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGG
T ss_pred ---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccccc
Confidence 36999999999999999999999999999999999999 8998 45789999999999
Q ss_pred HHH-HHcCCCCCCCCCHHHHHHHHHHcChHHHHHh-CCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCC
Q 016798 279 VAE-NIGYRDLMTKIDMERVEHTARTANADEFVRT-LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356 (382)
Q Consensus 279 i~e-Ni~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts 356 (382)
++| |+.++. +.++ +++++++. +|+|+| |.+|||||||| |||++++|+||| ||
T Consensus 169 i~~~ni~~~~---~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts 222 (305)
T 2v9p_A 169 LADTRAALVD---DATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TS 222 (305)
T ss_dssp GTTCSCEEEE---EECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EE
T ss_pred HHHHhhccCc---cccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----EC
Confidence 998 998863 2232 34567777 899998 78999999999 999999999999 99
Q ss_pred CCCHHHHHHHH
Q 016798 357 ALDSRSELLVR 367 (382)
Q Consensus 357 ~LD~~~~~~i~ 367 (382)
+||+.++..+.
T Consensus 223 ~LD~~~~~~i~ 233 (305)
T 2v9p_A 223 NIDVQAEDRYL 233 (305)
T ss_dssp SSCSTTCGGGG
T ss_pred CCCHHHHHHHH
Confidence 99999998776
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=292.20 Aligned_cols=173 Identities=28% Similarity=0.358 Sum_probs=133.5
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE---------EEcCEeCCCCCHHH-
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI---------LVDDHDVQNIRLDS- 260 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i---------~~~g~~~~~~~~~~- 260 (382)
+||+++|++. ..+|+|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++.......
T Consensus 25 ~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 25 EDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp CCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred cCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 5899999753 25899999 999999999999999999999999999999999996 34565443211111
Q ss_pred -HhcceEEecCCCccc----cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 016798 261 -LRRHVGLVSQDITLF----SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (382)
Q Consensus 261 -~r~~i~~v~Q~~~lf----~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qr 335 (382)
.+..+++++|+...+ .+|++||+.... ..+++.++++..++.+. ......+||||||||
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-----~~~~~~~~l~~lgl~~~-----------~~~~~~~LSgGekQR 166 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-----ETGKLEEVVKALELENV-----------LEREIQHLSGGELQR 166 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC-----SSSCHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHH
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhhhh-----HHHHHHHHHHHcCCChh-----------hhCChhhCCHHHHHH
Confidence 124588999976543 358999985321 12345566666665322 233457899999999
Q ss_pred HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 336 ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+
T Consensus 167 v~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~ 213 (538)
T 1yqt_A 167 VAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV 213 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999999999999999998754 677764
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-32 Score=280.86 Aligned_cols=166 Identities=25% Similarity=0.367 Sum_probs=132.6
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCC-----CEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAG-----ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G-----~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
++++|+|++. ..+++|+||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 5678899753 34799999999999 8899999999999999999999999999972 11 3469
Q ss_pred EEecCCCc-cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDIT-LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~-lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+|++|++. .|+.|++||+.........+.+...++++..++.+ .......+||||||||++|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD-----------IIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT-----------TSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHh
Confidence 99999976 46789999985322111123445555666655433 2334457999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+|++|||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvii 523 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999874 3778774
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=276.33 Aligned_cols=164 Identities=26% Similarity=0.381 Sum_probs=133.8
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..+...|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+... +..+
T Consensus 434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 46888899999974 369999999999999999999999999999999996 554 4544321 1247
Q ss_pred EEecCCC-ccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcCh-HHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 266 GLVSQDI-TLF-SGTVAENIGYRDLMTKIDMERVEHTARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 266 ~~v~Q~~-~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l-~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+|++|++ .++ ..|++||+.+.. ... .+++.++++..++ .+..++. ..+||||||||++|||||
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~--~~~-~~~v~~~L~~lgL~~~~~~~~-----------~~~LSGGqkQRvaLArAL 563 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESG--VGT-KEAIKDKLIEFGFTDEMIAMP-----------ISALSGGWKMKLALARAV 563 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTC--SSC-HHHHHHHHHHTTCCHHHHHSB-----------GGGCCHHHHHHHHHHHHH
T ss_pred EEEcccccccccCCcHHHHHHHhh--cCH-HHHHHHHHHHcCCChhhhcCC-----------cccCCHHHHHHHHHHHHH
Confidence 8999986 444 459999997621 122 6778888888888 4555443 368999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+.+|++|||||||++||+.+...+.+.|++ .++|+|+
T Consensus 564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIi 600 (986)
T 2iw3_A 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSIT 600 (986)
T ss_dssp HTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEE
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEE
Confidence 999999999999999999999999999988 5778774
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-32 Score=278.55 Aligned_cols=171 Identities=23% Similarity=0.312 Sum_probs=131.6
Q ss_pred eEEEEeCCCCCCccceeeEEee-CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE-----------EEcCEeCCCCCHH
Q 016798 192 NISFKYADNMPLVLDQLNLHIR-AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-----------LVDDHDVQNIRLD 259 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i~-~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i-----------~~~g~~~~~~~~~ 259 (382)
+++++|+.+ .++-..|.++ +||++||+||||||||||+|+|+|+++|++|+| .++|.++..+...
T Consensus 4 ~~~~~~~~~---~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 4 EVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp CEEEESSTT---SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCceecCCC---ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 577899865 4566667666 899999999999999999999999999999998 5677665432111
Q ss_pred HH------hcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 260 SL------RRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 260 ~~------r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
.. ...+.+++|.+.++.+|+++++.... ..+.+.++++..++.+. ......+||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-----~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~ 144 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKID-----ERGKKDEVKELLNMTNL-----------WNKDANILSGGGL 144 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC-----CSSCHHHHHHHTTCGGG-----------TTSBGGGCCHHHH
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcch-----hHHHHHHHHHHcCCchh-----------hcCChhhCCHHHH
Confidence 11 22345566666677889999875321 12345566666665432 2234478999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||++|||||+.+|++||||||||+||+.+...+.+.|+++.+++|+|.
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~ 192 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999999987888874
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=274.66 Aligned_cols=174 Identities=27% Similarity=0.365 Sum_probs=125.5
Q ss_pred eEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE-----------EEcCEeCCCCCHHH
Q 016798 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-----------LVDDHDVQNIRLDS 260 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i-----------~~~g~~~~~~~~~~ 260 (382)
|++++|+.+. ..|++++ .+++||++||+||||||||||+|+|+|+++|++|+| .+.|.++..+....
T Consensus 82 ~~~~~Y~~~~-~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 82 HVTHRYSANS-FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TEEEECSTTS-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCCc-eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 4588997643 4677777 689999999999999999999999999999999998 23333332221222
Q ss_pred Hhcce--EEecCCCcc----ccc---cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 261 LRRHV--GLVSQDITL----FSG---TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 261 ~r~~i--~~v~Q~~~l----f~~---ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
+.+.+ .+.+|.... +.+ ++.+++.... ....+++.++++..++.+..+ ....+||||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG 225 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM---EKSPEDVKRYIKILQLENVLK-----------RDIEKLSGG 225 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC---CSCHHHHHHHHHHHTCTGGGG-----------SCTTTCCHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh---hhHHHHHHHHHHHcCCcchhC-----------CChHHCCHH
Confidence 22332 233333221 111 5666654322 124567777777776644433 344799999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+
T Consensus 226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 276 (608)
T 3j16_B 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC 276 (608)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999865 677763
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-30 Score=273.85 Aligned_cols=171 Identities=23% Similarity=0.360 Sum_probs=105.1
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHH---------------------HHHhhCCCCC-------CceEEEcCEeC
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLA---------------------KLLLRLYDPL-------SGCILVDDHDV 253 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~---------------------~ll~g~~~~~-------~G~i~~~g~~~ 253 (382)
..+|+||||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 8999999998 55666666554
Q ss_pred CCCCHHHHhcceEEecCCCccc--------------------cccHHHHHcCCCCCCCCC-HHH-----HHHHHHHcChH
Q 016798 254 QNIRLDSLRRHVGLVSQDITLF--------------------SGTVAENIGYRDLMTKID-MER-----VEHTARTANAD 307 (382)
Q Consensus 254 ~~~~~~~~r~~i~~v~Q~~~lf--------------------~~ti~eNi~~~~~~~~~~-~~~-----~~~~~~~~~l~ 307 (382)
.. ..++.+++|+|.+.++ ..|++||+.+........ +.+ ..++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 32 2245677777765432 358999997742110000 011 11111111
Q ss_pred HHHHhCCCCcccc-cCCCCCCCChHHHHHHHHHHHccCCCC--EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 308 EFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 308 ~~i~~lp~Gldt~-vge~G~~lSgGq~QrialaRall~~~~--ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+.++.+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. ++.|+|+
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~ 259 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 259 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 123332 33322 344567899999999999999999998 999999999999999999999999885 4678764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-29 Score=263.64 Aligned_cols=174 Identities=25% Similarity=0.355 Sum_probs=117.5
Q ss_pred EEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHh----------------------hCCCCCCceEEEcCE
Q 016798 194 SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL----------------------RLYDPLSGCILVDDH 251 (382)
Q Consensus 194 ~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~----------------------g~~~~~~G~i~~~g~ 251 (382)
.+.+.+....+|+||||+|++||++||+||||||||||+++|+ |+. +.+|.|.+++.
T Consensus 327 ~~~~~~~~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~ 405 (670)
T 3ux8_A 327 WLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQS 405 (670)
T ss_dssp EEEEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSS
T ss_pred ceeecCccccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccc
Confidence 3444333346899999999999999999999999999998754 233 33468888888
Q ss_pred eCCCCCHHHHhc-----------------------------------------ceEEecCCCccc---------------
Q 016798 252 DVQNIRLDSLRR-----------------------------------------HVGLVSQDITLF--------------- 275 (382)
Q Consensus 252 ~~~~~~~~~~r~-----------------------------------------~i~~v~Q~~~lf--------------- 275 (382)
++...+....+. ..+++.|+..++
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~ 485 (670)
T 3ux8_A 406 PIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRY 485 (670)
T ss_dssp CSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCB
T ss_pred cCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCccc
Confidence 876543211110 123333332222
Q ss_pred ------------------cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHHHH
Q 016798 276 ------------------SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 276 ------------------~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~Qri 336 (382)
..|++||+.+..... ..++..+.+..+ |+. ...+....+||||||||+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~~~~--~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgG~~qrv 552 (670)
T 3ux8_A 486 NRETLEVTYKGKNIAEVLDMTVEDALDFFASIP--KIKRKLETLYDV-----------GLGYMKLGQPATTLSGGEAQRV 552 (670)
T ss_dssp CHHHHTCCBTTBCHHHHHTSBHHHHHHHTTTCH--HHHHHHHHHHHT-----------TCTTSBTTCCGGGCCHHHHHHH
T ss_pred ChhhhheeecCCCHHHHhhCCHHHHHHHHHHhh--hHHHHHHHHHHc-----------CCchhhccCCchhCCHHHHHHH
Confidence 347888887653210 112222333322 232 234566789999999999
Q ss_pred HHHHHccCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 337 AIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 337 alaRall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+|||||+.+| ++|||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 553 ~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~ 601 (670)
T 3ux8_A 553 KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 601 (670)
T ss_dssp HHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999887 5999999999999999999999999986 4678774
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-28 Score=242.35 Aligned_cols=178 Identities=19% Similarity=0.249 Sum_probs=128.2
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC--------------------------------------CCCc
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--------------------------------------PLSG 244 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--------------------------------------~~~G 244 (382)
..++++||++++| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 999999999999999999977764 4478
Q ss_pred eEEEcCEeCCCCCHHHHhcc-eEEecCCCccccccHHHHHcCCCCCCCCCHH-------HHHHH----------------
Q 016798 245 CILVDDHDVQNIRLDSLRRH-VGLVSQDITLFSGTVAENIGYRDLMTKIDME-------RVEHT---------------- 300 (382)
Q Consensus 245 ~i~~~g~~~~~~~~~~~r~~-i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~-------~~~~~---------------- 300 (382)
++.+||.++...+..++.+. +++++|++.++-.+..++..+.+......+. ++.++
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 89999999976667777766 8999999998766655444332211000000 00000
Q ss_pred ---------------HHH-----------------cChHHHHHhC--C----------------CCccc---ccCCCCCC
Q 016798 301 ---------------ART-----------------ANADEFVRTL--P----------------QGYNT---HIGPRGSS 327 (382)
Q Consensus 301 ---------------~~~-----------------~~l~~~i~~l--p----------------~Gldt---~vge~G~~ 327 (382)
+.. ..+.+.+..+ | .|++. .+..++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 000 0011222222 1 12222 34444444
Q ss_pred --------CChHHHHHHHHHHHccCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 328 --------LSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 328 --------lSgGq~QrialaRall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||||||||++|||+++.+| ++|||||||++||+.+...+.+.|+++.+++|+|.
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~ 351 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLV 351 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 8999999999999999999 99999999999999999999999999987888873
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-32 Score=271.27 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=123.4
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc-e-EEEcCEeCCCCCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-C-ILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G-~-i~~~g~~~~~~~~~~~r~~ 264 (382)
-++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|++.|++| + |.+|| + .|+.
T Consensus 118 mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~ 180 (460)
T 2npi_A 118 MKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP 180 (460)
T ss_dssp HHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred hhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence 466667776663 79999999999999999999999999999999999999 9 99998 1 3778
Q ss_pred eEEecCCCcccc----ccHHHHHcCCCCC-CCC-CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 265 VGLVSQDITLFS----GTVAENIGYRDLM-TKI-DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 265 i~~v~Q~~~lf~----~ti~eNi~~~~~~-~~~-~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
++++||++.+|. .|++||+ ++... ... ..+.+..+++.+ |++.... ..+||||||||+++
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHH
Confidence 999999996543 4899999 65421 110 111122222222 4444432 67999999999999
Q ss_pred HHH--ccCCCCE----EEEeC-cCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 339 ARA--LYQNSSV----LILDE-ATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 339 aRa--ll~~~~i----lilDE-pts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
||| |+.+|++ +|||| ||++||+. ...+.+.++++ ++|+|
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tvi 292 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIM 292 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEE
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEE
Confidence 999 9999999 99999 99999999 67777777665 44544
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-29 Score=228.24 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=95.5
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 282 (382)
.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++.. +...++++++|+||++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-CchhhhcceEEecCCH-------HHH
Confidence 588985 89999999999999999999999999 999999953 33321 2234577899999998 566
Q ss_pred H-cCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHH
Q 016798 283 I-GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (382)
Q Consensus 283 i-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~ 361 (382)
+ .++.+. .+.+........+.++++. |+ |||||++|||||+.+|++|||||||++
T Consensus 79 l~~~~~~~----~~~~~~~~~~~~~~~~l~~---gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~---- 134 (208)
T 3b85_A 79 IDPYLRPL----HDALRDMVEPEVIPKLMEA---GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT---- 134 (208)
T ss_dssp -CTTTHHH----HHHHTTTSCTTHHHHHHHT---TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----
T ss_pred HHHHHHHH----HHHHHHhccHHHHHHHHHh---CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----
Confidence 6 332100 0000000000112223322 22 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcee
Q 016798 362 SELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 362 ~~~~i~~~l~~~~~~~TvI 380 (382)
+...+.+.|+++.+++|+|
T Consensus 135 ~~~~l~~~l~~l~~g~tii 153 (208)
T 3b85_A 135 TPAQMKMFLTRLGFGSKMV 153 (208)
T ss_dssp CHHHHHHHHTTBCTTCEEE
T ss_pred cHHHHHHHHHHhcCCCEEE
Confidence 8888999998874466665
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=249.34 Aligned_cols=167 Identities=26% Similarity=0.393 Sum_probs=115.2
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHH---------HHHhhCCCCCC------c------eEEEcCEeCCCCCH---
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLA---------KLLLRLYDPLS------G------CILVDDHDVQNIRL--- 258 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~---------~ll~g~~~~~~------G------~i~~~g~~~~~~~~--- 258 (382)
..|+||||+|++|++++|+|+||||||||+ +++.+...+.. | .+.++..++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 34444443332 3 24455544432110
Q ss_pred H-------H-------------------------------HhcceEEecCCCcccc------------------------
Q 016798 259 D-------S-------------------------------LRRHVGLVSQDITLFS------------------------ 276 (382)
Q Consensus 259 ~-------~-------------------------------~r~~i~~v~Q~~~lf~------------------------ 276 (382)
. . -++..|+++|+..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 0 0123577777776654
Q ss_pred ---------ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC-
Q 016798 277 ---------GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS- 346 (382)
Q Consensus 277 ---------~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~- 346 (382)
.|+.|++.+.... ...++..++++.+++ |+ ..++..+.+||||||||++|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~--~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI--PSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC--HHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCC
T ss_pred cCCHHHHhhCCHHHHHHHHhcc--hhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHHHHHHHHHHHHhhCCC
Confidence 2455555443211 011233333444433 22 2468889999999999999999999876
Q ss_pred --CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 347 --SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 347 --~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
++|||||||++||+.+++.+++.|+++. +++|+|.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIv 863 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIV 863 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7999999999999999999999999885 4788874
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-26 Score=240.89 Aligned_cols=181 Identities=24% Similarity=0.371 Sum_probs=123.0
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHH-HhhCC-------CC----------------
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKL-LLRLY-------DP---------------- 241 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~l-l~g~~-------~~---------------- 241 (382)
..|+++|+++ ..|+||||+|++||++||+|+||||||||++. |+|++ +|
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 3599999986 16999999999999999999999999999996 76654 22
Q ss_pred --CCc-------eEEEcCEeCCCCCH----------HHHhcce---------EEecC----------------------C
Q 016798 242 --LSG-------CILVDDHDVQNIRL----------DSLRRHV---------GLVSQ----------------------D 271 (382)
Q Consensus 242 --~~G-------~i~~~g~~~~~~~~----------~~~r~~i---------~~v~Q----------------------~ 271 (382)
.+| .|.++|.++...+. +.+|..+ +|.++ +
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 356 68899888754322 2233222 22211 1
Q ss_pred Cccc------------------------c-ccHHHHHcCCCCCC---CCCHHHHHHHHHHcChHHHHHhCCCCccc-ccC
Q 016798 272 ITLF------------------------S-GTVAENIGYRDLMT---KIDMERVEHTARTANADEFVRTLPQGYNT-HIG 322 (382)
Q Consensus 272 ~~lf------------------------~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vg 322 (382)
..++ . .||.||+.+..... -...... ....+.++.+ |+.. .++
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~------~~~~~~L~~~--gL~~~~l~ 725 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAI------FRALDTLREV--GLGYLRLG 725 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHH------HHHHHHHHHT--TCTTSBTT
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHH------HHHHHHHHHc--CCCccccc
Confidence 1111 1 25666653321000 0000011 0123344444 4444 357
Q ss_pred CCCCCCChHHHHHHHHHHHccCC---CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 323 PRGSSLSGGQRQRLAIARALYQN---SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 323 e~G~~lSgGq~QrialaRall~~---~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
....+||||||||++|||+|+++ |++|||||||++||..+...+.+.|+++. +++|+|+
T Consensus 726 ~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv 788 (842)
T 2vf7_A 726 QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788 (842)
T ss_dssp CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 77889999999999999999996 69999999999999999999999999885 5778774
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-29 Score=226.71 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=106.8
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH-HHHhcceEEecCCCccccccH--
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHVGLVSQDITLFSGTV-- 279 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v~Q~~~lf~~ti-- 279 (382)
..|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++...+. ...++.++|++|++.+|...+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 877654322 234678999999998775421
Q ss_pred HHHHc---CCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH-----HHHccCCCCEEEE
Q 016798 280 AENIG---YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI-----ARALYQNSSVLIL 351 (382)
Q Consensus 280 ~eNi~---~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial-----aRall~~~~ilil 351 (382)
.+++. +.......+.+++.++++... ...+. .+|||||+||+++ ||+|+.+|++++|
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~------------~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNK------------ICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTC------------EEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCC------------cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 12221 111000122445555554322 22222 6899999999999 8999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHhCC
Q 016798 352 DEATSALDSRSELLVRQAVDRLLGH 376 (382)
Q Consensus 352 DEpts~LD~~~~~~i~~~l~~~~~~ 376 (382)
||||+++|.+++..|.+.+.+..++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~ 176 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIE 176 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998876543
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=216.89 Aligned_cols=175 Identities=18% Similarity=0.229 Sum_probs=121.5
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC----------------------------------------------
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY---------------------------------------------- 239 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~---------------------------------------------- 239 (382)
+++++++.+| +++|+||||||||||+++|..+.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678899999 99999999999999999999543
Q ss_pred ----CCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccc-cccHHHHHcCCCCCC-CC------------CHHHHHHHH
Q 016798 240 ----DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMT-KI------------DMERVEHTA 301 (382)
Q Consensus 240 ----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eNi~~~~~~~-~~------------~~~~~~~~~ 301 (382)
.+.+|.+.+||.++...+...+...+++.+|+..++ .|++.+|+....... .. +.+++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334578899999875545566667889999998866 889999986542110 00 001121111
Q ss_pred HHc------------Ch-HHHHHhCCCCcccccC------CCCCCCChHHHHHHHHHHHcc----CCCCEEEEeCcCCCC
Q 016798 302 RTA------------NA-DEFVRTLPQGYNTHIG------PRGSSLSGGQRQRLAIARALY----QNSSVLILDEATSAL 358 (382)
Q Consensus 302 ~~~------------~l-~~~i~~lp~Gldt~vg------e~G~~lSgGq~QrialaRall----~~~~ililDEpts~L 358 (382)
... .+ ......++.|+++.++ .....||||||||++|||||+ ++|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 00 0111235557766543 235689999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHhCCCceec
Q 016798 359 DSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 359 D~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+.+...+.+.|+++.+++|+|+
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~ 277 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIV 277 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEE
Confidence 99999999999999876777764
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=239.29 Aligned_cols=175 Identities=25% Similarity=0.347 Sum_probs=122.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHh-hCC-------CCCCc-------------e
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-RLY-------DPLSG-------------C 245 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~-g~~-------~~~~G-------------~ 245 (382)
.+++++++. ..|+||||+|++||+++|+|+||||||||++.|+ |.+ .+..| .
T Consensus 629 ~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 629 WLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp EEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred EEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 488888752 3699999999999999999999999999999854 221 12333 3
Q ss_pred EEEcCEeCCCC---CHH-------HH---------hcceEEecCCCccc-------------------------------
Q 016798 246 ILVDDHDVQNI---RLD-------SL---------RRHVGLVSQDITLF------------------------------- 275 (382)
Q Consensus 246 i~~~g~~~~~~---~~~-------~~---------r~~i~~v~Q~~~lf------------------------------- 275 (382)
|.+|+.++... ++. .. .+.+||++|...+-
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 78888877432 111 11 13457887754321
Q ss_pred ------------------------cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCCh
Q 016798 276 ------------------------SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSG 330 (382)
Q Consensus 276 ------------------------~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lSg 330 (382)
..|+.||+.+... . ..+.+ ..+.+..+ |+.. .++....+|||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~---~--~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSG 848 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS---I--PKIKR------KLETLYDV--GLGYMKLGQPATTLSG 848 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS---C--HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc---c--hhHHH------HHHHHHHc--CCCcccccCchhhCCH
Confidence 1134444433221 0 11111 12344444 5555 56778899999
Q ss_pred HHHHHHHHHHHccCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 331 GQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|||||++|||+|+++| ++|||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 849 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999875 9999999999999999999999999875 4778774
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-27 Score=234.04 Aligned_cols=145 Identities=19% Similarity=0.179 Sum_probs=118.7
Q ss_pred CccceeeEEeeCCC--------------------EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHh
Q 016798 203 LVLDQLNLHIRAGE--------------------TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 203 ~~l~~isl~i~~G~--------------------~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r 262 (382)
.+|++|||++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.+.. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999997653 2
Q ss_pred cceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH--HHHHHHHHH
Q 016798 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG--QRQRLAIAR 340 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG--q~QrialaR 340 (382)
.++++|++.....|++||+.++.+ .+.+.+.++..++.+ ++..+ . +||| ||||++|||
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~-----~~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~ 169 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST-----NFPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAK 169 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS-----SCCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch-----HHHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHH
Confidence 278999986556799999877642 223556666666432 12222 2 8999 999999999
Q ss_pred HccC----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 341 ALYQ----------NSSVLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 341 all~----------~~~ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
|+.+ +|++++|||||++||+.++.++.+.++++.
T Consensus 170 aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp HHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999999998873
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-27 Score=230.51 Aligned_cols=183 Identities=15% Similarity=0.159 Sum_probs=121.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCC-CCCCCcEE---------E
Q 016798 122 SFDGCSLVSFITSLVFMIEPIQGVGK-AYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL-DHINGDVK---------F 190 (382)
Q Consensus 122 ~~t~g~l~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~-~~~~~~i~---------~ 190 (382)
.++.+.+.+++.+...+..| .+.. ....+..+..+..|+..+++.+... ........ ....+.++ +
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~-~~~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVN-DETISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSS-TTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccC-CCCceEEEeCCCCCCCCHHHHHhCCCc
Confidence 68888888887776655443 2222 2222222233344555544322111 00000000 00112344 5
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecC
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ 270 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q 270 (382)
++++| | .++++++|+++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+++.+++++
T Consensus 152 ~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~- 223 (330)
T 2pt7_A 152 NLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF- 223 (330)
T ss_dssp TTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC-
T ss_pred Cchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe-
Confidence 56666 5 248999999999999999999999999999999999999999999999875 333222344555543
Q ss_pred CCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEE
Q 016798 271 DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350 (382)
Q Consensus 271 ~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ili 350 (382)
| |||+||++|||||..+|++++
T Consensus 224 ---------------------------------------------g-------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 224 ---------------------------------------------G-------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp ---------------------------------------------B-------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred ---------------------------------------------C-------------CChhHHHHHHHHhhhCCCEEE
Confidence 0 899999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHhCCC-cee
Q 016798 351 LDEATSALDSRSELLVRQAVDRLLGHH-TVR 380 (382)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~~~~~-TvI 380 (382)
|||||+. .+.+.|+++..++ |+|
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi 269 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTL 269 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEE
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEE
Confidence 9999982 3456777776665 555
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-27 Score=228.26 Aligned_cols=142 Identities=15% Similarity=0.174 Sum_probs=111.9
Q ss_pred CCCcEEEEeEEEEeCCCCCCccceeeEE-----------------------eeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 184 INGDVKFCNISFKYADNMPLVLDQLNLH-----------------------IRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 184 ~~~~i~~~~v~f~y~~~~~~~l~~isl~-----------------------i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
..+.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++
T Consensus 40 ~~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TTCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 455799999999994 477777764 89999999999999999999999999999
Q ss_pred CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCC--C-CCCCHHHHHHHHHHcChHHHHHhCCCCc
Q 016798 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL--M-TKIDMERVEHTARTANADEFVRTLPQGY 317 (382)
Q Consensus 241 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~--~-~~~~~~~~~~~~~~~~l~~~i~~lp~Gl 317 (382)
|++|. +++++|+||+++++.|++||+.+... . ...+.+.+.+.+ +.+..|.
T Consensus 116 ~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L---------~~l~~~~ 169 (312)
T 3aez_A 116 RWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFV---------TSVKSGS 169 (312)
T ss_dssp TSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHH---------HHHHTTC
T ss_pred ccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHH---------HHhCCCc
Confidence 98664 46999999999998899999975321 0 112233333333 3333343
Q ss_pred c-cccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCC
Q 016798 318 N-THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359 (382)
Q Consensus 318 d-t~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD 359 (382)
. .. ...|||||+||+++|||++.+|+|||||||++.+|
T Consensus 170 ~~~~----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 170 DYAC----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp SCEE----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred ccCC----cccCChhhhhhhhhHHHhccCCCEEEECCccccCC
Confidence 2 33 35899999999999999999999999999999975
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-25 Score=196.53 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=93.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~ 296 (382)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+. ... .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~--~----- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK--F----- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET--T-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh--c-----
Confidence 689999999999999999999994 667777654332224577899999987 3334431 100 0
Q ss_pred HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH-----ccCCCCEEEEeC--cCCCCCHHHHHHHHHH
Q 016798 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA-----LYQNSSVLILDE--ATSALDSRSELLVRQA 369 (382)
Q Consensus 297 ~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa-----ll~~~~ililDE--pts~LD~~~~~~i~~~ 369 (382)
.+ .+..++..+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.
T Consensus 64 ----------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~ 125 (178)
T 1ye8_A 64 ----------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI 125 (178)
T ss_dssp ----------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH
T ss_pred ----------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH
Confidence 00 0134667778999999999999996 999999999999 9999999999999988
Q ss_pred HHHHhCCCcee
Q 016798 370 VDRLLGHHTVR 380 (382)
Q Consensus 370 l~~~~~~~TvI 380 (382)
+++ .+.|+|
T Consensus 126 l~~--~~~~~i 134 (178)
T 1ye8_A 126 MHD--PNVNVV 134 (178)
T ss_dssp HTC--TTSEEE
T ss_pred Hhc--CCCeEE
Confidence 876 344454
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=190.68 Aligned_cols=135 Identities=20% Similarity=0.262 Sum_probs=93.7
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCc--cccccHHHHHc
Q 016798 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT--LFSGTVAENIG 284 (382)
Q Consensus 207 ~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~ti~eNi~ 284 (382)
|+||++++||+++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.++.++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 22222 223333 67778763 23333333321
Q ss_pred CCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHH-
Q 016798 285 YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE- 363 (382)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~- 363 (382)
... ...+..|+.+.+.. -...|||||||++||||+..+|++++|||||++||+.++
T Consensus 64 --------------~~~--------~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 --------------YIV--------SKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp --------------HHH--------HHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred --------------HHH--------HHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 000 01112355554443 345699999999999999999999999999999999944
Q ss_pred ---------------HHHHHHHHHHh-CCCceec
Q 016798 364 ---------------LLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 364 ---------------~~i~~~l~~~~-~~~TvI~ 381 (382)
..+.+.++++. ++.|+|+
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~ 154 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVY 154 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEE
Confidence 77787776653 3677764
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-25 Score=211.00 Aligned_cols=139 Identities=17% Similarity=0.230 Sum_probs=88.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHHcCCCCCCC-CCH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTK-IDM 294 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~-~~~ 294 (382)
.++|+||||||||||+++|+|++.|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.++..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 2346789999999998865 99999998864221 122
Q ss_pred HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 295 ~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
+.+.+.+. .++...++ ..||||||||+++|||++. +++|||||++||+.. ..+ ++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~---l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEF---MKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHH---HHHHH
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHH---HHHHH
Confidence 33433333 33333332 4799999999999999886 999999999999986 333 33443
Q ss_pred CCCcee
Q 016798 375 GHHTVR 380 (382)
Q Consensus 375 ~~~TvI 380 (382)
+..++|
T Consensus 139 ~~~~vI 144 (270)
T 3sop_A 139 KVVNII 144 (270)
T ss_dssp TTSEEE
T ss_pred hcCcEE
Confidence 335554
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.7e-26 Score=197.92 Aligned_cols=136 Identities=17% Similarity=0.213 Sum_probs=99.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEeCCCCC---HHHHh-cceE----EecCCCccccccHHHHHc
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIR---LDSLR-RHVG----LVSQDITLFSGTVAENIG 284 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~~~~~~---~~~~r-~~i~----~v~Q~~~lf~~ti~eNi~ 284 (382)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988776 66777 4788 899999988 221
Q ss_pred CCCCCCCCCHHHHHHHHHHcChHHHHHh-CCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEE-------EEeCcCC
Q 016798 285 YRDLMTKIDMERVEHTARTANADEFVRT-LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVL-------ILDEATS 356 (382)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~-lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~il-------ilDEpts 356 (382)
+ ++ +. .+++++++.. +| |+||.++|+ |||||||||+||||++++|++. +=|.|..
T Consensus 77 -~------~~-~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~ 139 (171)
T 2f1r_A 77 -V------SE-EE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVD 139 (171)
T ss_dssp -C------CH-HH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCS
T ss_pred -C------Ch-hh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccCccceEEEEecCCcc
Confidence 1 12 21 7899999999 99 999999995 9999999999999999999873 1244421
Q ss_pred ---CCCHHHHHHHHHHHHHHh
Q 016798 357 ---ALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 357 ---~LD~~~~~~i~~~l~~~~ 374 (382)
-+|.+....+.+.+.+..
T Consensus 140 ~~~~f~~~~~~~~a~~i~~~~ 160 (171)
T 2f1r_A 140 GHKWFRRDEVERIAEFILSLL 160 (171)
T ss_dssp SSCEECTTCHHHHHHHHHHHH
T ss_pred cCcccCcccHHHHHHHHHHHH
Confidence 234445566666665443
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-24 Score=204.18 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=102.0
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC----HHHH--hcceEEecCCCc-cccc-
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSL--RRHVGLVSQDIT-LFSG- 277 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-lf~~- 277 (382)
+++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4678899999999999999999999999999999999999999999876542 1233 457999999998 7654
Q ss_pred cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC--EEEEeCcC
Q 016798 278 TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEAT 355 (382)
Q Consensus 278 ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~--ililDEpt 355 (382)
|++||+.++.. ...+ ...++.+++ .........+|| |||++||||+..+|+ +|+|| ||
T Consensus 171 ~v~e~l~~~~~-~~~d----~~lldt~gl-----------~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 230 (302)
T 3b9q_A 171 VLSKAVKRGKE-EGYD----VVLCDTSGR-----------LHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 230 (302)
T ss_dssp HHHHHHHHHHH-TTCS----EEEECCCCC-----------SSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GG
T ss_pred HHHHHHHHHHH-cCCc----chHHhcCCC-----------CcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CC
Confidence 99999965321 0111 011122222 111111123588 999999999999999 99999 99
Q ss_pred CCCCHHHH
Q 016798 356 SALDSRSE 363 (382)
Q Consensus 356 s~LD~~~~ 363 (382)
+++|+.+.
T Consensus 231 sglD~~~~ 238 (302)
T 3b9q_A 231 TGLNMLPQ 238 (302)
T ss_dssp GGGGGHHH
T ss_pred CCcCHHHH
Confidence 99999865
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-24 Score=201.12 Aligned_cols=170 Identities=19% Similarity=0.180 Sum_probs=134.7
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC-CceEEEcCEeCCCCCHHHHhcceEEecC-----CCcccc
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLRRHVGLVSQ-----DITLFS 276 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~lf~ 276 (382)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+++++| ++.-|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 4899999 9999999999999999999999999999998 999999998876442 345677888 666678
Q ss_pred ccHHHHHcCCCC----CCCCCHHHHHHHHHHcC-----------------hHHHH------------HhCCCCcccccCC
Q 016798 277 GTVAENIGYRDL----MTKIDMERVEHTARTAN-----------------ADEFV------------RTLPQGYNTHIGP 323 (382)
Q Consensus 277 ~ti~eNi~~~~~----~~~~~~~~~~~~~~~~~-----------------l~~~i------------~~lp~Gldt~vge 323 (382)
.+++.++..... +...|.+.+..+++.+. ++..+ ..+++++++.+++
T Consensus 89 ~~la~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~q 168 (261)
T 2eyu_A 89 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 168 (261)
T ss_dssp HHHHHHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred HHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEEE
Confidence 889999876321 01115666655554421 11111 2355789999999
Q ss_pred CCCCCChHHHHHHHHHHHccCCCCE--EEEeCcCCCCCHHH---------HHHHHHHHHHHhCCCcee
Q 016798 324 RGSSLSGGQRQRLAIARALYQNSSV--LILDEATSALDSRS---------ELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRall~~~~i--lilDEpts~LD~~~---------~~~i~~~l~~~~~~~TvI 380 (382)
++..+|+| ||++++|+++.+|++ +|+||+|+++|... +..++++++.+.+++|.+
T Consensus 169 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~ 234 (261)
T 2eyu_A 169 RLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITL 234 (261)
T ss_dssp EEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCH
T ss_pred EeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCH
Confidence 99999999 999999999999999 99999999999863 446788888888999875
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-23 Score=202.17 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=103.4
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC----HHHH--hcceEEecCCCc-ccc-c
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSL--RRHVGLVSQDIT-LFS-G 277 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ 277 (382)
+.+||++++|++++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578899999999999999999999999999999999999999999876532 1233 457999999998 664 4
Q ss_pred cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC--EEEEeCcC
Q 016798 278 TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEAT 355 (382)
Q Consensus 278 ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~--ililDEpt 355 (382)
|++||+.++.. ...+ . ..++.+++ .........+|| |||++||||+..+|+ +|+|| ||
T Consensus 228 tv~e~l~~~~~-~~~d-~---~lldt~Gl-----------~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 287 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYD-V---VLCDTSGR-----------LHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 287 (359)
T ss_dssp HHHHHHHHHHH-TTCS-E---EEEECCCC-----------SSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GG
T ss_pred hHHHHHHHHHh-CCCH-H---HHHHhcCC-----------ChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CC
Confidence 99999975421 0111 0 11122222 111111123578 999999999999999 99999 99
Q ss_pred CCCCHHHH
Q 016798 356 SALDSRSE 363 (382)
Q Consensus 356 s~LD~~~~ 363 (382)
+++|+.+.
T Consensus 288 tglD~~~~ 295 (359)
T 2og2_A 288 TGLNMLPQ 295 (359)
T ss_dssp GGGGGHHH
T ss_pred CCCCHHHH
Confidence 99999865
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.4e-21 Score=186.28 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=52.8
Q ss_pred CCCCCCChHHHHHHHHHHHcc------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 323 PRGSSLSGGQRQRLAIARALY------QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 323 e~G~~lSgGq~QrialaRall------~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
....+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~ 340 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVF 340 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345689999999999999999 7999999999999999999999999999875 4678764
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-24 Score=207.71 Aligned_cols=170 Identities=20% Similarity=0.205 Sum_probs=135.8
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC-CceEEEcCEeCCCCCHHHHhcceEEecC-----CCcccc
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLRRHVGLVSQ-----DITLFS 276 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~lf~ 276 (382)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.+.+.++. + .++..+++|+| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677765 8999999999999999999999999999998 899987776653 2 35778999999 888999
Q ss_pred ccHHHHHcCCCCCC-----CCCHHHHHHHHHHcCh-----------------HHHH------------HhCCCCcccccC
Q 016798 277 GTVAENIGYRDLMT-----KIDMERVEHTARTANA-----------------DEFV------------RTLPQGYNTHIG 322 (382)
Q Consensus 277 ~ti~eNi~~~~~~~-----~~~~~~~~~~~~~~~l-----------------~~~i------------~~lp~Gldt~vg 322 (382)
+++++|++.. |+. ..+.+.+..+++.+.. +..+ ..+++++++.++
T Consensus 200 ~~l~~~L~~~-pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTSC-CSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhhC-cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 9999999874 311 1166777777766542 1121 224678999999
Q ss_pred CCCCCCChHHHHHHHHHHHccCCCCE--EEEeCcCCCCCHH----H-----HHHHHHHHHHHhCCCceec
Q 016798 323 PRGSSLSGGQRQRLAIARALYQNSSV--LILDEATSALDSR----S-----ELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 323 e~G~~lSgGq~QrialaRall~~~~i--lilDEpts~LD~~----~-----~~~i~~~l~~~~~~~TvI~ 381 (382)
+++..+|+| ||++++|+++.+|++ +|+||+|++||.. + +..++++++.+.+++|.+.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~ 346 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLE 346 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTT
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHH
Confidence 999999999 999999999999999 9999999999965 3 3457778888888888764
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-23 Score=202.49 Aligned_cols=148 Identities=17% Similarity=0.248 Sum_probs=107.7
Q ss_pred ccceeeEEeeC--CCEEEEECCCCCcHHHHHHHHhhCCCCCC----ceEEEc----CEeCCCCCHHHHhcceEEecCCCc
Q 016798 204 VLDQLNLHIRA--GETVALIGPSGGGKSTLAKLLLRLYDPLS----GCILVD----DHDVQNIRLDSLRRHVGLVSQDIT 273 (382)
Q Consensus 204 ~l~~isl~i~~--G~~~aivG~sGsGKSTl~~ll~g~~~~~~----G~i~~~----g~~~~~~~~~~~r~~i~~v~Q~~~ 273 (382)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|.++ |.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 999874 5555 4555555 56999999999
Q ss_pred cccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCC--ccc--------ccCCCCCCCChHHHHHHHHHHHc-
Q 016798 274 LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQG--YNT--------HIGPRGSSLSGGQRQRLAIARAL- 342 (382)
Q Consensus 274 lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~G--ldt--------~vge~G~~lSgGq~QrialaRal- 342 (382)
+|.+|++||+.+++. +..+..............++..++.+ ++. +..++|.++|+||+||++++|++
T Consensus 235 ~~~~t~~~nl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~ 312 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT--DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLK 312 (365)
T ss_dssp HHHHHHCSSEEEESS--CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHH
T ss_pred HHHHhccCCEEEEeC--CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHH
Confidence 999999999988753 22234444444444445555555433 333 33367888999999999999999
Q ss_pred --cC--CCCEEEEeCcC
Q 016798 343 --YQ--NSSVLILDEAT 355 (382)
Q Consensus 343 --l~--~~~ililDEpt 355 (382)
++ +++++++||||
T Consensus 313 ~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 313 KLLDKYKVPYIEIESPS 329 (365)
T ss_dssp HHHHGGGCCCEEEECSS
T ss_pred HHHHHcCCCEEEeCCCC
Confidence 77 89999999997
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-25 Score=215.65 Aligned_cols=223 Identities=16% Similarity=0.091 Sum_probs=148.8
Q ss_pred HHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCCC-CCCCcE
Q 016798 111 LCGGSLLVSG-GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLD-HINGDV 188 (382)
Q Consensus 111 ~~~g~~lv~~-g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~-~~~~~i 188 (382)
.+.|.+.+.. +.++.+.+.+++.+...+..| .+......+..+..+..|+..++ ++............ ...+.+
T Consensus 52 ~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~i 127 (361)
T 2gza_A 52 ERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRR 127 (361)
T ss_dssp EETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCC
T ss_pred EECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCC
Confidence 3446665555 789999999998887766555 23222222333334455666655 22211111000000 012335
Q ss_pred ---------EEEeEEEE---eCCCCCCcc---------ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE
Q 016798 189 ---------KFCNISFK---YADNMPLVL---------DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247 (382)
Q Consensus 189 ---------~~~~v~f~---y~~~~~~~l---------~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~ 247 (382)
+|++|+|+ |++.++++| +++||+|++|+.++|+||||||||||+++|+|+++|++|.|.
T Consensus 128 tl~~l~~~g~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ 207 (361)
T 2gza_A 128 TLEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLIT 207 (361)
T ss_dssp CHHHHHHTTTTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEE
T ss_pred CHHHHHhcCCcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEE
Confidence 78899998 864223455 999999999999999999999999999999999999999999
Q ss_pred EcCEeCCCCCHHHHhcceEEec-CCCcc---ccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCC
Q 016798 248 VDDHDVQNIRLDSLRRHVGLVS-QDITL---FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323 (382)
Q Consensus 248 ~~g~~~~~~~~~~~r~~i~~v~-Q~~~l---f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge 323 (382)
++|. .++.....++.+++++ |++.+ +..|+++||.++... .++..+...++...+.+++..+|.|++|.+++
T Consensus 208 ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~--~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t 283 (361)
T 2gza_A 208 IEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM--KPTRILLAELRGGEAYDFINVAASGHGGSITS 283 (361)
T ss_dssp EESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS--CCSEEEESCCCSTHHHHHHHHHHTTCCSCEEE
T ss_pred ECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc--CCCEEEEcCchHHHHHHHHHHHhcCCCeEEEE
Confidence 9985 4555555678899999 99876 788999999865431 11222222233345667889999999999999
Q ss_pred CCCCCChHHHHHHHHHHH
Q 016798 324 RGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 324 ~G~~lSgGq~QrialaRa 341 (382)
-+.+-+.+..+|+.....
T Consensus 284 ~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 284 CHAGSCELTFERLALMVL 301 (361)
T ss_dssp EECSSHHHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHHh
Confidence 888878889999987764
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.6e-23 Score=204.25 Aligned_cols=156 Identities=16% Similarity=0.123 Sum_probs=122.1
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE---eCCCCC-----
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH---DVQNIR----- 257 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~---~~~~~~----- 257 (382)
+.++++++++.|+.+ ..+|+++ |+|++|++++|+||||||||||+++|+|+++|+.|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 468899999999743 4599999 999999999999999999999999999999999999999998 554321
Q ss_pred HHHHhcceEEecCC-Cccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCChHHHH
Q 016798 258 LDSLRRHVGLVSQD-ITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQRQ 334 (382)
Q Consensus 258 ~~~~r~~i~~v~Q~-~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lSgGq~Q 334 (382)
...+++.++|++|+ ..++ ..|+.+|+.+.. +.... .+.+. .+-+...+||+|| |
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a--------e~~~~--------------~~~~v~~~ld~l~~lS~g~-q 264 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIA--------EDFRD--------------RGQHVLLIMDSLTRYAMAQ-R 264 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH--------HHHHT--------------TTCEEEEEEECHHHHHHHH-H
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHH--------HHHHh--------------CCCCHHHHHHhHHHHHHHH-H
Confidence 34578889999995 3344 558999986421 11110 01110 0112356899999 9
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
|++|| +.+|++ |++||+.+...+.+.++++.+
T Consensus 265 rvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~ 296 (438)
T 2dpy_A 265 EIALA---IGEPPA------TKGYPPSVFAKLPALVERAGN 296 (438)
T ss_dssp HHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSC
T ss_pred HHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHh
Confidence 99999 899998 999999999999999998865
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-22 Score=180.05 Aligned_cols=152 Identities=16% Similarity=0.048 Sum_probs=96.1
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHH
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVA 280 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 280 (382)
.++++| .+|++||+++|+||||||||||+++|+|++++ |.+++.....-+....++.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 79999999999999999999999999999963 44443211111112235679999999998865 777
Q ss_pred HHHcC-----CC-CCCCCCHHHHHHH----------HHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 281 ENIGY-----RD-LMTKIDMERVEHT----------ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 281 eNi~~-----~~-~~~~~~~~~~~~~----------~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+|+.. ++ .....+.+++.+. ++..++.++....| ..|| ||+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence 77632 10 0001223333332 23334444444444 2344 9999
Q ss_pred CCCEEEEeCcCCCC----CHHHHHHHHHHHHHHhC--CCceec
Q 016798 345 NSSVLILDEATSAL----DSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~L----D~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|++++|||||+++ |+...+++.+.++++.+ +.|+|+
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~ 183 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVV 183 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEE
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEE
Confidence 99999999999998 67788999999988853 567764
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-22 Score=177.09 Aligned_cols=169 Identities=18% Similarity=0.177 Sum_probs=104.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC-----CCCCceEEE-------cCEeCCC
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY-----DPLSGCILV-------DDHDVQN 255 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~-----~~~~G~i~~-------~g~~~~~ 255 (382)
|+++|++|+|+. +++++ |++++|++++|+|+||||||||++.|+|.. .|+.|.+.+ ++..+.+
T Consensus 4 l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 4 LNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp -------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 788999999962 57888 899999999999999999999999999998 888888764 2232221
Q ss_pred CC-----------HHHHhcceEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc-ccC
Q 016798 256 IR-----------LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIG 322 (382)
Q Consensus 256 ~~-----------~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vg 322 (382)
.+ .+.+++.++++.|+...+++ .+..++..+. ...++++.+.++ . .+... .++
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~---~~~~~~~~~~~~---------~--~~~~~~~v~ 144 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL---KDLDQQMIEWAV---------D--SNIAVLVLL 144 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC---CHHHHHHHHHHH---------H--TTCCEEEEE
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC---chhHHHHHHHHH---------H--cCCCeEEEE
Confidence 11 12334445555554333333 3333333221 001122222222 1 12222 235
Q ss_pred CCCCCCChHHHHH-HHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 323 PRGSSLSGGQRQR-LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 323 e~G~~lSgGq~Qr-ialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
..-..+|+||||| +..+|+++.+|+++++|||||++|..+...+.+.|.++.+
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 5566899999999 8999999999999999999999999999999999988654
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-21 Score=179.73 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=87.3
Q ss_pred CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHH
Q 016798 201 MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVA 280 (382)
Q Consensus 201 ~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 280 (382)
..++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.+++++|++.....|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 456999999999999999999999999999999999987 556554 357789999999743345899
Q ss_pred HHHcCCCCCC------CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCc
Q 016798 281 ENIGYRDLMT------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (382)
Q Consensus 281 eNi~~~~~~~------~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEp 354 (382)
+|+.+..... ..+.+.+.+.++. +.++.+.. ...||+||+||+++ ++++.+|+++|+|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVE----VPTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEE----ECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCee----cccccccccCccCc-eEEecCCCEEEEeCc
Confidence 9875422110 1222333333322 22233433 35899999999988 799999999999999
Q ss_pred CCCCCH
Q 016798 355 TSALDS 360 (382)
Q Consensus 355 ts~LD~ 360 (382)
....|.
T Consensus 143 ~~~~~~ 148 (245)
T 2jeo_A 143 LVFYSQ 148 (245)
T ss_dssp TTTTSH
T ss_pred cccccH
Confidence 887764
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-21 Score=170.35 Aligned_cols=127 Identities=24% Similarity=0.298 Sum_probs=98.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCH
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM 294 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~ 294 (382)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..++. .++++++|++|+. .++ ++|+..... ..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~--~~~- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGL--EPP- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCC--CCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccc--cCC-
Confidence 78999999999999999999999999 999 999999886543 5688999999986 333 334321100 000
Q ss_pred HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH-HHHH---HccCCCCEEEEeC--cCCCCCHHHHHHHHH
Q 016798 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL-AIAR---ALYQNSSVLILDE--ATSALDSRSELLVRQ 368 (382)
Q Consensus 295 ~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri-alaR---all~~~~ililDE--pts~LD~~~~~~i~~ 368 (382)
+...+..+|+.+..+|+|||+++ +++| |++.+|+++|||| ||..+|......+.+
T Consensus 70 -------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~ 130 (189)
T 2i3b_A 70 -------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQ 130 (189)
T ss_dssp -------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHH
T ss_pred -------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHH
Confidence 11234478999999999999998 5566 7899999999999 898899987777766
Q ss_pred HHH
Q 016798 369 AVD 371 (382)
Q Consensus 369 ~l~ 371 (382)
.++
T Consensus 131 ~l~ 133 (189)
T 2i3b_A 131 TLS 133 (189)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.9e-22 Score=177.46 Aligned_cols=135 Identities=14% Similarity=0.125 Sum_probs=102.5
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc---cHHHHHcC--C
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG---TVAENIGY--R 286 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~---ti~eNi~~--~ 286 (382)
.++|+++||+||||||||||+++|+|++.| +++|++||+++++. |+++|..+ +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 58999999998843 67777654 2
Q ss_pred CCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH----HHHHHHHHHccCCCCEEEEeCcCCC-----
Q 016798 287 DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ----RQRLAIARALYQNSSVLILDEATSA----- 357 (382)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq----~QrialaRall~~~~ililDEpts~----- 357 (382)
.+ ...+.+.+.++++..++.+.+.. .+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~-~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~ 128 (211)
T 3asz_A 61 HP-DAFDLALYLEHAQALLRGLPVEM-----------PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLK 128 (211)
T ss_dssp SG-GGBCHHHHHHHHHHHHTTCCEEE-----------CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEE
T ss_pred Ch-hhhhHHHHHHHHHHHHcCCCcCC-----------CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEE
Confidence 22 12355667677666544333222 235567774 5799999999999999999999999
Q ss_pred --CCHHHHHHHHHHHHHHh--CCCcee
Q 016798 358 --LDSRSELLVRQAVDRLL--GHHTVR 380 (382)
Q Consensus 358 --LD~~~~~~i~~~l~~~~--~~~TvI 380 (382)
||..++.++.+.+++.. +++|++
T Consensus 129 i~ld~~~~~~~~r~l~r~~~~~g~t~~ 155 (211)
T 3asz_A 129 VFVDADADERFIRRLKRDVLERGRSLE 155 (211)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSCCCHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHhCCCHH
Confidence 99999999999987753 466654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-22 Score=180.01 Aligned_cols=138 Identities=21% Similarity=0.229 Sum_probs=108.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC-------------CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccH
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD-------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTV 279 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti 279 (382)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+.+.+++.+ +|++++|.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 6899999999999999999999999986 78887 589988888888888875 79999999999
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH-HccCCCCEEEEeCcCCCC
Q 016798 280 AENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR-ALYQNSSVLILDEATSAL 358 (382)
Q Consensus 280 ~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR-all~~~~ililDEpts~L 358 (382)
.+|+ +|. ++++++++++.....- .+-.|+|+++.... ++ .|| +++.+|++++|||+|+++
T Consensus 77 ~~n~-~g~-----~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~ 137 (198)
T 1lvg_A 77 SGNL-YGT-----SKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLR 137 (198)
T ss_dssp TTEE-EEE-----EHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHH
T ss_pred cCcc-CCC-----CHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhc
Confidence 9998 553 4678888876532110 11234566665321 12 567 899999999999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 016798 359 DSRSELLVRQAVDRLL 374 (382)
Q Consensus 359 D~~~~~~i~~~l~~~~ 374 (382)
|.++++.|.+.|.+..
T Consensus 138 d~~~e~~i~~~l~~~~ 153 (198)
T 1lvg_A 138 NTETEESLAKRLAAAR 153 (198)
T ss_dssp TCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987764
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-18 Score=165.86 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=48.1
Q ss_pred CCChHHHHHHHHHHHcc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 327 SLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 327 ~lSgGq~QrialaRall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
.|||||+||++|||+|+ .+|+||+||||||+||+.....+.+.++++. .|+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i 325 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIV 325 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEE
Confidence 69999999999999999 8999999999999999999999999998864 5655
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.3e-21 Score=180.18 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=94.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCC-
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK- 291 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~- 291 (382)
+++.+++|+|+||||||||+++|.+++.+. | .. ++.+.+|+||+++|+.++++|+.++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g--------------~~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y--------------GG-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H--------------GG-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C--------------CC-CceEEEeccccccCChHHHHHHhccccccch
Confidence 467899999999999999999999999764 2 01 445667799999999999999976531100
Q ss_pred CCHHHHHHHHHHcChHHHHHhCCCCcccc------cCCCCCCCChHHHHHHHHH--HHccCCCCEEEEeCcCCCCCHHH
Q 016798 292 IDMERVEHTARTANADEFVRTLPQGYNTH------IGPRGSSLSGGQRQRLAIA--RALYQNSSVLILDEATSALDSRS 362 (382)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~i~~lp~Gldt~------vge~G~~lSgGq~Qriala--Rall~~~~ililDEpts~LD~~~ 362 (382)
.+....-.+.+...+.+++..+++|++|. +...+..+||||+||+++| |++ +|+|+|+||+|+++|++.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 00000001112234567889999998764 4566889999999999998 555 999999999999999853
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-18 Score=185.25 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=103.5
Q ss_pred CCcEEEEeEEEEeCC---CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-CCCceEEEcCEeCCCCCHHH
Q 016798 185 NGDVKFCNISFKYAD---NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~---~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~ 260 (382)
.+.|++++. ++|- ++..+++|+||+ |++++|+||||||||||+|+++|+.. |+.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 457889887 4453 335789999999 99999999999999999999999974 6778753 1 1
Q ss_pred HhcceEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 016798 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qriala 339 (382)
.+..+++++| +|.. ++.||+.. .+|+|++|++.+|
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~-----------------------------------------g~S~~~~e~~~la 647 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG-----------------------------------------GKSTFMVEMEEVA 647 (765)
T ss_dssp SEEEECCCSE---EEEECCC-----------------------------------------------CCSHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh-----------------------------------------cccHHHHHHHHHH
Confidence 2456888877 5543 56665522 2578999999999
Q ss_pred HHc--cCCCCEEEEeCc---CCCCCHHHH-HHHHHHHHHHhCCCceec
Q 016798 340 RAL--YQNSSVLILDEA---TSALDSRSE-LLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 340 Ral--l~~~~ililDEp---ts~LD~~~~-~~i~~~l~~~~~~~TvI~ 381 (382)
+++ +.+|+++||||| |+++|..+. ..+.+.|.+ .++|+|+
T Consensus 648 ~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~ 693 (765)
T 1ewq_A 648 LILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLF 693 (765)
T ss_dssp HHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEE
T ss_pred HHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEE
Confidence 999 999999999999 999999875 578888877 4667663
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.9e-20 Score=174.06 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=72.7
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC-CCCCCceEEEcCEeCCCCCHHHHhcceEEec
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL-YDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 269 (382)
+||++.|+. ..++++++|+| +|+||||+|||||++.|+|. ..|++| |.++|.++.. .. . ++.+++++
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEEe
Confidence 478888964 36999999998 99999999999999999998 889999 8888877643 11 1 45689999
Q ss_pred CCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCE
Q 016798 270 QDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV 348 (382)
Q Consensus 270 Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~i 348 (382)
|++.++ .-|++|+..++.... ..++.....+. +.+..+. .-.++|||||||+++|||+. +
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~--~~e~~~~l~~~--l~~~~~~-----------~~~~~sgg~rqrv~~ara~~----l 130 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAIN--CRDCFKTIISY--IDEQFER-----------YLHDESGLNRRHIIDNRVHC----C 130 (301)
T ss_dssp C---CCEEEEEEEEC-------------CTTHHHH--HHHHHHH-----------HHHHHTSSCCTTCCCCCCCE----E
T ss_pred cCCCcccCcchhhhhhhhhhcC--cHHHHHHHHHH--HHHHHHH-----------HHHHhCHHhhhhhhhhhhhh----e
Confidence 988765 559999987764210 11111111111 1111111 12579999999999999986 9
Q ss_pred EEEeCcCCC-CCHHHHHHHHHHHHHHhC
Q 016798 349 LILDEATSA-LDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 349 lilDEpts~-LD~~~~~~i~~~l~~~~~ 375 (382)
+++||||++ ||+... +.++++.+
T Consensus 131 l~ldePt~~~Ld~~~~----~~l~~l~~ 154 (301)
T 2qnr_A 131 FYFISPFGHGLKPLDV----AFMKAIHN 154 (301)
T ss_dssp EEEECSSSSSCCHHHH----HHHHHHTT
T ss_pred eeeecCcccCCCHHHH----HHHHHHHh
Confidence 999999985 999863 44444443
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-18 Score=185.72 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=101.7
Q ss_pred CcEEEEe-----EEEEeCCCCCCccceeeEEeeC-------CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC
Q 016798 186 GDVKFCN-----ISFKYADNMPLVLDQLNLHIRA-------GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (382)
Q Consensus 186 ~~i~~~~-----v~f~y~~~~~~~l~~isl~i~~-------G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~ 253 (382)
+.|+++| |++.|+++ ..+++|++|++++ |++++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 4599999 99999533 4699999999987 999999999999999999999 99863
Q ss_pred CCCCHHHHhcceE-EecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 254 QNIRLDSLRRHVG-LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 254 ~~~~~~~~r~~i~-~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
..++| ||||++. ..|+.|||... .++.+.+.. | -..+|+++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~r-----------------ig~~d~~~~---~--------~stf~~em 856 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFTR-----------------LGASDRIMS---G--------ESTFFVEL 856 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEEE-----------------CC--------------------CHHHHHH
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHHH-----------------cCCHHHHhh---c--------hhhhHHHH
Confidence 34566 9999983 55777877321 111111111 2 13567766
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHH-HHHHHHHHHHhC--CCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSE-LLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~-~~i~~~l~~~~~--~~TvI~ 381 (382)
++ +++||+++.+|+++||||||+|+|+... ..+.+.++.+.+ ++|+|+
T Consensus 857 ~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~ 907 (1022)
T 2o8b_B 857 SE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLF 907 (1022)
T ss_dssp HH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred HH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 64 9999999999999999999999999874 456777777653 567663
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.8e-19 Score=169.84 Aligned_cols=157 Identities=16% Similarity=0.152 Sum_probs=115.1
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC-------CCH
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-------IRL 258 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~-------~~~ 258 (382)
.-++.+++++.|+.+ ..+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|.+..+ +..
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 357889999999743 4599999 9999999999999999999999999999999999999998865221 112
Q ss_pred HHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccc-cCCCCCCCChHHHHHHH
Q 016798 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~-vge~G~~lSgGq~Qria 337 (382)
..+++.+.+++|.+. ...+++..+.....+.++... .|.+.. +-+...+||+|| ||++
T Consensus 122 ~~~~~~v~~~~~~~~------------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~ 180 (347)
T 2obl_A 122 STLSKCVLVVTTSDR------------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVG 180 (347)
T ss_dssp HHHTTEEEEEECTTS------------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHH
T ss_pred hhhhceEEEEECCCC------------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHH
Confidence 223444555555321 013444445555555555433 233321 113457899999 9999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
+| +.+|++ |+|+|+.....+.+.++++.
T Consensus 181 la---l~~p~~------t~Gldp~~~~~l~~ller~~ 208 (347)
T 2obl_A 181 LA---SGEPDV------RGGFPPSVFSSLPKLLERAG 208 (347)
T ss_dssp HH---TTCCCC------BTTBCHHHHHHHHHHHTTCE
T ss_pred HH---cCCCCc------ccCCCHHHHHHHHHHHHHHh
Confidence 99 688887 99999999999999998875
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-20 Score=191.31 Aligned_cols=157 Identities=17% Similarity=0.265 Sum_probs=98.5
Q ss_pred cEEEEeEEEEeCCCCCCcccee----------eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEEcCEeCCC
Q 016798 187 DVKFCNISFKYADNMPLVLDQL----------NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQN 255 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~i----------sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~~g~~~~~ 255 (382)
.++++|+++.|++...++|+.+ +++++. +|||||||||||||+++|+|++.| ++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5788999999975433455544 366765 999999999999999999999988 79999999998632
Q ss_pred ---CCHHHHhcceEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH
Q 016798 256 ---IRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (382)
Q Consensus 256 ---~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG 331 (382)
-....+|+.++|++|++.+++. |++||+.+.. .. +.. .+..+|
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~--------------~~------~~~-----------~~~~~s-- 133 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ--------------NA------IAG-----------EGMGIS-- 133 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH--------------HH------HHC-----------SSSCCC--
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHH--------------HH------hcC-----------Cccccc--
Confidence 1234678899999999998765 8999984310 00 100 011122
Q ss_pred HHHHHHHHHHccCCCCEEEEeCc------CCCCCHHHHHHHHHHHHHHh-CCCcee
Q 016798 332 QRQRLAIARALYQNSSVLILDEA------TSALDSRSELLVRQAVDRLL-GHHTVR 380 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEp------ts~LD~~~~~~i~~~l~~~~-~~~TvI 380 (382)
++++.++.+...+|+++++||| |++||+..+..+.+.++++. ++++++
T Consensus 134 -~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~ii 188 (608)
T 3szr_A 134 -HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETIS 188 (608)
T ss_dssp -SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCE
T ss_pred -hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 2445556666778999999999 99999999999999999964 344443
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-19 Score=176.91 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=91.8
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
+.|.++||+++|++ ..+++|+||+| +|+|+||||||||++.|+|...|..| .+|.++... ....+..+
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeE
Confidence 35889999999975 36999999998 99999999999999999999986555 233332211 11124568
Q ss_pred EEecCCCccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
++++|++.++ ..|++||+.++... +.++.+.. +.+++.. .++.+.+||++||||+++
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~---~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~ 135 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAV---DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMP 135 (418)
T ss_dssp ECC------CEEEEEEECC--------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhc---cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhcc
Confidence 9999998887 56999999887531 11111111 1223321 344566789999999999
Q ss_pred CCC---EEEEeCcC-CCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 345 NSS---VLILDEAT-SALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 345 ~~~---ililDEpt-s~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
+|+ +|++|||| ++||+... . .++.+.++.++|
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~-~---~lk~L~~~v~iI 171 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDI-E---FMKRLHEKVNII 171 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHH-H---HHHHHTTTSEEE
T ss_pred CCCeeEEEEEecCcccCCCHHHH-H---HHHHHhccCcEE
Confidence 999 99999999 69998763 2 333444444443
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-20 Score=189.04 Aligned_cols=152 Identities=14% Similarity=0.073 Sum_probs=104.5
Q ss_pred EeCCCCCCccceeeE-EeeCCCEEEEECCCCCcHHHHHHH--HhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCC
Q 016798 196 KYADNMPLVLDQLNL-HIRAGETVALIGPSGGGKSTLAKL--LLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI 272 (382)
Q Consensus 196 ~y~~~~~~~l~~isl-~i~~G~~~aivG~sGsGKSTl~~l--l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 272 (382)
+|+.+ .++|+++|+ .|++|++++|+||||||||||+++ +.|+++|.+|.|.++|.+. ..+....++.+||++|++
T Consensus 20 ~~~~g-~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 20 KMRTM-IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKL 97 (525)
T ss_dssp EECCC-CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHH
T ss_pred cccCC-chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHh
Confidence 45543 469999999 999999999999999999999999 6899999999999999873 223334567899999997
Q ss_pred ccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEe
Q 016798 273 TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352 (382)
Q Consensus 273 ~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililD 352 (382)
... +|+.+.... . + ++..++++..++.+.....| ..|||| +|++++||
T Consensus 98 ~~~-----~~l~~~~~~-~-~-~~~~~~l~~~~l~~~~~~~~-----------~~LS~g-------------~~~~lilD 145 (525)
T 1tf7_A 98 VDE-----GKLFILDAS-P-D-PEGQEVVGGFDLSALIERIN-----------YAIQKY-------------RARRVSID 145 (525)
T ss_dssp HHT-----TSEEEEECC-C-C-SSCCSCCSSHHHHHHHHHHH-----------HHHHHH-------------TCSEEEEE
T ss_pred hcc-----CcEEEEecC-c-c-cchhhhhcccCHHHHHHHHH-----------HHHHHc-------------CCCEEEEC
Confidence 631 122111100 0 0 00011222233333333322 345665 47899999
Q ss_pred CcCCC-----CCHHHHHHHHHHHHHHhC-CCceec
Q 016798 353 EATSA-----LDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 353 Epts~-----LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|||+. +|+...+.+.+.++++.+ +.|+|.
T Consensus 146 e~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~ 180 (525)
T 1tf7_A 146 SVTSVFQQYDASSVVRRELFRLVARLKQIGATTVM 180 (525)
T ss_dssp CSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99984 688999999999988754 677764
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-18 Score=164.39 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=103.9
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc-eEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (382)
++|+++++.+++|++++|+||||||||||++.|+|...|.+| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999878 77664433 3555666665555554432 2233
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHH-HHHHHHHHHccCCCCEEEEeCcCC---C
Q 016798 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ-RQRLAIARALYQNSSVLILDEATS---A 357 (382)
Q Consensus 282 Ni~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq-~QrialaRall~~~~ililDEpts---~ 357 (382)
|+..+. .++++..+..+ +++...+-+ +.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~~----~~~~~~~~~~~-----~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~ 162 (296)
T 1cr0_A 97 SLKREI----IENGKFDQWFD-----ELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSA 162 (296)
T ss_dssp HHHHHH----HHHTHHHHHHH-----HHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----
T ss_pred ccccCC----CCHHHHHHHHH-----HHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCC
Confidence 443221 11222222221 122222211 222335688998 67777 999999999999999999 4
Q ss_pred ---CCH-HHHHHHHHHHHHHhC--CCceec
Q 016798 358 ---LDS-RSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 358 ---LD~-~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+|. .....+.+.|+++.+ +.|+|.
T Consensus 163 ~~~~d~~~~~~~i~~~L~~la~~~~~~vi~ 192 (296)
T 1cr0_A 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVV 192 (296)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 454 555778888887753 667763
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-18 Score=169.05 Aligned_cols=134 Identities=23% Similarity=0.212 Sum_probs=101.7
Q ss_pred cccee-eEEeeCCCEEEEECCCCCcHHHHHHHHhhCC--CCCC----ce-EEEcCEeCCCCCHHHHhcceEEecCCCccc
Q 016798 204 VLDQL-NLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLS----GC-ILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (382)
Q Consensus 204 ~l~~i-sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~--~~~~----G~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 275 (382)
.|+.+ ++.|++|++++|+||||||||||++.+++.+ +|++ |. |++++.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 56665 6899999999999999999999999999998 6666 68 899987641 245688999999998
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc-------CCCCE
Q 016798 276 SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY-------QNSSV 348 (382)
Q Consensus 276 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall-------~~~~i 348 (382)
..++.||+.+... .+ |.+|+|++.++++++ .+|++
T Consensus 193 ~~~v~~ni~~~~~---~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~l 234 (349)
T 1pzn_A 193 PDEVLKHIYVARA---FN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKL 234 (349)
T ss_dssp HHHHGGGEEEEEC---CS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEE
T ss_pred HHHHhhCEEEEec---CC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCE
Confidence 8899999987542 11 234555566666655 78999
Q ss_pred EEEeCcCCCCCHHH------------HHHHHHHHHHHh--CCCceec
Q 016798 349 LILDEATSALDSRS------------ELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 349 lilDEpts~LD~~~------------~~~i~~~l~~~~--~~~TvI~ 381 (382)
+|+||||+.+|++. ..++...|+++. .+.|+|.
T Consensus 235 lIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii 281 (349)
T 1pzn_A 235 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFV 281 (349)
T ss_dssp EEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 99999999999863 244555555543 2667663
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-18 Score=168.37 Aligned_cols=169 Identities=15% Similarity=0.210 Sum_probs=108.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCE--EEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGET--VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~--~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 264 (382)
.+++++ +++|++ .+ |+++||++++|++ +||+||||||||||+++|+|+. ++|.++...+....++.
T Consensus 16 ~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred eEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 455566 788864 34 9999999999999 9999999999999999999994 34545444333344668
Q ss_pred eEEecCCCccc-cccHHHHHcCCCCCCCCCHHH----HHHHHHHcChHHHHHhC-------CCCcccc-------cCCCC
Q 016798 265 VGLVSQDITLF-SGTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTL-------PQGYNTH-------IGPRG 325 (382)
Q Consensus 265 i~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~l-------p~Gldt~-------vge~G 325 (382)
++|++|++.++ ..|+.||+.++.. .+.+. +.+.++. .+.+++... +..-|+. |-+.+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~---~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQ---INKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC----CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred EEEEeecCccccccchhhhhhhhhc---cccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 99999999987 4599999998863 22221 1111111 122233221 2222332 12344
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHH-Hh
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR-LL 374 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~-~~ 374 (382)
..|+-.+ +.++++|..+++|+++|+||..|.+.....+.+.+++ +.
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~ 206 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV 206 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH
Confidence 5677665 7899999999999999999999998877788888876 44
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-18 Score=162.56 Aligned_cols=126 Identities=21% Similarity=0.219 Sum_probs=88.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC----HHHH--hcceEEecCCCccccc-cHHHHHcCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSL--RRHVGLVSQDITLFSG-TVAENIGYR 286 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~lf~~-ti~eNi~~~ 286 (382)
+|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..+++++|++.+++. |++||+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999986543 1223 4579999999988765 888988532
Q ss_pred CCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC--EEEEeCcCCCCC
Q 016798 287 DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATSALD 359 (382)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~--ililDEpts~LD 359 (382)
.. + +.+..+-..+...+. ....++..++||.++|||+..+|+ ++.|| |+++.|
T Consensus 181 ~~-------------~--~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~ 235 (304)
T 1rj9_A 181 KA-------------R--GYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN 235 (304)
T ss_dssp HH-------------H--TCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH
T ss_pred Hh-------------C--CCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH
Confidence 10 0 000001011111110 112345667999999999999999 55567 555544
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-17 Score=170.06 Aligned_cols=56 Identities=21% Similarity=0.375 Sum_probs=51.9
Q ss_pred CCC-ChHHHHHHHHHHHccCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 326 SSL-SGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 326 ~~l-SgGq~QrialaRall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
..| |||||||++||||++.+| ++|||||||++||+.+...|.+.|+++.+++|+|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~ 453 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLV 453 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 456 999999999999999999 99999999999999999999999999877778764
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-20 Score=166.99 Aligned_cols=134 Identities=21% Similarity=0.206 Sum_probs=102.9
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCC----C
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYR----D 287 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~----~ 287 (382)
.++|++++|+||||||||||+++|+|+++|. | ..+++|++|.+.++.+..+|+... .
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999876 4 257888898888888877776421 1
Q ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCCCC--cccccCCCCCCCChHHHHHHHHH-HHccCCCCEEEEeCcC---------
Q 016798 288 LMTKIDMERVEHTARTANADEFVRTLPQG--YNTHIGPRGSSLSGGQRQRLAIA-RALYQNSSVLILDEAT--------- 355 (382)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~G--ldt~vge~G~~lSgGq~Qriala-Rall~~~~ililDEpt--------- 355 (382)
+. ..+.+.+ .+++..++.| +++++.+.+..+|+||+||+++| |+++.++.++++|||.
T Consensus 80 ~~-~~~~~~~---------~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d 149 (208)
T 3c8u_A 80 PE-TFDFEGF---------QRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWD 149 (208)
T ss_dssp GG-GBCHHHH---------HHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCS
T ss_pred Cc-hhhHHHH---------HHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcC
Confidence 11 1122222 2334444444 78889999999999999999999 9999999999999985
Q ss_pred --CCCCHHHHHHHHHHHHHHh
Q 016798 356 --SALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 356 --s~LD~~~~~~i~~~l~~~~ 374 (382)
.-+|...+..+.+.+++..
T Consensus 150 ~~i~vd~~~~~~~~R~~~R~~ 170 (208)
T 3c8u_A 150 VSIRLEVPMADLEARLVQRWL 170 (208)
T ss_dssp EEEEECCCHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHH
Confidence 3467778877888777653
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=152.65 Aligned_cols=57 Identities=37% Similarity=0.377 Sum_probs=50.2
Q ss_pred CCCCChHHHH------HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 325 GSSLSGGQRQ------RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 325 G~~lSgGq~Q------rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
...||||||| |+++|||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~ 309 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4679999999 67888999999999999999999999999999999988653 566653
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.8e-17 Score=165.01 Aligned_cols=131 Identities=14% Similarity=0.051 Sum_probs=96.9
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHc-CCC
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG-YRD 287 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~-~~~ 287 (382)
+..+++|++++|+|+||||||||++.++|...|. |. +.+.+++|++. .++.+|.. ++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence 3489999999999999999999999999999875 43 11456677662 24555542 22
Q ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHH-----H
Q 016798 288 LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR-----S 362 (382)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~-----~ 362 (382)
.+.++ +.. .|+..........|||||+||+++||++..+|+++|+| ||++||.. .
T Consensus 333 ----~~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 333 ----MDFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp ----CCHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred ----CCHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 22222 111 13333334455789999999999999999999999999 99999999 8
Q ss_pred HHHHHHHHHHHh-CCCceec
Q 016798 363 ELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 363 ~~~i~~~l~~~~-~~~TvI~ 381 (382)
.+.+.+.++.++ .+.|+|.
T Consensus 393 ~~~i~~ll~~l~~~g~tvil 412 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLF 412 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 888888888775 3667763
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-16 Score=155.01 Aligned_cols=126 Identities=21% Similarity=0.250 Sum_probs=88.7
Q ss_pred EeEEEEeCCCCCCccceeeE-------EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCC-CceEEEcCEeCCCCCHHHHh
Q 016798 191 CNISFKYADNMPLVLDQLNL-------HIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl-------~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r 262 (382)
.+++++|.....+.|+++.+ .+.+|+.++|+||||||||||+++|+|+++|+ +|.|...+.++ ++. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 57788886655677888887 78899999999999999999999999999987 56665443333 222 23
Q ss_pred cceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
...++++|.+.-.. ..+..+ +|||||
T Consensus 168 ~~~~~v~q~~~~~~--------------~~~~~~----------------------------------------~La~aL 193 (356)
T 3jvv_A 168 SKKCLVNQREVHRD--------------TLGFSE----------------------------------------ALRSAL 193 (356)
T ss_dssp CSSSEEEEEEBTTT--------------BSCHHH----------------------------------------HHHHHT
T ss_pred ccccceeeeeeccc--------------cCCHHH----------------------------------------HHHHHh
Confidence 34456666432110 011111 999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
..+|+++++|||| |.++...+.++ ...++|++
T Consensus 194 ~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl 225 (356)
T 3jvv_A 194 REDPDIILVGEMR---DLETIRLALTA---AETGHLVF 225 (356)
T ss_dssp TSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEE
T ss_pred hhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEE
Confidence 9999999999999 77765444443 34577776
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-17 Score=149.81 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=88.0
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-------CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHH
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDP-------LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi 283 (382)
.|++|++++|+||||||||||+++|+|.+.| ..|.+.+++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 444778877542 11 2357788888888878999998
Q ss_pred cCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc--cCCCCEEEEeCcCCCCCHH
Q 016798 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEATSALDSR 361 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal--l~~~~ililDEpts~LD~~ 361 (382)
.+.... +..+.....+. +.+.+. +++ ..+|+++++||||+.+|++
T Consensus 95 ~~~~~~---~~~~~~~~~~~--~~~~~~----------------------------~~~~~~~~~~llilDe~~~~l~~~ 141 (231)
T 4a74_A 95 YVARAF---NSNHQMLLVQQ--AEDKIK----------------------------ELLNTDRPVKLLIVDSLTSHFRSE 141 (231)
T ss_dssp EEEECC---SHHHHHHHHHH--HHHHHH----------------------------HHTTSSSCEEEEEEETSSHHHHHH
T ss_pred EEEecC---ChHHHHHHHHH--HHHHHH----------------------------HhcccCCceeEEEECChHHHhccc
Confidence 775431 22111111111 111111 111 3589999999999999984
Q ss_pred -------HH-----HHHHHHHHHHh--CCCceec
Q 016798 362 -------SE-----LLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 362 -------~~-----~~i~~~l~~~~--~~~TvI~ 381 (382)
.+ ..+.+.|.++. .+.|+|.
T Consensus 142 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~ 175 (231)
T 4a74_A 142 YIGRGALAERQQKLAKHLADLHRLANLYDIAVFV 175 (231)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 22 25666666653 2677763
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-16 Score=155.59 Aligned_cols=54 Identities=28% Similarity=0.311 Sum_probs=48.7
Q ss_pred CCChHHHHHHHHHHHcc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCcee
Q 016798 327 SLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 327 ~lSgGq~QrialaRall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI 380 (382)
.||||||||++|||+|+ ++|+++||||||++||+.+...+.+.|+++.+ +.++|
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~i 391 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 391 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEE
Confidence 49999999999999999 68999999999999999999999999998754 45555
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-16 Score=171.65 Aligned_cols=145 Identities=14% Similarity=0.150 Sum_probs=92.9
Q ss_pred CcEEEEeEEEEe-----CCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH
Q 016798 186 GDVKFCNISFKY-----ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 186 ~~i~~~~v~f~y-----~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 260 (382)
+.|.+++...-. +.++..+++|+||++++|++++|+|||||||||++++++++.-..
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------ 700 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------ 700 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh------------------
Confidence 357787754322 112357999999999999999999999999999999997642110
Q ss_pred HhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+.-.++|++..-+ ++.+++. ...++.+.+. .+-..+|+|++|+..++|
T Consensus 701 --q~g~~vpa~~~~i--~~~d~i~-----------------~~ig~~d~l~-----------~~~stfs~em~~~~~il~ 748 (918)
T 3thx_B 701 --QIGSYVPAEEATI--GIVDGIF-----------------TRMGAADNIY-----------KGRSTFMEELTDTAEIIR 748 (918)
T ss_dssp --HHTCCBSSSEEEE--ECCSEEE-----------------EEC---------------------CCHHHHHHHHHHHHH
T ss_pred --hcCccccchhhhh--hHHHHHH-----------------HhCChHHHHH-----------HhHHHhhHHHHHHHHHHH
Confidence 0011223222100 0011110 0011111111 112578999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHh--CCCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVR-QAVDRLL--GHHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~-~~l~~~~--~~~TvI~ 381 (382)
+ +.+|+++||||||+|+|+.....+. ..++.+. .++|+|+
T Consensus 749 ~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~ 791 (918)
T 3thx_B 749 K-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLF 791 (918)
T ss_dssp H-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred h-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 9 8999999999999999999888887 5555553 3677764
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=161.83 Aligned_cols=135 Identities=15% Similarity=0.161 Sum_probs=89.4
Q ss_pred CcEEEEeEEEEeCC---CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHH--------hhCCCCCCceEEEcCEeCC
Q 016798 186 GDVKFCNISFKYAD---NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL--------LRLYDPLSGCILVDDHDVQ 254 (382)
Q Consensus 186 ~~i~~~~v~f~y~~---~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll--------~g~~~~~~G~i~~~g~~~~ 254 (382)
+.|.+++..+-+-. +...+++|++|++++|++++|+|||||||||++|++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 45888886543322 124689999999999999999999999999999999 55554443221
Q ss_pred CCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHH
Q 016798 255 NIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (382)
Q Consensus 255 ~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Q 334 (382)
++.+. .+|. .++ +.+.+ ...+|+|+++
T Consensus 702 ----------~~~~d---~i~~-------~ig-------------------~~d~l--------------~~~lStf~~e 728 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG-------------------AGDSQ--------------LKGVSTFMAE 728 (934)
T ss_dssp ----------EECCS---EEEE-------ECC------------------------------------------CHHHHH
T ss_pred ----------chHHH---HHHH-------hcC-------------------chhhH--------------HHhHhhhHHH
Confidence 11100 0111 011 11111 1357888888
Q ss_pred HHHHHHHc--cCCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHh--CCCceec
Q 016798 335 RLAIARAL--YQNSSVLILDEATSALDSRSELLV-RQAVDRLL--GHHTVRE 381 (382)
Q Consensus 335 rialaRal--l~~~~ililDEpts~LD~~~~~~i-~~~l~~~~--~~~TvI~ 381 (382)
+..+|+++ +.+|+++||||||+|+|+.....+ ...++.+. .++|+|+
T Consensus 729 ~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~ 780 (934)
T 3thx_A 729 MLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF 780 (934)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 88888888 999999999999999999888777 44555554 2667664
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-17 Score=147.91 Aligned_cols=139 Identities=17% Similarity=0.093 Sum_probs=90.5
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT 290 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~ 290 (382)
.+++|++++|+|||||||||++++|+|. |..|.|.++|.++.... ..++.++|++|++. ...|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 68899999987653221 11345788888765 4568888874321
Q ss_pred CCCHHHHHHHHHHcChHHHHHhCC--CCcccc--cCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHH
Q 016798 291 KIDMERVEHTARTANADEFVRTLP--QGYNTH--IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366 (382)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~i~~lp--~Gldt~--vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i 366 (382)
.. ... .+....++... .+++.. .+.....+|+|++||+++||++.++|+++ +|++..+.+
T Consensus 77 ----~~---~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~ 140 (191)
T 1zp6_A 77 ----GR---YAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADL 140 (191)
T ss_dssp ----HH---HHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHH
T ss_pred ----HH---Hhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHH
Confidence 00 000 00000000000 011100 12234579999999999999999999876 577766666
Q ss_pred HHHHHHH
Q 016798 367 RQAVDRL 373 (382)
Q Consensus 367 ~~~l~~~ 373 (382)
.+.++.+
T Consensus 141 ~~~~~~l 147 (191)
T 1zp6_A 141 HSQFADL 147 (191)
T ss_dssp HHHTTCC
T ss_pred HHHHhcc
Confidence 6666543
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.8e-19 Score=169.72 Aligned_cols=179 Identities=14% Similarity=0.052 Sum_probs=116.1
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH----HHHhcce
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSLRRHV 265 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~r~~i 265 (382)
+++++++|.. ..+|+++||++++|++++|+|+||||||||++.|+|++.|++|+|.+.|.++..... ...|.++
T Consensus 32 ~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i 109 (337)
T 2qm8_A 32 SRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRM 109 (337)
T ss_dssp CSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGS
T ss_pred eCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhh
Confidence 3466667743 358999999999999999999999999999999999999999999999998754321 2346789
Q ss_pred EEecCCCcccc----------cc---HHHHHc-C---CCC-------CCCCCHHHHHHHHHH-------------cChHH
Q 016798 266 GLVSQDITLFS----------GT---VAENIG-Y---RDL-------MTKIDMERVEHTART-------------ANADE 308 (382)
Q Consensus 266 ~~v~Q~~~lf~----------~t---i~eNi~-~---~~~-------~~~~~~~~~~~~~~~-------------~~l~~ 308 (382)
++++|++.+|. || ++|.+. + +.+ .-..++..+.+.++. ..+.+
T Consensus 110 ~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~ 189 (337)
T 2qm8_A 110 ARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKK 189 (337)
T ss_dssp TTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCT
T ss_pred eeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHH
Confidence 99999999885 21 222220 0 000 000011111100000 00000
Q ss_pred HHHhCCCCcc-cccC-CCCCCCChHHHHHHHHHHHccC------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 309 FVRTLPQGYN-THIG-PRGSSLSGGQRQRLAIARALYQ------NSSVLILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 309 ~i~~lp~Gld-t~vg-e~G~~lSgGq~QrialaRall~------~~~ililDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
.+...|.-+- +.+. .....+|+|++|+++.|++++. +|+++. ||++|......+.+.|.+..
T Consensus 190 ~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 190 GIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp THHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0111121100 1111 0123578999999999999987 688876 99999999989888887754
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-17 Score=159.63 Aligned_cols=137 Identities=21% Similarity=0.195 Sum_probs=102.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC--------CCCCceEEEcCEeCCCCC---------------HHHHhcceEEe---c
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY--------DPLSGCILVDDHDVQNIR---------------LDSLRRHVGLV---S 269 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~--------~~~~G~i~~~g~~~~~~~---------------~~~~r~~i~~v---~ 269 (382)
++++|+|+||||||||++.|+|++ .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999987653 34567788888 6
Q ss_pred CCCcc-ccccHHHHHcCCCCCCCCCHHHHHHHH-------HH---------cChHHHHHhCCCCcccccCCCCCCCChHH
Q 016798 270 QDITL-FSGTVAENIGYRDLMTKIDMERVEHTA-------RT---------ANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (382)
Q Consensus 270 Q~~~l-f~~ti~eNi~~~~~~~~~~~~~~~~~~-------~~---------~~l~~~i~~lp~Gldt~vge~G~~lSgGq 332 (382)
|++.+ |+.++.||..++.+ ..+...+ +. +++.++...+ .++|+||
T Consensus 85 q~~~~~~~~~v~E~~~l~~p------~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------------~~ls~g~ 146 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP------GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------------NQFTIAQ 146 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH------HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------------HHCHHHH
T ss_pred hcCCCCCCEEEEeCCCCCCH------HHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------------hhchHHH
Confidence 88774 67899999987653 2221111 11 1121222221 1589999
Q ss_pred HHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 333 ~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+||...+++++.+|+++ ||| ..+.+.++++.++.|++.
T Consensus 147 ~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~ 184 (318)
T 1nij_A 147 SQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYT 184 (318)
T ss_dssp HHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEE
T ss_pred HHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEE
Confidence 99999999999999987 888 677888888777777763
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-16 Score=144.28 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=84.4
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC--CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cH----HHH
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TV----AEN 282 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti----~eN 282 (382)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+... ..++.++|++|++..|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 35789999999999999999999999999986 68999998876543 235679999999998865 55 577
Q ss_pred HcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHH
Q 016798 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362 (382)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~ 362 (382)
+.+.......+.+++. .++..++++||| ||+.+
T Consensus 87 ~~~~~~~yg~~~~~v~------------------------------------------~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 87 AEVFGNYYGTSREAIE------------------------------------------QVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EEETTEEEEEEHHHHH------------------------------------------HHHTTTCEEEEE-----CCHHH
T ss_pred HHHHhccCCCCHHHHH------------------------------------------HHHhcCCeEEEE-----ECHHH
Confidence 6543211111222222 222336999999 99999
Q ss_pred HHHHHHHHHHHhCCCceec
Q 016798 363 ELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 363 ~~~i~~~l~~~~~~~TvI~ 381 (382)
..++.+.+. ++.|+++
T Consensus 120 ~~~i~~~l~---~~~tI~i 135 (219)
T 1s96_A 120 AQQIRQKMP---HARSIFI 135 (219)
T ss_dssp HHHHHHHCT---TCEEEEE
T ss_pred HHHHHHHcc---CCEEEEE
Confidence 999988775 4566653
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=143.52 Aligned_cols=143 Identities=16% Similarity=0.142 Sum_probs=95.3
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHc-CCCCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG-YRDLM 289 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~-~~~~~ 289 (382)
.+++|++++|+||||||||||++.+++... .|.+. .|.+... +..+.|++.+... ..+.+++. ++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh--
Confidence 478999999999999999999999998764 46663 3443321 3457787766543 22322321 221
Q ss_pred CCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCC--CCCHHHH---H
Q 016798 290 TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS--ALDSRSE---L 364 (382)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts--~LD~~~~---~ 364 (382)
..+.......++... +....+.....||+||+|++ |+++++|+++|+||||+ ++|..+. .
T Consensus 93 -~~~~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 93 -HLSAEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp -TSCHHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred -hcChhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 123333333333332 22233455678999998865 68889999999999999 9998544 7
Q ss_pred HHHHHHHHHh--CCCceec
Q 016798 365 LVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 365 ~i~~~l~~~~--~~~TvI~ 381 (382)
.+.+.|+++. .++|+|.
T Consensus 158 ~~~~~L~~l~~~~g~tvi~ 176 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVF 176 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 7778887774 3677764
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.3e-17 Score=148.31 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=96.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---hCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHHcCC---
Q 016798 214 AGETVALIGPSGGGKSTLAKLLL---RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYR--- 286 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~---g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~--- 286 (382)
++++++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...+..++|++.+++. ++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999998876532 1334456677788776654 888888531
Q ss_pred ---CC----CCCCCHHHHHHHHHHcChH--HHHHhCCC-CcccccCCCCCCCChHHHHHHHHHHHc-cCCCCEEEEe---
Q 016798 287 ---DL----MTKIDMERVEHTARTANAD--EFVRTLPQ-GYNTHIGPRGSSLSGGQRQRLAIARAL-YQNSSVLILD--- 352 (382)
Q Consensus 287 ---~~----~~~~~~~~~~~~~~~~~l~--~~i~~lp~-Gldt~vge~G~~lSgGq~QrialaRal-l~~~~ililD--- 352 (382)
.. ....+.++..........+ -+++.-|+ .++-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 00 0001222221111101100 00000000 011111223457888 66 888 9999999999
Q ss_pred -CcCCCCCHHHHHHHHHHHHHHh
Q 016798 353 -EATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 353 -Epts~LD~~~~~~i~~~l~~~~ 374 (382)
|||+++|..++..+.+.++++.
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999988888887653
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-16 Score=138.08 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=71.5
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecC
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ 270 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q 270 (382)
++++++|++ ..+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++|
T Consensus 11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 345666753 35899999999999999999999999999999999999 9999999999887421 1112 27999
Q ss_pred CCccccccHHHHHc
Q 016798 271 DITLFSGTVAENIG 284 (382)
Q Consensus 271 ~~~lf~~ti~eNi~ 284 (382)
++.+|.-|+.||+.
T Consensus 83 ~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 83 HFDLYRLADPEELE 96 (158)
T ss_dssp EEECTTCSCTTHHH
T ss_pred ccccccCCcHHHHH
Confidence 99999779999994
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.9e-18 Score=168.67 Aligned_cols=130 Identities=20% Similarity=0.197 Sum_probs=91.1
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC----CHHHHhcceEEec---------C
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLDSLRRHVGLVS---------Q 270 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~---------Q 270 (382)
+|+++ + .++|++++|+|||||||||++++|+|+++|++|+|.+.+.++... +...+++++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45666 4 378999999999999999999999999999999999998877321 1123345566654 9
Q ss_pred CCccc--c-----ccHHHHHcCCCC-------CCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 016798 271 DITLF--S-----GTVAENIGYRDL-------MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (382)
Q Consensus 271 ~~~lf--~-----~ti~eNi~~~~~-------~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri 336 (382)
+|.++ . .|+++|+.++.. .+..+..+....+...++.++. ....|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 99863 2 388898864311 0111223333344444443332 235899999999
Q ss_pred HHHHHccCCCCEEE
Q 016798 337 AIARALYQNSSVLI 350 (382)
Q Consensus 337 alaRall~~~~ili 350 (382)
|||+++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999875
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-15 Score=126.18 Aligned_cols=66 Identities=30% Similarity=0.284 Sum_probs=56.3
Q ss_pred Cccccc-----CCCCCCCChHHHHHHHHH------HHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 316 GYNTHI-----GPRGSSLSGGQRQRLAIA------RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 316 Gldt~v-----ge~G~~lSgGq~Qriala------Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
++++.+ .....+||||||||++|| ||++.+|+++||||||++||+.+...+.+.++++.+ ++|+|+
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 118 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 118 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEE
Confidence 566654 234679999999999876 999999999999999999999999999999998753 677764
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-14 Score=155.26 Aligned_cols=140 Identities=17% Similarity=0.199 Sum_probs=88.0
Q ss_pred CcEEEEeEEEEeCC-----CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEEcCEeCCCCCHH
Q 016798 186 GDVKFCNISFKYAD-----NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 186 ~~i~~~~v~f~y~~-----~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~~g~~~~~~~~~ 259 (382)
+.|.+++.. +|- ++..+++|+||+ ++|++++|+|||||||||++|+++|+..+ ..|. .+ +.
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~v---pa- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YV---PA- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CB---SS-
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------cc---ch-
Confidence 357777753 331 234689999999 99999999999999999999999997532 2231 11 10
Q ss_pred HHhcceEEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
-+..+++++| +|.. ++.||+..+ + ..+|++++ +++.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~------------------------------~--------stf~~e~~-~~~~ 679 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG------------------------------R--------STFMVEMT-ETAN 679 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-------------------------------------------------CHHHHH-HHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh------------------------------h--------hhhhHHHH-HHHH
Confidence 1234666655 4432 444444211 0 23566665 4555
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHhC--CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLV-RQAVDRLLG--HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i-~~~l~~~~~--~~TvI~ 381 (382)
+...+.+|+++||||||+|+|+.....+ .+.++.+.+ ++|+|+
T Consensus 680 il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~ 725 (800)
T 1wb9_A 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLF 725 (800)
T ss_dssp HHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEE
Confidence 5556899999999999999998655554 556666543 566663
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-15 Score=147.21 Aligned_cols=123 Identities=20% Similarity=0.135 Sum_probs=82.4
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-CCCceEEEc-CEeCCCCCHHHHhcceEEecCCCccccc-cH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVD-DHDVQNIRLDSLRRHVGLVSQDITLFSG-TV 279 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-~~~G~i~~~-g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 279 (382)
.-++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |.+.. ...+..+++++|++.+++. |+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357888875 4899999999999999999999999999 999999987 76542 2345679999999998866 89
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 280 AENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 280 ~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
+|+-.. ..+.+++.+. +.++++.+ |+.......-.++| ||+||++||++++
T Consensus 279 ~e~~l~-----~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REFGLW-----HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTCCCC-----CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHhhhc-----CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 986321 2344443221 22333332 44444444557899 9999999999864
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-15 Score=134.51 Aligned_cols=143 Identities=16% Similarity=0.112 Sum_probs=96.8
Q ss_pred CccceeeE-EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc---ceEEecCCCcccccc
Q 016798 203 LVLDQLNL-HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR---HVGLVSQDITLFSGT 278 (382)
Q Consensus 203 ~~l~~isl-~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~---~i~~v~Q~~~lf~~t 278 (382)
+.|+++.. .+++|++++|+||||||||||++.+++...+.+|.|.+.+.+. +...+++ .+++.+|+..
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~----- 81 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI----- 81 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB-----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh-----
Confidence 47888888 8999999999999999999999999999888888888865443 3333322 2333333221
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC--EEEEeCcCC
Q 016798 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATS 356 (382)
Q Consensus 279 i~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~--ililDEpts 356 (382)
.+++..... ... . .. +. .+- ...|.+|.++...+.+...+|+ ++|+||||+
T Consensus 82 -~~~~~~~~~---~~~-~-------------~~--~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 82 -EKKLIIIDA---LMK-E-------------KE--DQ----WSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp -TTTEEEEEC---CC--------------------CT----TBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred -hCCEEEEec---ccc-c-------------cC--ce----eee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 011111100 000 0 00 00 011 2348999988888877778999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHh--CCCcee
Q 016798 357 AL--DSRSELLVRQAVDRLL--GHHTVR 380 (382)
Q Consensus 357 ~L--D~~~~~~i~~~l~~~~--~~~TvI 380 (382)
.+ |+.....+.+.|+++. .+.|+|
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi 162 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIY 162 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEE
Confidence 88 9988888999988874 356665
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-15 Score=160.23 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=86.9
Q ss_pred HHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHH
Q 016798 231 LAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV 310 (382)
Q Consensus 231 l~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i 310 (382)
+..|..+.+.|..|+|.++|.++.++....+.+.++++.+ +.+..... .-.....+..+. ..+++
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~------------~~l~~~~~-~~~~~~~~~~~~--~~~~L 448 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKN------------LNLTERER-EIVGELLKEIEK--RLEFL 448 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHS------------CCCCTTTT-TTHHHHHHHHHH--HHHHH
T ss_pred chhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHh------------ccCcHHHH-HHHHhhHHHHHH--HHHHH
Confidence 3445567788999999999999865333233333333221 11111000 001111111111 12334
Q ss_pred HhCCCCcccc-cCCCCCCCChHHHHHHHHHHHccCCCC--EEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 311 RTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 311 ~~lp~Gldt~-vge~G~~lSgGq~QrialaRall~~~~--ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
..+ |++.. ......+||||||||++|||||..+|+ +|||||||++||+.....+.+.|+++.+ ++|+|.
T Consensus 449 ~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 449 VDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 443 55432 456678999999999999999999887 9999999999999999999999999864 678764
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-14 Score=144.82 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=68.9
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC----HHH--HhcceEEecCCCccc-cc
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDS--LRRHVGLVSQDITLF-SG 277 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~--~r~~i~~v~Q~~~lf-~~ 277 (382)
-+++||++++|++++|+|+||||||||+++|+|++.|++|+|.++|.|..... +.. .|+.|+|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999887765321 122 367899999998866 45
Q ss_pred cHHHHHcCC
Q 016798 278 TVAENIGYR 286 (382)
Q Consensus 278 ti~eNi~~~ 286 (382)
|+++|+.++
T Consensus 363 tV~e~l~~a 371 (503)
T 2yhs_A 363 VIFDAIQAA 371 (503)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 899999654
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.2e-15 Score=157.18 Aligned_cols=146 Identities=17% Similarity=0.206 Sum_probs=100.8
Q ss_pred CCCCcHHHHHHHHhhC---------CCCCCceEEEcCEeCCC---CCHHHHhcceEEecCCCccccccHHHHHcCCCCCC
Q 016798 223 PSGGGKSTLAKLLLRL---------YDPLSGCILVDDHDVQN---IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT 290 (382)
Q Consensus 223 ~sGsGKSTl~~ll~g~---------~~~~~G~i~~~g~~~~~---~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~ 290 (382)
.|..||+++.+.+... |.|..|+|.++|.++.+ ++..++...+.-++|++.... + +...+..
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~--- 343 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRP--- 343 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCS---
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcch---
Confidence 4667899998887663 34577999999999987 555555555555555554222 2 1222221
Q ss_pred CCCHHHHH-----HHHHHcChHHHHHhCCCCcccc-cCCCCCCCChHHHHHHHHHHHccCCC--CEEEEeCcCCCCCHHH
Q 016798 291 KIDMERVE-----HTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRS 362 (382)
Q Consensus 291 ~~~~~~~~-----~~~~~~~l~~~i~~lp~Gldt~-vge~G~~lSgGq~QrialaRall~~~--~ililDEpts~LD~~~ 362 (382)
...++. +..++. +.+..+ |++.. ++....+|||||||||+|||+|..+| ++|||||||++||+..
T Consensus 344 --~~~~i~~~i~~ei~~rl---~~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~ 416 (842)
T 2vf7_A 344 --EQAIALQRMAADLVKRL---DVLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPAD 416 (842)
T ss_dssp --SHHHHHHHHHHHHHHHH---HHHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGG
T ss_pred --hhHHHHHHHHHHHHHHH---HHHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHH
Confidence 122221 122221 134443 55543 56777899999999999999999999 4999999999999999
Q ss_pred HHHHHHHHHHHhC-CCceec
Q 016798 363 ELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 363 ~~~i~~~l~~~~~-~~TvI~ 381 (382)
.+.+.+.|+++.. +.|+|.
T Consensus 417 ~~~L~~~l~~L~~~G~TVIv 436 (842)
T 2vf7_A 417 TEALLSALENLKRGGNSLFV 436 (842)
T ss_dssp HHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEE
Confidence 9999999998865 677763
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.6e-15 Score=139.55 Aligned_cols=117 Identities=13% Similarity=0.038 Sum_probs=82.5
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEE---cCEeCCCCCHHHHh-cceEEecCCCccc------cccH
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV---DDHDVQNIRLDSLR-RHVGLVSQDITLF------SGTV 279 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~---~g~~~~~~~~~~~r-~~i~~v~Q~~~lf------~~ti 279 (382)
+++.+|++++++||||||||||+++|+ +.+|++|+|.+ +|.++..... ..+ +.++|++|+|.+. ..|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 355679999999999999999999999 99999999999 9988765432 222 3699999999653 3478
Q ss_pred HHHH--cCC---------C--CCCCCCHHHHHHHHHHcChHH-HHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 280 AENI--GYR---------D--LMTKIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 280 ~eNi--~~~---------~--~~~~~~~~~~~~~~~~~~l~~-~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
||+ .|+ . .......+.+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 443 1 011223457888888888865 444443 578998889999987
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-16 Score=148.58 Aligned_cols=143 Identities=20% Similarity=0.178 Sum_probs=103.5
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCC-cccc-ccHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI-TLFS-GTVA 280 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-~lf~-~ti~ 280 (382)
.+++++++++++| ++|+||||||||||+++|+|.+.+ |.|.++|.++.+......++.+++++|++ ..++ -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999977 79999999887665566677899999986 3444 3778
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCC----
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS---- 356 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts---- 356 (382)
||+....+.. ...+. . ........+ -..|||||+||..+++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r--~~~~~-~-----~~~~~~~~~-----------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gR 168 (274)
T 2x8a_A 110 DEVDALCPRR--SDRET-G-----ASVRVVNQL-----------LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGR 168 (274)
T ss_dssp ETCTTTCC-----------------CTTHHHHH-----------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTS
T ss_pred ehhhhhhccc--CCCcc-h-----HHHHHHHHH-----------HHhhhcccccCCEEEEeecCChhhC--CHhhcCccc
Confidence 8886533211 11110 0 011112221 2468999999999999999999975 99874
Q ss_pred --------CCCHHHHHHHHHHH
Q 016798 357 --------ALDSRSELLVRQAV 370 (382)
Q Consensus 357 --------~LD~~~~~~i~~~l 370 (382)
--|.+.+..|++.+
T Consensus 169 fd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 169 LDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp SCEEEECCSCCHHHHHHHHHHH
T ss_pred CCeEEEeCCcCHHHHHHHHHHH
Confidence 23666776666654
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=120.63 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=50.5
Q ss_pred CCCCChHHHHHHHHHHHcc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 325 GSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 325 G~~lSgGq~QrialaRall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
...||||||||++|||+++ ++|+++||||||++||+.+...+.+.|+++.++.++|
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~i 121 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFI 121 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEE
Confidence 4689999999999999996 5679999999999999999999999999987766655
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-13 Score=123.43 Aligned_cols=130 Identities=17% Similarity=0.124 Sum_probs=78.8
Q ss_pred CccceeeE-EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHH
Q 016798 203 LVLDQLNL-HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (382)
Q Consensus 203 ~~l~~isl-~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (382)
+.|+++.. .+++|++++|+||||||||||++.+++ .+..+.++++..+ ..+... +++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~------------------~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPER------------------LVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHH------------------HHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHH------------------HHH
Confidence 35677765 799999999999999999999999999 3333333333221 111221 222
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChH--HHHHHHHHHHccCC-CCEEEEeCcCCCC
Q 016798 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG--QRQRLAIARALYQN-SSVLILDEATSAL 358 (382)
Q Consensus 282 Ni~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgG--q~QrialaRall~~-~~ililDEpts~L 358 (382)
..... ..+.++ +.+.+. + ...|++ |+|+++.+|+++++ |+++|+||||+.+
T Consensus 65 ~~~~~----~~~~~~------------~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 65 MAETR----GLNPEE------------ALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHTT----TCCHHH------------HHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHhc----CCChHH------------HhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 11100 112222 111110 1 123344 46789999999986 9999999999999
Q ss_pred CHHHH--------HHHHHHHHHHhC--CCcee
Q 016798 359 DSRSE--------LLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 359 D~~~~--------~~i~~~l~~~~~--~~TvI 380 (382)
|...+ ..+.+.|+++.+ +.|+|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi 150 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVI 150 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 97432 345555666543 56665
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-15 Score=145.63 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=74.6
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEe-------------------eCCCEEEEECCCCCcHHHHHHHHhhCCC--CCCc
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHI-------------------RAGETVALIGPSGGGKSTLAKLLLRLYD--PLSG 244 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i-------------------~~G~~~aivG~sGsGKSTl~~ll~g~~~--~~~G 244 (382)
+.|+++||++.|. ++++++|+.+ ++|+++||+||||||||||+++|+|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 4688999999993 5899999988 8999999999999999999999999998 9999
Q ss_pred eEEE---cCEeCCCCCHHHHhcceEEecCCCcccc-ccHHHHHc
Q 016798 245 CILV---DDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAENIG 284 (382)
Q Consensus 245 ~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi~ 284 (382)
+|.+ ||.... . ..++.++++ |+..++. -|+.+|+.
T Consensus 112 ~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~ 150 (308)
T 1sq5_A 112 RVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVK 150 (308)
T ss_dssp CEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHH
T ss_pred eEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHH
Confidence 9999 887742 2 345678888 7766543 37777763
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-13 Score=132.41 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=84.6
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHH----HHhc--ceEEecCCCccccc-cHHHHH
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD----SLRR--HVGLVSQDITLFSG-TVAENI 283 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~----~~r~--~i~~v~Q~~~lf~~-ti~eNi 283 (382)
..++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+...... .+++ .+.+++|++.+++. |++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998765533 2333 35699999988865 899998
Q ss_pred cCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCC
Q 016798 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts 356 (382)
.++.. .... .+ -+||. |... .-..=.++.-.++|++..++++++||.+|.
T Consensus 205 ~~~~~-------------~~~d---~v-----liDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~ 254 (328)
T 3e70_C 205 QHAKA-------------RGID---VV-----LIDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG 254 (328)
T ss_dssp HHHHH-------------HTCS---EE-----EEEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred HHHHh-------------ccch---hh-----HHhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH
Confidence 54310 0000 00 01221 1100 001122344458999999999999996654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-13 Score=130.40 Aligned_cols=130 Identities=18% Similarity=0.243 Sum_probs=71.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhh-CCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccc-cccHHHHHcCCCCCCCCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLR-LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKID 293 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~ 293 (382)
..+.|+||+|+||||+++++++ ++.|+.|.+.++|.+..... ..+..+++++|.+++. +.+- .+. .+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~----~~ 105 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD-----MGN----ND 105 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-------------CC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh-----cCC----cc
Confidence 3499999999999999999999 89999999999998765432 2367799999988753 2110 010 11
Q ss_pred HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 294 MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 294 ~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
...+.+.++.+ .... +++..+ .||| +..+|+++|+|||++ ||..+...+.+.+++.
T Consensus 106 ~~~~~~~i~~~-----~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 106 RIVIQELLKEV-----AQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp HHHHHHHHHHH-----TTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHH-----HHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 12233333221 1111 122111 4566 788999999999999 9999999999999987
Q ss_pred hCCCcee
Q 016798 374 LGHHTVR 380 (382)
Q Consensus 374 ~~~~TvI 380 (382)
.++.++|
T Consensus 162 ~~~~~~I 168 (354)
T 1sxj_E 162 SKNIRLI 168 (354)
T ss_dssp TTTEEEE
T ss_pred cCCCEEE
Confidence 6655554
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.8e-13 Score=122.07 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=67.5
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhh--CCCC-----CCceEEEcCEeCCC-CCHHHHhcceEEecCCCccccccHHHH
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLR--LYDP-----LSGCILVDDHDVQN-IRLDSLRRHVGLVSQDITLFSGTVAEN 282 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g--~~~~-----~~G~i~~~g~~~~~-~~~~~~r~~i~~v~Q~~~lf~~ti~eN 282 (382)
-+++|++++|+||||||||||++.+++ ..+| ..|.+++++.+... -....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5655 57788888765211 1122334456655543 4566
Q ss_pred HcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHH
Q 016798 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (382)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~ 361 (382)
+.+..+ .+.++..+.++. +.+.+. -.+|+++++||||+.+|..
T Consensus 93 ~~~~~~---~~~~~~~~~~~~--~~~~~~-------------------------------~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 93 VAYARA---FNTDHQTQLLYQ--ASAMMV-------------------------------ESRYALLIVDSATALYRTD 135 (243)
T ss_dssp EEEEEC---CSHHHHHHHHHH--HHHHHH-------------------------------HSCEEEEEEETSSGGGC--
T ss_pred eEEEec---CCHHHHHHHHHH--HHHHHh-------------------------------cCCceEEEEeCchHHHHHH
Confidence 654322 122332222111 111111 1689999999999999985
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-13 Score=147.97 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=57.4
Q ss_pred Ccccc-cCCCCCCCChHHHHHHHHHHHccCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 316 GYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 316 Gldt~-vge~G~~lSgGq~QrialaRall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
|++.. +.....+|||||||||+||++|..+| ++|||||||++||+.....+.+.|+++.+ +.|+|.
T Consensus 492 GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIv 561 (972)
T 2r6f_A 492 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 561 (972)
T ss_dssp TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 55542 56667899999999999999999985 99999999999999999999999999874 678774
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-13 Score=130.31 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=70.5
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEE---cCEeCCCCCHHHHhcceEEecCCCc-------------
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV---DDHDVQNIRLDSLRRHVGLVSQDIT------------- 273 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~------------- 273 (382)
|++.+|++++|+||||||||||+++|+|+.+|++|+|.+ +|.++.........+.+++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 557789999999999999999999999999999999999 9988865442111246999999985
Q ss_pred ---cccc-cHHHHHcCCCCC-CCCCHHHHHHHHHHcCh-HHHHHhCC
Q 016798 274 ---LFSG-TVAENIGYRDLM-TKIDMERVEHTARTANA-DEFVRTLP 314 (382)
Q Consensus 274 ---lf~~-ti~eNi~~~~~~-~~~~~~~~~~~~~~~~l-~~~i~~lp 314 (382)
+|+. |+ ||+.++... .....+.+.++++..++ .+..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 3544 78 999875321 12234678899999999 46666655
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-15 Score=153.07 Aligned_cols=163 Identities=13% Similarity=0.087 Sum_probs=100.9
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCcccc-ccHHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAE 281 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~e 281 (382)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--..+. +.+++++.|...... .|.++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 46889999999999999999999999999999999999999999999865222221 345777877765221 26776
Q ss_pred HHcCC---CCC----CCCCHHHHHHHHHHcC-------------hHHHHHhC---CCCcccccC-------CCCCCCChH
Q 016798 282 NIGYR---DLM----TKIDMERVEHTARTAN-------------ADEFVRTL---PQGYNTHIG-------PRGSSLSGG 331 (382)
Q Consensus 282 Ni~~~---~~~----~~~~~~~~~~~~~~~~-------------l~~~i~~l---p~Gldt~vg-------e~G~~lSgG 331 (382)
++... +|+ .+....+...+++.+. ..+.+.++ |.|....+. .....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 66422 110 0122233444443321 23333332 233332222 123467999
Q ss_pred HHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCcee
Q 016798 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 332 q~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI 380 (382)
|+||.++|.+ | |++||+.+.+.+.+.+.++.+ ++|++
T Consensus 405 ~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii 442 (511)
T 2oap_1 405 TRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHI 442 (511)
T ss_dssp CEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEE
T ss_pred CceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEE
Confidence 9999877521 5 788887665544444444432 44543
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.2e-13 Score=112.46 Aligned_cols=41 Identities=27% Similarity=0.389 Sum_probs=34.0
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc--eEEEcC
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDD 250 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G--~i~~~g 250 (382)
+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+.+++
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~ 72 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDA 72 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEET
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcH
Confidence 45665 8999999999999999999999999987 46 444444
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-12 Score=113.24 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=32.7
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G 244 (382)
++++++|+.++|+||+|+|||||++++++.+.|.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 567789999999999999999999999999977666
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-12 Score=115.39 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=97.3
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHHcCCC
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRD 287 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~ 287 (382)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++..|.. +..+|+....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57788999999999999999999999999974 588888777665544557789999999998865 6666653211
Q ss_pred ----CCCCCCHHHHHHHHHHc----------ChHHHHHhCCCCc------------ccccCCCCCCCChHHHHHHHHHHH
Q 016798 288 ----LMTKIDMERVEHTARTA----------NADEFVRTLPQGY------------NTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 288 ----~~~~~~~~~~~~~~~~~----------~l~~~i~~lp~Gl------------dt~vge~G~~lSgGq~QrialaRa 341 (382)
.....+.+.+.+.++.. ++.......|+.. ...+.+++..-....++|++-++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~ 156 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALARE 156 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 00112234555554431 2333444444331 112234455445667888888876
Q ss_pred cc---CCCCEEEEeCcCCCCCHH-HHHHHHHHHHHH
Q 016798 342 LY---QNSSVLILDEATSALDSR-SELLVRQAVDRL 373 (382)
Q Consensus 342 ll---~~~~ililDEpts~LD~~-~~~~i~~~l~~~ 373 (382)
.. ...+++|.++ |.+ +..++.+.++..
T Consensus 157 ~~~~~~~~d~vi~n~-----~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 157 EMAHYKEFDYLVVND-----NFDQAVQNLIHIISAE 187 (205)
T ss_dssp HHTTGGGCSEEEECS-----SHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCEEEECC-----CHHHHHHHHHHHHHHH
Confidence 54 4568777755 332 455666666543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.4e-14 Score=127.46 Aligned_cols=129 Identities=24% Similarity=0.251 Sum_probs=99.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC---CCCCceEEE--------cCEeCCC-CCHHHHhcceEEecCCC------ccc
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY---DPLSGCILV--------DDHDVQN-IRLDSLRRHVGLVSQDI------TLF 275 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~---~~~~G~i~~--------~g~~~~~-~~~~~~r~~i~~v~Q~~------~lf 275 (382)
.+.+++|+|++||||||++++|.+.+ .++.|++.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 678899987 7877653 44567888999999986 345
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccC-CCCCCCChHHHHHHHHHHHccCCCCEEEEeCc
Q 016798 276 SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG-PRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (382)
Q Consensus 276 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vg-e~G~~lSgGq~QrialaRall~~~~ililDEp 354 (382)
..++.+++. ++++..++..+..++.+...+.+..+.+. ++|.-++|+ .++++++++++++|+.++
T Consensus 84 ~~~v~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~ 149 (227)
T 1cke_A 84 GEDVSGEIR---------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDA 149 (227)
T ss_dssp TEECHHHHT---------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEEC
T ss_pred CeeCchhhC---------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeC
Confidence 557777762 46677888888888888776666655553 456777876 567788899999999887
Q ss_pred CC
Q 016798 355 TS 356 (382)
Q Consensus 355 ts 356 (382)
+.
T Consensus 150 ~~ 151 (227)
T 1cke_A 150 SS 151 (227)
T ss_dssp CH
T ss_pred CH
Confidence 53
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=4e-13 Score=133.14 Aligned_cols=151 Identities=18% Similarity=0.139 Sum_probs=91.0
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHc
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG 284 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~ 284 (382)
-++++|+++.|+.++|||+||||||||++.|+|..+ .+.+.+... +...+++|.++.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999853 334444332 3445777777651 1223444332
Q ss_pred CCCC---CCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHH
Q 016798 285 YRDL---MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (382)
Q Consensus 285 ~~~~---~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~ 361 (382)
+... ....... ..+..+.+. ..+.. +|-. .+.-.+||+|++|+.++||++..+|.++++ +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~--~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTR--VLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSS--EEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHHH--hhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 2110 0011121 111111111 01111 1100 122357999999999999999999999999 899987
Q ss_pred HHHHHHHHHHHH-hC-CCcee
Q 016798 362 SELLVRQAVDRL-LG-HHTVR 380 (382)
Q Consensus 362 ~~~~i~~~l~~~-~~-~~TvI 380 (382)
.. ...+.+.+. .+ +.+++
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi 302 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVL 302 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEE
T ss_pred hH-HHHHHHHHHHHhcCCeEE
Confidence 66 333444333 22 34554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-12 Score=121.63 Aligned_cols=137 Identities=16% Similarity=0.088 Sum_probs=94.0
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
+.++++++.|+.. . ++++|+ +|++++++|++|+||||++..|++++.+..|+|.+.+.|...-...
T Consensus 77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~-------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR-------- 142 (295)
T ss_dssp HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH--------
T ss_pred HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH--------
Confidence 4455666777532 1 678888 9999999999999999999999999999999999987776421100
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
+. +....+.. |++-.- .+..-+..+.+|.+++++...+++
T Consensus 143 -------------~q--------------l~~~~~~~-----------~l~~~~--~~~~~~p~~l~~~~l~~~~~~~~D 182 (295)
T 1ls1_A 143 -------------EQ--------------LRLLGEKV-----------GVPVLE--VMDGESPESIRRRVEEKARLEARD 182 (295)
T ss_dssp -------------HH--------------HHHHHHHH-----------TCCEEE--CCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred -------------HH--------------HHHhcccC-----------CeEEEE--cCCCCCHHHHHHHHHHHHHhCCCC
Confidence 00 00001111 111110 011223445678999999889999
Q ss_pred EEEEeCc-CCCCCHHHHHHHHHHHHHHhCCCc
Q 016798 348 VLILDEA-TSALDSRSELLVRQAVDRLLGHHT 378 (382)
Q Consensus 348 ililDEp-ts~LD~~~~~~i~~~l~~~~~~~T 378 (382)
++|+||| ++++|......+.+..+....+.+
T Consensus 183 ~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~ 214 (295)
T 1ls1_A 183 LILVDTAGRLQIDEPLMGELARLKEVLGPDEV 214 (295)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEE
T ss_pred EEEEeCCCCccccHHHHHHHHHHhhhcCCCEE
Confidence 9999999 999999888777777766655444
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-12 Score=129.16 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=55.3
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~ 257 (382)
.+.++++.. ..+|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 345555432 1479999999999 999999999999999999999999999999999999887554
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-12 Score=122.99 Aligned_cols=98 Identities=23% Similarity=0.337 Sum_probs=72.2
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCC
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRD 287 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~ 287 (382)
++++.++|++++++|+|||||||+++.|++.+.+.+|+|.+.+.|... . ...+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r-------~--------------~a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR-------A--------------AAIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC-------H--------------HHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc-------H--------------HHHH------
Confidence 355567899999999999999999999999999999999987766421 0 0111
Q ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH---HHHHHccCCCCEEEEeCcCC
Q 016798 288 LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL---AIARALYQNSSVLILDEATS 356 (382)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri---alaRall~~~~ililDEpts 356 (382)
++...++.. |++. + ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 150 --------qL~~~~~~~-----------gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 150 --------QLKIWGERV-----------GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp --------HHHHHHHHH-----------TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred --------HHHHHHHHc-----------CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 121222221 2221 1 24579999999 99999999999999999975
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.20 E-value=9.1e-13 Score=125.46 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=57.3
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEE---cCEeCCCCCHHHHhcceEEecCCCcccc-----ccHHH
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV---DDHDVQNIRLDSLRRHVGLVSQDITLFS-----GTVAE 281 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-----~ti~e 281 (382)
+++.+|++++|+||||+|||||+++|+|+.+|..|+|.+ +|.+..... ..++..+++++|+|.++. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 557799999999999999999999999999999999999 887765432 222223899999998764 478 8
Q ss_pred HHc--CC------------C-CCCCCCHHHHHHHHHHcChHH
Q 016798 282 NIG--YR------------D-LMTKIDMERVEHTARTANADE 308 (382)
Q Consensus 282 Ni~--~~------------~-~~~~~~~~~~~~~~~~~~l~~ 308 (382)
|+. |. + .........+.++++..++.+
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 883 21 0 011123456778888887754
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-13 Score=124.49 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=23.3
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHh-hCCCC
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-RLYDP 241 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~-g~~~~ 241 (382)
...+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4678999999999999999999999999999999 99943
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=121.96 Aligned_cols=126 Identities=20% Similarity=0.269 Sum_probs=77.9
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHH--hhCCCCCCc-----eEEEcCEeCCC-CCHHHHhcceEEecCCCccccccHHHH
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLL--LRLYDPLSG-----CILVDDHDVQN-IRLDSLRRHVGLVSQDITLFSGTVAEN 282 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll--~g~~~~~~G-----~i~~~g~~~~~-~~~~~~r~~i~~v~Q~~~lf~~ti~eN 282 (382)
-|++|++++|+||||||||||++.+ .+..+|+.| .+++++.+... .....+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 5899999999999999999999944 567766444 78888865311 112233455666544 67788
Q ss_pred HcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc--cCCCCEEEEeCcCCCCCH
Q 016798 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEATSALDS 360 (382)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal--l~~~~ililDEpts~LD~ 360 (382)
+.+... .+.++..+.++ -++.+ -.+|+++++||||+.+|.
T Consensus 247 i~~~~~---~~~~~~~~~l~-----------------------------------~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 247 VAYARA---YNADHQLRLLD-----------------------------------AAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp EEEEEC---CSHHHHHHHHH-----------------------------------HHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred EEEecc---CChHHHHHHHH-----------------------------------HHHHHHHhcCCceEEecchhhhCch
Confidence 776542 12222222111 11111 247999999999999997
Q ss_pred HHH------------HHHHHHHHHHhC--CCceec
Q 016798 361 RSE------------LLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 361 ~~~------------~~i~~~l~~~~~--~~TvI~ 381 (382)
+.. ..+.+.|+++.+ +.|+|.
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIl 323 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV 323 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 533 456666766643 566653
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.5e-12 Score=118.18 Aligned_cols=72 Identities=28% Similarity=0.299 Sum_probs=62.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh---hCCCCCCceEE--------EcCEeCC-CCCHHHHhcceEEecCCC------cc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLL---RLYDPLSGCIL--------VDDHDVQ-NIRLDSLRRHVGLVSQDI------TL 274 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~---g~~~~~~G~i~--------~~g~~~~-~~~~~~~r~~i~~v~Q~~------~l 274 (382)
++|++++|+|||||||||++++|+ |++.|++|.+. .+|.++. ......+++.+++++|++ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 9999884 456778899999999653 45
Q ss_pred ccccHHHHHc
Q 016798 275 FSGTVAENIG 284 (382)
Q Consensus 275 f~~ti~eNi~ 284 (382)
+..++.+|+.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 6668888873
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.13 E-value=5.3e-13 Score=117.69 Aligned_cols=135 Identities=16% Similarity=0.060 Sum_probs=80.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccc-cccHHHHHcCCCCCCCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKID 293 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eNi~~~~~~~~~~ 293 (382)
|++++|+|||||||||+++.|++ |.+|.+.++|.++... ...++++|....+ ..++++|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 78999999999999999999998 6789999988655321 2457777766433 34777776321
Q ss_pred HHHHHHHHHHcChHHHHHhCCCCcccccCCC----CCCC--ChHHHHHHHHHH------HccCCCCEEEEeCcCCCCCHH
Q 016798 294 MERVEHTARTANADEFVRTLPQGYNTHIGPR----GSSL--SGGQRQRLAIAR------ALYQNSSVLILDEATSALDSR 361 (382)
Q Consensus 294 ~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~----G~~l--SgGq~QrialaR------all~~~~ililDEpts~LD~~ 361 (382)
...... .+.. . =++...+.. -..+ |+|++|++.++. +++++|+...+|+ ++|+.
T Consensus 66 ---~~~~~~-~~~~-~------ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~ 131 (189)
T 2bdt_A 66 ---TVNFLL-AQND-V------VLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGER 131 (189)
T ss_dssp ---HHHHHH-TTCE-E------EEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGG
T ss_pred ---HHHHHh-cCCc-E------EEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHH
Confidence 000000 0000 0 011110100 0123 778777877777 7788887777774 78887
Q ss_pred HHHHHHHHHHHHhC-CCcee
Q 016798 362 SELLVRQAVDRLLG-HHTVR 380 (382)
Q Consensus 362 ~~~~i~~~l~~~~~-~~TvI 380 (382)
..+. .+.++.+.. +.|+|
T Consensus 132 ~~~~-~~~~~~~~~~~~~ii 150 (189)
T 2bdt_A 132 CLEL-VEEFESKGIDERYFY 150 (189)
T ss_dssp GGHH-HHHHHHTTCCTTSEE
T ss_pred HHHH-HHHHhhcCCCccEEE
Confidence 7766 777776643 35554
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.9e-14 Score=136.74 Aligned_cols=91 Identities=27% Similarity=0.293 Sum_probs=67.7
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCC-------CEEEEECCCCCcHHHHHHHHhhCC----CCCCceEEEcCEeCCCCCHH
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAG-------ETVALIGPSGGGKSTLAKLLLRLY----DPLSGCILVDDHDVQNIRLD 259 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G-------~~~aivG~sGsGKSTl~~ll~g~~----~~~~G~i~~~g~~~~~~~~~ 259 (382)
++++..|+. ..+++++++.+++| +.++|+||+|+|||||+++++|.+ .|.+|.+..++.++..+...
T Consensus 22 ~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 22 KSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp SSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred ccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence 344445543 35899999999887 899999999999999999999998 67788877766554321111
Q ss_pred HHhcceEEecCCCccccccHHHHHc
Q 016798 260 SLRRHVGLVSQDITLFSGTVAENIG 284 (382)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eNi~ 284 (382)
..+..|.+++|...++. ++.|++.
T Consensus 100 ~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 100 LERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp CCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred ccCCCEEEEcchhhcCH-HHHHHHH
Confidence 11456999999887776 7888774
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.9e-12 Score=110.37 Aligned_cols=143 Identities=24% Similarity=0.169 Sum_probs=77.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC-----------CCceEEEcCEeCCC--CCHHHHhcceEEecCCCcccc--ccHHH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDP-----------LSGCILVDDHDVQN--IRLDSLRRHVGLVSQDITLFS--GTVAE 281 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~-----------~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~~lf~--~ti~e 281 (382)
+++|+|++|||||||++.++|...| +.|+|.++|.++.- ++....++..++++|...-.. -++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976531 111111222333332211000 01222
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCH
Q 016798 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (382)
Q Consensus 282 Ni~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~ 360 (382)
+... .+.+++...++. .-..-+...- -.++.. ..|..-..+....||+++.+|+++++| ||++|.
T Consensus 111 ~~~~------~s~~~~~~~~~~-----~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKH------LTYENVERWLKE-----LRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCH------HHHHTHHHHHHH-----HHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCH------HHHHHHHHHHHH-----HHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 1100 001111111110 0000011100 011111 122222223478899999999999999 999999
Q ss_pred HHHHHHHHHHHHH
Q 016798 361 RSELLVRQAVDRL 373 (382)
Q Consensus 361 ~~~~~i~~~l~~~ 373 (382)
.+...+.+.|.+.
T Consensus 177 ~~v~~l~~~l~~~ 189 (191)
T 1oix_A 177 TNVEAAFQTILTE 189 (191)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999888887653
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-13 Score=129.21 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=95.6
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEe
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
+++++.+.|.. +.+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++.+......++.++++
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 34566655643 35899999999999 99999999999999999999985 78999998876544444455668888
Q ss_pred cCCCc-ccc-ccHHHHH-cCCCCCCC---CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 269 SQDIT-LFS-GTVAENI-GYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 269 ~Q~~~-lf~-~ti~eNi-~~~~~~~~---~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+|++. .++ -++.||+ .++..... ...++..+.+ ..++ ..|||||+||..+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHH---------------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEEe
Confidence 88864 343 3677877 33221000 0011111111 1122 24789999999999999
Q ss_pred cCCCCEEEEeCcC
Q 016798 343 YQNSSVLILDEAT 355 (382)
Q Consensus 343 l~~~~ililDEpt 355 (382)
..+|++ ||++.
T Consensus 185 t~~p~~--ld~~l 195 (278)
T 1iy2_A 185 TNRPDI--LDPAL 195 (278)
T ss_dssp ESCTTS--SCHHH
T ss_pred cCCchh--CCHhH
Confidence 999987 67664
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-12 Score=117.40 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=52.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC--------H
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--------L 258 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~--------~ 258 (382)
.|+++|++..|.. ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...+ .
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 5788887654421 566666 899999999999999999999999999999999999884332 2
Q ss_pred HHHhcceEEecCC
Q 016798 259 DSLRRHVGLVSQD 271 (382)
Q Consensus 259 ~~~r~~i~~v~Q~ 271 (382)
...+..++|++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 2346789999985
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-13 Score=125.63 Aligned_cols=141 Identities=17% Similarity=0.178 Sum_probs=95.9
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
.+++++.+.|.. +.+++++++++++| ++|+||||||||||++++++... .|.+.++|.++.+......++.++.
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 345666666643 35899999999999 99999999999999999999985 7899999877654444444566778
Q ss_pred ecCCCc-cc-cccHHHHH-cCCCCCCC---CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 268 VSQDIT-LF-SGTVAENI-GYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 268 v~Q~~~-lf-~~ti~eNi-~~~~~~~~---~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
++|+.. .+ .-++.||+ .++..... ...++..+.+ ..++ ..|||||+||..+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH---------------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEE
Confidence 888764 33 33677777 33321000 0111111111 1122 2477999999999999
Q ss_pred ccCCCCEEEEeCcCC
Q 016798 342 LYQNSSVLILDEATS 356 (382)
Q Consensus 342 ll~~~~ililDEpts 356 (382)
+..+|++ +|++.-
T Consensus 160 ~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 160 ATNRPDI--LDPALL 172 (254)
T ss_dssp EESCGGG--SCGGGG
T ss_pred ccCCchh--CCHHHc
Confidence 9999987 687654
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-10 Score=111.50 Aligned_cols=55 Identities=31% Similarity=0.398 Sum_probs=49.4
Q ss_pred CCCChHHHHHH------HHHHHccCC-CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 326 SSLSGGQRQRL------AIARALYQN-SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 326 ~~lSgGq~Qri------alaRall~~-~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
..|||||+||+ ++||++..+ |+++||||||++||+.+...+.+.|+++.+++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi 340 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEE
Confidence 58999999988 668999999 99999999999999999999999999876556665
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-11 Score=126.24 Aligned_cols=157 Identities=16% Similarity=0.164 Sum_probs=103.8
Q ss_pred CCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCC-ceEEEcCEeCCCCCHHHHhcceEEecCCC--------
Q 016798 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-GCILVDDHDVQNIRLDSLRRHVGLVSQDI-------- 272 (382)
Q Consensus 202 ~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-------- 272 (382)
..+++++++.+++|+.+.|+||+|+|||||+++|++++++.. |.+.+++.+.... ...++++|+..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 358999999999999999999999999999999999999887 8888888766543 44688887754
Q ss_pred --------------ccc-cccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 273 --------------TLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 273 --------------~lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
+.| ..++.+|+...+.... ....+.. ......+++.... ++. .....+|+|++|++.
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~-~~~~v~~--~~~~~~~L~G~~~--~~~---~~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRT-KAPFIDA--TGAHAGALLGDVR--HDP---FQSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCS-SCCEEEC--TTCCHHHHHCEEC--CCC---C----CCCCGGGGEE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCC-CCCEEEc--CCCCHHhcCceEE--ech---hhcCCcccccccccc
Confidence 222 2244445543221000 0000000 0111222332211 011 122459999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~ 372 (382)
.++....++.+|+|||... |++.....+.+.|++
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 899888888888865
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.00 E-value=8.3e-11 Score=104.83 Aligned_cols=84 Identities=26% Similarity=0.383 Sum_probs=67.2
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC-------------CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccc
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 275 (382)
|+...+|+.++|+||||||||||++.|++.++ |..|+ +||++..-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 44456899999999999999999999999986 67787 689998888888888765 7999999
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHHH
Q 016798 276 SGTVAENIGYRDLMTKIDMERVEHTART 303 (382)
Q Consensus 276 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~ 303 (382)
.+++.+|. ||.+ .+.+.++++.
T Consensus 88 ~~~~~~n~-YGt~-----~~~v~~~l~~ 109 (197)
T 3ney_A 88 FGSYQGNM-FGTK-----FETVHQIHKQ 109 (197)
T ss_dssp EEEETTEE-EEEE-----HHHHHHHHHT
T ss_pred hhhhhcee-cccc-----hhhHHHHHhc
Confidence 99999994 7643 4556666554
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=9e-11 Score=102.85 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=58.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEE----------cCEeCCCCCHHHHhcceEEecCCCccccccHHHH
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILV----------DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~----------~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 282 (382)
+|++++|+||||||||||+++|++++++ ..|.|.. +|.++...+.+.+++. +.|+.+++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 7999999999999999999999999874 4555543 5555555666666653 568888888888888
Q ss_pred HcCCCCCCCCCHHHHHHHHH
Q 016798 283 IGYRDLMTKIDMERVEHTAR 302 (382)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~ 302 (382)
.+|. +.+.+.++++
T Consensus 81 -~yg~-----~~~~i~~~l~ 94 (180)
T 1kgd_A 81 -MYGT-----KLETIRKIHE 94 (180)
T ss_dssp -EEEE-----EHHHHHHHHH
T ss_pred -cccc-----cHHHHHHHHH
Confidence 4543 2455555554
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-11 Score=121.30 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=87.4
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 282 (382)
.+++++|+++++|+.++|+||+|||||||+++|+|.+ +|.+..- +. +.+.++..+++++|...+| .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NL---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SS---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--ec---cchhHHHHHHHhcchhHHH----HHH
Confidence 4799999999999999999999999999999999964 6777651 11 1122333478889887643 334
Q ss_pred HcCCCC-CCCC-CHHHHHHHHHHcChHHHHHh---------CCCCcc-----cccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 283 IGYRDL-MTKI-DMERVEHTARTANADEFVRT---------LPQGYN-----THIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 283 i~~~~~-~~~~-~~~~~~~~~~~~~l~~~i~~---------lp~Gld-----t~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
+..... .+.. ..+.+. ....+.+.+.. .|+-++ -.+..+...+++|++||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 432211 0000 000110 11223333321 111111 0233455678999999999998899999
Q ss_pred CEEE-EeCcCC
Q 016798 347 SVLI-LDEATS 356 (382)
Q Consensus 347 ~ili-lDEpts 356 (382)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9888 898876
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=102.00 Aligned_cols=102 Identities=13% Similarity=0.143 Sum_probs=67.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~ 292 (382)
++|++++++|+|||||||+++.|++.+.+.+| +++.++.+|++ ..+..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 47999999999999999999999999988778 24667777763 323333331
Q ss_pred CHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHH
Q 016798 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369 (382)
Q Consensus 293 ~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~ 369 (382)
...+.. |++-... .+ +...+.+++++ ++|+++|+| |+++|......+.+.
T Consensus 155 ------~~~~~~-----------gl~~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el 204 (296)
T 2px0_A 155 ------TYAELL-----------QAPLEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDEL 204 (296)
T ss_dssp ------HHHTTT-----------TCCCCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHH
T ss_pred ------HHHHhc-----------CCCeEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHH
Confidence 111111 1111111 12 34457778765 999999999 999998766555443
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-09 Score=96.97 Aligned_cols=138 Identities=23% Similarity=0.212 Sum_probs=73.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC-----CC------CceEEEcCEeCC----CCC-HHHHhcceEEecCCCc--c--cc
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD-----PL------SGCILVDDHDVQ----NIR-LDSLRRHVGLVSQDIT--L--FS 276 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~-----~~------~G~i~~~g~~~~----~~~-~~~~r~~i~~v~Q~~~--l--f~ 276 (382)
+++|+|++|||||||++.++|... |+ .|.|.++|.++. +.+ .+.+++......++.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 689999999999999999999842 43 578999997652 222 2233332333333322 1 11
Q ss_pred ccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCccc-ccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcC
Q 016798 277 GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355 (382)
Q Consensus 277 ~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt-~vge~G~~lSgGq~QrialaRall~~~~ililDEpt 355 (382)
.+-.. +.+++...++. .-...+.+... .++.. ..|..-.......||+++.+|++.++| |
T Consensus 87 ~~~~~-----------s~~~~~~~~~~-----~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~ 147 (199)
T 2f9l_A 87 IAKHL-----------TYENVERWLKE-----LRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNNLSFIE--T 147 (199)
T ss_dssp TTCHH-----------HHHTHHHHHHH-----HHHHSCTTCEEEEEEEC-TTCGGGCCSCHHHHHHHHHHTTCEEEE--C
T ss_pred CcCHH-----------HHHHHHHHHHH-----HHHhcCCCCeEEEEEEC-cccccccCcCHHHHHHHHHHcCCeEEE--E
Confidence 11100 01111111110 00000111000 11111 112111112245689999999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 016798 356 SALDSRSELLVRQAVDRL 373 (382)
Q Consensus 356 s~LD~~~~~~i~~~l~~~ 373 (382)
|++|......+.+.|.+.
T Consensus 148 Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 148 SALDSTNVEEAFKNILTE 165 (199)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999888888777553
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=8.8e-10 Score=98.38 Aligned_cols=53 Identities=25% Similarity=0.219 Sum_probs=44.0
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCC
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYR 286 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~ 286 (382)
+-=++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++++ +|+.++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 334578899999999999999999999999875 37899999998876 566543
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.8e-10 Score=115.21 Aligned_cols=147 Identities=17% Similarity=0.171 Sum_probs=84.8
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhh--CCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCcccc---cc---
Q 016798 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLR--LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS---GT--- 278 (382)
Q Consensus 207 ~isl~i~~G~~~aivG~sGsGKSTl~~ll~g--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~---~t--- 278 (382)
-+++++.++..+.|+|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. -||++. ..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 4788999999999999999999999999886 67777899998888877644333321 122221 00
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHH----------HHHHHccCCCC-
Q 016798 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL----------AIARALYQNSS- 347 (382)
Q Consensus 279 i~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qri----------alaRall~~~~- 347 (382)
..+.+.... ...++-.+.++..++.++- +|+..+ ...+|+||+|+. ++|+++...|.
T Consensus 232 a~~~L~~~~----~EmerR~~ll~~~Gv~~i~-----~yn~~~---~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~i 299 (512)
T 2ius_A 232 AANALRWCV----NEMERRYKLMSALGVRNLA-----GYNEKI---AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYI 299 (512)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHTTCSSHH-----HHHHHH---HHHHHTTCCCBCTTC---------CCBCCCCCEE
T ss_pred HHHHHHHHH----HHHHHHHHHHHHcCCccHH-----HHHHHH---HHHhhcCCcccccccccccchhccccccccCCcE
Confidence 111111000 0011112333333322111 111111 124677877652 46778888898
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
++++||+++-+|.. ...+.+.+.++
T Consensus 300 vlvIDE~~~ll~~~-~~~~~~~l~~L 324 (512)
T 2ius_A 300 VVLVDEFADLMMTV-GKKVEELIARL 324 (512)
T ss_dssp EEEEETHHHHHHHH-HHHHHHHHHHH
T ss_pred EEEEeCHHHHHhhh-hHHHHHHHHHH
Confidence 78899999988743 33455555444
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-09 Score=96.74 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=52.1
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHHc
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIG 284 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~ 284 (382)
-.++-++|++++|+|+|||||||++++|++.+ |.+.++|.++... ....+...++++|++..+.. ++.+|+.
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 34667899999999999999999999999988 8999999877531 11222357899999877644 6777764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.7e-10 Score=102.33 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=35.8
Q ss_pred cEEEEeE-EEEeCCCCCCccceeeEEeeC---CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 187 DVKFCNI-SFKYADNMPLVLDQLNLHIRA---GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 187 ~i~~~~v-~f~y~~~~~~~l~~isl~i~~---G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|+ +|+|.+ ..++|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC-cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999933 34699999999999 9999999999999999999999855
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-10 Score=113.92 Aligned_cols=134 Identities=14% Similarity=0.140 Sum_probs=82.9
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhh------------CCCCCCceEEEcCEeCCCCC-HHHHhcc---eEEecCCCcc
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLR------------LYDPLSGCILVDDHDVQNIR-LDSLRRH---VGLVSQDITL 274 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g------------~~~~~~G~i~~~g~~~~~~~-~~~~r~~---i~~v~Q~~~l 274 (382)
++++|.+++|||++|+|||||++.|.| ..+|+.|.|.++|..+..+. ...-++. ...+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 467899999999999999999999999 56799999999874432110 0000112 2467777777
Q ss_pred ccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcCh-HHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC--CEEE
Q 016798 275 FSG-TVAENIGYRDLMTKIDMERVEHTARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS--SVLI 350 (382)
Q Consensus 275 f~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l-~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~--~ili 350 (382)
..+ |..|++ .. .....++.+.. -..++... + .....+||+. || ++.+
T Consensus 96 ~~~~s~~e~L---------~~-~fl~~ir~~d~il~Vvd~~~---d----~~i~~v~~~~------------dP~~di~i 146 (392)
T 1ni3_A 96 TKGASTGVGL---------GN-AFLSHVRAVDAIYQVVRAFD---D----AEIIHVEGDV------------DPIRDLSI 146 (392)
T ss_dssp CCCCCSSSSS---------CH-HHHHHHTTCSEEEEEEECCC---T----TCSSCCSSSS------------CHHHHHHH
T ss_pred ccCCcHHHHH---------HH-HHHHHHHHHHHHHHHHhccc---c----ceeeeecccc------------Ccchhhhh
Confidence 654 433332 11 12222222211 00111100 1 1222345542 89 9999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHH
Q 016798 351 LDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~ 373 (382)
+|||++.+|.+...+..+.++..
T Consensus 147 ldeel~~~D~~~~~k~~~~l~~~ 169 (392)
T 1ni3_A 147 IVDELLIKDAEFVEKHLEGLRKI 169 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888776
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.5e-09 Score=93.17 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=41.2
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccc
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 275 (382)
++|++|++++|+|||||||||++++|++++.|+.| +.+ +....... ...+..++|++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHH
Confidence 46889999999999999999999999999977655 222 12222211 11123477888876443
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=5e-09 Score=109.92 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=73.7
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCC--CCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCC
Q 016798 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYR 286 (382)
Q Consensus 209 sl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~ 286 (382)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|..+.+....+.++.+++.+|.+.++..+++.||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987765 77999 789999999998889999999999999988888888532
Q ss_pred CCCCCCCHHHHHHHHHHcCh
Q 016798 287 DLMTKIDMERVEHTARTANA 306 (382)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l 306 (382)
....++ ..++..+++.+..
T Consensus 82 pG~~~f-~~~~~~~l~~ad~ 100 (665)
T 2dy1_A 82 PGYGDF-VGEIRGALEAADA 100 (665)
T ss_dssp CCSGGG-HHHHHHHHHHCSE
T ss_pred CCccch-HHHHHHHHhhcCc
Confidence 211111 2445555555543
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.1e-09 Score=110.06 Aligned_cols=91 Identities=27% Similarity=0.361 Sum_probs=60.7
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc-eEE-EcCEeCCC-------CCHH---HHhcceEEecCCCccccc
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CIL-VDDHDVQN-------IRLD---SLRRHVGLVSQDITLFSG 277 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G-~i~-~~g~~~~~-------~~~~---~~r~~i~~v~Q~~~lf~~ 277 (382)
..+++|++++|+|+||||||||+++|+|.+.|++| ++. +||.++.+ ++.. .+++.+++++|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36789999999999999999999999999999887 784 89876532 2221 2345678888863
Q ss_pred cHHHHHcCCCCCC--CCCHHHHHHHHHHcC
Q 016798 278 TVAENIGYRDLMT--KIDMERVEHTARTAN 305 (382)
Q Consensus 278 ti~eNi~~~~~~~--~~~~~~~~~~~~~~~ 305 (382)
+..+|+.+..... ....++..+.++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 4455654322110 112344555565544
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.67 E-value=5.7e-09 Score=99.93 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=62.0
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH----HHH-----hcceEEe-cCCCcc
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSL-----RRHVGLV-SQDITL 274 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~-----r~~i~~v-~Q~~~l 274 (382)
++++||++++|++++++|++|+||||++..|++.+.+.+|+|.+.+.|...... ..+ +..+.++ +|.+..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 467888899999999999999999999999999999999999998888754321 234 5678999 776554
Q ss_pred ccc-cHHHHHc
Q 016798 275 FSG-TVAENIG 284 (382)
Q Consensus 275 f~~-ti~eNi~ 284 (382)
.+. ++.+++.
T Consensus 175 ~p~~~~~~~l~ 185 (320)
T 1zu4_A 175 DPASVVFDAIK 185 (320)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 433 4556553
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=6.5e-10 Score=98.89 Aligned_cols=61 Identities=30% Similarity=0.378 Sum_probs=46.9
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE--EEcCEeCC
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI--LVDDHDVQ 254 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i--~~~g~~~~ 254 (382)
+|++.++.. ....+..++..++|++++|+|||||||||++++|++.+. ..|.+ .+||.++.
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 355554432 346788899999999999999999999999999999997 77988 89987764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.65 E-value=3.9e-08 Score=95.22 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=29.9
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~ 247 (382)
-+++|+++.|.||+|||||||+..++.......|.+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vl 93 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAA 93 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 5889999999999999999998888766544444444
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.62 E-value=9.7e-09 Score=100.07 Aligned_cols=144 Identities=19% Similarity=0.204 Sum_probs=83.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC-----------CCCceEEEcCEeCCCCCHHHHhcceEEecCCCcc----ccccHHH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD-----------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL----FSGTVAE 281 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~-----------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l----f~~ti~e 281 (382)
+++|+|++|||||||++.|+|... |+.|.|.++|.++. +....|++.+.|+- |..|. +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHH-H
Confidence 399999999999999999999875 57799999987652 23456777665542 33332 2
Q ss_pred HHc------CCCCCCCCCHHHHHHHHHHcChHHHHHhCC-CCc-ccccCCCCCCCChHHHHHHHHH----HHc-cCCCCE
Q 016798 282 NIG------YRDLMTKIDMERVEHTARTANADEFVRTLP-QGY-NTHIGPRGSSLSGGQRQRLAIA----RAL-YQNSSV 348 (382)
Q Consensus 282 Ni~------~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp-~Gl-dt~vge~G~~lSgGq~Qriala----Ral-l~~~~i 348 (382)
.+. +.-...+ ...+..+..+. ..+.+..+. .+. --.|+..-..+|++++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~-~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTF-SENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp GGGGSSEEEEEEETTS-CHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHhCCEEEEEEECCC-CcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 222 1100011 11111111111 112222210 111 1122444556788888988877 666 445554
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHh
Q 016798 349 LILDEATSALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 349 lilDEpts~LD~~~~~~i~~~l~~~~ 374 (382)
+|||++|...-..+.+.|.+..
T Consensus 331 ----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 ----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ----EECBTTTTBSHHHHHHHHHHHH
T ss_pred ----EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999998888888887653
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-09 Score=110.57 Aligned_cols=140 Identities=17% Similarity=0.183 Sum_probs=94.3
Q ss_pred EEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEe
Q 016798 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (382)
Q Consensus 189 ~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 268 (382)
+++++...|.. +..++++++++++| +.|+||+|+|||||+++|++... .+.+.+++.++.+.......+++..+
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 34455444432 35789999999999 99999999999999999999985 68999999887665444455667788
Q ss_pred cCCCc-cccc-cHHHHH-cCCCCCCC---CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 269 SQDIT-LFSG-TVAENI-GYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 269 ~Q~~~-lf~~-ti~eNi-~~~~~~~~---~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
+|... .++. .+.|++ .++..... ...++..+.+. .++. .|||||+|+..+++|.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~-----~LL~---------------~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLLV---------------EMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH-----HHHH---------------HGGGCCSSCCCEEEEC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH-----HHHH---------------HhcccccCccEEEEEe
Confidence 88875 3333 567777 34321100 01222222221 2222 3667888888888888
Q ss_pred cCCCCEEEEeCcCC
Q 016798 343 YQNSSVLILDEATS 356 (382)
Q Consensus 343 l~~~~ililDEpts 356 (382)
..+|++ |||+.-
T Consensus 176 tn~p~~--LD~aLl 187 (499)
T 2dhr_A 176 TNRPDI--LDPALL 187 (499)
T ss_dssp CSCGGG--SCTTTS
T ss_pred cCChhh--cCcccc
Confidence 888887 788765
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.59 E-value=9.1e-09 Score=92.14 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=44.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCC-CCceEEE----------cCEeCCCCCHHHHhcceEEecCCCccccccHHH
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILV----------DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~-~~G~i~~----------~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (382)
++|++++|+|||||||||+++.|++.++| ..+.+.. +|.+....+...+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999987 4444432 34444444555554432 3445555444444
Q ss_pred H
Q 016798 282 N 282 (382)
Q Consensus 282 N 282 (382)
|
T Consensus 83 ~ 83 (208)
T 3tau_A 83 N 83 (208)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-08 Score=88.69 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=48.1
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE--eCCCCC----HHHHhcceEEecCCCc
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH--DVQNIR----LDSLRRHVGLVSQDIT 273 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~--~~~~~~----~~~~r~~i~~v~Q~~~ 273 (382)
+++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++-... ....+..|.+++|+|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 7889999999 99999999999999999999998887765433221 110000 0013457899999863
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.7e-08 Score=88.29 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=25.1
Q ss_pred EeCC-CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 196 KYAD-NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 196 ~y~~-~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|+. ...++++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3443 3357899999999999999999999999999999999876
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-08 Score=90.05 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=34.7
Q ss_pred Ccccee-eEEeeCCCEEEEECCCCCcHHHHHH-HHhhCCCCCCceEEEcC
Q 016798 203 LVLDQL-NLHIRAGETVALIGPSGGGKSTLAK-LLLRLYDPLSGCILVDD 250 (382)
Q Consensus 203 ~~l~~i-sl~i~~G~~~aivG~sGsGKSTl~~-ll~g~~~~~~G~i~~~g 250 (382)
+.|+++ .--+++|+.++|+||+|||||||+. ++.+..++..+.+.+++
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 356666 5679999999999999999999965 44555544444445543
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=4.2e-09 Score=95.86 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=49.9
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCC------CHHH----HhcceEEecCCCcccc
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI------RLDS----LRRHVGLVSQDITLFS 276 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~------~~~~----~r~~i~~v~Q~~~lf~ 276 (382)
-+.+.++|++++|.|+|||||||++++|+|+ +|+|.+.+.+.... .... .++.+++++|++.++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3445689999999999999999999999998 78999998875421 1111 1356889999877654
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-07 Score=93.60 Aligned_cols=154 Identities=11% Similarity=0.072 Sum_probs=91.6
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc-eEEEcCEeCCCCCHHHHhcce-EEecCCCccccccHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVDDHDVQNIRLDSLRRHV-GLVSQDITLFSGTVA 280 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i-~~v~Q~~~lf~~ti~ 280 (382)
+.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .|.+-+. +.+...+++++ +....-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~------~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNIN------A- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCC------H-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCC------H-
Confidence 468888888999999999999999999999999988766545 5666443 34445554332 1111100 0
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc--CCCCEEEEeCcCCCC
Q 016798 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY--QNSSVLILDEATSAL 358 (382)
Q Consensus 281 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall--~~~~ililDEpts~L 358 (382)
+.+..|. .++++..++.+.. +.+...| -.+. ....+|.+|.+ +.+|.+. .+|+++|+|+++.-.
T Consensus 261 ~~l~~g~----l~~~~~~~~~~a~---~~l~~~~----l~i~-d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 261 QNLRTGK----LTPEDWGKLTMAM---GSLSNAG----IYID-DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp HHHHTSC----CCHHHHHHHHHHH---HHHHSSC----EEEE-CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred HHHhcCC----CCHHHHHHHHHHH---HHHhcCC----EEEE-CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 1222221 3444443333221 2232222 1111 23478999876 5667766 579999999999877
Q ss_pred CH--------HHHHHHHHHHHHHhC--CCcee
Q 016798 359 DS--------RSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 359 D~--------~~~~~i~~~l~~~~~--~~TvI 380 (382)
+. .....+.+.|+++.+ +.++|
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi 358 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVI 358 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 43 122455566665542 45555
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.4e-07 Score=88.83 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=35.8
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh--CCCCCCceEEEcCE
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR--LYDPLSGCILVDDH 251 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g--~~~~~~G~i~~~g~ 251 (382)
.+|++++++++ .+++||++|||||||++.|.| ++++.+|.+.....
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 47899999998 999999999999999999999 77777787754443
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=8.7e-08 Score=82.78 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=41.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc-ceEEecCCCcc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR-HVGLVSQDITL 274 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~-~i~~v~Q~~~l 274 (382)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++.. ...+++ .+++.+|++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~ 62 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDDDR 62 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCcccc
Confidence 469999999999999999999999976 789998876643 122222 35666666443
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-07 Score=83.40 Aligned_cols=47 Identities=21% Similarity=0.156 Sum_probs=40.3
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~ 257 (382)
..++|++++|+|+|||||||+++.|.+++++.+|.|.+.+.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 35789999999999999999999999999988999988766654444
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.30 E-value=9.6e-08 Score=92.79 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=49.4
Q ss_pred CCcEEEEeEEEEeCCCCCCccc--------------eeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 185 NGDVKFCNISFKYADNMPLVLD--------------QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~--------------~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.+.|+||+|.||.. +..|+ |+++.|.+|++++|+||+|+|||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4679999999999964 56888 899999999999999999999999999999986
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.29 E-value=4.6e-07 Score=89.74 Aligned_cols=144 Identities=16% Similarity=0.116 Sum_probs=84.4
Q ss_pred EEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH-HhcceEEe
Q 016798 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHVGLV 268 (382)
Q Consensus 190 ~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~v 268 (382)
.++++..|++. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|.......+ ++..
T Consensus 79 ~~~L~~~~~~~--~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~---- 148 (425)
T 2ffh_A 79 YEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL---- 148 (425)
T ss_dssp HHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH----
T ss_pred HHHHHHHhCCC--c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh----
Confidence 34455556432 1 567777 89999999999999999999999999999999999877765422211 2110
Q ss_pred cCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhC-CCCcccccCCCCCCCC---hHHHHHHHHHHHccC
Q 016798 269 SQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTL-PQGYNTHIGPRGSSLS---GGQRQRLAIARALYQ 344 (382)
Q Consensus 269 ~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l-p~Gldt~vge~G~~lS---gGq~QrialaRall~ 344 (382)
.-+.|+.+.......+..++. .+.+..+ .+++|..+-+-+..++ .-..+..++++++..
T Consensus 149 ---------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~p 211 (425)
T 2ffh_A 149 ---------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP 211 (425)
T ss_dssp ---------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC
T ss_pred ---------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCC
Confidence 001122111000112334431 1222222 2467766554333332 245666778888866
Q ss_pred CCCEEEEeCcCCCCCHH
Q 016798 345 NSSVLILDEATSALDSR 361 (382)
Q Consensus 345 ~~~ililDEpts~LD~~ 361 (382)
++-++++| ++++.|..
T Consensus 212 d~vlLVvD-a~tgq~av 227 (425)
T 2ffh_A 212 DEVLLVLD-AMTGQEAL 227 (425)
T ss_dssp SEEEEEEE-GGGTTHHH
T ss_pred ceEEEEEe-ccchHHHH
Confidence 66677788 55665544
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-06 Score=88.44 Aligned_cols=35 Identities=26% Similarity=0.514 Sum_probs=30.1
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
..++++++++++| +.|+||+|+|||||++.+++..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 3577788888887 8899999999999999999843
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-06 Score=93.17 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=43.1
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEeCcCC-CCCHHHHHHHHHHHHHHhCC
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILDEATS-ALDSRSELLVRQAVDRLLGH 376 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililDEpts-~LD~~~~~~i~~~l~~~~~~ 376 (382)
.-+|+|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+.+..++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~ 240 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD 240 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999999997 89988776777777665543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.8e-06 Score=85.74 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=35.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~ 253 (382)
++.+++++|++||||||++..|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999998888998765553
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.7e-06 Score=82.34 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=42.3
Q ss_pred CCCChHHHHHHHHHHHccCCCCEEEEe-CcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 326 SSLSGGQRQRLAIARALYQNSSVLILD-EATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 326 ~~lSgGq~QrialaRall~~~~ililD-Epts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+..+++.+|
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~pii 284 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFL 284 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEE
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEE
Confidence 468999999887 66666777788999 9999999998888888887765455443
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.8e-07 Score=87.14 Aligned_cols=125 Identities=18% Similarity=0.172 Sum_probs=70.5
Q ss_pred CccceeeEEeeCCC------EEEEECCCCCcHHHHHHHHhhCCCC--CCceEEEcCEeCCCCCHHHHhcceEEecCCCcc
Q 016798 203 LVLDQLNLHIRAGE------TVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274 (382)
Q Consensus 203 ~~l~~isl~i~~G~------~~aivG~sGsGKSTl~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 274 (382)
..|++++..+.+++ ++||+|||||||||++++|.+++.+ ++|. ++++++|.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f~ 134 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGGB
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeecccc
Confidence 35666776666665 8999999999999999999999873 4444 4455555554
Q ss_pred ccccHHHHHc----CCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcc-cccCCCCCCCChHHHHHHHHHHHccCCCCEE
Q 016798 275 FSGTVAENIG----YRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLAIARALYQNSSVL 349 (382)
Q Consensus 275 f~~ti~eNi~----~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gld-t~vge~G~~lSgGq~QrialaRall~~~~il 349 (382)
++....+... +|.|. ..+.+.+.+.+ ..+.+|-+ ..+ -.+|.+..+|+.-+...+..|+|+
T Consensus 135 ~~~~~l~~~~~~~~~g~P~-~~D~~~l~~~L---------~~L~~g~~~v~~----P~yd~~~~~r~~~~~~~v~~~dIV 200 (321)
T 3tqc_A 135 YSNAKLEKQGLMKRKGFPE-SYDMPSLLRVL---------NAIKSGQRNVRI----PVYSHHYYDIVRGQYEIVDQPDIV 200 (321)
T ss_dssp CCHHHHHHTTCGGGTTSGG-GBCHHHHHHHH---------HHHHTTCSSEEE----EEEETTTTEEEEEEEEEECSCSEE
T ss_pred cchhhhhhHHHHhhccCcc-cccHHHHHHHH---------Hhhhcccccccc----chhhhhccccccCceeeccCCCEE
Confidence 4433222211 22221 23444433333 22223321 100 012222233433334566789999
Q ss_pred EEeCcCCCCCH
Q 016798 350 ILDEATSALDS 360 (382)
Q Consensus 350 ilDEpts~LD~ 360 (382)
|+|.+..-.|.
T Consensus 201 IvEGi~lL~~~ 211 (321)
T 3tqc_A 201 ILEGLNILQTG 211 (321)
T ss_dssp EEECTTTTCCC
T ss_pred EEEcccccccc
Confidence 99987766554
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.06 E-value=9.2e-06 Score=78.07 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=69.4
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHH
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi 283 (382)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....+.| .|++=+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V-------------------l~fSlE------------ 83 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV-------------------AVFSLE------------ 83 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE-------------------EEEESS------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-------------------EEEeCC------------
Confidence 4666666799999999999999999999988876543322233 332211
Q ss_pred cCCCCCCCCCHHHHHH----HHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCC
Q 016798 284 GYRDLMTKIDMERVEH----TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~----~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD 359 (382)
.+.+++.. ....+.+..+.. ..||.+++||++.|...+.+++++|.|+|..++|
T Consensus 84 --------ms~~ql~~Rlls~~~~v~~~~l~~--------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 84 --------MSAEQLALRALSDLTSINMHDLES--------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp --------SCHHHHHHHHHHHHHCCCHHHHHH--------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred --------CCHHHHHHHHHHHhhCCCHHHHhc--------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 22333322 112223333221 2699999999999999999999999999875543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.97 E-value=1.3e-06 Score=89.35 Aligned_cols=79 Identities=22% Similarity=0.247 Sum_probs=48.4
Q ss_pred EeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecC
Q 016798 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ 270 (382)
Q Consensus 191 ~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q 270 (382)
+++..+|.. ..+++++++++ +|+.+.|+||+|+|||||+++|++...+..|.|.++|......-....++.+++.+|
T Consensus 87 ~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~ 163 (543)
T 3m6a_A 87 EKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPG 163 (543)
T ss_dssp HHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------
T ss_pred HHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCch
Confidence 444444432 24678888888 899999999999999999999999999999999888754322111223455777766
Q ss_pred CC
Q 016798 271 DI 272 (382)
Q Consensus 271 ~~ 272 (382)
..
T Consensus 164 ~~ 165 (543)
T 3m6a_A 164 RI 165 (543)
T ss_dssp CH
T ss_pred HH
Confidence 54
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2e-06 Score=74.56 Aligned_cols=41 Identities=34% Similarity=0.489 Sum_probs=33.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc--eEEEcCEeCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDHDVQ 254 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G--~i~~~g~~~~ 254 (382)
++|++++|+|++||||||+++.|.+.++| .| .+.+|+..+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998866 56 6777765553
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.92 E-value=1.4e-06 Score=84.03 Aligned_cols=52 Identities=21% Similarity=0.125 Sum_probs=46.4
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~ 254 (382)
.+++++++.+++|.+++|+|++|+|||||++.|++.+.+.+|+|.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4788999999999999999999999999999999999888888887666653
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=6.3e-06 Score=82.05 Aligned_cols=68 Identities=25% Similarity=0.395 Sum_probs=42.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCC------------CCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHH
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYD------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAEN 282 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eN 282 (382)
-+++|+|++|+|||||++.|+|... |.+|.+.++|.++.-++....++...+.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3799999999999999999999853 6789999999877555555555555666666655543 34444
Q ss_pred H
Q 016798 283 I 283 (382)
Q Consensus 283 i 283 (382)
+
T Consensus 261 i 261 (439)
T 1mky_A 261 I 261 (439)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.89 E-value=5.5e-06 Score=70.98 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=28.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
.|++++|+|++||||||++++|++.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 5789999999999999999999998754 55654
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.86 E-value=4.6e-06 Score=75.72 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=33.0
Q ss_pred ccceeeEEee---CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEc
Q 016798 204 VLDQLNLHIR---AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249 (382)
Q Consensus 204 ~l~~isl~i~---~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~ 249 (382)
-|+++|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 3677777776 8999999999999999999999999988 7777654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3.3e-06 Score=76.93 Aligned_cols=70 Identities=21% Similarity=0.262 Sum_probs=44.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---hCCCCCCceE--------EEcCEeCCCCC-HHHHhcceEEec------CCCccc
Q 016798 214 AGETVALIGPSGGGKSTLAKLLL---RLYDPLSGCI--------LVDDHDVQNIR-LDSLRRHVGLVS------QDITLF 275 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~---g~~~~~~G~i--------~~~g~~~~~~~-~~~~r~~i~~v~------Q~~~lf 275 (382)
..-+++|+||+||||||+.+.|+ |+...+.|.+ .-+|.++.+.. ..++.+.+.+.+ |+.+++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 34589999999999999999998 5444556665 23566655432 334455555555 334444
Q ss_pred cccHHHHH
Q 016798 276 SGTVAENI 283 (382)
Q Consensus 276 ~~ti~eNi 283 (382)
...|.++|
T Consensus 88 g~~v~~~i 95 (233)
T 3r20_A 88 GEDVSSEI 95 (233)
T ss_dssp TEECTTGG
T ss_pred Ceehhhhh
Confidence 54666665
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=2.7e-06 Score=75.89 Aligned_cols=44 Identities=32% Similarity=0.280 Sum_probs=38.5
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc--eEEEcCEeC
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDHDV 253 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G--~i~~~g~~~ 253 (382)
+.+++|.+++|+|++||||||+++.|.+.+.|..| .+.+++.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45778999999999999999999999999987888 888876544
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=6.3e-06 Score=79.66 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=36.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~ 255 (382)
+++.+++|+|++|||||||++.|.|.+.|.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4678999999999999999999999998999999887766543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.7e-05 Score=70.55 Aligned_cols=131 Identities=17% Similarity=0.144 Sum_probs=70.5
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccc-cHHHHHcCCCCCC
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMT 290 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~ 290 (382)
+.+|+.+.++||+||||||++.+++.......|. ...+.++.+.|..... ++.+|+......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~- 135 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE- 135 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC-
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc-
Confidence 4579999999999999999888764321111111 1346777777775433 677777421110
Q ss_pred CCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCC---CCChHHHHHHHHHHHccCCCCEEEEeCcCC-CCCHHHHHHH
Q 016798 291 KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGS---SLSGGQRQRLAIARALYQNSSVLILDEATS-ALDSRSELLV 366 (382)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~---~lSgGq~QrialaRall~~~~ililDEpts-~LD~~~~~~i 366 (382)
... ..++.. ...+......+. --..|+-.+. .+..+++-+++|+||+-. ++|.......
T Consensus 136 ~~~--------~~~g~~-------~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 136 EPG--------KSCGYS-------VRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp CTT--------SSEEEE-------ETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred ccC--------ceEEEe-------echhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHH
Confidence 000 000000 000111110111 1234655554 344689999999999976 5777666445
Q ss_pred HHHHHHHhCC
Q 016798 367 RQAVDRLLGH 376 (382)
Q Consensus 367 ~~~l~~~~~~ 376 (382)
.+.+....++
T Consensus 199 l~~i~~~~~~ 208 (235)
T 3llm_A 199 LRDVVQAYPE 208 (235)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHhhCCC
Confidence 5555444443
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1e-05 Score=77.16 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=26.1
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-+++|+.+.|.||+|||||||+..++.-.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58999999999999999999999888653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=5.3e-06 Score=73.00 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=39.2
Q ss_pred EEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh----CCC----CCCceEEEcCEeC
Q 016798 194 SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR----LYD----PLSGCILVDDHDV 253 (382)
Q Consensus 194 ~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g----~~~----~~~G~i~~~g~~~ 253 (382)
+|+|++- ..+++++|++.+++ +++++|++|+|||||++.+.+ .+. ++.+.+.++|..+
T Consensus 6 ~~~~~~~-~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSGF-SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp --------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHH-HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 4567754 35899999998887 589999999999999999986 233 3456777777544
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.75 E-value=8e-05 Score=70.75 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=64.7
Q ss_pred CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHH
Q 016798 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (382)
Q Consensus 203 ~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 282 (382)
+.|+++.--+++|+.+.|.|++|+|||||+.-++.-..- .| ..+.|++=+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE----------- 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE----------- 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS-----------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC-----------
Confidence 357777766999999999999999999998877743211 01 123333322
Q ss_pred HcCCCCCCCCCHHHHHHHHH----HcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCC
Q 016798 283 IGYRDLMTKIDMERVEHTAR----TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357 (382)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~----~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~ 357 (382)
.+.+++..-+. ...+.++. .|- ..||.+++||++-|...+.++++++.|+|...
T Consensus 106 ---------~s~~~l~~R~~~~~~~i~~~~l~----~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 106 ---------MGKKENIKRLIVTAGSINAQKIK----AAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp ---------SCHHHHHHHHHHHHTTCCHHHHH----SCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred ---------CCHHHHHHHHHHHHcCCCHHHHh----cCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 12333322211 12222221 010 12888899999998888888889988888644
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.75 E-value=5.1e-06 Score=73.66 Aligned_cols=29 Identities=34% Similarity=0.494 Sum_probs=26.3
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
..+|..++|+|||||||||+++.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998774
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0001 Score=71.10 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=25.9
Q ss_pred CCC--EEEEECCCCCcHHHHHHHHhhCCCCC
Q 016798 214 AGE--TVALIGPSGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 214 ~G~--~~aivG~sGsGKSTl~~ll~g~~~~~ 242 (382)
.+. .+.|.||+|+||||+++.+++...+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 456 89999999999999999999988765
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.3e-05 Score=77.57 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=46.3
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE-EEcCEeCCCCCHHHHhcceEEecCCCcc
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-LVDDHDVQNIRLDSLRRHVGLVSQDITL 274 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 274 (382)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.+.. +. .+.+++++.+|+..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSLLI 118 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGCEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhhhh
Confidence 488999999999999999999999999988888876 56654322 22 244567877765443
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.70 E-value=1.1e-05 Score=76.13 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++.+++|+|++|+|||||++.|+|.-
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44489999999999999999999863
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00022 Score=66.54 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++..+.|.||+|+||||+++.+++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 367889999999999999999999855
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.62 E-value=3.6e-05 Score=67.06 Aligned_cols=49 Identities=27% Similarity=0.434 Sum_probs=29.2
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh----CCCC----CCceEEEcCEeC
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR----LYDP----LSGCILVDDHDV 253 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g----~~~~----~~G~i~~~g~~~ 253 (382)
+++++|++.++. +++++|++|+|||||++.+.+ .+.| +.+.+.++|..+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 788999988777 789999999999999999997 3333 345666776543
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=3.8e-05 Score=64.82 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=24.5
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
++.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3455566554 89999999999999999987
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.59 E-value=4e-05 Score=65.71 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++|.+++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.58 E-value=1e-05 Score=76.34 Aligned_cols=47 Identities=23% Similarity=0.176 Sum_probs=41.7
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~ 255 (382)
++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 677766 99999999999999999999999999889999988777643
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.55 E-value=3.7e-06 Score=80.58 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=50.2
Q ss_pred CccceeeEEeeCCCE--EEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC-CCHHHHhcceEEec
Q 016798 203 LVLDQLNLHIRAGET--VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-IRLDSLRRHVGLVS 269 (382)
Q Consensus 203 ~~l~~isl~i~~G~~--~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~-~~~~~~r~~i~~v~ 269 (382)
.+++.++..++.|+. +.+.||+|+||||+++++++.+.+..+.+.+.+.+..+ ...+.+|+.+..++
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~ 101 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA 101 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHH
Confidence 488999999999998 99999999999999999999987777665555444433 23445555444333
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=4.9e-05 Score=66.10 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=26.7
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 207 ~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999876
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.47 E-value=3.3e-05 Score=67.15 Aligned_cols=40 Identities=33% Similarity=0.402 Sum_probs=33.6
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE-EEcC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-LVDD 250 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i-~~~g 250 (382)
..++|..+.|+|++||||||+++.|++.+.+..|.+ .+++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345799999999999999999999999988777776 4554
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=7.8e-05 Score=65.74 Aligned_cols=29 Identities=48% Similarity=0.700 Sum_probs=24.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
+++|+|++||||||+.+.|+++ |...+|+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 6899999999999999999983 5555554
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0002 Score=71.27 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+..+.|.||+|+|||||++.+++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999765
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00035 Score=63.11 Aligned_cols=29 Identities=31% Similarity=0.420 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCce
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGC 245 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~ 245 (382)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 58999999999999999999977665553
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.37 E-value=5.5e-05 Score=66.60 Aligned_cols=35 Identities=20% Similarity=0.477 Sum_probs=28.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~ 253 (382)
..+++|+|++||||||+++.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999999876 4566665443
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=9.9e-06 Score=71.04 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|+|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00019 Score=67.94 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
.+..+.|.||+|+|||||++.+++.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4568999999999999999999987744
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=1.5e-05 Score=77.35 Aligned_cols=58 Identities=26% Similarity=0.230 Sum_probs=36.3
Q ss_pred CCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 185 ~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
.+.+.+++++..|.. ..++++++|+| +|+|++|+|||||++.|++...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 456888898887764 35789999987 99999999999999999987666555554443
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.31 E-value=5.6e-05 Score=69.35 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=33.3
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~ 253 (382)
..+++..+.|+|++||||||+.+.|...+. .|.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456788999999999999999999998875 25677776544
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00012 Score=71.57 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=33.9
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhC-----------CCCCCceEEEcCE
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRL-----------YDPLSGCILVDDH 251 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~-----------~~~~~G~i~~~g~ 251 (382)
.+..|.+++|||++|+|||||++.|.|. ..|..|.+.+++.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4568899999999999999999999998 6778888887653
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00026 Score=59.87 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00012 Score=70.18 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=26.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~ 242 (382)
+++..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 468899999999999999999999987654
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00013 Score=63.35 Aligned_cols=38 Identities=34% Similarity=0.318 Sum_probs=29.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCC---CceEEEcCEe
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHD 252 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~---~G~i~~~g~~ 252 (382)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3689999999999999999999886543 3677776544
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00019 Score=63.12 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++|+|++||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00018 Score=61.87 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+++-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00022 Score=63.22 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=24.1
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
.+.++++.+ ...+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 344555555 499999999999999999885
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00019 Score=65.59 Aligned_cols=48 Identities=27% Similarity=0.401 Sum_probs=33.2
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCC
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~ 255 (382)
.++++++..++| +.|+||+|+||||+++.+++.+... -+.+++.++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~ 83 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVE 83 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHH
Confidence 344455555555 9999999999999999999987532 47778776644
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00018 Score=70.16 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=40.1
Q ss_pred eEEEEeCCCCCCccceeeEEe---eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEc
Q 016798 192 NISFKYADNMPLVLDQLNLHI---RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249 (382)
Q Consensus 192 ~v~f~y~~~~~~~l~~isl~i---~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~ 249 (382)
.+.+.+.....+++-|. +.. ..+..++|+|+|||||||+++.+++.+.+..+.|.+-
T Consensus 10 G~~~G~~~~g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 10 GIVLGKDRDGGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CEEEEECTTSCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccEEEEeCCCCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 34444443333454444 222 2678899999999999999999998887788888763
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00021 Score=61.60 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+++|+|++|+|||||++.+++...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999996433
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0021 Score=63.87 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=31.5
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5676665699999999999999999999988876554
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=8e-05 Score=71.73 Aligned_cols=37 Identities=38% Similarity=0.509 Sum_probs=33.6
Q ss_pred CccceeeEEeeCCCE--EEEECCCCCcHHHHHHHHhhCC
Q 016798 203 LVLDQLNLHIRAGET--VALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 203 ~~l~~isl~i~~G~~--~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 368889999999999 9999999999999999999865
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00034 Score=59.87 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.|..+.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998664
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00027 Score=60.98 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998543
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00012 Score=69.73 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=29.7
Q ss_pred ccceeeEEeeCC--CEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 204 VLDQLNLHIRAG--ETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 204 ~l~~isl~i~~G--~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++.+.-.+..| ..+.|.||+|+||||+++.+++.+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 556666556666 4599999999999999999998764
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00055 Score=63.18 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=32.4
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
|++|||||..+|+++++|||| |.++...+ ++....++|++
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~~~g~~vl 127 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRAAETGHLVF 127 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHHHTTCEEE
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHHccCCEEE
Confidence 899999999999999999999 98876544 44444577765
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00037 Score=60.83 Aligned_cols=31 Identities=35% Similarity=0.461 Sum_probs=26.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
..+++|+|++||||||+.+.|... |-..+|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 457999999999999999999986 6666654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00013 Score=64.43 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~ 242 (382)
+++|+|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988654
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00047 Score=58.38 Aligned_cols=23 Identities=35% Similarity=0.280 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++|+|++||||||+++.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00095 Score=57.57 Aligned_cols=36 Identities=33% Similarity=0.495 Sum_probs=27.6
Q ss_pred EEEEECCCCCcHHHHHHHHh-hC----CCCCCc----eEEEcCEe
Q 016798 217 TVALIGPSGGGKSTLAKLLL-RL----YDPLSG----CILVDDHD 252 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~-g~----~~~~~G----~i~~~g~~ 252 (382)
+++|+|++|+|||||++.++ +- +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 58999999999999997555 44 567766 66677654
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00055 Score=61.82 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++|.+++|+|++||||||+.+.|++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999863
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00061 Score=58.70 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|.++.|.|++||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0018 Score=59.78 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=25.0
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++++..+.|.||+|+||||+++.++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4677889999999999999999998865
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0017 Score=62.16 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=30.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~ 251 (382)
.+|..+.|.||+|+||||+++.++.........+.+++.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 456789999999999999999999887644344555443
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00067 Score=63.48 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=28.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
+|..+.|+|||||||||+.+.|+.-++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999987653 35677765
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00067 Score=58.44 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999998655
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00082 Score=58.68 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|..++|.|++||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999877
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00088 Score=59.46 Aligned_cols=24 Identities=42% Similarity=0.455 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
++.+++|+|++||||||+++.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999998
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00064 Score=58.79 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998654
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00077 Score=56.85 Aligned_cols=19 Identities=47% Similarity=0.758 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 016798 217 TVALIGPSGGGKSTLAKLL 235 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll 235 (382)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00053 Score=58.93 Aligned_cols=27 Identities=33% Similarity=0.319 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++..+.|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998544
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00062 Score=64.45 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=29.3
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
.+++..+++ .|.-++|+|+||+||||++..|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 567777777 899999999999999999999887
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00072 Score=59.22 Aligned_cols=44 Identities=36% Similarity=0.656 Sum_probs=32.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC-------------CCCCceEEEcCEeCCCCCHHHHh
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY-------------DPLSGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~-------------~~~~G~i~~~g~~~~~~~~~~~r 262 (382)
.+.|+||||||||||++.|+.-+ +|..|++ ||++..-++.++..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~ 59 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFK 59 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHH
Confidence 37899999999999999887543 2345654 77777666666554
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00077 Score=57.87 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=27.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC----CCCCCc----eEEEcCE
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL----YDPLSG----CILVDDH 251 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~----~~~~~G----~i~~~g~ 251 (382)
-+++++|++|+|||||++.+.+- +.|+.| .+.+++.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~ 60 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF 60 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCE
Confidence 47999999999999999999976 345666 4555543
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0015 Score=63.19 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=30.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhh-----------CCCCCCceEEEcC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLR-----------LYDPLSGCILVDD 250 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g-----------~~~~~~G~i~~~g 250 (382)
|-+++|||.+|+|||||++.|.+ -..|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56799999999999999999998 3357778887765
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0011 Score=58.31 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++|.+++|.|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=57.73 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+|..++|.|++||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999986654
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0065 Score=60.19 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=28.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEE
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~ 248 (382)
++.+++++|++|+||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 56789999999999999999999888655445544
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0029 Score=63.01 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhh
Q 016798 216 ETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g 237 (382)
-+++|||++|+|||||++.|.|
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3799999999999999999987
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.001 Score=57.59 Aligned_cols=27 Identities=22% Similarity=0.521 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998655
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.001 Score=56.81 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0012 Score=58.12 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.2
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++|.+++|+|++||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998643
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.001 Score=60.90 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++|+||+|||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998765
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00097 Score=62.60 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=31.2
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
+.++++..+.|.||+|+||||+++.+++... .+.+.+++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 4568899999999999999999999998763 34455543
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.001 Score=57.37 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=23.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~ 242 (382)
..++|+|++|||||||+..|++.+.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 479999999999999999999877543
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0014 Score=55.74 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhh
Q 016798 216 ETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g 237 (382)
..+.|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00053 Score=59.61 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=25.4
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.+++.+++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999998765
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0016 Score=56.19 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++..++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997654
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0013 Score=56.31 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=18.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++..+.|.|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999998554
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0018 Score=55.73 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
++.|.|++||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=62.32 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=26.2
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
+++..+++.+ ...+|+|||||||||++.+|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4666777766 589999999999999999886
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0023 Score=56.83 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++|..+.|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998765
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0022 Score=56.05 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0044 Score=51.65 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
.++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0027 Score=55.45 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.+++|+|+.||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998755
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.014 Score=55.95 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++...+.|.||+|+||||+++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999999765
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.012 Score=57.84 Aligned_cols=29 Identities=31% Similarity=0.266 Sum_probs=24.8
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.=++.+.+.|+|++||||||+.+.|+.-+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34567899999999999999999998654
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0022 Score=55.81 Aligned_cols=22 Identities=55% Similarity=0.616 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999764
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0019 Score=60.22 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=28.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~ 247 (382)
...+.|+||+|+||||+++.+++...+.+|.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 357999999999999999999999877766543
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0026 Score=56.20 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|.|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997654
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0025 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998654
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0026 Score=56.81 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++..+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456889999999999999999998654
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0024 Score=54.84 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.+++|+|++||||||+.+.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999998654
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0024 Score=58.89 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998753
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0028 Score=52.74 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.011 Score=58.71 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=28.3
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 35555445899999999999999999998776643
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.003 Score=53.42 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998644
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.003 Score=61.23 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|||++|+|||||++.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999863
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0029 Score=54.35 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.-.++++|++|+|||||++.+.+-..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34799999999999999999998653
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0046 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0014 Score=61.31 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=19.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0031 Score=53.14 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998744
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0025 Score=56.63 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998655
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0042 Score=59.51 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=25.9
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988875
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0033 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998853
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0029 Score=55.93 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997655
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0029 Score=55.23 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+..+++|.|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998655
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0034 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0032 Score=55.23 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-.++|+|.+||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998763
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0033 Score=54.15 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0034 Score=52.71 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0027 Score=52.94 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++++|++|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 589999999999999999987543
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0025 Score=54.75 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.+++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998654
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0032 Score=52.06 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998653
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0035 Score=51.94 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0034 Score=57.19 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999997643
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0038 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0037 Score=52.24 Aligned_cols=23 Identities=52% Similarity=0.564 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998643
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0038 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0039 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999888643
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0046 Score=52.11 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++.-+++++|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35668999999999999999999863
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0039 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999988643
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0036 Score=52.17 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0041 Score=52.37 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0037 Score=56.71 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++-.++|.|++||||||+.+.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998655
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0076 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0038 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0044 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+++++|++|+|||||++.+.|-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5799999999999999999987653
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0044 Score=54.05 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=23.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~ 242 (382)
..+.|.||+|+|||||++.++......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999876543
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0035 Score=55.64 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
++..+.|.||+|+||||+++.++..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999876643
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0039 Score=52.54 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0033 Score=57.99 Aligned_cols=23 Identities=43% Similarity=0.509 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+++||++|+|||||++.|++--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987643
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0037 Score=53.70 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
--.++++|++|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999875
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0046 Score=51.44 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
.++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0043 Score=57.50 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0043 Score=56.82 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0039 Score=53.33 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-+++++|++|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998764
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0049 Score=58.88 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=24.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++..+.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998763
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0047 Score=52.98 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999976
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0048 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0049 Score=52.97 Aligned_cols=22 Identities=45% Similarity=0.578 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0049 Score=52.50 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++|+|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0043 Score=57.67 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhh
Q 016798 215 GETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g 237 (382)
..+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0063 Score=51.95 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0052 Score=50.99 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0053 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhh
Q 016798 215 GETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g 237 (382)
.-.++++|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999975
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0057 Score=51.50 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0072 Score=53.34 Aligned_cols=35 Identities=31% Similarity=0.303 Sum_probs=28.2
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+...-+++ .|..+.|+||||+|||||+..|+.-.
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 456655554 78899999999999999999887643
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0055 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998643
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0046 Score=52.73 Aligned_cols=23 Identities=39% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998753
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0051 Score=51.69 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0059 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0054 Score=57.63 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++|||++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999985
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0077 Score=49.86 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=26.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCce
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~ 245 (382)
+.+.-+.|.||+|+|||++++.|........+.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~ 54 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGE 54 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCC
Confidence 456779999999999999999999876543333
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0059 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.006 Score=51.63 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999863
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0055 Score=54.35 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|-.+.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0062 Score=51.41 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0056 Score=54.07 Aligned_cols=25 Identities=40% Similarity=0.515 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.+++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0059 Score=55.55 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-.++|+|++|+|||||++.|+|-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999754
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0059 Score=58.39 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=22.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
..++|+||||||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999997764
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.007 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.011 Score=50.03 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999983
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.007 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0064 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0061 Score=55.82 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999874
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0072 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999854
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0071 Score=53.11 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-.++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0072 Score=52.26 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0068 Score=57.04 Aligned_cols=24 Identities=42% Similarity=0.434 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-+++|+|++|+|||||++.|.|--
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999853
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0078 Score=56.89 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+..++|+||||||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0041 Score=52.76 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
+.-+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999874
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0072 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998655
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0084 Score=50.76 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
..+..+.|+||+|+||||+++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999987653
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0037 Score=62.33 Aligned_cols=43 Identities=30% Similarity=0.391 Sum_probs=32.8
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~ 247 (382)
+++.+ +.+-+|++++|+|++|+|||||++.|++......|.|.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 34444 67789999999999999999999999876543333333
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0075 Score=51.70 Aligned_cols=23 Identities=39% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0094 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhh
Q 016798 216 ETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g 237 (382)
-+++++|++|+|||||++.+.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999987
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0078 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.007 Score=52.11 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0076 Score=52.18 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0068 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998755
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0071 Score=51.98 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
.++++|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 689999999999999999987
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0079 Score=50.91 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0077 Score=51.30 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=21.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++.=+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999999863
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0041 Score=54.83 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.-+++++|++|+|||||++.|++-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999864
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0068 Score=54.63 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=22.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.+|.++.+-|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999987664
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0089 Score=53.44 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=26.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
++|..+.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999988765
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0091 Score=53.54 Aligned_cols=26 Identities=38% Similarity=0.657 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+..+.|.|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0084 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.015 Score=50.10 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=25.1
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
++..-+ -..|.-+.|.|+||+||||++..|..
T Consensus 7 lHas~v-~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFL-VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEE-EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 343333 34789999999999999999987764
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0075 Score=52.32 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.=+++++|++|+|||||++.+.+-.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3478999999999999999998754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0086 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0037 Score=54.71 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=23.6
Q ss_pred cceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 205 l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
..|+.|.-..--+++++|++|+|||||++.+.+-
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 15 TENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3444443333347999999999999999999874
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0081 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
-+++++|++|+|||||++.+++-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.013 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.39 E-value=0.01 Score=50.09 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
-=+++++|++|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 447999999999999999999864
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0081 Score=51.62 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998644
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0088 Score=53.30 Aligned_cols=28 Identities=39% Similarity=0.470 Sum_probs=24.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.+|.++.+-|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999987664
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0079 Score=55.56 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0081 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-.++++|++|+|||||++.|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999988764
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0079 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0092 Score=54.66 Aligned_cols=23 Identities=35% Similarity=0.327 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0096 Score=51.21 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0096 Score=51.04 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
.++++|+.|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0095 Score=51.83 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
=.++++|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999854
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0096 Score=53.97 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+|.++.+.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987664
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0099 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
=.++++|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0098 Score=50.83 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0099 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.=+++++|++|+|||||++.+.+-.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34478999999999999999998643
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0092 Score=50.98 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhh
Q 016798 215 GETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g 237 (382)
.=+++++|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999984
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.009 Score=51.91 Aligned_cols=22 Identities=41% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0098 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++++|++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999988554
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.01 Score=54.62 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=23.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCCCce
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~~G~ 245 (382)
.+++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876544443
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0088 Score=55.91 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.++|+|+.|+|||||++.|+|..-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 599999999999999999998753
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0092 Score=51.85 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0093 Score=54.58 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.++|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0098 Score=55.25 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
..+.|+|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999873
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0098 Score=56.47 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998763
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0082 Score=50.66 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998863
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0084 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.011 Score=52.69 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+|.++.+-|++||||||.++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987664
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0073 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
=+++++|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998654
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0096 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.|+|--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.011 Score=50.66 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|++|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999988875
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.011 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|+|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0097 Score=53.59 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+|..++|.|..||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999997663
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.011 Score=53.10 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=24.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.+|..+.+.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999987654
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.01 Score=57.20 Aligned_cols=36 Identities=31% Similarity=0.480 Sum_probs=29.2
Q ss_pred ccceeeEE---eeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 204 VLDQLNLH---IRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 204 ~l~~isl~---i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.|+.+ +. +++|+.+.|.|++|+|||||+..++....
T Consensus 50 ~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 50 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45555 33 88999999999999999999988776543
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.012 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.=+++++|++|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998853
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.071 Score=52.64 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCC-CceEEE
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILV 248 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~ 248 (382)
+..+++++|++|+||||+..-|+..+.-. .-+|.+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVll 134 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV 134 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 45689999999999999999888766543 224443
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.011 Score=52.02 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.01 Score=50.11 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=24.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
..+..+.|+||+|+||||+++.++..+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34667899999999999999999877643
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.01 Score=54.97 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++++|++|+|||||++.|.|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999865
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.017 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
-+++++|++|+|||||++.+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.06 E-value=0.011 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0098 Score=53.21 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=25.9
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-+.++..++.|+||.||||+|..+.|+.-|
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345677889999999999999999999766
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0076 Score=55.12 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++..++|.|+.||||||+++.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5788999999999999999999987763
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.012 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
...+.|+||+|||||||...|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999987653
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.008 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=9.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.015 Score=52.60 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++...+.|.||+|+||||+++.++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345568899999999999999998754
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.013 Score=50.25 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.012 Score=50.91 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhh
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
++.=+++++|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999975
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=94.90 E-value=0.0045 Score=61.27 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=29.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD 252 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~ 252 (382)
..+++++|++|+||||++..|++.+.....+|.+-..|
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 35899999999999999999999886554556654333
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.015 Score=51.60 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.019 Score=51.29 Aligned_cols=25 Identities=40% Similarity=0.636 Sum_probs=22.4
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
+++|+.+.|.|++|+|||||+.-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999986543
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.0047 Score=56.40 Aligned_cols=31 Identities=42% Similarity=0.625 Sum_probs=23.9
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++....++| +.|.||+|+||||+++.+++.
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 3334444445 889999999999999999874
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.013 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|+|++|+|||||++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999888653
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.015 Score=54.77 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=24.8
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhh
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
-+++|+.+.|.|++|+|||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999988775
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.0073 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+++-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988853
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.016 Score=50.49 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhh
Q 016798 215 GETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g 237 (382)
.=+++++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34789999999999999988874
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.016 Score=50.29 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999754
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.0036 Score=60.37 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=39.7
Q ss_pred CCChHHHHHHHHHHHcc-CCCCEEEEeC---cC------CCCCHHHHHHHHHHHHHHhC--CCcee
Q 016798 327 SLSGGQRQRLAIARALY-QNSSVLILDE---AT------SALDSRSELLVRQAVDRLLG--HHTVR 380 (382)
Q Consensus 327 ~lSgGq~QrialaRall-~~~~ililDE---pt------s~LD~~~~~~i~~~l~~~~~--~~TvI 380 (382)
.+|+|++||..++++.. .+|++++||| |+ +++|......+.+.|+++.+ +.+++
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~il 323 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYI 323 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCE
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEE
Confidence 45677788888888875 5999999999 65 68999999999999987654 56655
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.019 Score=50.75 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++|+|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.021 Score=49.98 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=26.8
Q ss_pred cceeeEEeeCCC---EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 205 LDQLNLHIRAGE---TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 205 l~~isl~i~~G~---~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
++.+.-.+..|+ .+.|.||+|+||||+++.++..+.
T Consensus 32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 333333344454 799999999999999999987664
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.011 Score=50.50 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
+.=.++++|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 344799999999999999999864
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.016 Score=56.54 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
..++|+||||||||||...|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998665
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.018 Score=54.12 Aligned_cols=26 Identities=35% Similarity=0.714 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++-+++++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45679999999999999999987653
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.02 Score=50.40 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
=+++++|++|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999998864
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=94.51 E-value=0.0084 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=4.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++++|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988765
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.021 Score=55.15 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++..++++|++|+|||||++.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5788999999999999999999987
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.022 Score=49.65 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.024 Score=50.06 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
|+++++=|.-||||||++++|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999997764
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.026 Score=52.39 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+-.++++|.+|+|||||++.|.|-...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCcee
Confidence 347899999999999999999987643
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.024 Score=49.10 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCcHHHHH-HHHhhC
Q 016798 214 AGETVALIGPSGGGKSTLA-KLLLRL 238 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~-~ll~g~ 238 (382)
+|.++.+.||.||||||++ +++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5889999999999999997 555444
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.022 Score=55.01 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++..++++|++|+|||||++.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 67899999999999999999999864
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.029 Score=52.07 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++..+.|.||+|+||||+++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45568999999999999999888665
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.025 Score=54.30 Aligned_cols=27 Identities=30% Similarity=0.243 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
.-+++|+|+.|+|||||++.|++.+..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999876643
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.15 Score=58.98 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=30.9
Q ss_pred Cccceee--EEeeCCCEEEEECCCCCcHHHHHHHHhh
Q 016798 203 LVLDQLN--LHIRAGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 203 ~~l~~is--l~i~~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
+.|+++. .-+++|+.+.+.||+|||||||+..+.-
T Consensus 1067 ~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1067 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678887 5799999999999999999999998773
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=93.95 E-value=0.027 Score=53.94 Aligned_cols=26 Identities=46% Similarity=0.776 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++..+.|.||+|+||||+++.|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34567889999999999999999877
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.025 Score=57.01 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=25.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
+.|-.+.++|.+||||||+.++|+.-+.-
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999987754
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.033 Score=49.22 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
++.|.||.||||+|..+.|+.-|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999997763
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.052 Score=49.28 Aligned_cols=37 Identities=30% Similarity=0.404 Sum_probs=28.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCc-eEEEc
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVD 249 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G-~i~~~ 249 (382)
+.+..+.|.||+|+|||++++.+........+ -+.++
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 35678999999999999999999988764433 34444
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.027 Score=55.58 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|||++|+|||||++.|.|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999998753
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.037 Score=52.31 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+..-+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 456789999999999999999999865
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.029 Score=54.19 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=24.9
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-+++|+.+.|.||+|+|||||+.-++.-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47899999999999999999997766443
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.036 Score=47.89 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.|.||.|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998754
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.70 E-value=0.03 Score=49.60 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=25.4
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++...+.+.||.|+||||++..|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 6777789999999999999999999886
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.031 Score=53.23 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=24.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
..+..+.|.||+|+||||+++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999987763
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.032 Score=57.17 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+|.++.|.|.+||||||+.+.|...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999987653
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.033 Score=54.43 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|||++++|||||++.|.|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999754
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=93.58 E-value=0.024 Score=54.25 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+++||+.|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999854
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.026 Score=56.28 Aligned_cols=45 Identities=29% Similarity=0.351 Sum_probs=32.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC----CCCC--------ceEEEcCEeCCCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY----DPLS--------GCILVDDHDVQNIR 257 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~----~~~~--------G~i~~~g~~~~~~~ 257 (382)
+.|=+++|+|++|+|||||++.|+|-- .+.. ..+.++|.++.=++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liD 278 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLD 278 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEE
Confidence 345569999999999999999998742 2222 35777887654333
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.036 Score=57.27 Aligned_cols=39 Identities=33% Similarity=0.389 Sum_probs=28.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCC-CceEEEcCEe
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHD 252 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~-~G~i~~~g~~ 252 (382)
+|.++.|+|.+||||||+.+.|...+... -..+.+||..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 46789999999999999999998765211 1245555433
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=93.57 E-value=0.026 Score=49.58 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=31.7
Q ss_pred HHHHHHHHccCCCCEEEEeCcCC-----CCCHHHHHHHHHHHHHHh
Q 016798 334 QRLAIARALYQNSSVLILDEATS-----ALDSRSELLVRQAVDRLL 374 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts-----~LD~~~~~~i~~~l~~~~ 374 (382)
=.-.|++.+..+|.....++|+. .+|....+++.+.+++..
T Consensus 165 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
T 3gj0_A 165 PFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQ 210 (221)
T ss_dssp HHHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhh
Confidence 34478899999999888887766 788888888887776654
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.013 Score=50.87 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
+.=+++++|++|+|||||++.+.+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 344789999999999999987764
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.024 Score=56.32 Aligned_cols=37 Identities=38% Similarity=0.557 Sum_probs=28.7
Q ss_pred ceeeEEeeCCCE--EEEECCCCCcHHHHHHHHhhCCCCC
Q 016798 206 DQLNLHIRAGET--VALIGPSGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 206 ~~isl~i~~G~~--~aivG~sGsGKSTl~~ll~g~~~~~ 242 (382)
+.+.-.++.|+. +.|.||+|+||||+++.|+......
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 344444555664 8999999999999999999887543
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.04 Score=52.22 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=25.5
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
--+++|..+.|.||.|+|||||+..++.-
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 36888999999999999999999988753
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.035 Score=50.72 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++...+.|.||+|+||||+++.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455679999999999999999998753
|
| >3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.016 Score=56.22 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=29.2
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 207 ~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
|.=+.|-+|++.+|+|++|+|||||+..|+...
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 555788999999999999999999999888754
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.041 Score=50.76 Aligned_cols=26 Identities=35% Similarity=0.695 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+..+.|.||+|+||||+++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999987663
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=93.41 E-value=0.044 Score=50.98 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++...+.|.||+|+|||+|++.++..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344568888999999999999999876
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.0089 Score=51.77 Aligned_cols=23 Identities=39% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++++|++|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999887643
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=93.26 E-value=0.051 Score=51.11 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+..-+.|.||+|+|||++++.++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 356679999999999999999998654
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.098 Score=50.50 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=30.3
Q ss_pred HHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCcee
Q 016798 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVR 380 (382)
Q Consensus 335 rialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI 380 (382)
+.+|+++|..+|+++++|||| |.++. ..+++....+++++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~~~~g~~vi 238 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRAAETGHLVF 238 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHHHTTTCEEE
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHHHhcCCEEE
Confidence 569999999999999999999 76653 34455554566665
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=93.14 E-value=0.05 Score=52.00 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=26.8
Q ss_pred ceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 206 ~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
..+.++++---.++|||.+++|||||++.|.+-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 345566666567999999999999999999864
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.057 Score=50.73 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+.-+.|.||+|+|||+|+++++....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987654
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.053 Score=48.81 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-..||.|+.||||||+.+.|+.-|
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 382 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-75 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-72 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-63 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-63 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-61 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-53 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-37 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-37 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-33 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-33 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-33 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 9e-31 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-30 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-29 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-29 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-28 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-26 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-26 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-24 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-12 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 2e-09 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 9e-08 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 3e-04 | |
| d1rz3a_ | 198 | c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci | 7e-04 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 9e-04 | |
| d1m8pa3 | 183 | c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d | 0.001 | |
| d1lvga_ | 190 | c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu | 0.002 | |
| d1x6va3 | 195 | c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin | 0.004 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 0.004 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 232 bits (593), Expect = 2e-75
Identities = 96/208 (46%), Positives = 126/208 (60%), Gaps = 2/208 (0%)
Query: 172 VIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTL 231
+ A ++ G + ++SF+Y DN +L +NL I GETVA +G SGGGKSTL
Sbjct: 1 IKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTL 60
Query: 232 AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK 291
L+ R YD SG IL+D H++++ SLR +GLV QD LFS TV ENI
Sbjct: 61 INLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG--RPT 118
Query: 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351
E V A+ ANA +F+ LPQGY+T +G RG LSGGQ+QRL+IAR N +LIL
Sbjct: 119 ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILIL 178
Query: 352 DEATSALDSRSELLVRQAVDRLLGHHTV 379
DEATSALD SE ++++A+D L T
Sbjct: 179 DEATSALDLESESIIQEALDVLSKDRTT 206
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 223 bits (570), Expect = 5e-72
Identities = 96/199 (48%), Positives = 128/199 (64%), Gaps = 1/199 (0%)
Query: 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240
+D GD++F N++F Y L +NL I AG+TVAL+G SG GKST+A L+ R YD
Sbjct: 7 IDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 66
Query: 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHT 300
G IL+D HD++ L SLR V LVSQ++ LF+ TVA NI Y + E++E
Sbjct: 67 IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY-ARTEEYSREQIEEA 125
Query: 301 ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360
AR A A +F+ + G +T IG G LSGGQRQR+AIARAL ++S +LILDEATSALD+
Sbjct: 126 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 185
Query: 361 RSELLVRQAVDRLLGHHTV 379
SE ++ A+D L + T
Sbjct: 186 ESERAIQAALDELQKNRTS 204
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 201 bits (512), Expect = 1e-63
Identities = 85/193 (44%), Positives = 125/193 (64%), Gaps = 2/193 (1%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
D+ F NI F+Y + P++LD +NL I+ GE + ++G SG GKSTL KL+ R Y P +G +
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA 306
L+D HD+ + LRR VG+V QD L + ++ +NI + +E+V + A+ A A
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI--SLANPGMSVEKVIYAAKLAGA 118
Query: 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366
+F+ L +GYNT +G +G+ LSGGQRQR+AIARAL N +LI DEATSALD SE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 367 RQAVDRLLGHHTV 379
+ + ++ TV
Sbjct: 179 MRNMHKICKGRTV 191
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 200 bits (511), Expect = 3e-63
Identities = 84/196 (42%), Positives = 113/196 (57%), Gaps = 2/196 (1%)
Query: 183 HINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241
H+ G V+F ++SF Y + LVL L +R GE AL+GP+G GKST+A LL LY P
Sbjct: 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 66
Query: 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA 301
G +L+D + L R V V Q+ +F ++ ENI Y L K ME + A
Sbjct: 67 TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAY-GLTQKPTMEEITAAA 125
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+ A F+ LPQGY+T + GS LSGGQRQ +A+ARAL + VLILD+ATSALD+
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 362 SELLVRQAVDRLLGHH 377
S+L V Q + +
Sbjct: 186 SQLQVEQLLYESPERY 201
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 196 bits (499), Expect = 2e-61
Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 2/188 (1%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ F Y D+ +L ++ + +A GPSGGGKST+ LL R Y P +G I +D
Sbjct: 6 HVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVR 311
+ NI L++ R +G VSQD + +GT+ EN+ Y L E + A A FV
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTY-GLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 312 TLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD 371
+P NT +G RG +SGGQRQRLAIARA +N +L+LDEAT++LDS SE +V++A+D
Sbjct: 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 372 RLLGHHTV 379
L+ T
Sbjct: 184 SLMKGRTT 191
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 176 bits (447), Expect = 2e-53
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 20/214 (9%)
Query: 165 LTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPS 224
+ KV + +V F ++ VL +NL+I GE +A+ G +
Sbjct: 16 FGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLNIEKGEMLAITGST 71
Query: 225 GGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG 284
G GK++L L+L + G I V SQ + GT+ ENI
Sbjct: 72 GSGKTSLLMLILGELEASEGIIKHSGR-------------VSFCSQFSWIMPGTIKENII 118
Query: 285 YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344
+ D R + + + + + NT +G G +LSGGQR R+++ARA+Y+
Sbjct: 119 FGV---SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYK 175
Query: 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHT 378
++ + +LD LD +E V ++ L +
Sbjct: 176 DADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK 209
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 132 bits (333), Expect = 4e-37
Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 20/196 (10%)
Query: 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246
+VK N++ ++ + +++LNL I+ GE + L+GPSG GK+T +++ L +P G I
Sbjct: 6 EVKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 247 LVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTA 301
D D L R++ +V Q ++ TV ENI + + K +RV A
Sbjct: 64 YFGDRD--VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 302 RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361
+E + P + LSGGQRQR+A+ARA+ VL++DE S LD++
Sbjct: 122 ELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 362 SELLVRQAVDRLLGHH 377
+ +R + +L
Sbjct: 171 LRVAMRAEIKKLQQKL 186
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 131 bits (331), Expect = 6e-37
Identities = 58/194 (29%), Positives = 96/194 (49%), Gaps = 12/194 (6%)
Query: 188 VKFCNISFKYADNMPL--VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+K N++ Y + L +NL+I+ GE V+++GPSG GKST+ ++ L P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 246 ILVDDHDVQNIRLDSLRR----HVGLVSQDITLFSG-TVAENIGY-RDLMTKIDMERVEH 299
+ +D+ ++ D L + +G V Q L T EN+ + M E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
R + L + + H + + LSGGQ+QR+AIARAL N +++ D+ T ALD
Sbjct: 122 RKRALECLKMAE-LEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 360 SRSELLVRQAVDRL 373
S++ + Q + +L
Sbjct: 178 SKTGEKIMQLLKKL 191
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 122 bits (307), Expect = 1e-33
Identities = 38/192 (19%), Positives = 81/192 (42%), Gaps = 19/192 (9%)
Query: 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248
+ ++S Y VL+++ + I G V GP+G GK+TL K + PL G I+
Sbjct: 4 EIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 60
Query: 249 DDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANAD 307
+ + ++ + + ++I + +V + + + + N +
Sbjct: 61 NGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK----------VNKN 105
Query: 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367
E + L + + LS G +R+ +A L N+ + +LD+ A+D S+ V
Sbjct: 106 EIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 165
Query: 368 QAVDRLLGHHTV 379
+++ +L +
Sbjct: 166 KSILEILKEKGI 177
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 122 bits (307), Expect = 3e-33
Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 21/200 (10%)
Query: 188 VKFCNISFKYADNMPLV--LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245
+K NI+ + + L+ ++LH+ AG+ +IG SG GKSTL + + L P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 246 ILVDDHDVQNI---RLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKID----MERV 297
+LVD ++ + L RR +G++ Q L S TV N+ + RV
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ + P S+LSGGQ+QR+AIARAL N VL+ DEATSA
Sbjct: 122 TELLSLVGLGDKHDSYP-----------SNLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 358 LDSRSELLVRQAVDRLLGHH 377
LD + + + + +
Sbjct: 171 LDPATTRSILELLKDINRRL 190
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 122 bits (307), Expect = 4e-33
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 21/184 (11%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ +Y + VL ++L RAG+ +++IG SG GKST + + L P G I+V+
Sbjct: 7 DLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQ 64
Query: 252 DVQNIR-------------LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERV 297
++ +R L LR + +V Q L+S TV EN+ + + +
Sbjct: 65 NINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL-GLSKH 123
Query: 298 EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357
+ R V + + LSGGQ+QR++IARAL VL+ DE TSA
Sbjct: 124 DARERALKYLAKVGIDERAQGKYP----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 179
Query: 358 LDSR 361
LD
Sbjct: 180 LDPE 183
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 115 bits (288), Expect = 9e-31
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 27/195 (13%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
+++ L L+ +RAGE + L+GP+G GKSTL + + G I
Sbjct: 8 DVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQ 60
Query: 252 DVQNIRLDSLRRHVGLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
++ L H +SQ T F+ V + + D R E A A
Sbjct: 61 PLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLH----QHDKTRTELLNDVAGA---- 112
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ-------NSSVLILDEATSALDSRSE 363
+ +G + LSGG+ QR+ +A + Q +L+LDE ++LD +
Sbjct: 113 ----LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQ 168
Query: 364 LLVRQAVDRLLGHHT 378
+ + + L
Sbjct: 169 SALDKILSALCQQGL 183
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 113 bits (284), Expect = 5e-30
Identities = 50/199 (25%), Positives = 91/199 (45%), Gaps = 22/199 (11%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
V+ ++ + + + +++L ++ GE + L+GPSG GK+T +++ L +P G I
Sbjct: 4 VRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 248 VDDHDVQNIRLDSLRR----HVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVE 298
+ D V + + +V Q L+ TV +NI + + K+ +RV
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
A E + P LSGGQRQR+A+ RA+ + V ++DE S L
Sbjct: 122 EVAELLGLTELLNRKP-----------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170
Query: 359 DSRSELLVRQAVDRLLGHH 377
D++ + +R + +L
Sbjct: 171 DAKLRVRMRAELKKLQRQL 189
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 111 bits (279), Expect = 3e-29
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 11/183 (6%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ + +L ++ I GE LIGP+G GK+T +++ L P SG + V
Sbjct: 7 DLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK 64
Query: 252 DVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFV 310
+ +R+ + + ++ + E + + +E A E
Sbjct: 65 N-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIE--EMVERATEIA 121
Query: 311 RTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370
G I R S+ S G ++L IARAL N + ILDE TS LD + VR+ +
Sbjct: 122 -----GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL 176
Query: 371 DRL 373
+
Sbjct: 177 KQA 179
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 110 bits (277), Expect = 4e-29
Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 20/195 (10%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
V+ N++ + + +V +NL I GE V +GPSG GKSTL +++ L SG +
Sbjct: 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGY----RDLMTKIDMERVEHTAR 302
+ + + + R VG+V Q L+ +VAEN+ + ++ +RV A
Sbjct: 59 IGEKRMND--TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116
Query: 303 TANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
+ P +LSGGQRQR+AI R L SV +LDE S LD+
Sbjct: 117 VLQLAHLLDRKP-----------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165
Query: 363 ELLVRQAVDRLLGHH 377
+ +R + RL
Sbjct: 166 RVQMRIEISRLHKRL 180
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 109 bits (274), Expect = 2e-28
Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 20/195 (10%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
NI + + LD +++ + G+ +IGP+G GKSTL ++ G + ++
Sbjct: 9 NIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK 66
Query: 252 DVQN-IRLDSLRRHVGLVSQDITLFSG-TVAENIGY-----------RDLMTKIDMERVE 298
D+ N + + Q TV EN+ K + E
Sbjct: 67 DITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 126
Query: 299 HTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358
+ EF+ + + LSGGQ + + I RAL N ++++DE + +
Sbjct: 127 MVEKAFKILEFL-----KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 359 DSRSELLVRQAVDRL 373
+ V L
Sbjct: 182 APGLAHDIFNHVLEL 196
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 105 bits (262), Expect = 5e-27
Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 18/192 (9%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
++ ++S K+ + LD L+L + +GE ++GP+G GK+ +L+ + P SG IL
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 248 VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKI-DMERVEHTARTAN 305
+D DV + L + + V Q+ +LF V +N+ + M KI D +RV TAR
Sbjct: 59 LDGKDVTD--LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 306 ADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365
+ + P +LSGG++QR+A+ARAL N +L+LDE SALD R++
Sbjct: 117 IEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 366 VRQAVDRLLGHH 377
R+ + L +
Sbjct: 166 AREMLSVLHKKN 177
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 104 bits (261), Expect = 1e-26
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 11/173 (6%)
Query: 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
++ Y + ++L + G+ V LIG +G GK+T + L G I+ +
Sbjct: 11 SLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ 68
Query: 252 DVQNIR-LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEF 309
D+ N R + LV + +F TV EN+ K
Sbjct: 69 DITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW------- 121
Query: 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362
+ +L + G +LSGG++Q LAI RAL +L++DE + L
Sbjct: 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 103 bits (257), Expect = 3e-26
Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 19/198 (9%)
Query: 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247
+ N+S + + LD +N++I GE ++GPSG GK+T +++ L P +G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 248 VDDHDVQNIRLDSLR---RHVGLVSQDITLFSG-TVAENIG----YRDLMTKIDMERVEH 299
DD V + + R +G+V Q L+ T ENI + + +RVE
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 300 TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359
A+ + + P LSG Q+QR+A+ARAL ++ S+L+LDE S LD
Sbjct: 124 VAKILDIHHVLNHFP-----------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
Query: 360 SRSELLVRQAVDRLLGHH 377
+R R V +
Sbjct: 173 ARMRDSARALVKEVQSRL 190
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 97.8 bits (243), Expect = 3e-24
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 207 QLNLHIRAG-ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265
+LN+ G + L+GP+G GKS +L+ + P G + ++ D+ L RR +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGI 72
Query: 266 GLVSQDITLFSGTVAEN---IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322
G V QD LF G R++ RV A + P
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-------- 124
Query: 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377
+ LSGG+RQR+A+ARAL +L+LDE SA+D +++ ++ + + +
Sbjct: 125 ---ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF 176
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 63.1 bits (152), Expect = 2e-12
Identities = 16/162 (9%), Positives = 34/162 (20%), Gaps = 31/162 (19%)
Query: 218 VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277
+ + G G GK+TL K ++ + ++ + + R + + S
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 278 TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337
+ + A
Sbjct: 63 FFTSKKLVGSY-------------------------------GVNVQYFEELAIPILERA 91
Query: 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTV 379
A V+I+DE + + V
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNV 133
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 56.1 bits (133), Expect = 2e-09
Identities = 30/166 (18%), Positives = 72/166 (43%), Gaps = 1/166 (0%)
Query: 1 MATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAIL 60
+ M S LS+I ++ P +++ I + +R R ISK ++ ++ ++L
Sbjct: 147 LFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHK 206
Query: 61 FVKANNAEMCESARFRRLAHSDLCELLKKRKMKALI-PQTVQLIYFGALFILCGGSLLVS 119
V + E+ RF ++++ + +K ++ P + F+L S
Sbjct: 207 EVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSV 266
Query: 120 GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDL 165
S ++ +S++ ++ P++ + +F++G A + LF +
Sbjct: 267 MDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAI 312
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 51.1 bits (120), Expect = 9e-08
Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 1/127 (0%)
Query: 40 QSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKK-RKMKALIPQ 98
+ ++A + +L+E + I VK+ E E+ F + + L LK R
Sbjct: 191 ERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAA 250
Query: 99 TVQLIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPA 158
+ G + ++ G+ L GS +L +F+ L + P++ + ++ Q +
Sbjct: 251 INTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFAS 310
Query: 159 IERLFDL 165
++R+F L
Sbjct: 311 MDRVFQL 317
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 2e-07
Identities = 22/152 (14%), Positives = 37/152 (24%), Gaps = 5/152 (3%)
Query: 218 VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277
V L GP G GK+TL + + + + V +S S
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 278 TVAENI----GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333
E R +D+ E A + G + + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVL-RNADCSSGPGQRVCVIDEIGKMELFSQ 122
Query: 334 QRLAIARALYQNSSVLILDEATSALDSRSELL 365
+ R +IL L+
Sbjct: 123 LFIQAVRQTLSTPGTIILGTIPVPKGKPLALV 154
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.2 bits (90), Expect = 3e-04
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251
G V L GPS GKST+ + L L +
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTR 38
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 38.2 bits (87), Expect = 7e-04
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 205 LDQLNLHIRAGET-----VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253
+D L I A +T + + G S GK+TLA L + + V D
Sbjct: 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 37.6 bits (86), Expect = 9e-04
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250
G + L G G GKST+A+ L L DD
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 39
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Score = 37.4 bits (85), Expect = 0.001
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 215 GETVALIGPSGGGKSTLAKLLLR 237
G T+ L G GK +A+ L
Sbjct: 6 GFTIFLTGYMNSGKDAIARALQV 28
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.5 bits (83), Expect = 0.002
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 218 VALIGPSGGGKSTLAKLLLRLYDPL 242
V L GPSG GKSTL K L + + +
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSI 27
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.004
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255
G TV L G SG GK+T++ L D D
Sbjct: 19 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 59
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.7 bits (81), Expect = 0.004
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 218 VALIGPSGGGKSTLAKLLLRLYD 240
+ + GPSG GKSTL K L Y
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYP 26
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.73 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.72 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.66 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.64 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.06 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.71 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.46 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.39 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.96 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.65 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.59 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.5 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.47 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.45 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.44 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.31 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.25 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.25 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.25 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.22 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.2 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.2 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.19 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.17 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.17 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.15 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.14 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.14 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.13 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.09 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.04 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.0 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.93 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.92 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.88 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.88 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.85 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.84 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.81 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.8 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.79 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.68 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.66 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.64 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.63 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.62 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.62 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.61 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.61 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.59 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.59 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.57 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.56 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.53 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.53 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.53 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.51 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.51 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.48 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.48 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.43 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.41 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.4 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.4 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.4 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.39 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.39 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.37 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.37 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.36 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.34 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.33 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.3 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.24 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.24 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.23 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.22 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.19 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.19 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.17 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.16 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.15 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.14 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.1 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.08 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.05 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 96.04 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.0 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.93 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.93 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.92 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.88 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.87 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.8 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.74 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.73 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.73 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.71 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.62 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.61 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.58 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.55 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.54 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.53 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.53 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.53 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.52 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.52 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.49 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.49 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.47 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.47 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.45 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.43 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.41 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.41 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.41 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.4 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.39 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.36 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.34 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.33 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.3 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.29 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.29 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.27 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.27 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.26 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.26 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.25 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.23 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.2 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.2 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.17 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.17 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.17 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.16 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.15 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.14 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.11 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.1 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.06 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.06 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.05 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.04 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.03 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.02 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.02 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.97 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.91 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.86 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 94.85 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.8 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.79 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 94.79 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.77 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.76 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.75 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 94.74 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.62 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.61 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.54 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.5 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.49 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.46 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.45 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.45 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.39 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.39 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.33 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.32 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.32 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 94.31 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.3 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.3 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.21 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 94.15 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.11 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.1 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.07 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.07 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 94.04 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 93.99 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.96 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.91 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.9 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.88 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.78 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.77 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 93.64 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.58 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.54 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.53 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.5 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.48 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 93.31 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.1 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.96 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.67 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.63 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.42 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.37 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 91.97 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.76 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.72 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.71 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 91.66 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 91.61 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 91.45 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 91.25 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.19 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.13 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 90.93 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 90.88 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 90.79 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 90.65 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.24 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 89.99 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 89.8 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 89.7 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.39 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 89.38 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 89.36 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.31 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 89.1 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 88.51 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 88.24 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 88.23 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 87.66 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 86.8 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 86.05 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 85.88 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.88 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 85.83 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 85.69 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 85.32 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 84.74 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 83.61 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 83.53 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.43 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 83.37 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 83.17 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 82.33 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 82.1 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.53 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.31 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 81.22 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 80.18 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=5.1e-63 Score=458.39 Aligned_cols=199 Identities=48% Similarity=0.717 Sum_probs=190.5
Q ss_pred CCCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH
Q 016798 181 LDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS 260 (382)
Q Consensus 181 ~~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 260 (382)
.+...++|+|+||+|+|+++.+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+++.++
T Consensus 10 l~~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 10 IEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHH
Confidence 33346789999999999987778999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+|++|+||+|+|++|++||+|||+++++ ..++++++++++.+++++++..+|+||||.+|++|.+|||||||||||||
T Consensus 90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~--~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167 (255)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHGGGCS--SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred hhheeeeeeccccCCCCCHHHHHhccCc--CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHH
Confidence 9999999999999999999999999876 45799999999999999999999999999999999999999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
||+++|+|||||||||+||++++..|.+.|+++.+++|+|+
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~ 208 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLI 208 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEE
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999999999999984
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-62 Score=450.51 Aligned_cols=193 Identities=44% Similarity=0.719 Sum_probs=186.7
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
+|+|+||||+|+++.+++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|++|+
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence 48999999999877778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCC
Q 016798 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (382)
Q Consensus 267 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~ 346 (382)
||||+|++|++||+|||.++.+ ..++++++++++.+++.+++..+|+|++|.++++|.+|||||||||||||||+++|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p 158 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 158 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTST--TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEecccccCCccccccccccCc--cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence 9999999999999999999875 46799999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 347 SVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 347 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
+|||||||||+||+.+++.|.+.|+++.+++|+|+
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~ 193 (241)
T d2pmka1 159 KILIFDEATSALDYESEHVIMRNMHKICKGRTVII 193 (241)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred chhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999985
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.2e-61 Score=447.78 Aligned_cols=199 Identities=48% Similarity=0.712 Sum_probs=190.1
Q ss_pred CCCCCcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH
Q 016798 182 DHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL 261 (382)
Q Consensus 182 ~~~~~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~ 261 (382)
+...|+|+|+||||+|++++.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||.++.+++..++
T Consensus 8 ~~~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~ 87 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87 (253)
T ss_dssp SCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CCCceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhh
Confidence 34567899999999999777789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 262 RRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 262 r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
|++|+||+|+|++|++|+++|+.++.+. ..++++++++++.+++.++++.+|+||+|.++++|.+||||||||||||||
T Consensus 88 r~~i~~v~Q~~~l~~~ti~~n~~~~~~~-~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa 166 (253)
T d3b60a1 88 RNQVALVSQNVHLFNDTVANNIAYARTE-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166 (253)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTTTS-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred hheEEEEeeccccCCcchhhhhhhcCcc-cCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999998643 468999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|+++|+|||||||||+||+.+++.|++.|+++.+++|+|+
T Consensus 167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~ 206 (253)
T d3b60a1 167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 206 (253)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEE
Confidence 9999999999999999999999999999999999999874
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1e-60 Score=440.54 Aligned_cols=192 Identities=40% Similarity=0.648 Sum_probs=183.5
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||||+|+++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.+++|++|+|
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 7899999999864 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCC
Q 016798 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (382)
Q Consensus 268 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ 347 (382)
|||+|++|++||+||+.++.. ...++++++++++.+++.+++..+|+|++|.+|++|.+|||||||||||||||+++|+
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLE-GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTT-SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EccccccCCcchhhheecccc-cccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999988753 2467899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCceec
Q 016798 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVRE 381 (382)
Q Consensus 348 ililDEpts~LD~~~~~~i~~~l~~~~~~~TvI~ 381 (382)
|||||||||+||+.+++.|++.|+++.+++|+|+
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~ 193 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLV 193 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEE
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999985
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-59 Score=434.07 Aligned_cols=197 Identities=42% Similarity=0.637 Sum_probs=184.7
Q ss_pred CCCcEEEEeEEEEeCCC-CCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHh
Q 016798 184 INGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262 (382)
Q Consensus 184 ~~~~i~~~~v~f~y~~~-~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r 262 (382)
..+.|+|+||||+|++. +.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+.+++..++|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred ccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHH
Confidence 45789999999999864 34699999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
++|+||+|+|++|++||+||+.++... ..+++++.++++.+++.+++..+|+|++|.++++|.+||||||||+||||||
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQ-KPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSS-CCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHhhhccccccccCcchhhhhhhhhcc-cchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence 999999999999999999999998542 3567888999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+++|+|+|||||||+||+.++..|++.|+++.+ ++|+|+
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~ 207 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLL 207 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEE
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEE
Confidence 999999999999999999999999999998764 678874
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.3e-50 Score=367.53 Aligned_cols=184 Identities=32% Similarity=0.467 Sum_probs=158.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCC---HHHHhc
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSLRR 263 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~r~ 263 (382)
.|+++||+++|+.++..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+ ...+|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 58999999999765557899999999999999999999999999999999999999999999999997655 344578
Q ss_pred ceEEecCCCccccc-cHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 016798 264 HVGLVSQDITLFSG-TVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (382)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qrial 338 (382)
+||||+|+|.+|+. ||+||+.++......+.+ ++.++++.+++.++.++. ..+||||||||++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------p~~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-----------PRELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHHHH
T ss_pred cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCC-----------hhhCCHHHHhHHHH
Confidence 89999999999976 999999987544445543 456666666665555444 47899999999999
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||||+.+|++||+||||++||+.+...+++.|+++.+ +.|+|+
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~ 196 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEE
T ss_pred HhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEE
Confidence 9999999999999999999999999999999999843 678764
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.1e-49 Score=361.89 Aligned_cols=180 Identities=32% Similarity=0.512 Sum_probs=149.8
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+|+...+.. |++||
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceEE
Confidence 5999999999975 4699999999999999999999999999999999999999999999999999987754 57899
Q ss_pred EecCCCcccc-ccHHHHHcCCCCCCCCCHHHH----HHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 016798 267 LVSQDITLFS-GTVAENIGYRDLMTKIDMERV----EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (382)
Q Consensus 267 ~v~Q~~~lf~-~ti~eNi~~~~~~~~~~~~~~----~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRa 341 (382)
||||++.+|+ .||+||+.++....+.+.++. .++++.+++.++ ......+||||||||++||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL-----------LNRYPAQLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGG-----------TTSCTTTCCSSCHHHHHHHHH
T ss_pred EEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHhh
Confidence 9999999996 499999998765555565443 445555555444 344558999999999999999
Q ss_pred ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 342 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|+.+|+|||||||||+||+.+...+++.|+++.+ +.|+|+
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~ 192 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 192 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred hccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999999999999999999843 778774
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9.2e-50 Score=362.89 Aligned_cols=184 Identities=32% Similarity=0.472 Sum_probs=150.5
Q ss_pred EEEEeEEEEeCCCCC--CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHH----
Q 016798 188 VKFCNISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL---- 261 (382)
Q Consensus 188 i~~~~v~f~y~~~~~--~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~---- 261 (382)
|+++||+++|+.++. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++..++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 789999999975442 37999999999999999999999999999999999999999999999999999987765
Q ss_pred hcceEEecCCCccccc-cHHHHHcCCCC---CCCCCHHH----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHH
Q 016798 262 RRHVGLVSQDITLFSG-TVAENIGYRDL---MTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (382)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eNi~~~~~---~~~~~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~ 333 (382)
|++||||+|+|.+|+. ||+||+.++.. ....+.++ +.+.++.+++.+ ........+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE----------RFANHKPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCG----------GGTTCCGGGSCHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhh----------hhhcCChhhCCHHHH
Confidence 3579999999999865 99999986321 11233332 233334433322 112233478999999
Q ss_pred HHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 334 QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
||++|||||+.+|++||||||||+||+.++..|++.|+++.+ +.|+|+
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~ 201 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV 201 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 999999999999999999999999999999999999999853 677764
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-49 Score=362.48 Aligned_cols=179 Identities=33% Similarity=0.502 Sum_probs=127.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+.. |++|||
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEE
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceeee
Confidence 689999999975 4699999999999999999999999999999999999999999999999999887753 678999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
|||+|.+|+. |++||+.++......+ ++++.++++.+++.++.++.| .+||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred eccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999966 9999999875433332 345778888888887776655 78999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
+.+|++|+|||||++||+.+...+++.|+++. .++|+|+
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~ 186 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 186 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999999999999999999999974 3778774
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.5e-49 Score=360.59 Aligned_cols=178 Identities=34% Similarity=0.550 Sum_probs=155.2
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
|+++|||++|++ .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+++.. |++|||
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEeCC---EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhccee
Confidence 789999999964 489999999999999999999999999999999999999999999999999987754 678999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCC-CCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
|+|++.+|+. ||+||+.++..... .+.+++.++++..++.++.++ ...+||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----------NPLTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-----------CGGGSCHHHHHHHHHHHHTTSC
T ss_pred eccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhC-----------ChhhCCHHHhcchhhhhhhhcc
Confidence 9999999965 99999986532111 246678888888777655444 3478999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~TvI~ 381 (382)
|++||||||||+||+.+...+++.|+++. .+.|+|.
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~ 183 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 99999999999999999999999999974 3667763
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.4e-50 Score=376.98 Aligned_cols=176 Identities=30% Similarity=0.456 Sum_probs=158.0
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
..|.|+|++| .+ +|+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 37 ~~i~~~~~~~--~g--~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i 99 (281)
T d1r0wa_ 37 NNVSFSHLCL--VG--NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RV 99 (281)
T ss_dssp ---CHHHHHH--TT--CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CE
T ss_pred CcEEEEEcCC--CC--CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EE
Confidence 3566666554 32 4799999999999999999999999999999999999999999999988 49
Q ss_pred EEecCCCccccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCC
Q 016798 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (382)
Q Consensus 266 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~ 345 (382)
+|+||++++|++||+||+.++.. .++.++..+++.+.+.+++..+|++++|.++++|.+||||||||++|||||+++
T Consensus 100 ~~v~Q~~~l~~~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~ 176 (281)
T d1r0wa_ 100 SFCSQFSWIMPGTIKENIIFGVS---YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 176 (281)
T ss_dssp EEECSSCCCCSEEHHHHHTTTSC---CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEeccccccCceeecccccccc---ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999863 467888999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHH-HHHHhCCCceec
Q 016798 346 SSVLILDEATSALDSRSELLVRQA-VDRLLGHHTVRE 381 (382)
Q Consensus 346 ~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~TvI~ 381 (382)
|+|||||||||+||+.++..+.+. +..+.+++|+|+
T Consensus 177 p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~ 213 (281)
T d1r0wa_ 177 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 213 (281)
T ss_dssp CSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEE
T ss_pred ccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 999999999999999999998876 555567888874
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.1e-49 Score=359.89 Aligned_cols=183 Identities=33% Similarity=0.455 Sum_probs=156.5
Q ss_pred EEEEeEEEEeCCCCC--CccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH---Hh
Q 016798 188 VKFCNISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR 262 (382)
Q Consensus 188 i~~~~v~f~y~~~~~--~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r 262 (382)
|+++||+++|+.+.. .+|+||||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.+++..+ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999986532 4799999999999999999999999999999999999999999999999999888664 46
Q ss_pred cceEEecCCCccccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
++||||||++.+|+. ||+||+.++......+ .+++.++++.+++.++.++ ...+||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~-----------~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSS-----------CBSCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 789999999999976 9999998642111222 3556777887777654443 34799999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||+.+|++||+||||++||+.+...|++.|+++.+ +.|+|.
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~ 196 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL 196 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEE
Confidence 99999999999999999999999999999999999753 677764
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.2e-49 Score=360.41 Aligned_cols=182 Identities=28% Similarity=0.454 Sum_probs=155.6
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHH----Hh
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS----LR 262 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~----~r 262 (382)
.|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred cEEEEeEEEEECC--EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccc
Confidence 4899999999975 46999999999999999999999999999999999999999999999999997765443 36
Q ss_pred cceEEecCCCccccc-cHHHHHcCCCCCCCCCHH----HHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 016798 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (382)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~Qria 337 (382)
++||||+|+|.+|+. ||+||+.++......+.+ ++.++++.+++.++.++. ..+||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~-----------p~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK-----------PRELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-----------GGGSCHHHHHHHH
T ss_pred ccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHH
Confidence 789999999999976 999999875332333433 456677777766554443 4789999999999
Q ss_pred HHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 338 laRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
|||||+.+|++|||||||++||+.+...+++.|+++.+ +.|+|+
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~ 195 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY 195 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEE
Confidence 99999999999999999999999999999999999753 678774
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7.8e-46 Score=340.34 Aligned_cols=182 Identities=25% Similarity=0.353 Sum_probs=150.3
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc-ce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR-HV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~-~i 265 (382)
-|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.+..++ .+
T Consensus 6 ~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred EEEEeeEEEEECC--EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence 4899999999975 46999999999999999999999999999999999999999999999999999988776644 59
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCHHH----HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaR 340 (382)
+|+||++.+|+. |++||+.++.... .+.+. +.++++.. .+++........+||||||||++|||
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~LSGG~~Qrv~iAr 152 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRDLEWIFSLF----------PRLKERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTC-CCSSHHHHHHHHHHHHC----------HHHHTTTTSBSSSSCHHHHHHHHHHH
T ss_pred cccCcccccCCcccHHHHHHHHHHhc-CCHHHHHHHHHHHHHHh----------hChHHHHhCchhhCCHHHHHHHHHHH
Confidence 999999999976 9999997653211 12222 22232222 02222334455789999999999999
Q ss_pred HccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 341 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
||+.+|++|||||||++||+.+...+.+.|+++. +++|+|.
T Consensus 153 aL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~ 194 (240)
T d1ji0a_ 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILL 194 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999985 4577763
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.1e-46 Score=347.34 Aligned_cols=182 Identities=33% Similarity=0.448 Sum_probs=153.2
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH--------
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-------- 258 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~-------- 258 (382)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEEEEEEEECC--EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccc
Confidence 5899999999965 469999999999999999999999999999999999999999999999999865432
Q ss_pred -----HHHhcceEEecCCCccccc-cHHHHHcCCC-CCCCCCH----HHHHHHHHHcChHHHH-HhCCCCcccccCCCCC
Q 016798 259 -----DSLRRHVGLVSQDITLFSG-TVAENIGYRD-LMTKIDM----ERVEHTARTANADEFV-RTLPQGYNTHIGPRGS 326 (382)
Q Consensus 259 -----~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~-~~~~~~~----~~~~~~~~~~~l~~~i-~~lp~Gldt~vge~G~ 326 (382)
..+|++||||+|+|.+|+. |++||+.++. .....+. +.+.++++.+++.+.. .+.| .
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-----------~ 148 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-----------V 148 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------G
T ss_pred cHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc-----------c
Confidence 3467889999999999965 9999997641 1112232 4556677777776543 3333 6
Q ss_pred CCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCceec
Q 016798 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVRE 381 (382)
Q Consensus 327 ~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~TvI~ 381 (382)
+||||||||++|||||+.+|++|||||||++||+.+..+|++.|+++.+ ++|+|.
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~ 204 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVV 204 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEE
Confidence 8999999999999999999999999999999999999999999999864 577763
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.2e-46 Score=343.67 Aligned_cols=185 Identities=23% Similarity=0.288 Sum_probs=151.1
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhc-ce
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR-HV 265 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~-~i 265 (382)
-|+++|||++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.+.++ .|
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred eEEEEEEEEEECC--eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence 3799999999975 36999999999999999999999999999999999999999999999999999999887765 49
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCC-------------CC-HHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCCh
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTK-------------ID-MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~-------------~~-~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSg 330 (382)
+|+||+|.+|+. |++||+.++..... .. .+...++. +.++.+ |++........+|||
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAF------KILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHH------HHHHHT--TCGGGTTSBGGGSCH
T ss_pred CccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHH------HHHHhc--CcchhccCchhhCCc
Confidence 999999999865 99999987532111 01 11111111 122221 334334445678999
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~ 205 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI 205 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999999999999999985 4677763
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.5e-45 Score=337.91 Aligned_cols=186 Identities=26% Similarity=0.365 Sum_probs=153.6
Q ss_pred CcEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 186 ~~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
|.|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ ....+|+.+
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CCEEEEeEEEEECC--EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhhE
Confidence 46999999999975 469999999999999999999999999999999999999999999999999987 456789999
Q ss_pred EEecCCCccccc-cHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC
Q 016798 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (382)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~ 344 (382)
+||||++.+|+. |++||+.+.......+.+++.+..+.. ++.+ |++....+...+||||||||++|||||+.
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~~ 150 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMV 150 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred eEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHH-----HHhC--CCHHHHhhhhhhCCHHHHHHHHHHHHHhc
Confidence 999999999966 999999754322223444443333221 1111 33444445567999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 345 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+|++|||||||++||+.+.+.+.+.++++. +++|+|.
T Consensus 151 ~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~ 188 (238)
T d1vpla_ 151 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 188 (238)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999999999999999875 5678774
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.7e-44 Score=328.90 Aligned_cols=173 Identities=27% Similarity=0.466 Sum_probs=144.2
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
+++ ++..+|++- .+ ||||+++ +|+++|+||||||||||+++|+|+++|++|+|.++|+++.+++.. |++|||
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCcee
Confidence 456 567888642 23 7999995 689999999999999999999999999999999999999987754 788999
Q ss_pred ecCCCccccc-cHHHHHcCCCCCCCCCH----HHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHc
Q 016798 268 VSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (382)
Q Consensus 268 v~Q~~~lf~~-ti~eNi~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRal 342 (382)
|||++.+|+. ||+||+.|+.. ..+. +++.++++.+++.++ ......+||||||||++|||||
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~--~~~~~~~~~~v~~~l~~~gl~~~-----------~~~~~~~LSGG~kQRvaiAral 141 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLR--NVERVERDRRVREMAEKLGIAHL-----------LDRKPARLSGGERQRVALARAL 141 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCT--TSCHHHHHHHHHHHHHTTTCTTT-----------TTCCGGGSCHHHHHHHHHHHHH
T ss_pred eccchhhcccchhhHhhhhhhc--ccCHHHHHHHHHHHHHhcCcHhh-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 9999999975 99999999753 2333 334555555555444 3445589999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCceec
Q 016798 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVRE 381 (382)
Q Consensus 343 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~TvI~ 381 (382)
+.+|++|+||||||+||+.+...+++.|+++.+ +.|+|.
T Consensus 142 ~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~ 182 (240)
T d2onka1 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999753 677763
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=5.5e-44 Score=319.83 Aligned_cols=171 Identities=21% Similarity=0.374 Sum_probs=144.9
Q ss_pred cEEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceE
Q 016798 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (382)
Q Consensus 187 ~i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 266 (382)
.|+++||||+|+ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. .++.+++
T Consensus 2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred eEEEEEEEEEeC---CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehh-----HhcCcEE
Confidence 589999999994 25999999999999999999999999999999999999999999999999985 3678899
Q ss_pred EecCCCccccc-cHHHHHcCCCC--CCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHcc
Q 016798 267 LVSQDITLFSG-TVAENIGYRDL--MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (382)
Q Consensus 267 ~v~Q~~~lf~~-ti~eNi~~~~~--~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall 343 (382)
|+||++.++.. |+.||+.+... ....+++++.++++..++.+ ++. ...+||||||||++||||++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~----~~~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKK----KLGELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTS----BGGGSCHHHHHHHHHHHHTT
T ss_pred EEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc--------ccc----ccCcCCCcHHHHHHHHHHHh
Confidence 99999998855 99999863211 11345777777776655422 222 33579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCC
Q 016798 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHH 377 (382)
Q Consensus 344 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~ 377 (382)
.+|+++||||||++||+++++.+++.|.++.+++
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~ 175 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK 175 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999876543
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-40 Score=302.14 Aligned_cols=175 Identities=25% Similarity=0.341 Sum_probs=149.1
Q ss_pred EEEEeEEEEeCCCCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEE
Q 016798 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 188 i~~~~v~f~y~~~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
++++||+++| .|+||||+|++||++||+||||||||||+++|+|++ |++|+|.++|+++..++...++.+.+|
T Consensus 4 l~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~ 76 (231)
T d1l7vc_ 4 MQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAY 76 (231)
T ss_dssp EEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred EEEECcccCc------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhcee
Confidence 7899997543 699999999999999999999999999999999986 689999999999999999999999999
Q ss_pred ecCCCcc-ccccHHHHHcCCCCCCCCCHHHHHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccC--
Q 016798 268 VSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ-- 344 (382)
Q Consensus 268 v~Q~~~l-f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~-- 344 (382)
++|+... |..++++|+.++... ....+.+.++++..++ +..++....+||||||||++||||+++
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~l-----------~~~~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 77 LSQQQTPPFATPVWHYLTLHQHD-KTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp ECSCCCCCSSCBHHHHHHHHCSC-TTCHHHHHHHHHHTTC-----------TTTTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred eeccccCCccccHHHHhhhccch-hhHHHHHHHHHHhcCC-----------HhHhCcChhhcCHHHHHHHHHHHHHHhhC
Confidence 9999874 677999999876542 2345556666666554 344555667999999999999999997
Q ss_pred -----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCceec
Q 016798 345 -----NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVRE 381 (382)
Q Consensus 345 -----~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~TvI~ 381 (382)
+|+|+||||||++||+.+...+.+.|+++. +++|+|+
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~ 187 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM 187 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 779999999999999999999999999975 5677764
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.73 E-value=1.2e-16 Score=148.17 Aligned_cols=169 Identities=21% Similarity=0.350 Sum_probs=149.4
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+.+++++|.+++++++..|+.+++...+.++.++..++..+..++..+.+.|.++|+++||+++.|+.+.++|++..++.
T Consensus 154 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~ 233 (323)
T d2hyda2 154 SIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNF 233 (323)
T ss_dssp HHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+........... ..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+.+++++..+.+|
T Consensus 234 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~R 313 (323)
T d2hyda2 234 LTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666555544444433 34456777888999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccc
Q 016798 162 LFDLTKFKSK 171 (382)
Q Consensus 162 i~~~~~~~~~ 171 (382)
+.+++|.++|
T Consensus 314 i~elLd~e~e 323 (323)
T d2hyda2 314 VFQLIDEDYD 323 (323)
T ss_dssp HHHHHTCCCS
T ss_pred HHHHHCCCCC
Confidence 9999986653
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.72 E-value=1.4e-16 Score=147.40 Aligned_cols=169 Identities=19% Similarity=0.307 Sum_probs=150.1
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 016798 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (382)
Q Consensus 3 ~~l~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (382)
+++++++|.+++++++++|+..++.....++..+..++..+..++..+.+.|.++|++++|.++.|+.+.+++++..++.
T Consensus 149 ~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~ 228 (319)
T d3b60a2 149 IMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKM 228 (319)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016798 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (382)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r 161 (382)
.+...+..+............ .+..++++++|++++.+|.+|+|.++++..+...+..|+..++..+..++++.++.+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~R 308 (319)
T d3b60a2 229 RLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 308 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666655554444332 3445677888999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccc
Q 016798 162 LFDLTKFKSK 171 (382)
Q Consensus 162 i~~~~~~~~~ 171 (382)
+.+++|.++|
T Consensus 309 i~elld~~~E 318 (319)
T d3b60a2 309 LFAILDSEQE 318 (319)
T ss_dssp HHHHHHSCCS
T ss_pred HHHHhcCCCC
Confidence 9999987765
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.64 E-value=1.9e-17 Score=142.33 Aligned_cols=131 Identities=14% Similarity=0.064 Sum_probs=83.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCCCCCCHHH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~ 296 (382)
+++|+||||||||||++.|+|+++|..|.+..++.+....+.........+.++.+.++..+..++...++. ..+.+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY--GVNVQY 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--EECHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhh--hcCcch
Confidence 589999999999999999999999999999998877654332222222333344444444444333332221 111111
Q ss_pred HHHHHHHcChHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-
Q 016798 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG- 375 (382)
Q Consensus 297 ~~~~~~~~~l~~~i~~lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~- 375 (382)
..+|+|+++|.++++++.++|+++++|||+...+. ...+.+.+.+..+
T Consensus 80 -----------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~ 128 (178)
T d1ye8a1 80 -----------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHD 128 (178)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTC
T ss_pred -----------------------------hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchh--hHHHHHHHHHHhcc
Confidence 24789999999999999999999999998654332 2344455555443
Q ss_pred -CCcee
Q 016798 376 -HHTVR 380 (382)
Q Consensus 376 -~~TvI 380 (382)
+.|+|
T Consensus 129 ~~~~il 134 (178)
T d1ye8a1 129 PNVNVV 134 (178)
T ss_dssp TTSEEE
T ss_pred CCCEEE
Confidence 34544
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.06 E-value=2.6e-10 Score=109.58 Aligned_cols=50 Identities=32% Similarity=0.402 Sum_probs=42.7
Q ss_pred CCCChHHHHHHHHHHH----ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 016798 326 SSLSGGQRQRLAIARA----LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (382)
Q Consensus 326 ~~lSgGq~QrialaRa----ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 375 (382)
..+|||||.+++||-. .+.++|+++||||+++||+.+...+.+.|++...
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~ 384 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN 384 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC
Confidence 5679999999887643 3577899999999999999999999999988753
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.71 E-value=3.2e-08 Score=90.98 Aligned_cols=54 Identities=26% Similarity=0.323 Sum_probs=45.1
Q ss_pred CCCChHHHHHHHHHHH----ccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCce
Q 016798 326 SSLSGGQRQRLAIARA----LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTV 379 (382)
Q Consensus 326 ~~lSgGq~QrialaRa----ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~Tv 379 (382)
..+|+|||+...++.. ...+|+++++|||-++||+...+.+.+.|++..++.=+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~Qv 275 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQF 275 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEE
Confidence 4689999999877664 45567899999999999999999999999988765433
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=1.2e-07 Score=79.51 Aligned_cols=137 Identities=15% Similarity=0.003 Sum_probs=70.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHHHHHcCCCCC----CC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM----TK 291 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~----~~ 291 (382)
+.+.|+||+|+|||||++.+++.+....+.+.+.+.+........+......+.++...+.....++....... ..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYV 81 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccc
Confidence 46899999999999999999999987777776554433222211112223334444433322222222111100 01
Q ss_pred CCHHHHHHHHHHcChHHHHHh-CCCCcccccCCCCCCCChHHHHHHHHHHHccCCCCEEEE-eCc
Q 016798 292 IDMERVEHTARTANADEFVRT-LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL-DEA 354 (382)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~i~~-lp~Gldt~vge~G~~lSgGq~QrialaRall~~~~ilil-DEp 354 (382)
.+.++...... ... +.+.. ...+.+..+.+.....+......+.+.+.++..++++++ |.+
T Consensus 82 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (189)
T d2i3ba1 82 VDLTSFEQLAL-PVL-RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIP 144 (189)
T ss_dssp ECHHHHHTTTT-TTT-CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECC
T ss_pred ccHHHHHHHHH-HHH-HHHHHHhhcCCCeeEeeccccchhhhHHHHHHHHHHhccCceEEEeccc
Confidence 12222221110 001 11111 123455555555556666677778887887787776554 443
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.65 E-value=1e-05 Score=68.27 Aligned_cols=27 Identities=41% Similarity=0.514 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
|+++.|+||||||||||++.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 899999999999999999999877653
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=1.1e-05 Score=66.41 Aligned_cols=31 Identities=29% Similarity=0.124 Sum_probs=24.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEE
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~ 247 (382)
+++|+|++|||||||++-|...+....-++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~ 34 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPG 34 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6899999999999999999977654433343
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.50 E-value=2.9e-05 Score=67.96 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~ 247 (382)
+|++.+++|+||+|||||++.|.+-..-..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 6999999999999999999999987766667765
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.47 E-value=2.7e-05 Score=64.29 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=27.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
.|+.+.|+||+||||||+.+.|+..+... -+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC--EEEecH
Confidence 58999999999999999999999876321 344554
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.45 E-value=2.7e-05 Score=64.27 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=24.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++|-+|.|+|++||||||+.+.|+.-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999654
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.31 E-value=4.1e-05 Score=63.28 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=23.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPLS 243 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~~ 243 (382)
++++|+|++|||||||+.-|...+....
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g 29 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREG 29 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 4789999999999999998888776543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.25 E-value=7.5e-05 Score=61.31 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.++|.|.|++||||||+++.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999874
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.25 E-value=7.5e-05 Score=61.39 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=25.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
|+|-.++|.||+||||||+.+.|+.-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999987653
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.25 E-value=5.6e-05 Score=62.46 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=22.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.|+|+||+|||||||++.|+.-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999776
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=7e-05 Score=61.51 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=24.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++.++.|.|++||||||+.+.|+.-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999999866
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.20 E-value=3.3e-05 Score=67.82 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL 247 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~ 247 (382)
+|++.+++|+||+|||||++.|.|-..-..|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 6899999999999999999999987766667765
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=7.9e-06 Score=68.71 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=28.5
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.+++.++++.+| ++.|+|||||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 356777888776 9999999999999999999743
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.19 E-value=7.6e-05 Score=61.80 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=25.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceE
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i 246 (382)
+++++|.|++||||||+++.|...+......+
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCe
Confidence 47899999999999999999987665444333
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.0001 Score=63.58 Aligned_cols=48 Identities=29% Similarity=0.441 Sum_probs=34.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC--------------CCCceEEEcCEeCCCCCHHHHhc
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD--------------PLSGCILVDDHDVQNIRLDSLRR 263 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~--------------~~~G~i~~~g~~~~~~~~~~~r~ 263 (382)
.|..+.|+||||||||||.+.|+--++ |..|+ .||+|..-++.+...+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~ 62 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKE 62 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccc--cccccceeecHHHHHH
Confidence 589999999999999999998875543 12244 3676666666665543
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=8.5e-05 Score=59.93 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.+.|+||+||||||+.+.|+--+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998765
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.15 E-value=8.8e-05 Score=62.18 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+|||.|++|||||||++.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.0012 Score=57.72 Aligned_cols=47 Identities=26% Similarity=0.400 Sum_probs=31.4
Q ss_pred cEEEEeEEEEeCC-----CCCCccceeeEEeeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 187 DVKFCNISFKYAD-----NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 187 ~i~~~~v~f~y~~-----~~~~~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
.+++++.. +|- +++.+=+|++++ +.+..+.|.|||.|||||++|.+.
T Consensus 11 ~l~i~~~r--HPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 11 GIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp CEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeE--CCEEEcccCCCccceeEEEC-CCceEEEEeccCchhhHHHHHHHH
Confidence 57777752 331 122344555554 235688999999999999999764
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=6e-05 Score=63.27 Aligned_cols=26 Identities=42% Similarity=0.488 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|-++.|+|++||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998655
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.13 E-value=9.4e-05 Score=60.39 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=25.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
+.+.|+||+||||||+++.|+..+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 4689999999999999999998774 3455443
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.09 E-value=0.00012 Score=59.03 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=23.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEc
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~ 249 (382)
+.+.|+|++||||||+++.|..-. .|.+.++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEec
Confidence 478899999999999999775432 2455554
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.04 E-value=0.00081 Score=58.47 Aligned_cols=30 Identities=33% Similarity=0.474 Sum_probs=22.9
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
+=+|+++ . ++.+.|.|||.+||||++|.+.
T Consensus 27 VpNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 27 VPNDLEM--A-HELVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp CCEEEEE--S-SCEEEEESCSSSSHHHHHHHHH
T ss_pred ecceEEe--C-CcEEEEECCCccccchhhhhhH
Confidence 3345544 2 4689999999999999999664
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.00 E-value=0.00014 Score=59.42 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.|+||+||||||+.+.|+--+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.00022 Score=59.85 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.+.|+||||+|||||++.|+..+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhC
Confidence 4679999999999999999888543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.00029 Score=58.69 Aligned_cols=40 Identities=30% Similarity=0.470 Sum_probs=29.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC------------CCCCceEEEcCEeCCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY------------DPLSGCILVDDHDVQNI 256 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~------------~~~~G~i~~~g~~~~~~ 256 (382)
++||+|++|+|||||++.|+|-- .+..|.+.++|.++..+
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFV 61 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeee
Confidence 68999999999999999998743 12345677777665433
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.00023 Score=60.99 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++||.|++||||||+.+.|.-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887654
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.88 E-value=0.00038 Score=64.06 Aligned_cols=45 Identities=27% Similarity=0.461 Sum_probs=35.3
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCH
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL 258 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~ 258 (382)
++.|.-+.|+|++||||||+++.|++..+|..=-|.+. |..++..
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE--d~~El~l 207 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE--DTEEIVF 207 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE--SSCCCCC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeecc--chhhhhc
Confidence 45567799999999999999999999998876666663 3444443
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.85 E-value=0.00022 Score=60.11 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999985
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.84 E-value=0.00024 Score=59.83 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+..++.|+||+||||||+.+.|+--|
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998766
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.81 E-value=0.003 Score=55.82 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=28.1
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHhh
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
-|+++.-=+.+|+.+.|.|++|+||||++.-++-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4666554589999999999999999999877763
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.80 E-value=0.00034 Score=58.69 Aligned_cols=27 Identities=37% Similarity=0.621 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
|+|-.+.|+||.||||||..+.|+--|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999999655
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.79 E-value=0.00028 Score=59.37 Aligned_cols=43 Identities=37% Similarity=0.645 Sum_probs=29.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC-------------CCCceEEEcCEeCCCCCHHHH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD-------------PLSGCILVDDHDVQNIRLDSL 261 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~-------------~~~G~i~~~g~~~~~~~~~~~ 261 (382)
-+.|+|||||||+||++.|+.-++ |..|++ +|++..-++.+..
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~--~g~dy~fvs~~~f 58 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEF 58 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC--BTTTEEECCHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCc--CCccceeccHHHH
Confidence 378999999999999999875442 234443 5666555555544
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.68 E-value=0.00042 Score=56.99 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|+|+|++|+|||||++.|+|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998744
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.66 E-value=0.00041 Score=58.61 Aligned_cols=21 Identities=62% Similarity=0.830 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 016798 218 VALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g~ 238 (382)
+.|+||||||||||++.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.64 E-value=0.00039 Score=57.66 Aligned_cols=22 Identities=41% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.|+|||++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.00058 Score=62.31 Aligned_cols=47 Identities=30% Similarity=0.393 Sum_probs=33.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCccccccHH
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVA 280 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 280 (382)
++||.|++||||||+.+.|..++.-..+ ...+..+++|.+..+...+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcC-----------------CCceEEEeeeeeECCchHH
Confidence 5799999999999999999887742111 1246778888877765443
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.00063 Score=56.97 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.3
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++|+.+.|.||+|||||||+.-++.-
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999999998877643
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.62 E-value=0.0006 Score=58.93 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|+|+.|||||||++.|....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998654
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.61 E-value=0.00046 Score=56.92 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.+.|+|++||||||+.+.|+--+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999998654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.61 E-value=0.00051 Score=56.92 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+|+|+|++|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.59 E-value=0.00048 Score=56.43 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.|+|++||||||+.+.|+..+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998766
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.59 E-value=0.00032 Score=59.23 Aligned_cols=28 Identities=21% Similarity=0.557 Sum_probs=25.5
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++++.++.|+||.||||||+.+.|+.-|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999999866
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.57 E-value=0.00047 Score=58.14 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=26.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEc
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~ 249 (382)
+-.++.|+||.||||||+++.|+.-| |-+.++
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 34579999999999999999999877 445554
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.00051 Score=55.64 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
|=+++++|++|+|||||++.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 447899999999999999999875
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.53 E-value=0.00036 Score=58.18 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
-|||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999764
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.0006 Score=56.14 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999974
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.53 E-value=0.00063 Score=54.56 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++.|+|++|+|||||++-+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988753
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.51 E-value=0.00065 Score=54.37 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.+.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999974
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.51 E-value=0.00065 Score=54.82 Aligned_cols=41 Identities=10% Similarity=-0.042 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 331 Gq~QrialaRall~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
.+.-+-.+++.++.+...=++ |+||.+...-.++.+.|.+.
T Consensus 124 ~~~i~~~~~~~~~~~~~~~~~--~~SA~~g~gv~e~~~~l~~~ 164 (169)
T d1upta_ 124 SSEMANSLGLPALKDRKWQIF--KTSATKGTGLDEAMEWLVET 164 (169)
T ss_dssp HHHHHHHHTGGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEE--EEeCCCCCCHHHHHHHHHHH
Confidence 344555567777777666666 99999998887777776544
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.48 E-value=0.00044 Score=57.16 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++.|.|++||||||+++.|+..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3577899999999999999987763
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.48 E-value=0.00067 Score=57.27 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++|+|++|||||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.43 E-value=0.00051 Score=56.42 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.-+++|||++|+|||||++.+.+-.
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998754
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.00079 Score=56.42 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++.|+||.||||||.++.|+--|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.0005 Score=59.47 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++.++|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999998764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.40 E-value=0.00077 Score=57.87 Aligned_cols=42 Identities=31% Similarity=0.296 Sum_probs=31.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCC--CCceEEEcCEeCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQ 254 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~--~~G~i~~~g~~~~ 254 (382)
++|.++.+.|.|||||||+.+.|..-+.. ..-.+.+||..++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 57889999999999999999998743321 1125778876654
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.40 E-value=0.0005 Score=57.03 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 016798 218 VALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g~ 238 (382)
|||+|++++|||||++.|.|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999875
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.39 E-value=0.00072 Score=56.66 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++||+|++||||||+++.|.-+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999998653
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.39 E-value=0.0008 Score=57.54 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+++|-||+||||||..++|+--|
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999655
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.37 E-value=0.00087 Score=56.51 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.++++|.+||||||+++.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999997663
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.37 E-value=0.00067 Score=56.83 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++.|.||.||||||+++.|+--|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998666
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.36 E-value=0.00087 Score=55.35 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.|+||.||||||+.+.|+--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997665
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.34 E-value=0.001 Score=55.28 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=22.5
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhh
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
-++.+.+.++|++||||||+++-++.
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999998754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.33 E-value=0.00087 Score=54.88 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhhCC
Q 016798 218 VALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.++|++||||||+.++|+.-+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6688999999999999998665
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.30 E-value=0.00077 Score=56.60 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.-+|+|-|+.||||||+++.|...+
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34479999999999999999998866
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.24 E-value=0.0011 Score=55.01 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++.|+||.||||||+.+.|+--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999766
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.0026 Score=51.89 Aligned_cols=29 Identities=34% Similarity=0.484 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh-----CCCCCCce
Q 016798 217 TVALIGPSGGGKSTLAKLLLR-----LYDPLSGC 245 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g-----~~~~~~G~ 245 (382)
+++++|.+|+|||||++-+++ -|.|+-|.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCcceee
Confidence 589999999999999987764 35566553
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.23 E-value=0.001 Score=59.01 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.++|+|++|+|||||++.|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38999999999999999999854
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.00054 Score=56.49 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
=.|+|+|++++|||||++.|.|..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999998854
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0012 Score=56.51 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=24.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
++|.+++|-|+-||||||++++|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999877553
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.19 E-value=0.001 Score=58.41 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=26.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
.+-+.++||+|||||||++.|++.+.. +-+.+|+
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 345889999999999999999998743 3455554
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0013 Score=55.94 Aligned_cols=30 Identities=40% Similarity=0.602 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC---CCCceE
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD---PLSGCI 246 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~---~~~G~i 246 (382)
+++|-||.||||||+.+.|+--|. -+.|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 899999999999999999985553 344544
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.16 E-value=0.0017 Score=52.68 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++++|+.|+|||||++.+.+-..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 589999999999999999988553
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.15 E-value=0.00042 Score=56.12 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
+++++|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.14 E-value=0.0014 Score=56.15 Aligned_cols=27 Identities=37% Similarity=0.555 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
++.++++|||+|+||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999997666666554
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.0015 Score=55.60 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|++++|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 59999999999999999999998654
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.08 E-value=0.0014 Score=55.74 Aligned_cols=20 Identities=45% Similarity=0.690 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 016798 217 TVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~ 236 (382)
++||+|+.||||||+++.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0014 Score=54.13 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++.|+||.||||||..+.|+--|
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998665
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.04 E-value=0.0031 Score=51.25 Aligned_cols=37 Identities=30% Similarity=0.498 Sum_probs=26.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhh-----CCCCCCce-----EEEcCEe
Q 016798 216 ETVALIGPSGGGKSTLAKLLLR-----LYDPLSGC-----ILVDDHD 252 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g-----~~~~~~G~-----i~~~g~~ 252 (382)
-+++|+|++|+|||||++-+.+ .+.|+.|. +.+||.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 51 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE 51 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEE
Confidence 3799999999999999998764 33455443 3456554
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.00 E-value=0.002 Score=52.77 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998875
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.93 E-value=0.002 Score=53.31 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.|.||.||||||+.+.|+--|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998666
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.93 E-value=0.0017 Score=53.91 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhhCC
Q 016798 218 VALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+||+|+..||||||++.|.+..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999754
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.92 E-value=0.0021 Score=55.10 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=23.1
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
+++|+++.|.||+|||||||+.-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999987665
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.88 E-value=0.0021 Score=54.27 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhh
Q 016798 216 ETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g 237 (382)
+.|+|+|+.|+|||||++.+.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999986
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.0021 Score=55.09 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+|.+++|-|+.||||||++++|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 799999999999999999999986664
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.80 E-value=0.0022 Score=52.36 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
=+++++|.+|||||||++-|.+-
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998874
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.74 E-value=0.0027 Score=59.83 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.|||+|++|+|||||+|.|.|...
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 389999999999999999999654
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.0017 Score=59.70 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=23.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPL 242 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~ 242 (382)
.-++||+||.|||||||+..|.+.+...
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 5579999999999999999998776543
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.0045 Score=50.49 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=23.7
Q ss_pred EEEEECCCCCcHHHHHHHHhh-----CCCCCCceEE
Q 016798 217 TVALIGPSGGGKSTLAKLLLR-----LYDPLSGCIL 247 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g-----~~~~~~G~i~ 247 (382)
+++++|.+|+|||||++-+.+ -|.|+.|...
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~ 42 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY 42 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccce
Confidence 599999999999999987654 3356666543
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0059 Score=49.70 Aligned_cols=28 Identities=39% Similarity=0.595 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh-----CCCCCCc
Q 016798 217 TVALIGPSGGGKSTLAKLLLR-----LYDPLSG 244 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g-----~~~~~~G 244 (382)
++.+||++|+|||||++-+++ -|.|+-|
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCCcee
Confidence 589999999999999998874 4456545
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.62 E-value=0.0031 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
=.+.|+||.||||||+.+.|+--|
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999766
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.61 E-value=0.0031 Score=51.45 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 389999999999999997764
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.58 E-value=0.0033 Score=51.99 Aligned_cols=23 Identities=43% Similarity=0.678 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.|+||.||||||+.+.|+--|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999766
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.55 E-value=0.0031 Score=57.26 Aligned_cols=39 Identities=28% Similarity=0.520 Sum_probs=29.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~ 254 (382)
|+.-+.++||+|+|||.|+|.|+..+.. --+.+++-++.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~~~ 86 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFT 86 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGGS
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcccc--chhcccccccc
Confidence 4456678999999999999999988642 24666665553
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.0035 Score=53.28 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++||+|..||||||.++.+..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999988643
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=0.0026 Score=54.61 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+-.++++|||+|+||||.+-=|+..+.
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346799999999999987665565554
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.0032 Score=51.21 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|++|+|||||++-+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998774
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.53 E-value=0.0035 Score=50.79 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999997754
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0033 Score=54.16 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=24.2
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhh
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
=|++|+.+.|.|++||||||+..-++-
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999999887763
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.52 E-value=0.0016 Score=58.51 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
++||.|+|||||||+.+.|.-.+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999877653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.49 E-value=0.0037 Score=54.23 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.+.|.||+|+||||++++++..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999998764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.49 E-value=0.0082 Score=48.74 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh-C----CCCCCc
Q 016798 217 TVALIGPSGGGKSTLAKLLLR-L----YDPLSG 244 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g-~----~~~~~G 244 (382)
+++++|..|+|||||++-+.+ - ++|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence 689999999999999996664 3 345556
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.47 E-value=0.0042 Score=52.74 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.8
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHH
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLL 235 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll 235 (382)
+++|+.+.|.|++|+|||||+.-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999998543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.47 E-value=0.0037 Score=53.46 Aligned_cols=26 Identities=15% Similarity=0.265 Sum_probs=23.7
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhh
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g 237 (382)
+++|+.+.|.|++|+||||++.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999877763
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.45 E-value=0.0035 Score=54.07 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=27.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~ 253 (382)
.+.+.||+|+||||++++++..+.... +.+++.+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~--~~~~~~~~ 71 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI--HVTSGPVL 71 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE--EEEETTTC
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCc--ccccCccc
Confidence 478999999999999999998886553 34455443
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.43 E-value=0.0031 Score=51.57 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
++++||+.|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998865
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.41 E-value=0.0039 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.5
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
+++|+.+.|.||+||||||+.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999987443
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.41 E-value=0.0041 Score=50.39 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999986663
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.41 E-value=0.0062 Score=52.74 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=25.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCCCCc
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSG 244 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~~~G 244 (382)
...+.|.||.|+||||+++.++..+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 457899999999999999999988865444
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.0042 Score=50.98 Aligned_cols=21 Identities=52% Similarity=0.661 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|+.|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997765
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.39 E-value=0.0043 Score=59.26 Aligned_cols=46 Identities=30% Similarity=0.590 Sum_probs=32.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCc
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT 273 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 273 (382)
=+.++||+|||||-|++.|++++... -+.+|...+. ..|||-.|..
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DVe 96 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEVD 96 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCTH
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceee---------ecceeecchh
Confidence 47889999999999999999988643 4666665543 3788888763
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.36 E-value=0.0057 Score=50.83 Aligned_cols=32 Identities=38% Similarity=0.391 Sum_probs=25.7
Q ss_pred ccceeeEEeeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 204 ~l~~isl~i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
.++.-.+.+ .|.-+.|.|+||+||||++..|.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 355555555 89999999999999999987665
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.34 E-value=0.0042 Score=58.54 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=26.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCCCCCce
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~ 245 (382)
.++-.+.+.||+||||||.+..++...+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCCCce
Confidence 467889999999999999999998876443334
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.33 E-value=0.0046 Score=50.47 Aligned_cols=31 Identities=32% Similarity=0.375 Sum_probs=26.9
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
..++|.++.+.|+=||||||++|.++.-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 3578999999999999999999999876643
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.30 E-value=0.0044 Score=53.82 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+..+.|+||+|+|||||++-++.-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999876544
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.29 E-value=0.0052 Score=52.84 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=26.6
Q ss_pred cceeeEE--eeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 205 LDQLNLH--IRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 205 l~~isl~--i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
|+.+ +. +++|+.+.|.|++||||||++.-++--
T Consensus 15 LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 15 LDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp HHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHh-hcCCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4544 34 899999999999999999998766533
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.29 E-value=0.0087 Score=48.83 Aligned_cols=20 Identities=40% Similarity=0.601 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 016798 218 VALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g 237 (382)
++++|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 89999999999999977654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.27 E-value=0.0048 Score=50.97 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997763
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.0048 Score=51.03 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 016798 218 VALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g 237 (382)
++++|++|+|||||++-+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 89999999999999988874
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.005 Score=49.96 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|++|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988875
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.0051 Score=50.13 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+++++|.+|+|||||++-+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 589999999999999999987643
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.25 E-value=0.0028 Score=54.45 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=19.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+..++++|||+|+||||.+-=|+-.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999998655445443
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0054 Score=54.10 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=30.5
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCC
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~ 254 (382)
+++...+.+.||+|||||++++.|+..+... -+.++..++.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l~ 82 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFV 82 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSST
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHHHHcCCC--EEEEEhHHhh
Confidence 3445668899999999999999999877532 3566665553
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.20 E-value=0.0049 Score=55.31 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++||.|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 6899999999999999877544
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.20 E-value=0.0047 Score=53.00 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+.|.||+|+||||++++++..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998754
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.17 E-value=0.0056 Score=54.37 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=37.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC--CCCCceEEEcCEeCCCCCHHHHhcceEEec
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 269 (382)
-+||+|+.|+|||||+..|+..- ....|+|. +|..+.+...++..+.+++-.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~ 57 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRT 57 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSC
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEEe
Confidence 37999999999999999985332 13456665 667777777777776665443
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.17 E-value=0.0095 Score=47.96 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998874
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.17 E-value=0.011 Score=47.93 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++|+|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998874
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.16 E-value=0.0049 Score=49.93 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|.+|+|||||++-+++
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999997764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.0055 Score=50.09 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
++++||++|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 488999999999999997764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.14 E-value=0.0053 Score=52.91 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++||+|+..||||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999874
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.11 E-value=0.011 Score=48.08 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh-----CCCCCCce
Q 016798 217 TVALIGPSGGGKSTLAKLLLR-----LYDPLSGC 245 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g-----~~~~~~G~ 245 (382)
++.++|.+|+|||||++-+.+ .+.|+.|.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~ 39 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCcceee
Confidence 478999999999999998764 34555553
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.10 E-value=0.0075 Score=49.28 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 48899999999999999988754
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.06 E-value=0.0041 Score=53.12 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
...++.+|||+|+||||.+.=|+..+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999987776765553
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.06 E-value=0.0054 Score=52.88 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHhhCCC
Q 016798 218 VALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+.+.||+|+||||+++++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999998664
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.05 E-value=0.0053 Score=52.53 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhhCC
Q 016798 218 VALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.+.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.04 E-value=0.011 Score=48.13 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh-----CCCCCCce
Q 016798 217 TVALIGPSGGGKSTLAKLLLR-----LYDPLSGC 245 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g-----~~~~~~G~ 245 (382)
++.++|.+|+|||||++-+.. -|.|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCcccc
Confidence 689999999999999998763 34566554
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.03 E-value=0.0035 Score=53.72 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=16.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
...++++|||+|+||||.+-=|+..+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999998765555444
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.0057 Score=49.86 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
++.++|++|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998875
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.02 E-value=0.0061 Score=51.15 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|+|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998755
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.97 E-value=0.0068 Score=48.86 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999997764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.0071 Score=48.98 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++|+|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.86 E-value=0.012 Score=48.72 Aligned_cols=25 Identities=40% Similarity=0.322 Sum_probs=21.4
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
--.|.-+.|.|+||+||||++-.|.
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 3478889999999999999987665
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.014 Score=48.04 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999997665
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.007 Score=53.60 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=32.6
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCce-EEEcCEe
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-ILVDDHD 252 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~-i~~~g~~ 252 (382)
=+++|.++-|.||+|||||||+--++...+-..|. +++|...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 58899999999999999999988777666544444 5566543
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.79 E-value=0.007 Score=53.53 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=25.9
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.+++..-+.+.||+|+|||+|++.+++.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 355667799999999999999999999774
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.79 E-value=0.0081 Score=48.67 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++|+|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.008 Score=49.56 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987663
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.76 E-value=0.014 Score=47.95 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=22.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh-C----CCCCCceEE
Q 016798 217 TVALIGPSGGGKSTLAKLLLR-L----YDPLSGCIL 247 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g-~----~~~~~G~i~ 247 (382)
++.++|.+|+|||||++-++. - |.|+-|...
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~ 39 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY 39 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecc
Confidence 578999999999999986653 2 455555443
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.75 E-value=0.0045 Score=51.00 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhh
Q 016798 216 ETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g 237 (382)
=+++++|++|+|||||++-+.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999998764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=0.0074 Score=49.42 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
++.++|.+|+|||||++-+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999988774
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.62 E-value=0.0092 Score=48.88 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|..|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998775
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.0085 Score=48.93 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.54 E-value=0.0089 Score=48.72 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 016798 218 VALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g 237 (382)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997764
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.50 E-value=0.0086 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhh
Q 016798 216 ETVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g 237 (382)
.++||+|+-||||||.++.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.01 Score=48.15 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 016798 217 TVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~ 236 (382)
+++++|.+|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 57899999999999999887
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=0.0083 Score=53.70 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=28.4
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.=+.|-+|++.+|+|++|+|||||+.-|+.-.
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 44678999999999999999999999988754
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.45 E-value=0.0062 Score=49.76 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=9.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999986654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.45 E-value=0.0094 Score=49.69 Aligned_cols=20 Identities=45% Similarity=0.491 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 016798 218 VALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g 237 (382)
++|+|+.|+|||||++-+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 89999999999999997764
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.39 E-value=0.015 Score=47.89 Aligned_cols=27 Identities=41% Similarity=0.336 Sum_probs=22.1
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
+-.-.|.-+.|.|+||+||||++-.+.
T Consensus 10 ~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 10 LVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 334578999999999999999986554
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.39 E-value=0.0097 Score=52.01 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.+.+.||+|||||++++.|+....
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHhhccc
Confidence 578999999999999999997653
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.33 E-value=0.011 Score=53.93 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.-+++|+|+.|||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999998654
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.32 E-value=0.013 Score=51.31 Aligned_cols=34 Identities=32% Similarity=0.416 Sum_probs=25.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD 252 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~ 252 (382)
-+.+.||+|+|||++++.++..+.-. -+.++..+
T Consensus 44 giLl~GppGtGKT~la~aia~~~~~~--~~~i~~~~ 77 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEARVP--FITASGSD 77 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHcCCC--EEEEEhHH
Confidence 37899999999999999999876422 34454433
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.012 Score=47.76 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999996643
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.31 E-value=0.011 Score=48.42 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=25.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceE
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i 246 (382)
++.++|..|+|||||++-+..-..|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 579999999999999998877666777743
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.30 E-value=0.011 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.304 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhhCC
Q 016798 218 VALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.+.||+|+||||++++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 6789999999999999988654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.30 E-value=0.013 Score=49.01 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHhhCC
Q 016798 218 VALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+||+|...+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999865
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.0072 Score=49.31 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=17.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
+++++|++|+|||||++-++.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986643
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.15 E-value=0.0092 Score=53.15 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHh---hCCCCCCceEEEcCEeCCCCCHHHHhcce
Q 016798 217 TVALIGPSGGGKSTLAKLLL---RLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~---g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 265 (382)
-+||+|+.|||||||+..|+ |..+ ..|++. +|..+.+...++..+.+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~ 57 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGI 57 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc-ccccee-cCceEEeccHHHHhcCC
Confidence 37999999999999999885 4443 335553 44444455555544443
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.11 E-value=0.015 Score=50.84 Aligned_cols=24 Identities=50% Similarity=0.632 Sum_probs=21.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
.||+.+.|+|++|+|||||+--|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999987665
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.014 Score=47.15 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 016798 217 TVALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g 237 (382)
++++||.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999997763
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.07 E-value=0.012 Score=52.16 Aligned_cols=54 Identities=20% Similarity=0.418 Sum_probs=39.1
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCce-EEEcCEeCCCCCHHHHhcceEE
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-ILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~-i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
-++.|.++-+.||+||||||++-.++...+...|. |+||... .++++.++ ++|+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~-~~Gv 110 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK-KLGV 110 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH-HHTC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHHH-HhCC
Confidence 58899999999999999999987777766666666 4556544 35555444 3453
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.07 E-value=0.015 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.-+.+.||+|+|||++++.++....
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceeEEecCCCCCchHHHHHHHHHhC
Confidence 3488999999999999999999654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.04 E-value=0.016 Score=49.44 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=23.6
Q ss_pred EEEEECCCCCcHHHHHHHHh-hCCCCCCce
Q 016798 217 TVALIGPSGGGKSTLAKLLL-RLYDPLSGC 245 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~-g~~~~~~G~ 245 (382)
++.++|.+|+|||||++-+. +-+.|+-|-
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCCe
Confidence 68999999999999998764 556677773
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.014 Score=48.23 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 016798 217 TVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~ 236 (382)
+++|+|.+|+|||||++-++
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999998766
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.96 E-value=0.0091 Score=48.67 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
++.++|++|+|||||++-+.+-..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999998875443
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.91 E-value=0.013 Score=51.94 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=38.4
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCce-EEEcCEeCCCCCHHHHhcceEE
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGC-ILVDDHDVQNIRLDSLRRHVGL 267 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~-i~~~g~~~~~~~~~~~r~~i~~ 267 (382)
=++.|.++-|.||+|||||||+-.++...+-..|. +++|... .++++.+ +.+|+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~~a-~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPVYA-RALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHHH-HHTTC
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCHHHH-HHhCC
Confidence 47899999999999999999998888776544554 4555442 3555533 34454
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.90 E-value=0.014 Score=49.63 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhhCC
Q 016798 218 VALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+-+.||.|+||||++++++..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999999754
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.88 E-value=0.015 Score=48.04 Aligned_cols=28 Identities=36% Similarity=0.541 Sum_probs=23.1
Q ss_pred EEEEECCCCCcHHHHHHHHh--hCCCCCCc
Q 016798 217 TVALIGPSGGGKSTLAKLLL--RLYDPLSG 244 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~--g~~~~~~G 244 (382)
++.++|.+|+|||||++-+. --+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 68899999999999999873 33457888
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.78 E-value=0.013 Score=50.55 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhhCC
Q 016798 218 VALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+.|.||.|+||||+++.++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 7899999999999999998653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.77 E-value=0.015 Score=52.01 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.+++||...||||||++.|+|.--
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCC
Confidence 489999999999999999999763
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.017 Score=47.85 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=17.8
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 016798 217 TVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~ 236 (382)
+++++|.+|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999987665
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.58 E-value=0.015 Score=51.77 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-+|+|+||.++|||||++.|+|-.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999855
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.54 E-value=0.015 Score=53.83 Aligned_cols=39 Identities=36% Similarity=0.381 Sum_probs=31.0
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEE-EcCEe
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-VDDHD 252 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~-~~g~~ 252 (382)
.++++.++.+.||.|+||||+++.|++++. |.+. +|+-+
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~ 189 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPL 189 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCT
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcc
Confidence 347888999999999999999999999885 4443 45443
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.53 E-value=0.016 Score=49.61 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
++++|=|.-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 5789999999999999999987653
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.50 E-value=0.019 Score=48.58 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
-+|++|+.++|||||+..|++.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 3799999999999999999643
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.48 E-value=0.022 Score=50.65 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.+++||...||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999965
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.31 E-value=0.025 Score=50.18 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=26.9
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhC
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.=+.+-+|++++|.|++|+|||||+.-++.-
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 4478999999999999999999998777654
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.10 E-value=0.013 Score=53.17 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=24.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYDP 241 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~~ 241 (382)
|-.+.|+|+.|+|||||++.+.++++|
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 346899999999999999999999976
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.96 E-value=0.017 Score=50.07 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
++.+.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999999765
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.67 E-value=0.023 Score=51.45 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=26.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~ 253 (382)
.+.++||+|+|||.|++.|+..+.. --|.+|-...
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~s~~ 88 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDMSEY 88 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEGGGC
T ss_pred EEEEECCCcchhHHHHHHHHhhccC--CeeEeccccc
Confidence 4789999999999999999988742 2556654443
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.63 E-value=0.027 Score=50.61 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
.+||||..-+|||||++.|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999875
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.42 E-value=0.031 Score=49.94 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhhC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
=++||||...+|||||++.|.+-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 35999999999999999999975
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.37 E-value=0.024 Score=52.95 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=23.9
Q ss_pred CCEEEEECCCCCcHHHHHHH-HhhCCCCCCceEEEc
Q 016798 215 GETVALIGPSGGGKSTLAKL-LLRLYDPLSGCILVD 249 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~l-l~g~~~~~~G~i~~~ 249 (382)
-..+.|+|++|||||++++. +...+....+-|.+|
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 35689999999999999864 444444333444454
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=91.97 E-value=0.036 Score=49.11 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=32.1
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcC
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g 250 (382)
.=+.|-+|++++|+|++|+|||+|+..+..-..-+...+.+-+
T Consensus 60 ~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~~ 102 (276)
T d1fx0a3 60 AMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVA 102 (276)
T ss_dssp TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEE
T ss_pred ccccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeeeee
Confidence 4478999999999999999999999876555444444444433
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.76 E-value=0.043 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhhCC
Q 016798 218 VALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+-|.||+|+|||-|++.++--+
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6899999999999999988654
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.72 E-value=0.044 Score=44.81 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC---CCCCCc
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL---YDPLSG 244 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~---~~~~~G 244 (382)
++.++|.+|+|||||++-+..- +.|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 5789999999999999988643 335555
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.71 E-value=0.05 Score=45.57 Aligned_cols=24 Identities=21% Similarity=0.526 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
-+||+|...+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=91.66 E-value=0.072 Score=46.86 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=43.2
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEeCCCCCHHHHhcceEEecCCCcc
Q 016798 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 274 (382)
.++-.++.+.||.++||||++++|+.++ +.-|.+ ++ .-++.....+...-..+.+|+..
T Consensus 101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~--~~-~~~~f~l~~l~~k~~~~~~e~~~ 159 (267)
T d1u0ja_ 101 FGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCV--NW-TNENFPFNDCVDKMVIWWEEGKM 159 (267)
T ss_dssp STTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEEC--CT-TCSSCTTGGGSSCSEEEECSCCE
T ss_pred CCccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhc--cc-cCCCccccccCCCEEEEEeCCCc
Confidence 4667789999999999999999999998 554543 32 22456677777765566677763
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=91.61 E-value=0.02 Score=44.02 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=18.2
Q ss_pred eeCCCEEEEECCCCCcHHHHH
Q 016798 212 IRAGETVALIGPSGGGKSTLA 232 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKSTl~ 232 (382)
+++|+.+.|++|+|||||+.+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 468999999999999999554
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.45 E-value=0.049 Score=48.03 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~ 238 (382)
..+++|+|..|.|||||++.+..-
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999988653
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=91.25 E-value=0.08 Score=48.11 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=25.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEE
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~ 248 (382)
.|.|=|+-|+||||+++.|..-+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 47788999999999999999988654443333
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.19 E-value=0.057 Score=47.57 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=26.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC-----------CCCCceEEEc
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY-----------DPLSGCILVD 249 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~-----------~~~~G~i~~~ 249 (382)
=++||||-.-+|||||++.|.+-- +|.-|.|.+.
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecc
Confidence 379999999999999999999532 3456877654
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=91.13 E-value=0.057 Score=45.20 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhhCC
Q 016798 218 VALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+|++|+-.+|||||++.|.+..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 7999999999999999998753
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=90.93 E-value=0.047 Score=49.40 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=27.1
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCEe
Q 016798 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD 252 (382)
Q Consensus 210 l~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~~ 252 (382)
...++| .+.++||+|+|||.|++.|++...-...-+.++|-+
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~ 160 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGE 160 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSC
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhH
Confidence 334443 455689999999999999998752111224555443
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.88 E-value=0.071 Score=40.98 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=29.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh-hCCCCCCc-eEE-EcCEeC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLL-RLYDPLSG-CIL-VDDHDV 253 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~-g~~~~~~G-~i~-~~g~~~ 253 (382)
++|=++.+.|-+||||||+.+.|. .|.+-..| .|. +||.++
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni 47 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNK 47 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTC
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCH
Confidence 467789999999999999999884 66654433 344 455433
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=90.79 E-value=0.057 Score=49.76 Aligned_cols=32 Identities=34% Similarity=0.585 Sum_probs=24.3
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCceEEEcCE
Q 016798 218 VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH 251 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~~g~ 251 (382)
+.++||||+|||-|+|.|+.++.. .-|.+|-.
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~~--~~ir~D~s 102 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLDI--PIAISDAT 102 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGG
T ss_pred eeeeCCCCccHHHHHHHHHhhccc--ceeehhhh
Confidence 567899999999999999988632 24555543
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.65 E-value=0.052 Score=46.30 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRL 238 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~ 238 (382)
++.|.|.=|||||||++-++.-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5789999999999999998874
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.24 E-value=0.056 Score=46.39 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.+.|.||+|+||||++++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 477899999999999999987653
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.99 E-value=0.1 Score=43.83 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.+.+.||.|+||||+++.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 488999999999999999998654
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=89.80 E-value=0.093 Score=44.71 Aligned_cols=19 Identities=42% Similarity=0.419 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 016798 218 VALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~ 236 (382)
++++|+..+|||||++.|+
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7999999999999999995
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=89.70 E-value=0.085 Score=47.88 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=25.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCceEEE
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~~~~G~i~~ 248 (382)
.|.|=|+-||||||+++.|...+......+.+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~ 38 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL 38 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence 48889999999999999999888654434443
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.39 E-value=0.095 Score=46.08 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhhCC
Q 016798 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
.-+.||||+|+|||+++.-++...
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHHH
Confidence 356899999999999999888654
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=89.38 E-value=0.083 Score=47.53 Aligned_cols=38 Identities=32% Similarity=0.468 Sum_probs=27.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC-CCCCceEEEcCEeCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY-DPLSGCILVDDHDVQ 254 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~-~~~~G~i~~~g~~~~ 254 (382)
.+.++||+|+|||.+++.|+..+ .....-+.+|.....
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~ 93 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 93 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 46789999999999999999865 333445666654443
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.36 E-value=0.086 Score=44.82 Aligned_cols=19 Identities=47% Similarity=0.585 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 016798 218 VALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~ 236 (382)
++++|+.++|||||+..|+
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7999999999999999874
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.31 E-value=0.1 Score=43.58 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
-+.||||+|.|||+++.-|+...
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 46899999999999999888654
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.10 E-value=0.067 Score=47.52 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=25.1
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHh
Q 016798 208 LNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 208 isl~i~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
.-+.+-+|++++|.|++|+|||||+.-+.
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 44789999999999999999999976554
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.51 E-value=0.066 Score=45.68 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=19.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~ 236 (382)
-.|+-+.+++|+|+|||+..-+.+
T Consensus 56 l~g~~~~i~apTGsGKT~~~~~~~ 79 (237)
T d1gkub1 56 LRKESFAATAPTGVGKTSFGLAMS 79 (237)
T ss_dssp HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred HCCCCEEEEecCCChHHHHHHHHH
Confidence 368889999999999998654443
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=88.24 E-value=0.11 Score=47.08 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 016798 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 217 ~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
.|.|=|+-||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 488899999999999999987664
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=88.23 E-value=0.09 Score=40.55 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=24.6
Q ss_pred HHHccCCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 016798 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (382)
Q Consensus 339 aRall~~~~ililDEpts~LD~~~~~~i~~~l~~~ 373 (382)
.+..+.+-+++|+||.= .+|..+...+...++..
T Consensus 88 ~~~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~ 121 (136)
T d1a1va1 88 GGCSGGAYDIIICDECH-STDATSILGIGTVLDQA 121 (136)
T ss_dssp TGGGGCCCSEEEEETTT-CCSHHHHHHHHHHHHHT
T ss_pred cchhhhcCCEEEEeccc-ccCHHHHHHHHHHHHHH
Confidence 34456788999999995 46888776666666544
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=87.66 E-value=0.13 Score=43.16 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=28.8
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhhCCCCCCceE
Q 016798 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246 (382)
Q Consensus 211 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~~~~G~i 246 (382)
.+++-.++.+.||.++|||+++..|+.++. |.+
T Consensus 49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~---G~v 81 (205)
T d1tuea_ 49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ---GAV 81 (205)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT---CEE
T ss_pred CCCCceEEEEECCCCccHHHHHHHHHHHhC---CEE
Confidence 368889999999999999999999999973 554
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.80 E-value=0.16 Score=43.73 Aligned_cols=19 Identities=42% Similarity=0.560 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 016798 218 VALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~ 236 (382)
++++|+.++|||||+.-|+
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 6899999999999998885
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.05 E-value=0.075 Score=44.14 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=16.8
Q ss_pred eCCCEEEEECCCCCcHHHHH
Q 016798 213 RAGETVALIGPSGGGKSTLA 232 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~ 232 (382)
..|+.+.+.+|+|||||+..
T Consensus 38 ~~~~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 38 FSGKNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp TTCSCEEEECSSHHHHHHHH
T ss_pred HcCCCEEEEcCCCCchhHHH
Confidence 35777889999999999864
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=85.88 E-value=0.12 Score=45.30 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=17.5
Q ss_pred eeCCCEEEEECCCCCcHHH
Q 016798 212 IRAGETVALIGPSGGGKST 230 (382)
Q Consensus 212 i~~G~~~aivG~sGsGKST 230 (382)
+++|+.+.+.+|+|||||+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp SSTTCEEEECCCTTSSTTT
T ss_pred hhcCCcEEEEECCCCCHHH
Confidence 4689999999999999997
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.88 E-value=0.15 Score=46.34 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 016798 218 VALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~ 236 (382)
+||+|+.|+|||||+..|+
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 8999999999999999985
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=85.83 E-value=0.24 Score=43.22 Aligned_cols=26 Identities=31% Similarity=0.249 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 215 G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+-.+++||..-+|||||++.|.|-..
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEEecCccchhhhhhhhhccce
Confidence 44599999999999999999999764
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=85.69 E-value=0.16 Score=50.54 Aligned_cols=27 Identities=26% Similarity=0.537 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+..+++.|.|+||||||+-.|.++..+
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL 110 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFL 110 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999887654
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.32 E-value=0.16 Score=50.74 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+..+++.|.|+||||||+-.|.++..+
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL 149 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYL 149 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998766
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=84.74 E-value=0.17 Score=43.63 Aligned_cols=19 Identities=42% Similarity=0.632 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 016798 218 VALIGPSGGGKSTLAKLLL 236 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~ 236 (382)
++|+|+.++|||||+..|+
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHH
Confidence 7999999999999999884
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=83.61 E-value=0.21 Score=49.85 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=24.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+..+++.|-|+||||||+-.|.++..+
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 467999999999999999999998776
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=83.53 E-value=0.5 Score=42.99 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.4
Q ss_pred CCCEEEEECCCCCcHHHHHH
Q 016798 214 AGETVALIGPSGGGKSTLAK 233 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ 233 (382)
.+.++.|.||-|+||||++.
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHH
Confidence 36789999999999999874
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=83.43 E-value=0.36 Score=42.95 Aligned_cols=24 Identities=33% Similarity=0.659 Sum_probs=19.3
Q ss_pred eEEe-eCCCEEEEECCCCCcHHHHH
Q 016798 209 NLHI-RAGETVALIGPSGGGKSTLA 232 (382)
Q Consensus 209 sl~i-~~G~~~aivG~sGsGKSTl~ 232 (382)
|-.+ +.|++..+-|-||+|||||-
T Consensus 7 san~~~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 7 SANVGEKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp EEEECTTSCEEEEECSTTSSHHHHH
T ss_pred ccccCCCCCEEEEEccCCCCcccce
Confidence 3444 35888899999999999975
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=83.37 E-value=0.44 Score=40.87 Aligned_cols=30 Identities=37% Similarity=0.480 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLS 243 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~~ 243 (382)
.+..+.|.|+.|+||+++++.|-...+...
T Consensus 22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~ 51 (247)
T d1ny5a2 22 AECPVLITGESGVGKEVVARLIHKLSDRSK 51 (247)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTTTT
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCcc
Confidence 466789999999999999999987655443
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=83.17 E-value=0.21 Score=50.53 Aligned_cols=27 Identities=26% Similarity=0.604 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+..+++.|.|+||||||+-.|.++..+
T Consensus 121 ~~~QsIiisGeSGaGKTe~~K~il~yL 147 (794)
T d2mysa2 121 RENQSILITGESGAGKTVNTKRVIQYF 147 (794)
T ss_dssp TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999888776
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=82.33 E-value=0.22 Score=50.35 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 240 (382)
+..+++.|.|+||||||.-.|.++..+.
T Consensus 119 ~~nQ~IiisGESGaGKTe~~K~il~yL~ 146 (789)
T d1kk8a2 119 RENQSCLITGESGAGKTENTKKVIMYLA 146 (789)
T ss_dssp TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999998888763
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.10 E-value=0.33 Score=40.28 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=34.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhhCCCCC---CceE-EEcCEeCCCCCHHHHhcceEEecCCC
Q 016798 214 AGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCI-LVDDHDVQNIRLDSLRRHVGLVSQDI 272 (382)
Q Consensus 214 ~G~~~aivG~sGsGKSTl~~ll~g~~~~~---~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~ 272 (382)
.+..+.+.||+|+||||+++.+.....-. .-++ .++. +=..+..++.|.-+-.+.+.|
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~-~~~~I~Id~IR~i~~~~~~~~ 75 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP-EGENIGIDDIRTIKDFLNYSP 75 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC-SSSCBCHHHHHHHHHHHTSCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeC-CcCCCCHHHHHHHHHHHhhCc
Confidence 35578899999999999999988755211 1123 2322 112345666665444444444
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=81.53 E-value=0.29 Score=49.06 Aligned_cols=27 Identities=30% Similarity=0.585 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhhCC
Q 016798 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (382)
Q Consensus 213 ~~G~~~aivG~sGsGKSTl~~ll~g~~ 239 (382)
+..+++.|-|+||||||+-.|.++..+
T Consensus 92 ~~~Q~IiisGeSGsGKTe~~k~il~~l 118 (730)
T d1w7ja2 92 ERNQSIIVSGESGAGKTVSAKYAMRYF 118 (730)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999998865
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=81.31 E-value=0.48 Score=42.26 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=18.9
Q ss_pred eEEee-CCCEEEEECCCCCcHHHHH
Q 016798 209 NLHIR-AGETVALIGPSGGGKSTLA 232 (382)
Q Consensus 209 sl~i~-~G~~~aivG~sGsGKSTl~ 232 (382)
|-.+. .|++..+-|.||+|||||-
T Consensus 7 san~~~~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 7 SANVGKEGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp EEEECTTCCEEEEEECTTSCHHHHT
T ss_pred ccccCCCCCEEEEEccCCCCccccc
Confidence 33344 4888899999999999974
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=81.22 E-value=0.31 Score=42.80 Aligned_cols=17 Identities=18% Similarity=0.470 Sum_probs=14.1
Q ss_pred CEEEEECCCCCcHHHHH
Q 016798 216 ETVALIGPSGGGKSTLA 232 (382)
Q Consensus 216 ~~~aivG~sGsGKSTl~ 232 (382)
..+.|.|+-||||||.+
T Consensus 25 g~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 25 GPLLIMAGAGSGKTRVL 41 (318)
T ss_dssp SCEEEEECTTSCHHHHH
T ss_pred CCEEEEecCCccHHHHH
Confidence 44778899999999865
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=80.18 E-value=0.34 Score=44.66 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=17.1
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 016798 218 VALIGPSGGGKSTLAKLLLR 237 (382)
Q Consensus 218 ~aivG~sGsGKSTl~~ll~g 237 (382)
+.|||++|.|||+++.-|+.
T Consensus 46 ~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHH
Confidence 47899999999999986664
|